BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038468
         (458 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B3E966|MNMA_GEOLS tRNA-specific 2-thiouridylase MnmA OS=Geobacter lovleyi (strain
           ATCC BAA-1151 / DSM 17278 / SZ) GN=mnmA PE=3 SV=1
          Length = 354

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 198 SHRMQRKHYRGL----SNPQCVHGIEVVSSPNLMVLDEEERKRWMELTGRDLNFTIPPEA 253
           +HR      +GL    S P  ++ +E+ SS NL+V+ E++      L G D+++ IPP A
Sbjct: 229 THRYTIGQRKGLGIGWSEP--LYVLEIDSSRNLIVVGEQQHLLKAGLIGADISWIIPPPA 286

Query: 254 SDFSS 258
           + F++
Sbjct: 287 TSFNT 291


>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain ATCC
            11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
            GN=LELG_01076 PE=3 SV=1
          Length = 1260

 Score = 33.1 bits (74), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 237  WMELTGRDLNFTIPPEASDFSSWRNLPNTDFELERP-----------PPPIKSASNSQSK 285
            W+EL G++L   I   ++D  +W++L +  + + R            P    +A  +  K
Sbjct: 1076 WIELAGKELLKNIFKISADIQTWKDLYHAIYTINRDLRSMEYPTGSLPTASSNAKETDPK 1135

Query: 286  KLLNGSGLNLSTQPSSHSNGVAMDL 310
             LL   G  LS  P++ S+  A + 
Sbjct: 1136 ALLREGGNTLSRTPTNSSDYTACNF 1160


>sp|Q8WVS4|WDR60_HUMAN WD repeat-containing protein 60 OS=Homo sapiens GN=WDR60 PE=1 SV=3
          Length = 1066

 Score = 33.1 bits (74), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 128 DSNGVSGFDKSDLKLDVFMVQHDMENIYMWVFKERPENALGKMQL 172
           DS+ V+G   S  +  VF+VQ D  NIY+W   +     + K Q+
Sbjct: 953 DSHAVTGLQWSPTRPAVFLVQDDTSNIYIWDLLQSDLGPVAKQQV 997


>sp|Q07914|TIM14_YEAST Mitochondrial import inner membrane translocase subunit TIM14
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=PAM18 PE=1 SV=1
          Length = 168

 Score = 32.3 bits (72), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 264 NTDFELERPPPPIKSASNSQSKKLLNGSGLNLSTQPSSHSNGVAMDL 310
           NT   +E P  PI   +N  +   ++G+G+N+  Q  S      MDL
Sbjct: 6   NTGNSIEAPQLPIPGQTNGSANVTVDGAGVNVGIQNGSQGQKTGMDL 52


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,382,442
Number of Sequences: 539616
Number of extensions: 8304685
Number of successful extensions: 19131
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 19124
Number of HSP's gapped (non-prelim): 19
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)