Query 038470
Match_columns 168
No_of_seqs 238 out of 1463
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 99.9 3.4E-27 7.3E-32 213.4 6.9 117 51-167 21-143 (765)
2 PLN03185 phosphatidylinositol 99.9 2.1E-26 4.7E-31 208.2 5.9 117 51-167 44-166 (765)
3 COG4642 Uncharacterized protei 99.7 2.9E-16 6.3E-21 114.4 7.6 109 55-163 25-139 (139)
4 COG4642 Uncharacterized protei 99.6 5.3E-15 1.2E-19 107.8 6.3 107 61-167 8-120 (139)
5 KOG0231 Junctional membrane co 99.5 3E-15 6.5E-20 130.3 4.4 99 69-167 129-246 (455)
6 KOG0231 Junctional membrane co 99.4 3.4E-13 7.3E-18 117.6 5.3 116 52-167 133-269 (455)
7 PF02493 MORN: MORN repeat; I 98.0 2.5E-06 5.4E-11 43.9 1.4 23 127-149 1-23 (23)
8 smart00698 MORN Possible plasm 98.0 3.5E-06 7.6E-11 44.9 1.3 23 125-147 1-23 (26)
9 smart00698 MORN Possible plasm 97.9 4.8E-06 1E-10 44.4 1.2 21 148-168 1-21 (26)
10 PF02493 MORN: MORN repeat; I 97.3 7.6E-05 1.7E-09 38.2 0.2 19 150-168 1-19 (23)
11 COG2849 Uncharacterized protei 94.1 0.21 4.6E-06 40.0 6.7 93 70-162 108-208 (230)
12 COG2849 Uncharacterized protei 92.2 0.75 1.6E-05 36.9 7.3 99 68-166 82-188 (230)
13 PF07172 GRP: Glycine rich pro 57.5 11 0.00025 26.0 2.6 17 6-22 6-22 (95)
14 PRK14750 kdpF potassium-transp 41.7 49 0.0011 17.8 2.9 23 5-27 3-25 (29)
15 PRK14748 kdpF potassium-transp 41.5 47 0.001 17.9 2.8 23 5-27 3-25 (29)
16 PF12988 DUF3872: Domain of un 40.8 33 0.00071 25.4 2.9 17 70-86 73-89 (137)
17 PF07661 MORN_2: MORN repeat v 36.5 50 0.0011 15.5 2.4 19 137-155 2-21 (22)
18 PF07617 DUF1579: Protein of u 34.0 87 0.0019 23.6 4.4 28 111-138 61-89 (159)
19 PF07423 DUF1510: Protein of u 29.4 59 0.0013 26.0 2.9 26 4-29 15-40 (217)
20 COG2332 CcmE Cytochrome c-type 27.1 2.2E+02 0.0048 21.5 5.4 21 84-104 88-108 (153)
21 CHL00106 petL cytochrome b6/f 24.3 1.1E+02 0.0024 16.8 2.5 22 2-23 6-27 (31)
22 PF11395 DUF2873: Protein of u 24.2 1.2E+02 0.0027 17.3 2.8 14 3-16 9-22 (43)
23 PF05115 PetL: Cytochrome B6-F 24.0 97 0.0021 17.0 2.3 22 2-23 6-27 (31)
24 PF07438 DUF1514: Protein of u 23.7 92 0.002 20.1 2.5 17 8-24 4-20 (66)
25 MTH00261 ATP8 ATP synthase F0 21.3 1.3E+02 0.0028 18.9 2.7 13 2-14 12-24 (68)
26 PF15145 DUF4577: Domain of un 20.5 83 0.0018 22.6 2.0 26 3-28 63-88 (128)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.94 E-value=3.4e-27 Score=213.41 Aligned_cols=117 Identities=29% Similarity=0.543 Sum_probs=88.7
Q ss_pred CCCCceEEEecCccccccc--cCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEec
Q 038470 51 RPPLPVFWSIRSRPKLEKR--GNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTT 124 (168)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~--~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g 124 (168)
+......|.+|+.|+|+|. .+||.|++.|++|++|+|+|++|++||.|++. ++.+|+|+| +++||.|+++++||
T Consensus 21 hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~G~~~y~nG 100 (765)
T PLN03185 21 EGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNG 100 (765)
T ss_pred ccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEEEEeCCcccceeEEEEecc
Confidence 4556777888888888765 78888888888888888888888888888888 778888888 77777777777777
Q ss_pred cceeccccCCcccccceeeccCCCeeeeeeeeecccCCccccc
Q 038470 125 DAYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHDLGHCHF 167 (168)
Q Consensus 125 ~~y~G~~~~g~~~G~G~~~~~~G~~y~G~f~~g~~~G~G~~~~ 167 (168)
++|+|+|++|+++|.|+++++||++|+|+|++|++||.|+++|
T Consensus 101 ~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~ 143 (765)
T PLN03185 101 DVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTW 143 (765)
T ss_pred hhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEE
Confidence 7766666666666666666666666666666666666666655
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.93 E-value=2.1e-26 Score=208.20 Aligned_cols=117 Identities=24% Similarity=0.404 Sum_probs=73.9
Q ss_pred CCCCceEEEecCccccccc--cCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEec
Q 038470 51 RPPLPVFWSIRSRPKLEKR--GNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTT 124 (168)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~--~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g 124 (168)
+......|.+|+.|+|++. .+||.|++++++|++|+|+|+++++||.|++. +|++|+|+| +.+||.|++.++||
T Consensus 44 hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG 123 (765)
T PLN03185 44 HGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANG 123 (765)
T ss_pred eCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEEEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCC
Confidence 4445667777777777643 66777777777777777777777777777666 666666666 55555555555555
Q ss_pred cceeccccCCcccccceeeccCCCeeeeeeeeecccCCccccc
Q 038470 125 DAYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHDLGHCHF 167 (168)
Q Consensus 125 ~~y~G~~~~g~~~G~G~~~~~~G~~y~G~f~~g~~~G~G~~~~ 167 (168)
++|+|+|++|++||.|+++|+||++|+|+|.+|++||.|+|+|
T Consensus 124 ~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~G~y~~ 166 (765)
T PLN03185 124 NVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTW 166 (765)
T ss_pred CeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceeeEEEEE
Confidence 5555555555555555555555555555555555555555554
No 3
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.66 E-value=2.9e-16 Score=114.44 Aligned_cols=109 Identities=28% Similarity=0.378 Sum_probs=97.8
Q ss_pred ceEEEecCccccc--cccCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEecccee
Q 038470 55 PVFWSIRSRPKLE--KRGNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTTDAYA 128 (168)
Q Consensus 55 ~~~~~~g~~~~~~--~~~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g~~y~ 128 (168)
.+......++.+- .....|.+...+.+|+.|+|.++|++++|.|++. ++++|+|.| +..+|.|+....+|..|+
T Consensus 25 ~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~~F~g~G~~~~~~Gw~~~ 104 (139)
T COG4642 25 TYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSGKFRGQGTRGSFNGWLYI 104 (139)
T ss_pred eEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCccccceEeeccccCCEEe
Confidence 3444455555443 3468999999999999999999999999999999 999999999 999999999999999999
Q ss_pred ccccCCcccccceeeccCCCeeeeeeeeecccCCc
Q 038470 129 GEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHDLG 163 (168)
Q Consensus 129 G~~~~g~~~G~G~~~~~~G~~y~G~f~~g~~~G~G 163 (168)
|.|.+++.+|.|.+..+++.+|+|.|+.++.++.|
T Consensus 105 G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~~ 139 (139)
T COG4642 105 GRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKNG 139 (139)
T ss_pred eeecccccCCceeEEecCCcEEeeeEEeeecCCCC
Confidence 99999999999999999999999999999998865
No 4
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=5.3e-15 Score=107.85 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=98.3
Q ss_pred cCcccccc--ccCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEeccceeccccCC
Q 038470 61 RSRPKLEK--RGNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTTDAYAGEWSNG 134 (168)
Q Consensus 61 g~~~~~~~--~~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g~~y~G~~~~g 134 (168)
+.+|++.+ ...++..++..++++++.|..++++..|.|.+. +|.+|+|.+ ++++|.|+++++|+++|+|.|.++
T Consensus 8 g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 8 GLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred heeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCc
Confidence 44566543 377899999999999999999999999999999 899999999 999999999999999999999999
Q ss_pred cccccceeeccCCCeeeeeeeeecccCCccccc
Q 038470 135 QSHGCGVHTCEDGSRYVGEFKWGVKHDLGHCHF 167 (168)
Q Consensus 135 ~~~G~G~~~~~~G~~y~G~f~~g~~~G~G~~~~ 167 (168)
+.+|.|++...+|.+|+|.|.+++..|.|.+..
T Consensus 88 ~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~ 120 (139)
T COG4642 88 KFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLK 120 (139)
T ss_pred cccceEeeccccCCEEeeeecccccCCceeEEe
Confidence 999999999999999999999999999997643
No 5
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.55 E-value=3e-15 Score=130.33 Aligned_cols=99 Identities=38% Similarity=0.660 Sum_probs=92.4
Q ss_pred ccCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEeccceeccccCC----cccccc
Q 038470 69 RGNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTTDAYAGEWSNG----QSHGCG 140 (168)
Q Consensus 69 ~~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g~~y~G~~~~g----~~~G~G 140 (168)
....|.+...++++++|+|+|++++++|.|++. +|..|+|+| +++||+|+.+++||++|+|+|+++ .++|.+
T Consensus 129 ~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~gk~ 208 (455)
T KOG0231|consen 129 GTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRHGKG 208 (455)
T ss_pred cccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeecccccccccceE
Confidence 467888999999999999999999999999998 999999999 999999999999999999999999 899999
Q ss_pred eeeccC----------CCeeeeeeee-ecccCCccccc
Q 038470 141 VHTCED----------GSRYVGEFKW-GVKHDLGHCHF 167 (168)
Q Consensus 141 ~~~~~~----------G~~y~G~f~~-g~~~G~G~~~~ 167 (168)
.+.+.+ ..+|.++|.. ...|+.+.+.+
T Consensus 209 ~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~ 246 (455)
T KOG0231|consen 209 RYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEA 246 (455)
T ss_pred EEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEe
Confidence 999985 7899999999 99999888765
No 6
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.39 E-value=3.4e-13 Score=117.58 Aligned_cols=116 Identities=36% Similarity=0.555 Sum_probs=99.9
Q ss_pred CCCceEEEecCccccccc--cCccceEEEeecCceeeecccceeeeceeeEE--eeceecCCc--c----cccceeeeEE
Q 038470 52 PPLPVFWSIRSRPKLEKR--GNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--N----LRHGFGVYKF 121 (168)
Q Consensus 52 ~~~~~~~~~g~~~~~~~~--~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~----~~~G~G~~~~ 121 (168)
....+...+++.|++++. .++|.|+..+++|..|+|+|.++++||+|++. +|.+|+|+| + .+||.+.+.+
T Consensus 133 g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~gk~~~~~ 212 (455)
T KOG0231|consen 133 GEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRHGKGRYKF 212 (455)
T ss_pred ccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeecccccccccceEEEEE
Confidence 445677889999999865 89999999999999999999999999999999 999999999 5 7999999999
Q ss_pred Ee----------ccceeccccC-CcccccceeeccCCCeeeeeeeeecccCCccccc
Q 038470 122 YT----------TDAYAGEWSN-GQSHGCGVHTCEDGSRYVGEFKWGVKHDLGHCHF 167 (168)
Q Consensus 122 ~~----------g~~y~G~~~~-g~~~G~G~~~~~~G~~y~G~f~~g~~~G~G~~~~ 167 (168)
.+ .++|.++|.+ ++.|+.+.+..++|..|.+.|..+..+|.+.+.|
T Consensus 213 ~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~ 269 (455)
T KOG0231|consen 213 DDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHF 269 (455)
T ss_pred eccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceec
Confidence 85 6788888888 8888888887777777777777777777776655
No 7
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=98.02 E-value=2.5e-06 Score=43.93 Aligned_cols=23 Identities=61% Similarity=1.186 Sum_probs=19.1
Q ss_pred eeccccCCcccccceeeccCCCe
Q 038470 127 YAGEWSNGQSHGCGVHTCEDGSR 149 (168)
Q Consensus 127 y~G~~~~g~~~G~G~~~~~~G~~ 149 (168)
|+|+|++++++|.|+++++||++
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~~ 23 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGDR 23 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-E
T ss_pred CEEEEEECcccccEEEEeCCCCC
Confidence 78999999999999999999874
No 8
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.96 E-value=3.5e-06 Score=44.95 Aligned_cols=23 Identities=52% Similarity=1.005 Sum_probs=17.4
Q ss_pred cceeccccCCcccccceeeccCC
Q 038470 125 DAYAGEWSNGQSHGCGVHTCEDG 147 (168)
Q Consensus 125 ~~y~G~~~~g~~~G~G~~~~~~G 147 (168)
++|+|+|+++++||.|+++++|.
T Consensus 1 ~~Y~G~w~~g~~hG~G~~~~~d~ 23 (26)
T smart00698 1 DRYEGEWRNGKRHGRGVYTYANX 23 (26)
T ss_pred CeEEEEEECCeEEeeEEEEeccc
Confidence 35788888888888888887753
No 9
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.90 E-value=4.8e-06 Score=44.41 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.1
Q ss_pred CeeeeeeeeecccCCcccccC
Q 038470 148 SRYVGEFKWGVKHDLGHCHFR 168 (168)
Q Consensus 148 ~~y~G~f~~g~~~G~G~~~~~ 168 (168)
++|+|+|+++++||.|+++|+
T Consensus 1 ~~Y~G~w~~g~~hG~G~~~~~ 21 (26)
T smart00698 1 DRYEGEWRNGKRHGRGVYTYA 21 (26)
T ss_pred CeEEEEEECCeEEeeEEEEec
Confidence 479999999999999999874
No 10
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.25 E-value=7.6e-05 Score=38.21 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=17.0
Q ss_pred eeeeeeeecccCCcccccC
Q 038470 150 YVGEFKWGVKHDLGHCHFR 168 (168)
Q Consensus 150 y~G~f~~g~~~G~G~~~~~ 168 (168)
|+|+|+++++||.|+++|+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~ 19 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFP 19 (23)
T ss_dssp ECCEEETTEEECEEEEE-T
T ss_pred CEEEEEECcccccEEEEeC
Confidence 8999999999999999875
No 11
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.06 E-value=0.21 Score=40.02 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=62.1
Q ss_pred cCccceEEEeecCcee-eecccceeeeceeeEE--ee-ceecCCc-ccc-cceeeeEEEecc-ceeccccCCccccccee
Q 038470 70 GNSGCWVQVYSKGDVY-KDRYQKGKYSGSGVYY--LS-GRYEGGW-NLR-HGFGVYKFYTTD-AYAGEWSNGQSHGCGVH 142 (168)
Q Consensus 70 ~~~G~g~~~~~~G~~Y-~G~~~~g~~~G~G~~~--~g-~~y~G~~-~~~-~G~G~~~~~~g~-~y~G~~~~g~~~G~G~~ 142 (168)
..+|.....+++|... +-.+++|+.||.-... +| -..+..| +.. .|.-...+++|. .-+-.++||+++|.-..
T Consensus 108 ~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~~G~~k~ 187 (230)
T COG2849 108 KLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKKNGVVKI 187 (230)
T ss_pred ceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCcccceEEE
Confidence 4555555566666544 3456677777666655 44 3455566 333 777777777776 45667778888888887
Q ss_pred eccCCC-eeeeeeeeecccCC
Q 038470 143 TCEDGS-RYVGEFKWGVKHDL 162 (168)
Q Consensus 143 ~~~~G~-~y~G~f~~g~~~G~ 162 (168)
.+.+|. ..+..|++++++|.
T Consensus 188 Y~enGkl~~e~~~kng~~~G~ 208 (230)
T COG2849 188 YYENGKLVEEVTYKNGKLDGV 208 (230)
T ss_pred EccCCCEeEEEEecCCccccc
Confidence 778777 57788888887774
No 12
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.25 E-value=0.75 Score=36.85 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=75.1
Q ss_pred cccCccceEEEeecCc-eeeecccceeeeceeeEE--eeceecC-Cc--ccccceeeeEEEecc-ceeccccCCcccccc
Q 038470 68 KRGNSGCWVQVYSKGD-VYKDRYQKGKYSGSGVYY--LSGRYEG-GW--NLRHGFGVYKFYTTD-AYAGEWSNGQSHGCG 140 (168)
Q Consensus 68 ~~~~~G~g~~~~~~G~-~Y~G~~~~g~~~G~G~~~--~g~~y~G-~~--~~~~G~G~~~~~~g~-~y~G~~~~g~~~G~G 140 (168)
....+|.-....+||. ...-.+++|+++|.-... +|...+= .| +..||.-+..++||. ..+..|++++++|.-
T Consensus 82 ~~~~~g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~ 161 (230)
T COG2849 82 KTPFTGIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIA 161 (230)
T ss_pred ccCCcceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccE
Confidence 3456666666666664 456677888888888844 5643333 22 899999999999997 679999999999999
Q ss_pred eeeccCCC-eeeeeeeeecccCCcccc
Q 038470 141 VHTCEDGS-RYVGEFKWGVKHDLGHCH 166 (168)
Q Consensus 141 ~~~~~~G~-~y~G~f~~g~~~G~G~~~ 166 (168)
+..+++|. .-+-.+++|++.|.=..+
T Consensus 162 k~yy~nGkl~~e~~~knG~~~G~~k~Y 188 (230)
T COG2849 162 KTYYENGKLLSEVPYKNGKKNGVVKIY 188 (230)
T ss_pred EEEcCCCcEEEeecccCCcccceEEEE
Confidence 99999998 578889999988865443
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.49 E-value=11 Score=26.05 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038470 6 DFLLGFALSAALLLSLN 22 (168)
Q Consensus 6 ~~~~~~~~~~~~l~~l~ 22 (168)
++|++++|+++||++..
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555555555555543
No 14
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=41.73 E-value=49 Score=17.78 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 038470 5 LDFLLGFALSAALLLSLNLALSR 27 (168)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~ 27 (168)
+.++.+.++++++|..++.++.+
T Consensus 3 ~~vi~g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567777888888888876544
No 15
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=41.48 E-value=47 Score=17.86 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 038470 5 LDFLLGFALSAALLLSLNLALSR 27 (168)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~ 27 (168)
+.++.++++++++|..+..++.+
T Consensus 3 ~~vi~G~ilv~lLlgYLvyALi~ 25 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYALIN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677788888888888776543
No 16
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=40.79 E-value=33 Score=25.43 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=10.0
Q ss_pred cCccceEEEeecCceee
Q 038470 70 GNSGCWVQVYSKGDVYK 86 (168)
Q Consensus 70 ~~~G~g~~~~~~G~~Y~ 86 (168)
+.+|.|.....||.++.
T Consensus 73 Q~dGkG~L~~~~g~~~~ 89 (137)
T PF12988_consen 73 QPDGKGTLRMDDGTVLL 89 (137)
T ss_dssp -SSS-EEEEETTS-EE-
T ss_pred eecCCEEEEecCCcEec
Confidence 67888888777776653
No 17
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=36.54 E-value=50 Score=15.47 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=9.4
Q ss_pred cccceeeccCCC-eeeeeee
Q 038470 137 HGCGVHTCEDGS-RYVGEFK 155 (168)
Q Consensus 137 ~G~G~~~~~~G~-~y~G~f~ 155 (168)
+|.-+..++||. ..++.|+
T Consensus 2 ~G~~~~yy~nG~l~~~~~y~ 21 (22)
T PF07661_consen 2 DGEWKFYYENGKLKSEGHYK 21 (22)
T ss_pred cceEEEEeCCCCEEEEEEEE
Confidence 444455556665 3344443
No 18
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=34.04 E-value=87 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.550 Sum_probs=18.0
Q ss_pred ccccceeeeEEEe-ccceeccccCCcccc
Q 038470 111 NLRHGFGVYKFYT-TDAYAGEWSNGQSHG 138 (168)
Q Consensus 111 ~~~~G~G~~~~~~-g~~y~G~~~~g~~~G 138 (168)
...+|.+++-|.+ -..|+|.|.+.+..+
T Consensus 61 ~~~~~~~~lGYD~~~~~yvgtWidSM~t~ 89 (159)
T PF07617_consen 61 GPFEGIGTLGYDPAKKKYVGTWIDSMGTG 89 (159)
T ss_pred CceEEEEEEEECCccCeEEEEEeccCCCc
Confidence 3555666666654 457888888886554
No 19
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=29.39 E-value=59 Score=26.00 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccc
Q 038470 4 FLDFLLGFALSAALLLSLNLALSRLL 29 (168)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~ 29 (168)
++++++++.++++++++..+.+...+
T Consensus 15 iLNiaI~IV~lLIiiva~~lf~~~~~ 40 (217)
T PF07423_consen 15 ILNIAIGIVSLLIIIVAYQLFFGGDD 40 (217)
T ss_pred hHHHHHHHHHHHHHHHhhhheecCCC
Confidence 45666666665555555555443433
No 20
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=27.13 E-value=2.2e+02 Score=21.52 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=16.8
Q ss_pred eeeecccceeeeceeeEEeec
Q 038470 84 VYKDRYQKGKYSGSGVYYLSG 104 (168)
Q Consensus 84 ~Y~G~~~~g~~~G~G~~~~g~ 104 (168)
.|+|..-+--++|.|+...|.
T Consensus 88 ~Y~GiLPDLFREGQgVVa~G~ 108 (153)
T COG2332 88 SYEGILPDLFREGQGVVAEGQ 108 (153)
T ss_pred EEeccCchhhhcCCeEEEEEE
Confidence 689988888888888877443
No 21
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=24.33 E-value=1.1e+02 Score=16.76 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q 038470 2 HFFLDFLLGFALSAALLLSLNL 23 (168)
Q Consensus 2 ~f~~~~~~~~~~~~~~l~~l~~ 23 (168)
+++..++.++.+..++.+.++.
T Consensus 6 sYf~~L~~a~~~t~~lfigL~k 27 (31)
T CHL00106 6 SYFGFLLAALTITSGLFIGLSK 27 (31)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666654
No 22
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.17 E-value=1.2e+02 Score=17.35 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 038470 3 FFLDFLLGFALSAA 16 (168)
Q Consensus 3 f~~~~~~~~~~~~~ 16 (168)
|.+-+++.++++++
T Consensus 9 fylc~l~~llflv~ 22 (43)
T PF11395_consen 9 FYLCFLSFLLFLVI 22 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 23
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=24.04 E-value=97 Score=16.99 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q 038470 2 HFFLDFLLGFALSAALLLSLNL 23 (168)
Q Consensus 2 ~f~~~~~~~~~~~~~~l~~l~~ 23 (168)
++|..++.++.+..++.+.++.
T Consensus 6 sYf~fL~~al~~t~~lfiGL~k 27 (31)
T PF05115_consen 6 SYFGFLLAALTLTLVLFIGLSK 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666654
No 24
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.69 E-value=92 Score=20.07 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038470 8 LLGFALSAALLLSLNLA 24 (168)
Q Consensus 8 ~~~~~~~~~~l~~l~~~ 24 (168)
.+.+++++++|++++.+
T Consensus 4 iiSIvLai~lLI~l~~n 20 (66)
T PF07438_consen 4 IISIVLAIALLISLSVN 20 (66)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 45667777777777644
No 25
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=21.31 E-value=1.3e+02 Score=18.91 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=6.5
Q ss_pred chhHHHHHHHHHH
Q 038470 2 HFFLDFLLGFALS 14 (168)
Q Consensus 2 ~f~~~~~~~~~~~ 14 (168)
|+|+.+++.+++.
T Consensus 12 hyfvllllf~ili 24 (68)
T MTH00261 12 HYFVLLLLFFILI 24 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 26
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.54 E-value=83 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccc
Q 038470 3 FFLDFLLGFALSAALLLSLNLALSRL 28 (168)
Q Consensus 3 f~~~~~~~~~~~~~~l~~l~~~~~~~ 28 (168)
||+.++++++.+.++....-|.+.+-
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 45555555555544444444444333
Done!