Query 038471
Match_columns 167
No_of_seqs 137 out of 786
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 5.9E-47 1.3E-51 362.5 14.7 165 1-167 656-900 (900)
2 KOG1041 Translation initiation 100.0 1.8E-41 4E-46 323.8 12.2 165 1-167 635-876 (876)
3 cd04657 Piwi_ago-like Piwi_ago 100.0 2.2E-40 4.8E-45 294.6 12.5 121 5-125 230-426 (426)
4 PF02171 Piwi: Piwi domain; I 100.0 3.9E-36 8.6E-41 253.7 11.7 123 4-126 106-302 (302)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 7.1E-36 1.5E-40 266.5 12.0 119 4-122 256-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 2.4E-34 5.3E-39 253.3 11.8 115 9-123 206-393 (393)
7 KOG1042 Germ-line stem cell di 100.0 6.3E-35 1.4E-39 267.8 6.3 127 1-128 631-833 (845)
8 cd04659 Piwi_piwi-like_ProArk 99.6 1.8E-15 4E-20 133.6 8.1 56 66-123 346-402 (404)
9 COG1431 Argonaute homolog, imp 97.4 0.00046 9.9E-09 64.6 7.4 59 66-127 612-672 (685)
10 PF13032 DUF3893: Domain of un 95.1 0.071 1.5E-06 41.4 6.1 54 66-119 65-118 (138)
11 PRK00766 hypothetical protein; 64.7 38 0.00083 27.8 7.3 35 80-121 152-186 (194)
12 PF02772 S-AdoMet_synt_M: S-ad 61.6 6.7 0.00015 29.9 2.2 31 97-127 13-43 (120)
13 PF02590 SPOUT_MTase: Predicte 59.2 62 0.0013 25.4 7.4 80 13-93 6-91 (155)
14 COG4858 Uncharacterized membra 50.3 9 0.0002 31.9 1.4 37 42-78 31-77 (226)
15 PF01949 DUF99: Protein of unk 49.0 52 0.0011 26.8 5.6 48 66-120 129-180 (187)
16 COG0192 MetK S-adenosylmethion 46.8 15 0.00033 33.1 2.3 54 74-127 92-158 (388)
17 PF14376 Haem_bd: Haem-binding 46.0 25 0.00055 26.9 3.2 45 44-92 87-131 (137)
18 PRK11617 endonuclease V; Provi 42.2 39 0.00084 28.4 4.0 39 80-125 179-217 (224)
19 cd04186 GT_2_like_c Subfamily 33.5 1.4E+02 0.0031 21.1 5.5 75 20-94 9-99 (166)
20 KOG1759 Macrophage migration i 32.9 1.8E+02 0.004 22.1 6.0 31 66-96 52-82 (115)
21 PF12461 DUF3688: Protein of u 32.5 13 0.00029 26.8 -0.2 16 40-55 61-77 (91)
22 PTZ00104 S-adenosylmethionine 27.5 56 0.0012 29.9 2.8 75 51-127 71-163 (398)
23 PLN02243 S-adenosylmethionine 27.1 55 0.0012 29.8 2.6 74 52-127 65-158 (386)
24 PRK05250 S-adenosylmethionine 25.8 58 0.0013 29.6 2.5 75 51-127 63-154 (384)
25 COG5293 Predicted ATPase [Gene 25.4 1.4E+02 0.0031 28.1 5.0 61 31-91 504-566 (591)
26 PF12105 SpoU_methylas_C: SpoU 24.0 73 0.0016 21.2 2.2 21 76-96 8-28 (57)
27 PF06462 Hyd_WA: Propeller; I 23.7 49 0.0011 19.1 1.2 12 40-51 11-22 (32)
28 TIGR01034 metK S-adenosylmethi 23.5 68 0.0015 29.1 2.5 75 51-127 60-151 (377)
29 PRK12459 S-adenosylmethionine 23.0 70 0.0015 29.1 2.5 74 51-127 64-158 (386)
30 cd04184 GT2_RfbC_Mx_like Myxoc 22.9 3.3E+02 0.0071 20.3 9.6 57 37-94 31-108 (202)
31 KOG4220 Muscarinic acetylcholi 21.7 55 0.0012 30.5 1.6 46 66-120 428-475 (503)
32 TIGR02173 cyt_kin_arch cytidyl 21.6 2.6E+02 0.0057 20.6 5.2 48 44-92 112-167 (171)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=5.9e-47 Score=362.47 Aligned_cols=165 Identities=39% Similarity=0.624 Sum_probs=137.3
Q ss_pred CCCCCCceeeeEeeeeCCchhHHHhH---------HHHhhcc-------C--CCCceeeEEecCCChhhHHHHHHHHHHh
Q 038471 1 MDWPAVTTYRGLVSAQQHREEIIQDL---------FTVQQDP-------T--RGPVNAGMIRDGVSEGQFSHVLLSEMDA 62 (167)
Q Consensus 1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L---------~~~~~~~-------~--~~p~~iiiyRDGVsegq~~~v~~~Ev~~ 62 (167)
+||+.+++|++.+++|.+++|+|++| ..|+.++ + +.|.+|||||||||||||++|+++|+++
T Consensus 656 ~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~ 735 (900)
T PLN03202 656 RQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQ 735 (900)
T ss_pred cCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999885 3343322 2 3499999999999999999999999999
Q ss_pred hhc--------------------------------------------------------------cCCCceeEEEeeCCC
Q 038471 63 IRK--------------------------------------------------------------GTSRPVHYHVLFDEN 80 (167)
Q Consensus 63 i~~--------------------------------------------------------------GTarPt~Y~Vl~d~~ 80 (167)
|++ ||+|||||+||+||+
T Consensus 736 i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~ 815 (900)
T PLN03202 736 IIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEI 815 (900)
T ss_pred HHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCC
Confidence 987 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccC
Q 038471 81 KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNI 160 (167)
Q Consensus 81 ~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~ 160 (167)
++++|+||+|||+|||+|+|||++||||+||||||++|+|+|.|++.+...++++++++. +...+.....+..||+++
T Consensus 816 ~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~ 893 (900)
T PLN03202 816 GFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGI--TSAGAVPVPELPRLHENV 893 (900)
T ss_pred CCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccccccccc--CCCCccccccccccchhh
Confidence 999999999999999999999999999999999999999999999854322222111111 111222245678899999
Q ss_pred cCCeeeC
Q 038471 161 KDVMFFC 167 (167)
Q Consensus 161 ~~~M~f~ 167 (167)
+++||||
T Consensus 894 ~~~Mfy~ 900 (900)
T PLN03202 894 ASSMFFC 900 (900)
T ss_pred cCCeeeC
Confidence 9999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-41 Score=323.80 Aligned_cols=165 Identities=35% Similarity=0.467 Sum_probs=137.4
Q ss_pred CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc-------
Q 038471 1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------- 65 (167)
Q Consensus 1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------- 65 (167)
+|| ..++|.+.+++|.+|+|+|+++.+++.+.+ +.|.+|||||||||||||.+|+++|+.+||+
T Consensus 635 ~~~-~~~~y~g~~~~Q~~r~e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~ 713 (876)
T KOG1041|consen 635 LDW-HPQKFAGFVRFQKSRQEVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQE 713 (876)
T ss_pred ccc-cchhhcceEEEecCChhhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCC
Confidence 589 889999999999999999999777665543 3599999999999999999999999999997
Q ss_pred --------------------------------------------------------------cCCCceeEEEeeCCCCCC
Q 038471 66 --------------------------------------------------------------GTSRPVHYHVLFDENKFT 83 (167)
Q Consensus 66 --------------------------------------------------------------GTarPt~Y~Vl~d~~~~~ 83 (167)
||+|||||+||+||++++
T Consensus 714 ~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~ 793 (876)
T KOG1041|consen 714 GYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFS 793 (876)
T ss_pred CCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCC
Confidence 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCC
Q 038471 84 ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDV 163 (167)
Q Consensus 84 ~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~ 163 (167)
+|+||+|||+|||+|+||++|||||+|+||||++|+|||.+......+.+...+..+. .............+|.++.+.
T Consensus 794 ~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ 872 (876)
T KOG1041|consen 794 KDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSI-VDLDALNSEEGYKEKAGLFGT 872 (876)
T ss_pred HHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccc-cccchhhhhhHHHhhhcccce
Confidence 9999999999999999999999999999999999999999953321222221111110 122222245678899999999
Q ss_pred eeeC
Q 038471 164 MFFC 167 (167)
Q Consensus 164 M~f~ 167 (167)
||||
T Consensus 873 ~f~a 876 (876)
T KOG1041|consen 873 RFNA 876 (876)
T ss_pred EEeC
Confidence 9997
No 3
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.2e-40 Score=294.62 Aligned_cols=121 Identities=55% Similarity=0.776 Sum_probs=114.4
Q ss_pred CCceeeeEeeeeCCchhHHHhHHHHhhccC-------C-CCceeeEEecCCChhhHHHHHHHHHHhhhc-----------
Q 038471 5 AVTTYRGLVSAQQHREEIIQDLFTVQQDPT-------R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK----------- 65 (167)
Q Consensus 5 ~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~-------~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~----------- 65 (167)
++++|++.+++|++++|+|++|.+++.+++ + .|.+|||||||||||||+.|+++|+++|++
T Consensus 230 ~~~~y~~~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p 309 (426)
T cd04657 230 HLAQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKP 309 (426)
T ss_pred cccccceEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 568999999999999999999988776653 3 499999999999999999999999999997
Q ss_pred ---------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHH
Q 038471 66 ---------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQ 88 (167)
Q Consensus 66 ---------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq 88 (167)
||+|||||+||+||+++++|+||
T Consensus 310 kit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq 389 (426)
T cd04657 310 KITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQ 389 (426)
T ss_pred cEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHH
Confidence 99999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhh
Q 038471 89 KLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI 125 (167)
Q Consensus 89 ~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l 125 (167)
+|||+|||+|+||+++||+|+|+||||++|+|||.|+
T Consensus 390 ~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 390 TLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred HHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999985
No 4
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=3.9e-36 Score=253.69 Aligned_cols=123 Identities=38% Similarity=0.568 Sum_probs=109.0
Q ss_pred CCCceeeeEeeeeCCchhHHHhHHHHhhc-------cCC--CCceeeEEecCCChhhHHHHHHHHHHhhhc---------
Q 038471 4 PAVTTYRGLVSAQQHREEIIQDLFTVQQD-------PTR--GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK--------- 65 (167)
Q Consensus 4 ~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~-------~~~--~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~--------- 65 (167)
++.++|++.+++|..++|++++|.+++++ .++ .|.+|||||||||||||+.|+++|+++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~ 185 (302)
T PF02171_consen 106 SDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDY 185 (302)
T ss_dssp TTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTT
T ss_pred CccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCC
Confidence 67899999999999999999987665544 334 499999999999999999999999999996
Q ss_pred --------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHH
Q 038471 66 --------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQK 89 (167)
Q Consensus 66 --------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~ 89 (167)
||+||+||+||+|+.+++.|+||+
T Consensus 186 ~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~ 265 (302)
T PF02171_consen 186 NPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQ 265 (302)
T ss_dssp CTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHH
T ss_pred CCcEEEEEeeccccceEeecccccccCCCCCCeeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHH
Confidence 999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhh
Q 038471 90 LTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIE 126 (167)
Q Consensus 90 lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~ 126 (167)
+||.|||+|+||++++|+|+|+||||++|+|++++++
T Consensus 266 ~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 266 LTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp HHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999874
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=7.1e-36 Score=266.51 Aligned_cols=119 Identities=31% Similarity=0.421 Sum_probs=110.9
Q ss_pred CCCceeeeEeeeeCCchhH-HHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc---------
Q 038471 4 PAVTTYRGLVSAQQHREEI-IQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK--------- 65 (167)
Q Consensus 4 ~~~t~Y~s~~~~Q~~r~Ei-i~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~--------- 65 (167)
+++++|++.++.|..++|+ +++|.+++.+++ +.|.+|||||||||||||..|+++|+++|++
T Consensus 256 ~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~ 335 (448)
T cd04658 256 KSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENY 335 (448)
T ss_pred CCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4579999999999999998 888888766543 3499999999999999999999999999987
Q ss_pred -------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHHH
Q 038471 66 -------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQKL 90 (167)
Q Consensus 66 -------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~l 90 (167)
||+||+||+||+||+++++|+||+|
T Consensus 336 ~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~l 415 (448)
T cd04658 336 SPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRL 415 (448)
T ss_pred CCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999999999
Q ss_pred HHHHHhhhhccCCCCcccchHHHHHHHHHHHH
Q 038471 91 TNNLCYTLTSKFCFQSAVPPAYYAHLAAFRAR 122 (167)
Q Consensus 91 t~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r 122 (167)
||+|||+|+||+++||+|+|+||||++|+|++
T Consensus 416 t~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g 447 (448)
T cd04658 416 TYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVG 447 (448)
T ss_pred HHHhhhcccCCCCCCccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999975
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.4e-34 Score=253.31 Aligned_cols=115 Identities=35% Similarity=0.509 Sum_probs=104.1
Q ss_pred eeeEeeeeCCchhHHHhHHHHhhccC--------C-CCceeeEEecCCChhhHHHHHHHHHHhhhc--------------
Q 038471 9 YRGLVSAQQHREEIIQDLFTVQQDPT--------R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-------------- 65 (167)
Q Consensus 9 Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-------------- 65 (167)
+...++.|..++|++++|.+++++.+ + .|.+|+|||||||||||+.|+++|+++|++
T Consensus 206 ~g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~~~~~~~p~it~ 285 (393)
T cd02826 206 LGGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACEIEESYRPKLVI 285 (393)
T ss_pred cceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 34557788888898888877665443 3 589999999999999999999999999963
Q ss_pred --------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHH
Q 038471 66 --------------------------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLC 95 (167)
Q Consensus 66 --------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc 95 (167)
||+||+||+||+||+++++|+||+|||.||
T Consensus 286 Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc 365 (393)
T cd02826 286 IVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILC 365 (393)
T ss_pred EEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999
Q ss_pred hhhhccCCCCcccchHHHHHHHHHHHHh
Q 038471 96 YTLTSKFCFQSAVPPAYYAHLAAFRARY 123 (167)
Q Consensus 96 ~~y~~~~~~vs~p~P~~yA~~~a~r~r~ 123 (167)
|+|+||+++||+|+|+||||++|+|||+
T Consensus 366 ~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 366 LTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred hcccccCCCcccChHHHHHHHHHHhhcC
Confidence 9999999999999999999999999984
No 7
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.3e-35 Score=267.76 Aligned_cols=127 Identities=27% Similarity=0.398 Sum_probs=118.2
Q ss_pred CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccCC-------C-CceeeEEecCCChhhHHHHHHHHHH----hhhc---
Q 038471 1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTR-------G-PVNAGMIRDGVSEGQFSHVLLSEMD----AIRK--- 65 (167)
Q Consensus 1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~~-------~-p~~iiiyRDGVsegq~~~v~~~Ev~----~i~~--- 65 (167)
|| +++|+|||+|..|...+|+.++|+-++.++|+ . |.+||+||||||+||++.+.++||+ ++..
T Consensus 631 ~n-~~~tr~fS~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a 709 (845)
T KOG1042|consen 631 MN-NDFTRWFSRVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYA 709 (845)
T ss_pred ec-cchhhhhhheecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHH
Confidence 45 78899999999999999999999888877664 2 9999999999999999999999999 4443
Q ss_pred -------------------------------------------------------------cCCCceeEEEeeCCCCCCH
Q 038471 66 -------------------------------------------------------------GTSRPVHYHVLFDENKFTA 84 (167)
Q Consensus 66 -------------------------------------------------------------GTarPt~Y~Vl~d~~~~~~ 84 (167)
||..||||+||+|++++++
T Consensus 710 ~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~P 789 (845)
T KOG1042|consen 710 ELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSP 789 (845)
T ss_pred HhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCH
Confidence 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhcc
Q 038471 85 DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128 (167)
Q Consensus 85 d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~ 128 (167)
|.+|+|||.|||+|+||++.|++||||+||||||+..+..++.+
T Consensus 790 DkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~e 833 (845)
T KOG1042|consen 790 DKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHRE 833 (845)
T ss_pred HHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999875
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.60 E-value=1.8e-15 Score=133.60 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=52.8
Q ss_pred cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCC-CCcccchHHHHHHHHHHHHh
Q 038471 66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFC-FQSAVPPAYYAHLAAFRARY 123 (167)
Q Consensus 66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~-~vs~p~P~~yA~~~a~r~r~ 123 (167)
||++|+| |++|+.+.+.|+|++++|.||++|+|++. ++++|+||+|||++|+..+.
T Consensus 346 gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 346 GTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLKR 402 (404)
T ss_pred CCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHhc
Confidence 8999999 88899889999999999999999999999 99999999999999987654
No 9
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00046 Score=64.58 Aligned_cols=59 Identities=27% Similarity=0.225 Sum_probs=46.3
Q ss_pred cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCC--CcccchHHHHHHHHHHHHhhhhc
Q 038471 66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCF--QSAVPPAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~--vs~p~P~~yA~~~a~r~r~~l~~ 127 (167)
||-+|.. +.+.-+.-..++-.|.|.|+-|.+..... ++||||++|||++.+.++....-
T Consensus 612 gT~~pi~---~r~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~I 672 (685)
T COG1431 612 GTPRPIA---LRRRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYGVSI 672 (685)
T ss_pred CCCcccc---cccccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhccCCc
Confidence 8877765 34444444555555999999999999888 99999999999999988876543
No 10
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=95.12 E-value=0.071 Score=41.41 Aligned_cols=54 Identities=17% Similarity=-0.044 Sum_probs=46.2
Q ss_pred cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHH
Q 038471 66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAF 119 (167)
Q Consensus 66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~ 119 (167)
+.....=.+|+.=...-.+++|-.||+.||..+.-+...+.+|.|+++|.++.+
T Consensus 65 ~~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~~e 118 (138)
T PF13032_consen 65 QNPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQAKE 118 (138)
T ss_pred cCCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHHHH
Confidence 466677778888766789999999999999999999999999999998877543
No 11
>PRK00766 hypothetical protein; Provisional
Probab=64.75 E-value=38 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHH
Q 038471 80 NKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRA 121 (167)
Q Consensus 80 ~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~ 121 (167)
.+++.++-.+++-.+|-. =++|.|+..||++|...
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHh
Confidence 789999999999888852 27999999999997554
No 12
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=61.60 E-value=6.7 Score=29.91 Aligned_cols=31 Identities=16% Similarity=-0.052 Sum_probs=23.3
Q ss_pred hhhccCCCCcccchHHHHHHHHHHHHhhhhc
Q 038471 97 TLTSKFCFQSAVPPAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 97 ~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~ 127 (167)
.|+---.+-=+|.|+++||+|++|....-+.
T Consensus 13 GYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~ 43 (120)
T PF02772_consen 13 GYACDETPELMPLPIVLAHRLARRLAEVRKN 43 (120)
T ss_dssp EEEETTSTTSS-HHHHHHHHHHHHHHHHHHT
T ss_pred eeEcCCCCccCChHHHHHHHHHHHHHHHHhc
Confidence 3444455667999999999999999887664
No 13
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=59.20 E-value=62 Score=25.42 Aligned_cols=80 Identities=14% Similarity=0.247 Sum_probs=54.9
Q ss_pred eeeeCCchhHHHhHHHHhhccCCC--CceeeEEecCC--ChhhHHHHHHHHHHhhhccCCCceeEEEeeCCCC--CCHHH
Q 038471 13 VSAQQHREEIIQDLFTVQQDPTRG--PVNAGMIRDGV--SEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENK--FTADN 86 (167)
Q Consensus 13 ~~~Q~~r~Eii~~L~~~~~~~~~~--p~~iiiyRDGV--segq~~~v~~~Ev~~i~~GTarPt~Y~Vl~d~~~--~~~d~ 86 (167)
+.+...+...+..+.+.|.+.++. +..++-.+|.- +.++...+++.|-..|.+-- .|.-|.|+.|+.+ ++..+
T Consensus 6 ~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i-~~~~~~i~Ld~~Gk~~sS~~ 84 (155)
T PF02590_consen 6 IAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKI-PPNDYVILLDERGKQLSSEE 84 (155)
T ss_dssp EEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTS-HTTSEEEEE-TTSEE--HHH
T ss_pred EEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhc-cCCCEEEEEcCCCccCChHH
Confidence 456667777888888888888876 44466677775 78899999999999886532 5678999999986 77777
Q ss_pred HHHHHHH
Q 038471 87 LQKLTNN 93 (167)
Q Consensus 87 lq~lt~~ 93 (167)
+-++...
T Consensus 85 fA~~l~~ 91 (155)
T PF02590_consen 85 FAKKLER 91 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 14
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=50.34 E-value=9 Score=31.87 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=31.2
Q ss_pred EEecCCChhhHHHHHHHHHHhhhc----cC------CCceeEEEeeC
Q 038471 42 MIRDGVSEGQFSHVLLSEMDAIRK----GT------SRPVHYHVLFD 78 (167)
Q Consensus 42 iyRDGVsegq~~~v~~~Ev~~i~~----GT------arPt~Y~Vl~d 78 (167)
..-||-||.|.+.|+++=+++|-+ |+ ..||+|.+-+|
T Consensus 31 li~~gksdeeik~Il~e~ipqIleeQkkGitARkL~gtPTe~v~sf~ 77 (226)
T COG4858 31 LIGDGKSDEEIKIILEEMIPQILEEQKKGITARKLLGTPTEWVVSFD 77 (226)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhhccchHHHHcCCchHHHhhcC
Confidence 357999999999999999999976 21 26999999888
No 15
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=49.00 E-value=52 Score=26.82 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred cCCCce----eEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHH
Q 038471 66 GTSRPV----HYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFR 120 (167)
Q Consensus 66 GTarPt----~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r 120 (167)
|...|. .+.|-....+++.++..++....+ .-=++|.|+..||++|.-
T Consensus 129 g~~~~v~~~~~~~vyv~~~Gi~~~~A~~li~~~t-------~~g~iPEPLRvAhliA~~ 180 (187)
T PF01949_consen 129 GPREPVSTPTGGPVYVQSWGIDLEEARELIRRTT-------LHGKIPEPLRVAHLIASA 180 (187)
T ss_dssp ---EEE-----TTEEEEEESS-HHHHHHHHHHC--------SSSSS-HHHHHHHHHHHH
T ss_pred CCcEEeeecccccEEEEEecCCHHHHHHHHHHHh-------ccCCCcccHHHHHHHHHH
Confidence 555554 366667777899999998887655 233899999999999653
No 16
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=46.81 E-value=15 Score=33.14 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred EEeeCCCCCCHHHHHHHHHH-------------HHhhhhccCCCCcccchHHHHHHHHHHHHhhhhc
Q 038471 74 HVLFDENKFTADNLQKLTNN-------------LCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 74 ~Vl~d~~~~~~d~lq~lt~~-------------Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~ 127 (167)
.||-.=+.-++|--|.+-.+ +-|.|+-.-.+.=+|.|++|||+|++|....-+.
T Consensus 92 ~vl~~i~~QSpDIaqgVd~~~~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~ 158 (388)
T COG0192 92 AVLVAIGEQSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKN 158 (388)
T ss_pred EEEeecccCChhHHHhhhhcccchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhc
Confidence 34433334567666665544 4677777888899999999999999999887654
No 17
>PF14376 Haem_bd: Haem-binding domain
Probab=46.04 E-value=25 Score=26.91 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=34.8
Q ss_pred ecCCChhhHHHHHHHHHHhhhccCCCceeEEEeeCCCCCCHHHHHHHHH
Q 038471 44 RDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTN 92 (167)
Q Consensus 44 RDGVsegq~~~v~~~Ev~~i~~GTarPt~Y~Vl~d~~~~~~d~lq~lt~ 92 (167)
-+-+.+..+..+. ..|+.|+.-|..|+.+|-+..++.++.+.|..
T Consensus 87 ~~~~~~~~l~~i~----~~I~~g~MP~~~Y~~~H~~a~Ls~~ek~~Ll~ 131 (137)
T PF14376_consen 87 SKRKQEAKLAKIE----EVIEDGEMPPPSYTLLHWEAKLSEEEKQALLN 131 (137)
T ss_pred CcccCHHHHHHHH----HHHHcCCCChHHHhhhCCCCCCCHHHHHHHHH
Confidence 3444555554443 44777999999999999999999999998874
No 18
>PRK11617 endonuclease V; Provisional
Probab=42.16 E-value=39 Score=28.38 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhh
Q 038471 80 NKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI 125 (167)
Q Consensus 80 ~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l 125 (167)
++++.|.--.++-++|- --++|.|+..||.++.+.+...
T Consensus 179 h~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 179 HRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 35788888888888772 3489999999999998888765
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.52 E-value=1.4e+02 Score=21.12 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=43.1
Q ss_pred hhHHHhHHHHhhccCCCCceeeEEecCCChhhHHHHHHHHH--Hhhhc--------------cCCCceeEEEeeCCCCCC
Q 038471 20 EEIIQDLFTVQQDPTRGPVNAGMIRDGVSEGQFSHVLLSEM--DAIRK--------------GTSRPVHYHVLFDENKFT 83 (167)
Q Consensus 20 ~Eii~~L~~~~~~~~~~p~~iiiyRDGVsegq~~~v~~~Ev--~~i~~--------------GTarPt~Y~Vl~d~~~~~ 83 (167)
.+.+..+...+.+....+..|+|.-||-.++..+.+.+.+- .-+.. -.++-.+..++-+|..++
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~~~ 88 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVE 88 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcEEC
Confidence 44555544444333335667999999988887766654321 10110 223444445555556788
Q ss_pred HHHHHHHHHHH
Q 038471 84 ADNLQKLTNNL 94 (167)
Q Consensus 84 ~d~lq~lt~~L 94 (167)
++.++.+...+
T Consensus 89 ~~~l~~~~~~~ 99 (166)
T cd04186 89 PGALLELLDAA 99 (166)
T ss_pred ccHHHHHHHHH
Confidence 88888888653
No 20
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=32.88 E-value=1.8e+02 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=27.5
Q ss_pred cCCCceeEEEeeCCCCCCHHHHHHHHHHHHh
Q 038471 66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCY 96 (167)
Q Consensus 66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~ 96 (167)
||.-|.-|..|.---++++++=.+++-.+|-
T Consensus 52 gt~eP~A~~~l~Sig~v~~~~N~~~sa~l~~ 82 (115)
T KOG1759|consen 52 GTTEPAAYASLKSIGGVGAIVNRSYSAALTE 82 (115)
T ss_pred CCCCccEEEEEEeccccChhHhHHHHHHHHH
Confidence 9999999999999999998888888888774
No 21
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=32.52 E-value=13 Score=26.83 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=12.1
Q ss_pred eeEEe-cCCChhhHHHH
Q 038471 40 AGMIR-DGVSEGQFSHV 55 (167)
Q Consensus 40 iiiyR-DGVsegq~~~v 55 (167)
.-||| ||++|-|...|
T Consensus 61 KsvYRWdG~gEPq~P~I 77 (91)
T PF12461_consen 61 KSVYRWDGVGEPQTPTI 77 (91)
T ss_pred EEEEEecCCCCccCceE
Confidence 34788 99999887653
No 22
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=27.51 E-value=56 Score=29.85 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhhhccCCCce------eEEEeeCCCCCCHHHHHHHH------------HHHHhhhhccCCCCcccchHH
Q 038471 51 QFSHVLLSEMDAIRKGTSRPV------HYHVLFDENKFTADNLQKLT------------NNLCYTLTSKFCFQSAVPPAY 112 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarPt------~Y~Vl~d~~~~~~d~lq~lt------------~~Lc~~y~~~~~~vs~p~P~~ 112 (167)
.+..|...-|..| |-..|- ...|+-.=+.-++|--|..- ..+-|.|+---.+-=+|.|++
T Consensus 71 Di~~ivR~~i~~I--GY~~~~~gfd~~t~~v~~~i~~QSpDIa~gV~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~ 148 (398)
T PTZ00104 71 DYQKVVRDTVKEI--GYDDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVGKKEEDIGAGDQGIMFGYATDETEELMPLTHE 148 (398)
T ss_pred CHHHHHHHHHHHh--CCCCcccCcCCCceEEEecCCCCChhHhhccccccccccCCCCccceeeeeecCCCcccCCcHHH
Confidence 3667777767777 876653 24555554555666544441 123355555666788999999
Q ss_pred HHHHHHHHHHhhhhc
Q 038471 113 YAHLAAFRARYYIEG 127 (167)
Q Consensus 113 yA~~~a~r~r~~l~~ 127 (167)
|||+|++|....-+.
T Consensus 149 lAh~L~~~l~~~Rk~ 163 (398)
T PTZ00104 149 LATKLAKRLSELRKN 163 (398)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876554
No 23
>PLN02243 S-adenosylmethionine synthase
Probab=27.05 E-value=55 Score=29.76 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhccCCCce------eEEEeeCCCCCCHHHHHHHHH--------------HHHhhhhccCCCCcccchH
Q 038471 52 FSHVLLSEMDAIRKGTSRPV------HYHVLFDENKFTADNLQKLTN--------------NLCYTLTSKFCFQSAVPPA 111 (167)
Q Consensus 52 ~~~v~~~Ev~~i~~GTarPt------~Y~Vl~d~~~~~~d~lq~lt~--------------~Lc~~y~~~~~~vs~p~P~ 111 (167)
+..+...-+..| |-..|- .+.|+-.-+.-++|--|..-. .+=|.|+---.+--+|.|+
T Consensus 65 ~~~ivR~~i~~I--GY~~~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi 142 (386)
T PLN02243 65 YEKIVRDTCREI--GFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTH 142 (386)
T ss_pred HHHHHHHHHHHh--CCCCcccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHH
Confidence 666666666666 766553 235555555556665554421 2234455555678899999
Q ss_pred HHHHHHHHHHHhhhhc
Q 038471 112 YYAHLAAFRARYYIEG 127 (167)
Q Consensus 112 ~yA~~~a~r~r~~l~~ 127 (167)
++||+|++|....-+.
T Consensus 143 ~lAh~l~~~l~~~Rk~ 158 (386)
T PLN02243 143 VLATKLGARLTEVRKN 158 (386)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988876554
No 24
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=25.81 E-value=58 Score=29.60 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhhhccCCCce------eEEEeeCCCCCCHHHHHHHHH-----------HHHhhhhccCCCCcccchHHH
Q 038471 51 QFSHVLLSEMDAIRKGTSRPV------HYHVLFDENKFTADNLQKLTN-----------NLCYTLTSKFCFQSAVPPAYY 113 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarPt------~Y~Vl~d~~~~~~d~lq~lt~-----------~Lc~~y~~~~~~vs~p~P~~y 113 (167)
.+..+...=+..| |-..|. ...|+-+=+.-++|--|.+-. .+-|.|+---.+--+|.|+++
T Consensus 63 D~~~ivR~~i~~I--GY~~~~~gfd~~~~~v~~~i~~QSpdIa~gV~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 140 (384)
T PRK05250 63 DIEEIVRETIKEI--GYTSSEYGFDANTCAVLVSIGEQSPDIAQGVDRDELDEIGAGDQGIMFGYACNETPELMPLPITL 140 (384)
T ss_pred CHHHHHHHHHHHc--CCCCcccCcCCCceEEEeecCCCChhHHhhhCccccccCCCCCceeeeeeecCCCcccCChHHHH
Confidence 3555555555555 776653 446666656667777666632 123455555667889999999
Q ss_pred HHHHHHHHHhhhhc
Q 038471 114 AHLAAFRARYYIEG 127 (167)
Q Consensus 114 A~~~a~r~r~~l~~ 127 (167)
||+|++|....-+.
T Consensus 141 Ah~l~~~l~~~Rk~ 154 (384)
T PRK05250 141 AHRLVRRLAEVRKS 154 (384)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876553
No 25
>COG5293 Predicted ATPase [General function prediction only]
Probab=25.44 E-value=1.4e+02 Score=28.14 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred hccCCCCceeeEEecC-CChhhHHHHHHHHHHhhhc-cCCCceeEEEeeCCCCCCHHHHHHHH
Q 038471 31 QDPTRGPVNAGMIRDG-VSEGQFSHVLLSEMDAIRK-GTSRPVHYHVLFDENKFTADNLQKLT 91 (167)
Q Consensus 31 ~~~~~~p~~iiiyRDG-Vsegq~~~v~~~Ev~~i~~-GTarPt~Y~Vl~d~~~~~~d~lq~lt 91 (167)
..+++.|.|-|+|-|| |+||-=+.=..-=+.-+.+ --+|-..|.|-.|++.++.++++.|-
T Consensus 504 lr~~ndpspriliHDgs~f~~~d~rk~~lll~v~~~~aesrg~Qy~~Tln~~~lp~~~~~~L~ 566 (591)
T COG5293 504 LRALNDPSPRILIHDGSVFESLDDRKKELLLRVIRQYAESRGIQYVMTLNDSDLPERSVKDLP 566 (591)
T ss_pred HHHccCCCccEEEecCcccCCCcHHHHHHHHHHHHHHHHhcCCeEEEEeccccCchhhHhhcc
Confidence 3447889988889999 8877432211111111212 34677899999999999999999874
No 26
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=23.99 E-value=73 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=16.8
Q ss_pred eeCCCCCCHHHHHHHHHHHHh
Q 038471 76 LFDENKFTADNLQKLTNNLCY 96 (167)
Q Consensus 76 l~d~~~~~~d~lq~lt~~Lc~ 96 (167)
+++...++.++.+++.|..||
T Consensus 8 mY~~~~L~~e~~~~lLFEw~y 28 (57)
T PF12105_consen 8 MYDRPRLSEEEYQRLLFEWGY 28 (57)
T ss_dssp TTSS-SS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHcccC
Confidence 467778999999999999998
No 27
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=23.66 E-value=49 Score=19.09 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.4
Q ss_pred eeEEecCCChhh
Q 038471 40 AGMIRDGVSEGQ 51 (167)
Q Consensus 40 iiiyRDGVsegq 51 (167)
-++||.||++..
T Consensus 11 ~v~~R~Gis~~~ 22 (32)
T PF06462_consen 11 SVYFRTGISPSN 22 (32)
T ss_pred CEEEECcCCCCC
Confidence 578999999753
No 28
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=23.47 E-value=68 Score=29.08 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhhhccCCCce------eEEEeeCCCCCCHHHHHHHH-----------HHHHhhhhccCCCCcccchHHH
Q 038471 51 QFSHVLLSEMDAIRKGTSRPV------HYHVLFDENKFTADNLQKLT-----------NNLCYTLTSKFCFQSAVPPAYY 113 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarPt------~Y~Vl~d~~~~~~d~lq~lt-----------~~Lc~~y~~~~~~vs~p~P~~y 113 (167)
.+..|..+-+..| |--.|. ...|+-.=+.-++|--|..- ..+=|.|+---.+--+|.|+++
T Consensus 60 d~~~ivR~~i~~I--GY~~~~~gfd~~t~~v~~~i~~QSpDIa~gV~~~~~~~iGAGDQGimfGYA~~ET~e~MPl~i~l 137 (377)
T TIGR01034 60 DIQEVARNTIKDI--GYTDSDYGFDAKTCAVLVAIGNQSPDIAQGVDKANPEEQGAGDQGIMFGYATNETPELMPLPITL 137 (377)
T ss_pred CHHHHHHHHHHHh--CCCCcccCCCCCceEEEecCCCCChHHHhccccCccccCCCCcceeeeeeecCCCcccCChHHHH
Confidence 4666766666666 776653 23565555556666655552 1223444445567789999999
Q ss_pred HHHHHHHHHhhhhc
Q 038471 114 AHLAAFRARYYIEG 127 (167)
Q Consensus 114 A~~~a~r~r~~l~~ 127 (167)
||+|++|....-+.
T Consensus 138 Ah~l~~~l~~~Rk~ 151 (377)
T TIGR01034 138 AHKLLKRAAELRKS 151 (377)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876654
No 29
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=22.99 E-value=70 Score=29.09 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhhccCCCc-----eeEEEeeCCCCCCHHHHHHHH----------------HHHHhhhhccCCCCcccc
Q 038471 51 QFSHVLLSEMDAIRKGTSRP-----VHYHVLFDENKFTADNLQKLT----------------NNLCYTLTSKFCFQSAVP 109 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarP-----t~Y~Vl~d~~~~~~d~lq~lt----------------~~Lc~~y~~~~~~vs~p~ 109 (167)
.++.|...-+..| |-. + ....|+-.=+.-++|--|... ..+=|.|+---.+--+|.
T Consensus 64 di~~ivR~~i~~I--GY~-~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPl 140 (386)
T PRK12459 64 DIEKIVRNVIKEI--GYD-ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPL 140 (386)
T ss_pred CHHHHHHHHHHHh--CCC-CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCCh
Confidence 4666666666666 654 2 123444444444555444441 112345555556788999
Q ss_pred hHHHHHHHHHHHHhhhhc
Q 038471 110 PAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 110 P~~yA~~~a~r~r~~l~~ 127 (167)
|+++||+|++|....-+.
T Consensus 141 pi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 141 PIVLAHRLAKRLDQARKD 158 (386)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998776654
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=22.94 E-value=3.3e+02 Score=20.31 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=36.0
Q ss_pred CceeeEEecCCChhhHHHHHHHHHHh---hh---c--------------cCCCceeEEEeeC-CCCCCHHHHHHHHHHH
Q 038471 37 PVNAGMIRDGVSEGQFSHVLLSEMDA---IR---K--------------GTSRPVHYHVLFD-ENKFTADNLQKLTNNL 94 (167)
Q Consensus 37 p~~iiiyRDGVsegq~~~v~~~Ev~~---i~---~--------------GTarPt~Y~Vl~d-~~~~~~d~lq~lt~~L 94 (167)
+..|+|..||-+++..+.+++..... ++ . -.++ ..|.++.| +..++++.|+.+.-.+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT-GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc-CCEEEEECCCCcCChHHHHHHHHHH
Confidence 45799999999998887776643321 11 0 1233 35555555 4567888888877654
No 31
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=21.69 E-value=55 Score=30.52 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=34.6
Q ss_pred cCCCceeEEEeeCC--CCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHH
Q 038471 66 GTSRPVHYHVLFDE--NKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFR 120 (167)
Q Consensus 66 GTarPt~Y~Vl~d~--~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r 120 (167)
=|=.|=.-.||.+. .+-=++.|+.|+|-|||.. |--.|+.|| ||..
T Consensus 428 iTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYIN-------STiNP~CYA--LCNa 475 (503)
T KOG4220|consen 428 LTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYIN-------STINPLCYA--LCNA 475 (503)
T ss_pred HHcccceeeeehHhhcccccchhHhhhhhheeeec-------ccccHHHHH--HHhH
Confidence 57788777888876 2346889999999999853 345799999 5543
No 32
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=21.62 E-value=2.6e+02 Score=20.60 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=31.8
Q ss_pred ecCCChhhHHHH-HHHHHHhh---hc--c--CCCceeEEEeeCCCCCCHHHHHHHHH
Q 038471 44 RDGVSEGQFSHV-LLSEMDAI---RK--G--TSRPVHYHVLFDENKFTADNLQKLTN 92 (167)
Q Consensus 44 RDGVsegq~~~v-~~~Ev~~i---~~--G--TarPt~Y~Vl~d~~~~~~d~lq~lt~ 92 (167)
|+|.++.+...- .+.+-..- +. | -..|.+|-++.|+..+++|+ -.+.-
T Consensus 112 R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~ 167 (171)
T TIGR02173 112 REGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIIL 167 (171)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHH
Confidence 789988877653 22221111 11 2 35689999999999999999 55543
Done!