Query 038470
Match_columns 168
No_of_seqs 238 out of 1463
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.9 3.8E-26 1.3E-30 187.1 4.3 109 58-166 2-121 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 2.8E-24 9.5E-29 176.0 3.5 91 78-168 1-98 (293)
3 2f69_A Histone-lysine N-methyl 99.2 4.7E-12 1.6E-16 102.1 3.1 52 108-159 3-59 (261)
4 2f69_A Histone-lysine N-methyl 98.9 2E-10 6.8E-15 92.6 1.7 50 87-136 3-59 (261)
5 1q90_L Cytochrome B6F complex 28.0 51 0.0017 17.4 2.4 22 2-23 6-27 (32)
6 2kr6_A Presenilin-1; protease, 20.3 77 0.0026 23.4 3.0 25 6-30 122-146 (176)
7 2eqj_A Metal-response element- 12.5 74 0.0025 19.7 1.0 35 121-155 24-59 (66)
8 3alz_B CDW150; viral protein-r 10.3 1.6E+02 0.0053 20.8 2.2 35 4-38 8-42 (149)
9 2xdp_A Lysine-specific demethy 6.1 3.4E+02 0.012 18.6 2.4 11 121-131 75-85 (123)
10 2l6w_A Beta-type platelet-deri 8.4 1.2E+02 0.004 16.7 0.0 20 2-21 5-24 (39)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.92 E-value=3.8e-26 Score=187.06 Aligned_cols=109 Identities=21% Similarity=0.233 Sum_probs=104.3
Q ss_pred EEecCcccccc--ccCccceEEEeecCceeeecccceeeeceeeEE--eec-eecCCc--ccccceeeeEEEeccceecc
Q 038470 58 WSIRSRPKLEK--RGNSGCWVQVYSKGDVYKDRYQKGKYSGSGVYY--LSG-RYEGGW--NLRHGFGVYKFYTTDAYAGE 130 (168)
Q Consensus 58 ~~~g~~~~~~~--~~~~G~g~~~~~~G~~Y~G~~~~g~~~G~G~~~--~g~-~y~G~~--~~~~G~G~~~~~~g~~y~G~ 130 (168)
|.+|++|++++ ..+||.|+++++||++|+|+|+++++||.|++. +|. +|+|+| +++||.|+++++||++|+|+
T Consensus 2 ~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~ 81 (293)
T 1h3i_A 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGE 81 (293)
T ss_dssp CSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEE
T ss_pred cCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEE
Confidence 67899999985 499999999999999999999999999999999 898 999999 99999999999999999999
Q ss_pred cc-CCccccc-ceeeccCCC-eeeeeeeeeccc-CCcccc
Q 038470 131 WS-NGQSHGC-GVHTCEDGS-RYVGEFKWGVKH-DLGHCH 166 (168)
Q Consensus 131 ~~-~g~~~G~-G~~~~~~G~-~y~G~f~~g~~~-G~G~~~ 166 (168)
|+ ++++||. |+++++||+ +|+|+|++|++| |.|++.
T Consensus 82 ~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~ 121 (293)
T 1h3i_A 82 VNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATL 121 (293)
T ss_dssp CCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEE
T ss_pred EeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEE
Confidence 99 9999999 999999999 699999999999 999876
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.89 E-value=2.8e-24 Score=175.99 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=88.1
Q ss_pred EeecCceeeecccceeeeceeeEE--eeceecCCc--ccccceeeeEEEecc-ceeccccCCcccccceeeccCCCeeee
Q 038470 78 VYSKGDVYKDRYQKGKYSGSGVYY--LSGRYEGGW--NLRHGFGVYKFYTTD-AYAGEWSNGQSHGCGVHTCEDGSRYVG 152 (168)
Q Consensus 78 ~~~~G~~Y~G~~~~g~~~G~G~~~--~g~~y~G~~--~~~~G~G~~~~~~g~-~y~G~~~~g~~~G~G~~~~~~G~~y~G 152 (168)
+|+||++|+|+|+++++||.|++. +|.+|+|+| +++||.|+++++||+ +|+|+|+++++||.|+++++||++|+|
T Consensus 1 ~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G 80 (293)
T 1h3i_A 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80 (293)
T ss_dssp CCSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEE
T ss_pred CcCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEE
Confidence 378999999999999999999999 899999999 999999999999999 999999999999999999999999999
Q ss_pred eee-eecccCC-cccccC
Q 038470 153 EFK-WGVKHDL-GHCHFR 168 (168)
Q Consensus 153 ~f~-~g~~~G~-G~~~~~ 168 (168)
+|+ +|++||. |+++|+
T Consensus 81 ~~~~~g~~~G~gG~~~~~ 98 (293)
T 1h3i_A 81 EVNEDGEMTGEKIAYVYP 98 (293)
T ss_dssp ECCTTSCSCEEEEEEECT
T ss_pred EEeECCeEeCCeEEEEEC
Confidence 999 9999999 998874
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.20 E-value=4.7e-12 Score=102.09 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCc--ccccceeeeEEEeccceecccc-CCccccc-ceeeccCCCe-eeeeeeeecc
Q 038470 108 GGW--NLRHGFGVYKFYTTDAYAGEWS-NGQSHGC-GVHTCEDGSR-YVGEFKWGVK 159 (168)
Q Consensus 108 G~~--~~~~G~G~~~~~~g~~y~G~~~-~g~~~G~-G~~~~~~G~~-y~G~f~~g~~ 159 (168)
|+| +++||.|+++++||++|+|+|+ +|.+||. |+|+++||++ |+|+|++|.+
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 566 7888888899999999999999 9999999 9999999998 9999998876
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.93 E-value=2e-10 Score=92.56 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=22.4
Q ss_pred ecccceeeeceeeEE--eeceecCCc---ccccce-eeeEEEeccc-eeccccCCcc
Q 038470 87 DRYQKGKYSGSGVYY--LSGRYEGGW---NLRHGF-GVYKFYTTDA-YAGEWSNGQS 136 (168)
Q Consensus 87 G~~~~g~~~G~G~~~--~g~~y~G~~---~~~~G~-G~~~~~~g~~-y~G~~~~g~~ 136 (168)
|+|++|++||.|++. +|++|+|+| +.+||. |+++|+||++ |+|+|+++.+
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 455555555555555 555555555 455555 5555555555 5555555543
No 5
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=28.01 E-value=51 Score=17.45 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q 038470 2 HFFLDFLLGFALSAALLLSLNL 23 (168)
Q Consensus 2 ~f~~~~~~~~~~~~~~l~~l~~ 23 (168)
++|..++.++.+..++.+.+++
T Consensus 6 sYf~fL~~al~~t~~lfiGL~K 27 (32)
T 1q90_L 6 SYVGLLIGALVFTLGIYLGLLK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777777777765
No 6
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=20.31 E-value=77 Score=23.41 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccce
Q 038470 6 DFLLGFALSAALLLSLNLALSRLLF 30 (168)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~~ 30 (168)
.+|+++.+.+++|.....++|.+|.
T Consensus 122 aIL~GL~~TL~lLa~~~~aLPALPi 146 (176)
T 2kr6_A 122 AILIGLCLTLLLLAIFKKALPALPI 146 (176)
T ss_dssp HHHHHHHHHHHHHHHHTCSCSSSSS
T ss_pred HHHHHHHHHHHHHhhhcccCCCCcH
Confidence 3444444444444445566677764
No 7
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=12.48 E-value=74 Score=19.69 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=16.9
Q ss_pred EEeccceeccccC-CcccccceeeccCCCeeeeeee
Q 038470 121 FYTTDAYAGEWSN-GQSHGCGVHTCEDGSRYVGEFK 155 (168)
Q Consensus 121 ~~~g~~y~G~~~~-g~~~G~G~~~~~~G~~y~G~f~ 155 (168)
|.||..|.|.-+. ++..|.-...+.|++.+=-.|+
T Consensus 24 wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 24 WSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 4455555555544 3334444555555554444443
No 8
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=10.26 E-value=1.6e+02 Score=20.81 Aligned_cols=35 Identities=14% Similarity=-0.031 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccceeeeehhcc
Q 038470 4 FLDFLLGFALSAALLLSLNLALSRLLFIRLFFVCS 38 (168)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 38 (168)
++++++.+.+++-+.....-.+.+.|.+.+.+-.+
T Consensus 8 Sl~~lLflsLa~elS~gtG~~~m~cpki~g~LGS~ 42 (149)
T 3alz_B 8 SLTFVLFLSLAFEPSYGTGGRMMNCPKIVQQLGSD 42 (149)
T ss_dssp ------------------------CCEEEEETTSC
T ss_pred ehHHHHHHHHHHhhccccCCCcccChHHHhhhccc
Confidence 44555555556666666666677888877766543
No 9
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=6.07 E-value=3.4e+02 Score=18.65 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=4.9
Q ss_pred EEeccceeccc
Q 038470 121 FYTTDAYAGEW 131 (168)
Q Consensus 121 ~~~g~~y~G~~ 131 (168)
|.||..|.+.|
T Consensus 75 W~DG~~y~a~f 85 (123)
T 2xdp_A 75 WPDGKLYGAKY 85 (123)
T ss_dssp CTTSCEEEEEE
T ss_pred cCCCCEEeEEE
Confidence 44444444333
No 10
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=8.36 E-value=1.2e+02 Score=16.73 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 038470 2 HFFLDFLLGFALSAALLLSL 21 (168)
Q Consensus 2 ~f~~~~~~~~~~~~~~l~~l 21 (168)
||+.-++++++.++++++..
T Consensus 5 ~~~~~vl~avlal~vi~iis 24 (39)
T 2l6w_A 5 PFKVVVISAILALVVLTIIS 24 (39)
Done!