Query 038468
Match_columns 458
No_of_seqs 75 out of 77
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 11:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06470 ACD_IbpA-B_like Alpha- 98.7 3.8E-08 8.2E-13 80.9 6.1 58 370-431 1-69 (90)
2 PRK11597 heat shock chaperone 98.6 7.1E-08 1.5E-12 87.1 5.9 62 366-431 29-100 (142)
3 cd06471 ACD_LpsHSP_like Group 98.6 1.3E-07 2.9E-12 77.0 6.4 42 371-416 2-43 (93)
4 COG0071 IbpA Molecular chapero 98.6 1.2E-07 2.6E-12 84.0 6.6 65 367-435 38-113 (146)
5 PRK10743 heat shock protein Ib 98.6 1.4E-07 2.9E-12 84.5 6.9 60 370-433 35-104 (137)
6 cd06475 ACD_HspB1_like Alpha c 98.5 2.1E-07 4.5E-12 76.8 6.8 59 370-432 1-63 (86)
7 cd06472 ACD_ScHsp26_like Alpha 98.5 1.5E-07 3.2E-12 77.1 5.6 42 371-416 1-43 (92)
8 cd06479 ACD_HspB7_like Alpha c 98.5 3.1E-07 6.6E-12 75.8 5.7 55 373-431 2-57 (81)
9 cd06497 ACD_alphaA-crystallin_ 98.3 1.7E-06 3.7E-11 71.4 6.4 55 373-431 4-62 (86)
10 PF00011 HSP20: Hsp20/alpha cr 98.3 2.6E-06 5.6E-11 69.8 6.6 39 373-415 1-39 (102)
11 cd06464 ACD_sHsps-like Alpha-c 98.2 2.9E-06 6.3E-11 66.1 5.8 43 373-419 1-43 (88)
12 cd06477 ACD_HspB3_Like Alpha c 98.1 4.2E-06 9.1E-11 69.4 5.5 53 375-431 3-59 (83)
13 cd06478 ACD_HspB4-5-6 Alpha-cr 98.1 9.2E-06 2E-10 66.5 6.3 55 373-431 1-59 (83)
14 cd06482 ACD_HspB10 Alpha cryst 97.9 1.5E-05 3.1E-10 66.9 5.2 51 377-431 6-63 (87)
15 cd06498 ACD_alphaB-crystallin_ 97.9 2.7E-05 5.8E-10 64.3 6.1 54 374-431 2-59 (84)
16 cd06476 ACD_HspB2_like Alpha c 97.7 5.8E-05 1.3E-09 62.4 5.5 36 376-415 4-39 (83)
17 cd06526 metazoan_ACD Alpha-cry 97.7 5.4E-05 1.2E-09 61.2 5.2 51 377-431 5-59 (83)
18 cd06481 ACD_HspB9_like Alpha c 97.6 0.00012 2.5E-09 60.7 5.1 37 376-416 4-40 (87)
19 cd00298 ACD_sHsps_p23-like Thi 96.9 0.0042 9E-08 45.9 6.6 40 374-417 1-40 (80)
20 KOG0710 Molecular chaperone (s 96.2 0.005 1.1E-07 58.1 4.3 49 367-419 82-131 (196)
21 cd06480 ACD_HspB8_like Alpha-c 96.2 0.0097 2.1E-07 50.6 5.2 62 366-431 2-67 (91)
22 cd06469 p23_DYX1C1_like p23_li 94.4 0.069 1.5E-06 41.8 4.3 34 375-412 2-35 (78)
23 PF05455 GvpH: GvpH; InterPro 92.8 0.3 6.5E-06 46.7 6.6 44 366-411 88-133 (177)
24 cd06463 p23_like Proteins cont 90.7 0.85 1.8E-05 34.8 5.9 37 375-415 2-38 (84)
25 cd06466 p23_CS_SGT1_like p23_l 87.8 1 2.3E-05 35.4 4.6 38 373-414 1-38 (84)
26 KOG3591 Alpha crystallins [Pos 80.4 3.8 8.3E-05 38.7 5.7 61 367-431 60-124 (173)
27 PF12992 DUF3876: Domain of un 69.4 13 0.00028 32.3 5.7 50 356-411 14-68 (95)
28 cd06468 p23_CacyBP p23_like do 64.6 18 0.0004 29.3 5.4 43 373-419 5-50 (92)
29 cd06465 p23_hB-ind1_like p23_l 57.3 41 0.00089 28.4 6.4 40 370-415 1-40 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 54.8 27 0.00059 28.0 4.8 38 374-415 2-39 (84)
31 cd06467 p23_NUDC_like p23_like 48.8 51 0.0011 26.1 5.4 34 375-412 4-38 (85)
32 cd06493 p23_NUDCD1_like p23_NU 46.1 55 0.0012 26.6 5.3 34 375-412 4-38 (85)
33 cd00237 p23 p23 binds heat sho 44.4 70 0.0015 27.8 6.0 39 370-414 2-40 (106)
34 cd06471 ACD_LpsHSP_like Group 42.4 35 0.00077 27.8 3.7 27 381-411 64-90 (93)
35 PF02911 Formyl_trans_C: Formy 41.4 37 0.00081 27.6 3.7 52 366-421 26-90 (100)
36 PF04972 BON: BON domain; Int 39.5 48 0.001 25.0 3.8 27 387-417 11-37 (64)
37 cd06482 ACD_HspB10 Alpha cryst 38.4 35 0.00075 28.9 3.1 29 381-412 56-85 (87)
38 PF04969 CS: CS domain; Inter 38.4 1.7E+02 0.0037 22.0 6.9 42 372-417 3-46 (79)
39 cd06472 ACD_ScHsp26_like Alpha 36.8 48 0.001 27.2 3.7 29 379-411 60-89 (92)
40 cd06477 ACD_HspB3_Like Alpha c 35.5 61 0.0013 27.2 4.1 29 380-412 51-81 (83)
41 cd06464 ACD_sHsps-like Alpha-c 34.4 68 0.0015 24.8 4.0 32 377-412 54-86 (88)
42 PRK14633 hypothetical protein; 32.4 93 0.002 28.7 5.1 37 378-415 67-116 (150)
43 PF10123 Mu-like_Pro: Mu-like 32.1 53 0.0012 33.3 3.8 34 211-244 112-163 (326)
44 cd06494 p23_NUDCD2_like p23-li 28.6 1.3E+02 0.0028 25.7 5.0 33 375-411 11-44 (93)
45 cd06481 ACD_HspB9_like Alpha c 28.1 73 0.0016 26.5 3.4 31 378-412 53-85 (87)
46 PF05455 GvpH: GvpH; InterPro 26.0 1.6E+02 0.0035 28.6 5.7 46 366-416 124-169 (177)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 25.8 91 0.002 25.6 3.5 29 381-412 52-81 (83)
48 PRK14646 hypothetical protein; 24.8 1.5E+02 0.0033 27.5 5.2 36 379-415 74-122 (155)
49 PRK14634 hypothetical protein; 24.8 1.6E+02 0.0034 27.4 5.3 37 378-415 73-122 (155)
50 cd06488 p23_melusin_like p23_l 24.4 2.3E+02 0.0049 23.3 5.6 39 373-415 4-42 (87)
51 cd06526 metazoan_ACD Alpha-cry 22.8 1.3E+02 0.0027 24.3 3.8 31 379-412 50-81 (83)
52 PF00011 HSP20: Hsp20/alpha cr 22.3 1.2E+02 0.0026 24.8 3.6 36 378-417 54-90 (102)
53 cd06497 ACD_alphaA-crystallin_ 22.3 1.2E+02 0.0026 25.2 3.6 28 381-412 55-84 (86)
54 smart00442 FGF Acidic and basi 22.3 2.5E+02 0.0055 25.0 5.9 54 379-432 11-70 (126)
55 PRK14640 hypothetical protein; 21.5 1.9E+02 0.0041 26.7 5.1 37 378-415 70-119 (152)
56 PRK11198 LysM domain/BON super 21.3 1.2E+02 0.0025 27.7 3.6 24 388-415 38-61 (147)
57 PRK14636 hypothetical protein; 20.8 2E+02 0.0044 27.4 5.2 37 378-415 71-120 (176)
58 PF01060 DUF290: Transthyretin 20.4 2.8E+02 0.0061 22.6 5.4 46 359-415 2-48 (80)
59 PRK14643 hypothetical protein; 20.1 1.9E+02 0.0042 27.3 4.9 38 378-416 77-127 (164)
No 1
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.68 E-value=3.8e-08 Score=80.93 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=48.0
Q ss_pred cceeeEEc-CceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCCC----------ceeecCceeeec
Q 038468 370 AAKAIYED-EEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMP----------FIKRHDRTFKLT 431 (458)
Q Consensus 370 paVDI~Ed-EdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~~----------~ikr~~r~Fkm~ 431 (458)
|++||+|+ +++|.+.|+|||+++++++|+++ ++.|+|+|+++.... ...+..|+|.|-
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~----~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP 69 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE----NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLA 69 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECC
Confidence 57999997 59999999999999999999999 999999999975542 134456666665
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=98.59 E-value=7.1e-08 Score=87.13 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCcccceeeEE-cCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC---CCcee------ecCceeeec
Q 038468 366 GPSTAAKAIYE-DEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG---MPFIK------RHDRTFKLT 431 (458)
Q Consensus 366 Gp~~paVDI~E-dEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg---~~~ik------r~~r~Fkm~ 431 (458)
.+..|++||+| ++++|.|.++||||++++++|+++ +|.|+|+|+++.. ..+++ +..|+|.|-
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~----~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP 100 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE----GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLA 100 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE----CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECC
Confidence 45669999998 578999999999999999999999 9999999997532 22322 355666665
No 3
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=98.57 E-value=1.3e-07 Score=77.00 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=40.2
Q ss_pred ceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc
Q 038468 371 AKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS 416 (458)
Q Consensus 371 aVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt 416 (458)
++||+|++++|.|.+.||||++++++|+++ ++.|+|+|+++.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~----~~~L~I~g~~~~ 43 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK----DGYLTISAKRDE 43 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcc
Confidence 689999999999999999999999999999 899999999974
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-07 Score=83.98 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred CcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc-----CCC------ceeecCceeeecCCCc
Q 038468 367 PSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS-----GMP------FIKRHDRTFKLTDPAS 435 (458)
Q Consensus 367 p~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt-----g~~------~ikr~~r~Fkm~d~t~ 435 (458)
-.+|++||+|+++.|.|.++|||+++++++|+++ ++.|+|+|+++. +.. .-.+..|+|.|-+...
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~----~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE----GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE----CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc
Confidence 4789999999999999999999999999999999 999999999985 111 2355667777765443
No 5
>PRK10743 heat shock protein IbpA; Provisional
Probab=98.56 E-value=1.4e-07 Score=84.50 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=48.8
Q ss_pred cceeeE-EcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC---CCcee------ecCceeeecCC
Q 038468 370 AAKAIY-EDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG---MPFIK------RHDRTFKLTDP 433 (458)
Q Consensus 370 paVDI~-EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg---~~~ik------r~~r~Fkm~d~ 433 (458)
|++||+ |++++|.|+++||||++++++|+++ +|.|+|+|+++.. +.+++ ...|+|.|-+.
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~----~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~ 104 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQ----DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAEN 104 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCC
Confidence 889999 4999999999999999999999999 9999999998642 22332 35667777643
No 6
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.54 E-value=2.1e-07 Score=76.83 Aligned_cols=59 Identities=8% Similarity=0.212 Sum_probs=48.4
Q ss_pred cceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCC----CceeecCceeeecC
Q 038468 370 AAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGM----PFIKRHDRTFKLTD 432 (458)
Q Consensus 370 paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~----~~ikr~~r~Fkm~d 432 (458)
|+-||+|++++|.|.+.|||+++++++|+++ ++.|+|+|++.... -..++..|+|.|-+
T Consensus 1 ~~~~i~e~~~~~~v~~dlPG~~~edi~V~v~----~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~ 63 (86)
T cd06475 1 GMSEIRQTADRWKVSLDVNHFAPEELVVKTK----DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPP 63 (86)
T ss_pred CcceEEEcCCeEEEEEECCCCCHHHEEEEEE----CCEEEEEEEECcCcCCCCEEEEEEEEEEECCC
Confidence 5789999999999999999999999999999 99999999985311 12345667777653
No 7
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.52 E-value=1.5e-07 Score=77.09 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=38.3
Q ss_pred ceeeEEcCceEEEEEecCCccCCceeEEEEEecCC-CeEEEEEEEcc
Q 038468 371 AKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQ-GIIKVSCVSTS 416 (458)
Q Consensus 371 aVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~d-G~V~IsGestt 416 (458)
.+||+|++++|.|.|.||||++++++|++. + ++|+|+|+++.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~----~~~~L~I~g~~~~ 43 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVE----DGRVLRISGERKK 43 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEe----CCCEEEEEEEecc
Confidence 489999999999999999999999999987 5 58999999863
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.45 E-value=3.1e-07 Score=75.75 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=47.1
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC-CCceeecCceeeec
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG-MPFIKRHDRTFKLT 431 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg-~~~ikr~~r~Fkm~ 431 (458)
||+|++++|.|.+.|||+++++++|+++ +|.|+|+|+++.. +....+..|+|.|-
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~----~~~L~I~ger~~~~~~~~g~F~R~~~LP 57 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS----NNQIEVHAEKLASDGTVMNTFTHKCQLP 57 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEeccCCCEEEEEEEEEECC
Confidence 7999999999999999999999999999 9999999998532 23446777888764
No 9
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.29 E-value=1.7e-06 Score=71.44 Aligned_cols=55 Identities=11% Similarity=0.313 Sum_probs=44.8
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc---CCCce-eecCceeeec
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS---GMPFI-KRHDRTFKLT 431 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt---g~~~i-kr~~r~Fkm~ 431 (458)
+|+|++++|.|.+.|||+++++++|+++ +|.|+|+|+... +..++ +...|+|.|-
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP 62 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL----DDYVEIHGKHSERQDDHGYISREFHRRYRLP 62 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcceeCCCCEEEEEEEEEEECC
Confidence 7999999999999999999999999999 999999998742 11232 2356677665
No 10
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=98.25 E-value=2.6e-06 Score=69.77 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=36.2
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
||.|++++|.|.+.|||+++++++|+++ ++.|.|+|.++
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~----~~~L~I~g~~~ 39 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD----DNKLVISGKRK 39 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE----TTEEEEEEEEE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe----cCccceeceee
Confidence 8999999999999999999999999999 99999999998
No 11
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.21 E-value=2.9e-06 Score=66.13 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=39.9
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCCC
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMP 419 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~~ 419 (458)
||+|++++|.|.+.|||+++++++|++. ++.|.|+|.++....
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~----~~~l~I~g~~~~~~~ 43 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE----DGVLTISGEREEEEE 43 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEecccc
Confidence 6899999999999999999999999999 799999999986544
No 12
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.13 E-value=4.2e-06 Score=69.43 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=43.2
Q ss_pred EEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc---CCCce-eecCceeeec
Q 038468 375 YEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS---GMPFI-KRHDRTFKLT 431 (458)
Q Consensus 375 ~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt---g~~~i-kr~~r~Fkm~ 431 (458)
-|++++|.|.+.|||+++++++|+++ +|.|+|+|++.. +..++ +...|+|.|-
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP 59 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVF----EGWLLIKGQHGVRMDEHGFISRSFTRQYQLP 59 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEccccCCCCEEEEEEEEEEECC
Confidence 48899999999999999999999999 999999999753 22333 3556777664
No 13
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.07 E-value=9.2e-06 Score=66.48 Aligned_cols=55 Identities=11% Similarity=0.277 Sum_probs=43.5
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc---CCCce-eecCceeeec
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS---GMPFI-KRHDRTFKLT 431 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt---g~~~i-kr~~r~Fkm~ 431 (458)
.|.+++++|.|.+.|||+++++++|+++ +|.|+|+|++.. +..++ +...|.|.|-
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP 59 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVL----GDFVEIHGKHEERQDEHGFISREFHRRYRLP 59 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEceEcCCCCEEEEEEEEEEECC
Confidence 3789999999999999999999999999 999999998752 12232 2355666664
No 14
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=97.94 E-value=1.5e-05 Score=66.87 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=41.0
Q ss_pred cCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCC-------CceeecCceeeec
Q 038468 377 DEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGM-------PFIKRHDRTFKLT 431 (458)
Q Consensus 377 dEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~-------~~ikr~~r~Fkm~ 431 (458)
++++|.|.+.|||+++++++|+++ +|.|+|+|+++... ...-+..|+|.|-
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~----~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP 63 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK----DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLP 63 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEecccccCCccEEEEEEEEEEEECC
Confidence 678999999999999999999999 99999999986422 2233345777764
No 15
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.90 E-value=2.7e-05 Score=64.26 Aligned_cols=54 Identities=7% Similarity=0.214 Sum_probs=42.5
Q ss_pred eEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC---CC-ceeecCceeeec
Q 038468 374 IYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG---MP-FIKRHDRTFKLT 431 (458)
Q Consensus 374 I~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg---~~-~ikr~~r~Fkm~ 431 (458)
+.+++++|.|.+.|||+++++++|+++ +|.|+|+|++... .. +-+...|+|.|-
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP 59 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL----GDFIEIHGKHEERQDEHGFISREFQRKYRIP 59 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcceeCCCCEEEEEEEEEEECC
Confidence 578999999999999999999999999 9999999976421 11 222356666664
No 16
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=97.73 E-value=5.8e-05 Score=62.35 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=33.6
Q ss_pred EcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 376 EDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 376 EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
-++++|.|.+.|||+++++++|+++ +|+|+|+|+..
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~ 39 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTV----DNLLEVSARHP 39 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEc
Confidence 4689999999999999999999999 99999999874
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.73 E-value=5.4e-05 Score=61.16 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=40.4
Q ss_pred cCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCC----CceeecCceeeec
Q 038468 377 DEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGM----PFIKRHDRTFKLT 431 (458)
Q Consensus 377 dEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~----~~ikr~~r~Fkm~ 431 (458)
+.++|.+.+.|||+++++++|+++ ++.|+|+|+++... ..-.+..|.|.|-
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~----~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP 59 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVS----DNKLVVEGKHEEREDEHGYVSREFTRRYQLP 59 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEE----CCEEEEEEEEeeeccCCCEEEEEEEEEEECC
Confidence 446999999999999999999999 89999999997532 2334555566554
No 18
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=97.57 E-value=0.00012 Score=60.75 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=34.0
Q ss_pred EcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc
Q 038468 376 EDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS 416 (458)
Q Consensus 376 EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt 416 (458)
+-+++|.|.+.|||+++++++|+++ +|.|+|+|+++.
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~ 40 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD----GRKLVVTGKREK 40 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE----CCEEEEEEEEee
Confidence 4579999999999999999999999 999999999753
No 19
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=96.88 E-value=0.0042 Score=45.89 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=36.3
Q ss_pred eEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC
Q 038468 374 IYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG 417 (458)
Q Consensus 374 I~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg 417 (458)
++++++.|.|+|.|||+.+++++|.+. ++.|.|+|.....
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~----~~~l~v~~~~~~~ 40 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE----DNVLTISGKREEE 40 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcCC
Confidence 368899999999999999999999999 7999999998744
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.005 Score=58.09 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=42.1
Q ss_pred CcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCC-eEEEEEEEccCCC
Q 038468 367 PSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQG-IIKVSCVSTSGMP 419 (458)
Q Consensus 367 p~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG-~V~IsGesttg~~ 419 (458)
+.-.+.||.|.+++|.|+++|||+.+++++|.++ ++ +++|+|+++....
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~----~~~~l~isGe~~~e~e 131 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVE----DEKVLTISGERKKEEE 131 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEec----cCcEEEEecccccccc
Confidence 3446778999999999999999999999999988 66 7999999975543
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=96.16 E-value=0.0097 Score=50.64 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCC----CceeecCceeeec
Q 038468 366 GPSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGM----PFIKRHDRTFKLT 431 (458)
Q Consensus 366 Gp~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~----~~ikr~~r~Fkm~ 431 (458)
||.-+.-.+.-+++.|-|.+.+-|.++++++|++. ++.|+|+|.....+ -+.+...|.|.|-
T Consensus 2 ~~~~~~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~----~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP 67 (91)
T cd06480 2 GPPEPRNPPPNSSEPWKVCVNVHSFKPEELTVKTK----DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLP 67 (91)
T ss_pred CCCcccCCCCCCCCcEEEEEEeCCCCHHHcEEEEE----CCEEEEEEEECcccCCCCEEEEEEEEEEECC
Confidence 34444445667889999999999999999999999 99999999875332 2334456777665
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=94.35 E-value=0.069 Score=41.77 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEE
Q 038468 375 YEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 375 ~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsG 412 (458)
+++++.+.|.|.|||+++++++|+.+ +..|+|+|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~----~~~l~i~~ 35 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCS----DLYLKVNF 35 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEe----cCEEEEcC
Confidence 68999999999999999999999988 78899988
No 23
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=92.85 E-value=0.3 Score=46.72 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=33.4
Q ss_pred CCcccceeeEEcCce-EEEEEecCCccCCc-eeEEEEEecCCCeEEEE
Q 038468 366 GPSTAAKAIYEDEEG-YLIIISLPFVDLQR-VKVSWRNTLTQGIIKVS 411 (458)
Q Consensus 366 Gp~~paVDI~EdEda-YlfrVSLPGVd~d~-vkVS~eni~~dG~V~Is 411 (458)
..-.+.||+-|.++| .++.+.||||..++ ++|.++ ...+.|+|+
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~--~d~~~L~i~ 133 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLD--DDEGALTIR 133 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEee--cCCceEEEe
Confidence 444577999999996 88888999997777 888877 235666663
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=90.69 E-value=0.85 Score=34.80 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=32.9
Q ss_pred EEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 375 YEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 375 ~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
+++++.+.|.|.+||+.+++++|.++ ++.|+|++...
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~----~~~l~i~~~~~ 38 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFT----PKSLTVSVKGG 38 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEe----cCEEEEEeeCC
Confidence 57889999999999999999999988 78899998754
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=87.79 E-value=1 Score=35.41 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.8
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEE
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVS 414 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGes 414 (458)
|-+++++...|.|.+||+.+++++|..+ ...|.|++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~----~~~l~i~~~~ 38 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN----EQSLSVSIIL 38 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe----cCEEEEEEEC
Confidence 4578999999999999999999999998 7789998764
No 26
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=3.8 Score=38.68 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=52.3
Q ss_pred CcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccC---CCceeec-Cceeeec
Q 038468 367 PSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG---MPFIKRH-DRTFKLT 431 (458)
Q Consensus 367 p~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg---~~~ikr~-~r~Fkm~ 431 (458)
...++..|-.++++|-+.+.+-..++++++|... |+.|.|.|..-.. -.+|.|+ .|.|+|-
T Consensus 60 ~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~----~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP 124 (173)
T KOG3591|consen 60 LSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTD----DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLP 124 (173)
T ss_pred CcccccccccCCCcEEEEEEcccCcccceEEEeC----CCEEEEEeeeccccCCCCeEEEEEEEEecCC
Confidence 4568899999999999999999999999999999 9999999987544 3677775 6788774
No 27
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=69.42 E-value=13 Score=32.30 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=36.6
Q ss_pred ccccccccccCCcccceeeEEcCceEEEEEecCCc-----cCCceeEEEEEecCCCeEEEE
Q 038468 356 DFSGVMKNVYGPSTAAKAIYEDEEGYLIIISLPFV-----DLQRVKVSWRNTLTQGIIKVS 411 (458)
Q Consensus 356 ~fTG~a~~~~Gp~~paVDI~EdEdaYlfrVSLPGV-----d~d~vkVS~eni~~dG~V~Is 411 (458)
.+.|..+...|- |+|.|+++.++|.+.+.-+.- +.+...|..+ +|.+.|.
T Consensus 14 ~~~G~W~Sv~~~--P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~----~g~~fI~ 68 (95)
T PF12992_consen 14 KICGEWESVNGK--PDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEE----DGNLFIE 68 (95)
T ss_pred eeEEEeEccCCC--CCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEe----CCEEEEe
Confidence 556666555553 999999999999999988775 4444455544 8888875
No 28
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=64.57 E-value=18 Score=29.27 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.2
Q ss_pred eeEEcCceEEEEEecCCccC---CceeEEEEEecCCCeEEEEEEEccCCC
Q 038468 373 AIYEDEEGYLIIISLPFVDL---QRVKVSWRNTLTQGIIKVSCVSTSGMP 419 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~---d~vkVS~eni~~dG~V~IsGesttg~~ 419 (458)
+=+++++-..|.|.+|++.. ++++|+++ ...|.|++....|.+
T Consensus 5 ~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~----~~~l~v~~~~~~~~~ 50 (92)
T cd06468 5 AWDQSDKFVKIYITLKGVHQLPKENIQVEFT----ERSFELKVHDLNGKN 50 (92)
T ss_pred eeecCCCEEEEEEEccCCCcCCcccEEEEec----CCEEEEEEECCCCcE
Confidence 34678888999999999987 88888887 788999885443433
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=57.28 E-value=41 Score=28.41 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=32.8
Q ss_pred cceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 370 AAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 370 paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
|.++=|.+++...|.|.+|++ ++++|..+ ...|.|++...
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~----~~~l~v~~~~~ 40 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLE----PTSLSFKAKGG 40 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEE----CCEEEEEEEcC
Confidence 356778999999999999998 67788777 78899988543
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=54.76 E-value=27 Score=28.01 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=32.6
Q ss_pred eEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 374 IYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 374 I~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
=|++++-..|.|.++|+.+++++|..+ +..|.+++...
T Consensus 2 W~Q~~~~V~iti~~k~~~~~~~~v~~~----~~~l~~~~~~~ 39 (84)
T cd06489 2 WYQTESQVVITILIKNVKPEDVSVEFE----KRELSATVKLP 39 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEe----CCEEEEEEECC
Confidence 367788899999999999999999998 78899988654
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=48.82 E-value=51 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=28.0
Q ss_pred EEcCceEEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 375 YEDEEGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 375 ~EdEdaYlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
+++++...|.+.+| ++++++++|.+. ...|.|+.
T Consensus 4 ~Qt~~~V~i~i~~~~~~~~~dv~v~~~----~~~l~v~~ 38 (85)
T cd06467 4 TQTLDEVTVTIPLPEGTKSKDVKVEIT----PKHLKVGV 38 (85)
T ss_pred EeeCCEEEEEEECCCCCcceeEEEEEE----cCEEEEEE
Confidence 57788899999997 789999999988 67777765
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=46.06 E-value=55 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=28.7
Q ss_pred EEcCceEEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 375 YEDEEGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 375 ~EdEdaYlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
+++++...|.|-+| |+.+++++|+.+ ...|+|+.
T Consensus 4 ~Qt~~~V~v~i~~p~~~~~~dv~v~~~----~~~l~v~~ 38 (85)
T cd06493 4 QQTEEDLTLTIRLPEDTTKEDIRIKFL----PDHISIAL 38 (85)
T ss_pred EEeCCEEEEEEECCCCCChhhEEEEEe----cCEEEEEe
Confidence 57888899999996 999999999988 67777754
No 33
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=44.36 E-value=70 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=32.3
Q ss_pred cceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEE
Q 038468 370 AAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVS 414 (458)
Q Consensus 370 paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGes 414 (458)
|.++=|+.++-.+|.|.+|++ ++++|..+ ...|+++|..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~----~~~l~f~~~~ 40 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFE----KSKLTFSCLN 40 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEEEe----cCEEEEEEEC
Confidence 567788999999999999984 68888877 6789999844
No 34
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=42.42 E-value=35 Score=27.81 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.3
Q ss_pred EEEEEecCCccCCceeEEEEEecCCCeEEEE
Q 038468 381 YLIIISLPFVDLQRVKVSWRNTLTQGIIKVS 411 (458)
Q Consensus 381 YlfrVSLPGVd~d~vkVS~eni~~dG~V~Is 411 (458)
|.=.+.||.|+.+.++-+++ ||+|+|.
T Consensus 64 f~r~~~lp~v~~~~i~A~~~----dGvL~I~ 90 (93)
T cd06471 64 FSRSFYLPNVDEEEIKAKYE----NGVLKIT 90 (93)
T ss_pred EEEEEECCCCCHHHCEEEEE----CCEEEEE
Confidence 45557899999999999999 9999996
No 35
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=41.45 E-value=37 Score=27.55 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=36.7
Q ss_pred CCcccceeeEEcCceEEEEEec---------CC----ccCCceeEEEEEecCCCeEEEEEEEccCCCce
Q 038468 366 GPSTAAKAIYEDEEGYLIIISL---------PF----VDLQRVKVSWRNTLTQGIIKVSCVSTSGMPFI 421 (458)
Q Consensus 366 Gp~~paVDI~EdEdaYlfrVSL---------PG----Vd~d~vkVS~eni~~dG~V~IsGesttg~~~i 421 (458)
+|+-|+-..++.+.=.++.+++ || ++.+.+-|.|. ||.|.|.-+...|.+.+
T Consensus 26 ~p~pga~~~~~~~~i~i~~~~~~~~~~~~~~pG~i~~~~~~~l~V~~~----dg~l~i~~~q~~gkk~~ 90 (100)
T PF02911_consen 26 NPYPGAFTTFNGKRIKILKAEPLEDDSSSNPPGTIVYIDKNGLLVACG----DGALRIRELQPEGKKPM 90 (100)
T ss_dssp TTTT-EEEEETTEEEEEEEEEEEETTSSSSSTTBEEEEETTEEEEETS----BSEEEEEEEEETTS-EE
T ss_pred CCCCCEEEeeCCeEEEEEeeeecccccccccCceEEEEcCCEEEEEEC----CcEEEEEEEEcCCCCEE
Confidence 5777777777777667777765 88 44555666666 99999999988776543
No 36
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=39.47 E-value=48 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.6
Q ss_pred cCCccCCceeEEEEEecCCCeEEEEEEEccC
Q 038468 387 LPFVDLQRVKVSWRNTLTQGIIKVSCVSTSG 417 (458)
Q Consensus 387 LPGVd~d~vkVS~eni~~dG~V~IsGesttg 417 (458)
-|+++...++|+++ +|.|.++|.-.+.
T Consensus 11 ~~~~~~~~i~v~v~----~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 11 DPWLPDSNISVSVE----NGVVTLSGEVPSQ 37 (64)
T ss_dssp --CTT-TTEEEEEE----CTEEEEEEEESSC
T ss_pred ccccCCCeEEEEEE----CCEEEEEeeCcHH
Confidence 34666778999999 9999999998654
No 37
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=38.43 E-value=35 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=23.4
Q ss_pred EEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 381 YLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 381 YlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
|.=.+.|| +|+.+.++=+++ .||+|+|.+
T Consensus 56 F~R~f~LP~~Vd~d~i~A~~~---~~~~l~i~~ 85 (87)
T cd06482 56 ICKEFSLPPGVDEKDVTYSYG---LGSVVKIET 85 (87)
T ss_pred EEEEEECCCCcChHHcEEEEc---CCCEEEEee
Confidence 45578999 799999888866 577999975
No 38
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=38.38 E-value=1.7e+02 Score=22.02 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=32.5
Q ss_pred eeeEEcCceEEEEEecCCcc--CCceeEEEEEecCCCeEEEEEEEccC
Q 038468 372 KAIYEDEEGYLIIISLPFVD--LQRVKVSWRNTLTQGIIKVSCVSTSG 417 (458)
Q Consensus 372 VDI~EdEdaYlfrVSLPGVd--~d~vkVS~eni~~dG~V~IsGesttg 417 (458)
.+=+++++...+.|.+++.. +++++|.++ +..|+|+.....+
T Consensus 3 y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~----~~~l~v~~~~~~~ 46 (79)
T PF04969_consen 3 YDWYQTDDEVTVTIPVKPVDISKEDVKVDFT----DTSLSVSIKSGDG 46 (79)
T ss_dssp EEEEEESSEEEEEEE-TTTTSSGGGEEEEEE----TTEEEEEEEETTS
T ss_pred eEEEECCCEEEEEEEEcCCCCChHHeEEEEE----eeEEEEEEEccCC
Confidence 35578899999999996654 899999988 8889998665533
No 39
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=36.81 E-value=48 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=25.3
Q ss_pred ceEEEEEecC-CccCCceeEEEEEecCCCeEEEE
Q 038468 379 EGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVS 411 (458)
Q Consensus 379 daYlfrVSLP-GVd~d~vkVS~eni~~dG~V~Is 411 (458)
..|.-.+.|| .|+.+.++-+++ ||+|+|+
T Consensus 60 g~f~r~i~LP~~v~~~~i~A~~~----nGvL~I~ 89 (92)
T cd06472 60 GRFVRRFRLPENADADEVKAFLE----NGVLTVT 89 (92)
T ss_pred cEEEEEEECCCCCCHHHCEEEEE----CCEEEEE
Confidence 4677788999 699999999999 9999996
No 40
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=35.46 E-value=61 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=24.4
Q ss_pred eEEEEEecC-CccCCceeEEE-EEecCCCeEEEEE
Q 038468 380 GYLIIISLP-FVDLQRVKVSW-RNTLTQGIIKVSC 412 (458)
Q Consensus 380 aYlfrVSLP-GVd~d~vkVS~-eni~~dG~V~IsG 412 (458)
.|.=.+.|| +|+.+.++=+. + ||+|+|.+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~----dGvL~I~~ 81 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCH----DGILVVET 81 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcC----CCEEEEEe
Confidence 566678899 99999988874 6 99999986
No 41
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=34.41 E-value=68 Score=24.78 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.8
Q ss_pred cCceEEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 377 DEEGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 377 dEdaYlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
....|.-++.|| +++.+.++.+++ ||+|+|+-
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~----~G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLE----NGVLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEe----CCEEEEEE
Confidence 357789999999 788888888888 89999974
No 42
>PRK14633 hypothetical protein; Provisional
Probab=32.41 E-value=93 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=29.7
Q ss_pred CceEEEEEecCCccC-------------CceeEEEEEecCCCeEEEEEEEc
Q 038468 378 EEGYLIIISLPFVDL-------------QRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 378 EdaYlfrVSLPGVd~-------------d~vkVS~eni~~dG~V~IsGest 415 (458)
+++|.+.||=||+++ ..++|+.. ...+|.-+++|.-.
T Consensus 67 ~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~v~V~~~-~~~~~~~~~~G~L~ 116 (150)
T PRK14633 67 SGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTL-APVGSQTKFKGVLE 116 (150)
T ss_pred CCCeEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEe-cccCCcEEEEEEEE
Confidence 578999999999998 46777776 55578888888775
No 43
>PF10123 Mu-like_Pro: Mu-like prophage I protein; InterPro: IPR012106 This entry is represented by the Bacteriophage Mu, Gp32. The characteristics of the protein distribution suggest prophage matches.
Probab=32.05 E-value=53 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=27.7
Q ss_pred CCceeeeEEEeeCCCCCCC------------------CHHHHHHhHHHhcCc
Q 038468 211 NPQCVHGIEVVSSPNLMVL------------------DEEERKRWMELTGRD 244 (458)
Q Consensus 211 n~q~V~gI~~I~~Pnl~~~------------------~eeD~kRf~~LTG~d 244 (458)
+...|+++=+.|.|+|.+| ..+.+++...+.|+.
T Consensus 112 ~v~~l~~aaLTN~P~l~gl~~l~a~~~~~~~~~~~~~~~~~lk~L~~aLGL~ 163 (326)
T PF10123_consen 112 RVLRLHSAALTNRPALDGLAPLAALASSQQSTQEEEEMMMLLKALAAALGLP 163 (326)
T ss_pred cEEEEEEeeecCCCcccccHHHHhhhcccccccccccchHHHHHHHHHhCCC
Confidence 4558999999999999666 346688999999977
No 44
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=28.56 E-value=1.3e+02 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=25.7
Q ss_pred EEcCceEEEEEecC-CccCCceeEEEEEecCCCeEEEE
Q 038468 375 YEDEEGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVS 411 (458)
Q Consensus 375 ~EdEdaYlfrVSLP-GVd~d~vkVS~eni~~dG~V~Is 411 (458)
+.+.+...|.|-|| |+++.+++|+.+ ...|+|.
T Consensus 11 ~QT~~eV~v~i~lp~~~~~kdv~V~i~----~~~l~V~ 44 (93)
T cd06494 11 YQTMDEVFIEVNVPPGTRAKDVKCKLG----SRDISLA 44 (93)
T ss_pred EeEcCEEEEEEECCCCCceeeEEEEEE----cCEEEEE
Confidence 56778888888776 899999998888 6666654
No 45
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=28.07 E-value=73 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.1
Q ss_pred CceEEEEEecC-CccCCceeEEE-EEecCCCeEEEEE
Q 038468 378 EEGYLIIISLP-FVDLQRVKVSW-RNTLTQGIIKVSC 412 (458)
Q Consensus 378 EdaYlfrVSLP-GVd~d~vkVS~-eni~~dG~V~IsG 412 (458)
...|.=.+.|| .|+.+.++-++ + ||+|+|..
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~----dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSP----SGHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCC----CceEEEEc
Confidence 45677889999 79999988887 7 99999975
No 46
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=26.04 E-value=1.6e+02 Score=28.60 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=36.2
Q ss_pred CCcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc
Q 038468 366 GPSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS 416 (458)
Q Consensus 366 Gp~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt 416 (458)
..=++++.|...++ |+=+|.||=-..+..+++|+ +|+|.|+..++.
T Consensus 124 ~~d~~~L~i~~~~~-~~krv~L~~~~~e~~~~t~n----NgILEIri~~~~ 169 (177)
T PF05455_consen 124 DDDEGALTIRVGEK-YLKRVALPWPDPEITSATFN----NGILEIRIRRTE 169 (177)
T ss_pred ecCCceEEEecCCc-eEeeEecCCCccceeeEEEe----CceEEEEEeecC
Confidence 55567777766666 66799999666666788888 999999999873
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=25.79 E-value=91 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.1
Q ss_pred EEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 381 YLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 381 YlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
|.=++.|| +|+.+.++=+. ..||+|+|+.
T Consensus 52 f~R~~~LP~~vd~~~i~A~~---~~dGvL~I~~ 81 (83)
T cd06478 52 FHRRYRLPPGVDPAAITSSL---SADGVLTISG 81 (83)
T ss_pred EEEEEECCCCcChHHeEEEE---CCCCEEEEEe
Confidence 67789998 69888887665 2399999975
No 48
>PRK14646 hypothetical protein; Provisional
Probab=24.78 E-value=1.5e+02 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=27.4
Q ss_pred ceEEEEEecCCccC-------------CceeEEEEEecCCCeEEEEEEEc
Q 038468 379 EGYLIIISLPFVDL-------------QRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 379 daYlfrVSLPGVd~-------------d~vkVS~eni~~dG~V~IsGest 415 (458)
++|.+.||=||+++ ..++|+.. -.-+|.-.++|...
T Consensus 74 ~~Y~LEVSSPGldRpL~~~~df~r~~G~~v~V~l~-~~~~~~~~~~G~L~ 122 (155)
T PRK14646 74 CSYVLEISSQGVSDELTSERDFKTFKGFPVNVELN-QKNSKIKFLNGLLY 122 (155)
T ss_pred CCeEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEe-cCcCCeEEEEEEEE
Confidence 78999999999998 57788776 34466666666654
No 49
>PRK14634 hypothetical protein; Provisional
Probab=24.76 E-value=1.6e+02 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=28.2
Q ss_pred CceEEEEEecCCccC-------------CceeEEEEEecCCCeEEEEEEEc
Q 038468 378 EEGYLIIISLPFVDL-------------QRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 378 EdaYlfrVSLPGVd~-------------d~vkVS~eni~~dG~V~IsGest 415 (458)
.++|.+.||=||+++ ..|+|... -..+|.-.++|.-.
T Consensus 73 ~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~V~V~l~-~~~~~~k~~~G~L~ 122 (155)
T PRK14634 73 TEAYVLEISSPGIGDQLSSDRDFQTFRGFPVEVSHR-DDDGSEQRLEGLLL 122 (155)
T ss_pred CCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEe-cCCCCeEEEEEEEE
Confidence 478999999999997 45677665 44567778888654
No 50
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=24.44 E-value=2.3e+02 Score=23.27 Aligned_cols=39 Identities=5% Similarity=-0.022 Sum_probs=31.4
Q ss_pred eeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 373 AIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 373 DI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
|=|++++...|.|.+.|++++.+.+..+ +..|+|+....
T Consensus 4 dW~Qs~~~V~ItI~~k~~~~~~~~v~~~----~~~l~v~~~~~ 42 (87)
T cd06488 4 DWHQTGSHVVVSVYAKNSNPELSVVEAN----STVLTIHIVFE 42 (87)
T ss_pred cEeeCCCEEEEEEEECcCCccceEEEec----CCEEEEEEECC
Confidence 5578889999999999999999988887 66777765443
No 51
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.78 E-value=1.3e+02 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=24.5
Q ss_pred ceEEEEEecC-CccCCceeEEEEEecCCCeEEEEE
Q 038468 379 EGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSC 412 (458)
Q Consensus 379 daYlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsG 412 (458)
..|.=++.|| .|+.+.++-++. .||+|+|+.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~---~~GvL~I~~ 81 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLS---SDGVLTIEA 81 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeC---CCcEEEEEe
Confidence 5678889999 788888777766 249999985
No 52
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=22.35 E-value=1.2e+02 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=24.7
Q ss_pred CceEEEEEecC-CccCCceeEEEEEecCCCeEEEEEEEccC
Q 038468 378 EEGYLIIISLP-FVDLQRVKVSWRNTLTQGIIKVSCVSTSG 417 (458)
Q Consensus 378 EdaYlfrVSLP-GVd~d~vkVS~eni~~dG~V~IsGesttg 417 (458)
...|.-.+.|| +++.+.++-+.+ ||+|+|.--....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~----~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYE----NGVLTITIPKKEE 90 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEET----TSEEEEEEEBSSS
T ss_pred cceEEEEEcCCCcCCcceEEEEec----CCEEEEEEEcccc
Confidence 34566788998 677777666665 9999999887644
No 53
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=22.34 E-value=1.2e+02 Score=25.24 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=22.8
Q ss_pred EEEEEecC-CccCCceeEEE-EEecCCCeEEEEE
Q 038468 381 YLIIISLP-FVDLQRVKVSW-RNTLTQGIIKVSC 412 (458)
Q Consensus 381 YlfrVSLP-GVd~d~vkVS~-eni~~dG~V~IsG 412 (458)
|.=++.|| +|+.+.++=+. + ||+|+|..
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~~~----dGvL~I~~ 84 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSLSA----DGMLTFSG 84 (86)
T ss_pred EEEEEECCCCCChHHeEEEeCC----CCEEEEEe
Confidence 55678998 59999887776 6 99999975
No 54
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=22.28 E-value=2.5e+02 Score=25.05 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=30.0
Q ss_pred ceEEEEE----ecCCccCC-ceeEEEEE-ecCCCeEEEEEEEccCCCceeecCceeeecC
Q 038468 379 EGYLIII----SLPFVDLQ-RVKVSWRN-TLTQGIIKVSCVSTSGMPFIKRHDRTFKLTD 432 (458)
Q Consensus 379 daYlfrV----SLPGVd~d-~vkVS~en-i~~dG~V~IsGesttg~~~ikr~~r~Fkm~d 432 (458)
.+|+++| .+.|...+ ...-.|+= ....|+|.|+|+.+..==-+-+.+++|--..
T Consensus 11 ~~~~L~I~~~G~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s~~ 70 (126)
T smart00442 11 NGQHLQILPDGTVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGSKN 70 (126)
T ss_pred CCeEEEEcCCceEecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEccc
Confidence 3467776 35666555 33333330 3345899999998833222335556665443
No 55
>PRK14640 hypothetical protein; Provisional
Probab=21.46 E-value=1.9e+02 Score=26.75 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=27.4
Q ss_pred CceEEEEEecCCccC-------------CceeEEEEEecCCCeEEEEEEEc
Q 038468 378 EEGYLIIISLPFVDL-------------QRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 378 EdaYlfrVSLPGVd~-------------d~vkVS~eni~~dG~V~IsGest 415 (458)
+++|.+.||=||+++ ..++|+.. -.-+|.-.++|.-.
T Consensus 70 ~~~Y~LEVSSPGl~RpL~~~~~f~r~~G~~v~V~l~-~~~~~~k~~~G~L~ 119 (152)
T PRK14640 70 TEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLR-MATNNRRKFKGVIK 119 (152)
T ss_pred CCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEe-cccCCceEEEEEEE
Confidence 478999999999997 45777765 34456667777664
No 56
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=21.27 E-value=1.2e+02 Score=27.69 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=19.9
Q ss_pred CCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 388 PFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 388 PGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
-|+...+++|.++ +|+|+++|...
T Consensus 38 ~~~~~~~i~V~v~----~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQVE----DGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEEe----CCEEEEEEEeC
Confidence 4667777888888 99999999875
No 57
>PRK14636 hypothetical protein; Provisional
Probab=20.83 E-value=2e+02 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.1
Q ss_pred CceEEEEEecCCccCC-------------ceeEEEEEecCCCeEEEEEEEc
Q 038468 378 EEGYLIIISLPFVDLQ-------------RVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 378 EdaYlfrVSLPGVd~d-------------~vkVS~eni~~dG~V~IsGest 415 (458)
+++|.+.||=||+++. .|+|++. ..-+|.=++.|.-.
T Consensus 71 ~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~-~~~~g~k~~~G~L~ 120 (176)
T PRK14636 71 EDAYRLEVSSPGIDRPLTRPKDFADWAGHEARIALS-EPLDGRKQFRGELK 120 (176)
T ss_pred CCCeEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEe-cccCCeEEEEEEEE
Confidence 5789999999999973 5677766 44567777777764
No 58
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=20.44 E-value=2.8e+02 Score=22.61 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=33.9
Q ss_pred cccccccCCcccc-eeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEc
Q 038468 359 GVMKNVYGPSTAA-KAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVST 415 (458)
Q Consensus 359 G~a~~~~Gp~~pa-VDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGest 415 (458)
|..+-..-|+.++ |.++|.+- ++.+++=-+.. |..+|.-.|+|...
T Consensus 2 G~L~C~~~P~~~~~V~L~e~d~----------~~~Ddll~~~~-Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 2 GQLMCGGKPAKNVKVKLWEDDY----------FDPDDLLDETK-TDSDGNFELSGSTN 48 (80)
T ss_pred eEEEeCCccCCCCEEEEEECCC----------CCCCceeEEEE-ECCCceEEEEEEcc
Confidence 3333333465655 89999985 67788777767 89999999999865
No 59
>PRK14643 hypothetical protein; Provisional
Probab=20.11 E-value=1.9e+02 Score=27.26 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=29.5
Q ss_pred CceEEEEEecCCccC-------------CceeEEEEEecCCCeEEEEEEEcc
Q 038468 378 EEGYLIIISLPFVDL-------------QRVKVSWRNTLTQGIIKVSCVSTS 416 (458)
Q Consensus 378 EdaYlfrVSLPGVd~-------------d~vkVS~eni~~dG~V~IsGestt 416 (458)
.++|.+.||=||+++ +.|+|++. -.-+|.-.++|.-..
T Consensus 77 ~~~Y~LEVSSPGleRpL~~~~df~r~~G~~V~V~l~-~~~~g~k~~~G~L~~ 127 (164)
T PRK14643 77 SEKYLLEISSSGIEKQIRSQEELVKALNQWVYVQLN-NEIKKVKEFEGYVTK 127 (164)
T ss_pred CCCeEEEecCCCCCCCCCCHHHHHHhcCCeEEEEEe-cccCCceEEEEEEEE
Confidence 478999999999987 46777776 445677778887753
Done!