Query 038470
Match_columns 168
No_of_seqs 238 out of 1463
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 19:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038470.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038470hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f69a1 b.76.2.1 (A:116-193) H 79.0 0.84 6.1E-05 27.8 3.1 46 114-159 1-49 (78)
2 d2qqra2 b.34.9.1 (A:956-1011) 9.6 1E+02 0.0076 16.9 2.4 12 144-155 12-23 (56)
3 d1gxca_ b.26.1.2 (A:) Chk2 kin 6.1 2.3E+02 0.017 16.9 3.3 31 118-149 66-97 (116)
4 d2psba1 c.153.1.1 (A:13-308) U 5.9 1.3E+02 0.0092 21.8 2.1 15 142-156 246-260 (296)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.7 1.8E+02 0.013 13.6 2.5 8 11-18 23-30 (34)
6 d1nekd_ f.21.2.2 (D:) Succinat 4.8 3.3E+02 0.024 16.2 3.3 21 2-22 13-33 (113)
7 d1g6ga_ b.26.1.2 (A:) Phosphot 4.2 2.9E+02 0.021 16.8 2.8 21 128-148 79-100 (127)
8 d2axti1 f.23.37.1 (I:1-35) Pho 4.2 2.6E+02 0.019 13.5 2.9 6 25-30 24-29 (35)
9 d1a9xb1 c.8.3.1 (B:1502-1652) 4.1 2.2E+02 0.016 18.5 2.1 22 102-123 10-33 (151)
10 d2brfa1 b.26.1.2 (A:8-108) Pol 4.0 3.7E+02 0.027 15.6 3.0 26 122-148 58-84 (101)
No 1
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.05 E-value=0.84 Score=27.78 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=36.6
Q ss_pred cceeeeEEEeccceeccc-cCCcccccce-eeccCCC-eeeeeeeeecc
Q 038470 114 HGFGVYKFYTTDAYAGEW-SNGQSHGCGV-HTCEDGS-RYVGEFKWGVK 159 (168)
Q Consensus 114 ~G~G~~~~~~g~~y~G~~-~~g~~~G~G~-~~~~~G~-~y~G~f~~g~~ 159 (168)
||..-++++||-.-.|+. .++.+.|.=+ |.++|++ .+.|.|.++.+
T Consensus 1 ~G~Cw~y~pdGGslvG~vne~gEmtGd~IAYvYPD~~talyGsF~dgem 49 (78)
T d2f69a1 1 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 49 (78)
T ss_dssp CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CceeEEEeCCCCEEEeeecCCCccccceEEEEcCCCeEEEEEEeeccce
Confidence 567778888998888887 4578888876 7889887 58888888765
No 2
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=1e+02 Score=16.89 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=5.2
Q ss_pred ccCCCeeeeeee
Q 038470 144 CEDGSRYVGEFK 155 (168)
Q Consensus 144 ~~~G~~y~G~f~ 155 (168)
|+||..|...|.
T Consensus 12 W~DG~~y~A~f~ 23 (56)
T d2qqra2 12 WTDGQVYGAKFV 23 (56)
T ss_dssp CTTSCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 444444444443
No 3
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.06 E-value=2.3e+02 Score=16.89 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=19.1
Q ss_pred eeEEEeccceeccccCCcccccce-eeccCCCe
Q 038470 118 VYKFYTTDAYAGEWSNGQSHGCGV-HTCEDGSR 149 (168)
Q Consensus 118 ~~~~~~g~~y~G~~~~g~~~G~G~-~~~~~G~~ 149 (168)
.+...|.+. .|.|.|+++-+.+. +...+|++
T Consensus 66 ~~~i~d~S~-NGT~vN~~~i~~~~~~~L~~gD~ 97 (116)
T d1gxca_ 66 IAYIEDHSG-NGTFVNTELVGKGKRRPLNNNSE 97 (116)
T ss_dssp EEEEEECCS-SCEEETTEECCTTCEEECCTTEE
T ss_pred EEEEECCCc-cCceECCEEcCCCCEEECCCCCE
Confidence 344455554 57788887777664 55666663
No 4
>d2psba1 c.153.1.1 (A:13-308) Uncharacterized protein YerB {Bacillus subtilis [TaxId: 1423]}
Probab=5.95 E-value=1.3e+02 Score=21.78 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=9.2
Q ss_pred eeccCCCeeeeeeee
Q 038470 142 HTCEDGSRYVGEFKW 156 (168)
Q Consensus 142 ~~~~~G~~y~G~f~~ 156 (168)
+.+.||..+++.|++
T Consensus 246 ~vl~dG~~~~~tW~r 260 (296)
T d2psba1 246 LLFQHGNVIETDWKQ 260 (296)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEeCCEEEEEEEEc
Confidence 455666666666654
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.75 E-value=1.8e+02 Score=13.65 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 038470 11 FALSAALL 18 (168)
Q Consensus 11 ~~~~~~~l 18 (168)
+++++++|
T Consensus 23 mlfvfial 30 (34)
T d1xmeb2 23 MLFVFIAL 30 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.75 E-value=3.3e+02 Score=16.18 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 038470 2 HFFLDFLLGFALSAALLLSLN 22 (168)
Q Consensus 2 ~f~~~~~~~~~~~~~~l~~l~ 22 (168)
|++..++.+++++.+.+..+-
T Consensus 13 ~W~~qRvSAv~l~~l~~~~~~ 33 (113)
T d1nekd_ 13 DFILVRATAIVLTLYIIYMVG 33 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677788887777766555443
No 7
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.25 E-value=2.9e+02 Score=16.80 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=10.2
Q ss_pred eccccCCcccccce-eeccCCC
Q 038470 128 AGEWSNGQSHGCGV-HTCEDGS 148 (168)
Q Consensus 128 ~G~~~~g~~~G~G~-~~~~~G~ 148 (168)
.|.|.|+.+-..+. ....+|+
T Consensus 79 NGT~vNg~~l~~~~~~~L~~GD 100 (127)
T d1g6ga_ 79 NGTWLNGQKVEKNSNQLLSQGD 100 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTC
T ss_pred ceeEECCEEecCCCEEEcCCCC
Confidence 45555555554433 3344555
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.19 E-value=2.6e+02 Score=13.49 Aligned_cols=6 Identities=33% Similarity=-0.186 Sum_probs=2.9
Q ss_pred ccccce
Q 038470 25 LSRLLF 30 (168)
Q Consensus 25 ~~~~~~ 30 (168)
+++.|+
T Consensus 24 LSnDP~ 29 (35)
T d2axti1 24 LSGDPA 29 (35)
T ss_dssp HTTCTT
T ss_pred ccCCCC
Confidence 455544
No 9
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=2.2e+02 Score=18.49 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=9.4
Q ss_pred eeceecCCc--ccccceeeeEEEe
Q 038470 102 LSGRYEGGW--NLRHGFGVYKFYT 123 (168)
Q Consensus 102 ~g~~y~G~~--~~~~G~G~~~~~~ 123 (168)
||.+|+|.. ....-.|.+.|..
T Consensus 10 dG~~f~G~~~g~~~~~~GE~vFnT 33 (151)
T d1a9xb1 10 DGTQFHGRAIGATGSAVGEVVFNT 33 (151)
T ss_dssp TSCEEEEEECSCSEEEEEEEEEEC
T ss_pred CCCEEEEEecCCCcceeEEEEEEe
Confidence 445555533 2333344444443
No 10
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.97 E-value=3.7e+02 Score=15.60 Aligned_cols=26 Identities=12% Similarity=-0.002 Sum_probs=12.8
Q ss_pred EeccceeccccCCcccccce-eeccCCC
Q 038470 122 YTTDAYAGEWSNGQSHGCGV-HTCEDGS 148 (168)
Q Consensus 122 ~~g~~y~G~~~~g~~~G~G~-~~~~~G~ 148 (168)
.+.+. .|.|.|+++-..+. ....+|+
T Consensus 58 ~~~s~-Ngt~vNg~~l~~~~~~~L~~GD 84 (101)
T d2brfa1 58 KQLGV-NPSTTGTQELKPGLEGSLGVGD 84 (101)
T ss_dssp EECSS-SCCEEC-CBCCTTCEEEEETTC
T ss_pred EcCCC-cceEEEEEEeccceeeECCCCC
Confidence 34433 56666666655543 3445555
Done!