Query 038471
Match_columns 167
No_of_seqs 137 out of 786
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 7.6E-48 2.6E-52 365.9 10.3 166 1-167 620-861 (861)
2 2yha_A Post-transcriptional ge 100.0 6.5E-47 2.2E-51 332.4 7.4 160 4-167 191-388 (388)
3 2yhb_A QDE-2, post-transcripti 100.0 8.3E-47 2.8E-51 336.4 5.9 160 4-167 191-437 (437)
4 4f1n_A Kpago; argonaute, RNAI, 100.0 3.2E-46 1.1E-50 359.6 6.2 166 1-167 788-1046(1046)
5 1yvu_A Hypothetical protein AQ 99.9 1.7E-26 5.7E-31 215.9 12.6 113 5-127 527-695 (706)
6 3ho1_A Argonaute; argonaute, p 99.9 4.1E-24 1.4E-28 198.9 10.2 114 6-123 500-668 (685)
7 1u04_A Argonaute, hypothetical 99.9 6.1E-24 2.1E-28 200.0 9.1 117 5-128 582-759 (771)
8 2w42_A PIWI, putative uncharac 99.7 3.3E-18 1.1E-22 151.7 7.3 113 10-128 210-408 (427)
9 3ga2_A Endonuclease V; alpha-b 48.1 20 0.00068 29.4 4.3 42 81-128 195-236 (246)
10 2w36_A Endonuclease V; hypoxan 35.9 32 0.0011 27.7 3.7 38 80-123 185-222 (225)
11 3s82_A S-adenosylmethionine sy 30.7 26 0.00088 30.8 2.5 32 96-127 143-174 (407)
12 3iml_A S-adenosylmethionine sy 30.4 26 0.0009 30.6 2.5 73 51-127 69-162 (399)
13 1p7l_A S-adenosylmethionine sy 28.1 31 0.001 30.1 2.5 73 51-127 63-154 (383)
14 2p02_A S-adenosylmethionine sy 28.0 31 0.0011 30.2 2.5 73 51-127 79-171 (396)
15 3so4_A Methionine-adenosyltran 28.0 29 0.001 30.5 2.3 73 51-127 83-175 (415)
16 1o6d_A Hypothetical UPF0247 pr 26.7 2.1E+02 0.0071 21.6 7.1 79 13-94 8-90 (163)
17 4fak_A Ribosomal RNA large sub 24.9 2.2E+02 0.0077 21.4 7.1 80 13-93 10-98 (163)
18 4fk7_A Toxin certhrax, putativ 23.2 61 0.0021 24.8 3.2 28 23-52 81-108 (229)
19 1to0_A Hypothetical UPF0247 pr 23.0 1.7E+02 0.0059 22.1 5.7 81 13-94 6-95 (167)
20 1nyc_A Staphostatin B, cystein 20.5 36 0.0012 24.0 1.2 11 66-76 100-110 (111)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=7.6e-48 Score=365.86 Aligned_cols=166 Identities=42% Similarity=0.605 Sum_probs=133.3
Q ss_pred CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc-------
Q 038471 1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------- 65 (167)
Q Consensus 1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------- 65 (167)
+||. +++|++.+++|.+++|+|++|.+++.+++ ..|.+|||||||||||||++|+++|+++|++
T Consensus 620 ~d~~-~~~y~~~~~~Q~~~~E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~ 698 (861)
T 4f3t_A 620 MDAH-PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEK 698 (861)
T ss_dssp CSSS-SCCEEEEEEEESTTCCSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCC-cceEEEEEEEcCCCccHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4664 79999999999999999999988766543 3499999999999999999999999999986
Q ss_pred -------------------------------------------------------------cCCCceeEEEeeCCCCCCH
Q 038471 66 -------------------------------------------------------------GTSRPVHYHVLFDENKFTA 84 (167)
Q Consensus 66 -------------------------------------------------------------GTarPt~Y~Vl~d~~~~~~ 84 (167)
||+|||||+||+||+++++
T Consensus 699 ~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~ 778 (861)
T 4f3t_A 699 DYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSS 778 (861)
T ss_dssp TCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCH
T ss_pred CCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCH
Confidence 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCCe
Q 038471 85 DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVM 164 (167)
Q Consensus 85 d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~M 164 (167)
|+||+|||+|||+|+||+++||||+||||||++|+|||.|+....++++++++.++.+.............||++++++|
T Consensus 779 d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M 858 (861)
T 4f3t_A 779 DELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTM 858 (861)
T ss_dssp HHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTT
T ss_pred HHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCc
Confidence 99999999999999999999999999999999999999999865433333222222111111111223357999999999
Q ss_pred eeC
Q 038471 165 FFC 167 (167)
Q Consensus 165 ~f~ 167 (167)
||+
T Consensus 859 ~y~ 861 (861)
T 4f3t_A 859 YFA 861 (861)
T ss_dssp TTC
T ss_pred eeC
Confidence 996
No 2
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=6.5e-47 Score=332.45 Aligned_cols=160 Identities=29% Similarity=0.403 Sum_probs=118.8
Q ss_pred CCCceeeeEeeeeC-CchhHHHhHHHHh-------hc---cC-CCCceeeEEecCCChhhHHHHHHHHHHhhhc------
Q 038471 4 PAVTTYRGLVSAQQ-HREEIIQDLFTVQ-------QD---PT-RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------ 65 (167)
Q Consensus 4 ~~~t~Y~s~~~~Q~-~r~Eii~~L~~~~-------~~---~~-~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------ 65 (167)
+.+++|.+.+++|. +++|+|++|.+++ ++ .+ +.|.+|||||||||||||++|+++|+++|++
T Consensus 191 ~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~ 270 (388)
T 2yha_A 191 QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVY 270 (388)
T ss_dssp TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHS
T ss_pred CCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999 9999999987765 33 22 2499999999999999999999999999997
Q ss_pred -cC-------------CCceeEEEeeCCC------CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhh
Q 038471 66 -GT-------------SRPVHYHVLFDEN------KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI 125 (167)
Q Consensus 66 -GT-------------arPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l 125 (167)
+. +|||||+||+||+ ++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||
T Consensus 271 ~~~~~P~it~Ivv~KrarPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l 350 (388)
T 2yha_A 271 PAGKLPRITLIVSVKGSGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQ 350 (388)
T ss_dssp CTTCCCEEEEEEEC------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHC
T ss_pred cccCCCcEEEEEeccccCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHh
Confidence 33 9999999999998 999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCCeeeC
Q 038471 126 EGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC 167 (167)
Q Consensus 126 ~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~M~f~ 167 (167)
.+..++..++++.++ +.. .....+..+|++++++||||
T Consensus 351 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 351 KELFDALDENDSVKT-DDF---ARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHHHHTTCSCCCH-HHH---HHHHHHTCCCGGGTTSCTTC
T ss_pred hhhccCCCcccccCC-Ccc---cccccccccCHHhcCCceeC
Confidence 864332222222111 110 11123568999999999997
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=8.3e-47 Score=336.36 Aligned_cols=160 Identities=30% Similarity=0.438 Sum_probs=117.1
Q ss_pred CCCceeeeEeeeeC-CchhHHHhHHHHhh-------c---cCC-CCceeeEEecCCChhhHHHHHHHHHHhhhc------
Q 038471 4 PAVTTYRGLVSAQQ-HREEIIQDLFTVQQ-------D---PTR-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------ 65 (167)
Q Consensus 4 ~~~t~Y~s~~~~Q~-~r~Eii~~L~~~~~-------~---~~~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------ 65 (167)
+.+++|.+.+++|. +++|+|++|.+++. + .++ .|.+|||||||||||||++|+++|+++|++
T Consensus 191 ~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~ 270 (437)
T 2yhb_A 191 QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVY 270 (437)
T ss_dssp TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHS
T ss_pred CCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999 99999999877653 3 222 399999999999999999999999999975
Q ss_pred ---------------------------------------------------------------cCCCceeEEEeeCCC--
Q 038471 66 ---------------------------------------------------------------GTSRPVHYHVLFDEN-- 80 (167)
Q Consensus 66 ---------------------------------------------------------------GTarPt~Y~Vl~d~~-- 80 (167)
||+|||||+||+||+
T Consensus 271 ~~~~~p~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~ 350 (437)
T 2yhb_A 271 PAGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFR 350 (437)
T ss_dssp CTTCCCEEEEEEEC-------------------------------------------------------CEEEEEESSHH
T ss_pred cccCCCCEEEEEEEecccceeccCCccccccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccc
Confidence 999999999999998
Q ss_pred ----CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCC
Q 038471 81 ----KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPL 156 (167)
Q Consensus 81 ----~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v 156 (167)
++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||....++..++++. +++.. .....+..+
T Consensus 351 ~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~-~~~~~---~~~~~~~~~ 426 (437)
T 2yhb_A 351 ADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSV-KTDDF---ARWGNSGAV 426 (437)
T ss_dssp HHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCC-CHHHH---HHHHHHTSC
T ss_pred cccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCcc-CCCCc---ccccccccc
Confidence 9999999999999999999999999999999999999999999998643221111111 11111 111235689
Q ss_pred CccCcCCeeeC
Q 038471 157 SPNIKDVMFFC 167 (167)
Q Consensus 157 ~~~~~~~M~f~ 167 (167)
|++++++||||
T Consensus 427 ~~~l~~~mfyl 437 (437)
T 2yhb_A 427 HPNLRNSMYYI 437 (437)
T ss_dssp CGGGTTSCTTC
T ss_pred CHhhcCCceeC
Confidence 99999999997
No 4
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.2e-46 Score=359.64 Aligned_cols=166 Identities=33% Similarity=0.471 Sum_probs=136.6
Q ss_pred CCCCCCceeeeEeeeeCC-chhHHHhHHHHhhc-------cCC--CCceeeEEecCCChhhHHHHHHHHHHhhhc-----
Q 038471 1 MDWPAVTTYRGLVSAQQH-REEIIQDLFTVQQD-------PTR--GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK----- 65 (167)
Q Consensus 1 ~~~~~~t~Y~s~~~~Q~~-r~Eii~~L~~~~~~-------~~~--~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~----- 65 (167)
+|| ++++|++.+++|.. ++|+|++|.+|+.+ .++ .|.+|||||||||||||++|+++|+++|++
T Consensus 788 ~d~-~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~ 866 (1046)
T 4f1n_A 788 YDD-KFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKF 866 (1046)
T ss_dssp CSS-SCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHH
T ss_pred ECC-CcCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 476 57999999999998 99999987665543 322 399999999999999999999999999863
Q ss_pred -----------------------------------------------------------------------------cCC
Q 038471 66 -----------------------------------------------------------------------------GTS 68 (167)
Q Consensus 66 -----------------------------------------------------------------------------GTa 68 (167)
||+
T Consensus 867 ~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTa 946 (1046)
T 4f1n_A 867 GPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTG 946 (1046)
T ss_dssp THHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSC
T ss_pred hhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcc
Confidence 999
Q ss_pred CceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCC-CCCCCCCCCccCcc
Q 038471 69 RPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAA-DAGPGKGAAVRGEA 147 (167)
Q Consensus 69 rPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s-~~~s~~~~~~~~~~ 147 (167)
|||||+||+||+++++|+||+|||+|||+|+||+++||||+||||||++|+|||.|+...+++.+ +.++.+++.+....
T Consensus 947 rPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1046)
T 4f1n_A 947 VPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTV 1026 (1046)
T ss_dssp CCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CC
T ss_pred cCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999997654322 22332222122123
Q ss_pred cCCCCCCCCCccCcCCeeeC
Q 038471 148 ASVRPLPPLSPNIKDVMFFC 167 (167)
Q Consensus 148 ~~~~~~~~v~~~~~~~M~f~ 167 (167)
...++++.||++++++||||
T Consensus 1027 ~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1027 SKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp CHHHHSCCCCGGGTTSCTTC
T ss_pred CcccccchhhhhhccceeeC
Confidence 33477899999999999997
No 5
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=99.94 E-value=1.7e-26 Score=215.89 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=95.6
Q ss_pred CCceeeeEeeeeCCchhHHHhHHHH----hhccC-CCCceeeEEecCCChhhHHHHHHHHHHhhhc--------------
Q 038471 5 AVTTYRGLVSAQQHREEIIQDLFTV----QQDPT-RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-------------- 65 (167)
Q Consensus 5 ~~t~Y~s~~~~Q~~r~Eii~~L~~~----~~~~~-~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-------------- 65 (167)
.+++|.++.+.| .++|++++|... +++.+ ..|.+|||||||||| ++|+++|++
T Consensus 527 ~~~~~~~~~~~q-~~~ei~~~l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~~~pkit~IvV 598 (706)
T 1yvu_A 527 ELVRYYLTSYPA-FGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELYGYSLELLEI 598 (706)
T ss_dssp CEEEEEEEEECS-CTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CEEEEEEEeccc-ccchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHHcCCcEEEEEE
Confidence 467888887655 478898885443 33333 349999999999999 889999876
Q ss_pred -------------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCccc
Q 038471 66 -------------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAV 108 (167)
Q Consensus 66 -------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p 108 (167)
||+||+||+|+.+|. ++|+||++||+|||+|+||+++||+|
T Consensus 599 ~Krh~tRfF~~~np~pGTvVD~~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslP 676 (706)
T 1yvu_A 599 IKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLP 676 (706)
T ss_dssp ECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSC
T ss_pred EeccCeeEECCCCCCCeEEEEcCCCeEEEEecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccC
Confidence 999999999444444 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhc
Q 038471 109 PPAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 109 ~P~~yA~~~a~r~r~~l~~ 127 (167)
+||||||++|+|++.+++.
T Consensus 677 aPiyYAhllA~r~~~~~~p 695 (706)
T 1yvu_A 677 ATVHYSDKITKLMLRGIEP 695 (706)
T ss_dssp TTTTTHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHhcCCc
Confidence 9999999999999998874
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=99.90 E-value=4.1e-24 Score=198.91 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=90.8
Q ss_pred CceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCC-ChhhHHHHHHHHHHhhhc-----------
Q 038471 6 VTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGV-SEGQFSHVLLSEMDAIRK----------- 65 (167)
Q Consensus 6 ~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGV-segq~~~v~~~Ev~~i~~----------- 65 (167)
.++| +.++.|...++.+++|..++.+++ ..|.+|||||||| +|||++.|++ .+..+.-
T Consensus 500 ~~~~-~~~~~Q~~e~l~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~~I~e-Al~~~~~~~t~IvVqKRh 577 (685)
T 3ho1_A 500 HLLW-TLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALE-ALAREGIAYDLVSVRKSG 577 (685)
T ss_dssp CCEE-ECCCCCCSCCCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGHHHHH-HHHHTTCEEEEEEEESSC
T ss_pred EEEe-EEEEccCCcEecHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHH-HHHhcCCCEEEEEEEecC
Confidence 3443 445677665556677777655443 3499999999999 8999999863 3433211
Q ss_pred ----------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccC-CCCcccch
Q 038471 66 ----------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKF-CFQSAVPP 110 (167)
Q Consensus 66 ----------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~-~~vs~p~P 110 (167)
||++|+||+ +|++++++|+||++||+|||+|+||+ ++||+|+|
T Consensus 578 ~tRfF~~n~pp~~Gt~v~~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP 655 (685)
T 3ho1_A 578 GGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAP 655 (685)
T ss_dssp CCCEEESSSCCCSSEEEECSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHH
T ss_pred CceEecCCCCCCCeEEEeCCCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChH
Confidence 999999998 89999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHh
Q 038471 111 AYYAHLAAFRARY 123 (167)
Q Consensus 111 ~~yA~~~a~r~r~ 123 (167)
|||||++|++...
T Consensus 656 ~~YAhklAk~~~r 668 (685)
T 3ho1_A 656 LHLADRLVKEVGR 668 (685)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999954443
No 7
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=99.89 E-value=6.1e-24 Score=200.04 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCceeeeEeeeeCCchhH-----HHhHHHHhhccC-C-CCceeeEEecCCChhhHHHHHHHHHHhhhc------------
Q 038471 5 AVTTYRGLVSAQQHREEI-----IQDLFTVQQDPT-R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------------ 65 (167)
Q Consensus 5 ~~t~Y~s~~~~Q~~r~Ei-----i~~L~~~~~~~~-~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------------ 65 (167)
...+|.+.+..|.+++++ +..+...|++.+ + .|.+|||||||+ |+++|+++|++
T Consensus 582 ~~~~~~s~~~~~~~~E~i~l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~~p~itfI 654 (771)
T 1u04_A 582 YIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMFDIEVVTM 654 (771)
T ss_dssp CEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEEEEEeecCCccEEcHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhcCCCEEEE
Confidence 345777766656565543 222333445553 3 499999999995 44555555542
Q ss_pred -----------------------------------cCCCceeE--EEeeCCCCCC----HHHHHHHHHHHHhhhhccCC-
Q 038471 66 -----------------------------------GTSRPVHY--HVLFDENKFT----ADNLQKLTNNLCYTLTSKFC- 103 (167)
Q Consensus 66 -----------------------------------GTarPt~Y--~Vl~d~~~~~----~d~lq~lt~~Lc~~y~~~~~- 103 (167)
||++|+|| +|++|+++++ +|+||++||+|||+|+||++
T Consensus 655 vV~Krh~tRfF~~~~pGTVV~~DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~ 734 (771)
T 1u04_A 655 DVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISA 734 (771)
T ss_dssp EEESCCCCCBSSCSCEEEEETTEEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSC
T ss_pred EEEecCceeeecCCCCeeEEeCCEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCC
Confidence 99999999 9999999999 99999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHhhhhcc
Q 038471 104 FQSAVPPAYYAHLAAFRARYYIEGE 128 (167)
Q Consensus 104 ~vs~p~P~~yA~~~a~r~r~~l~~~ 128 (167)
+||+||||||||++|++++.+++.+
T Consensus 735 svrvPAP~~YAhklA~lvgq~~~~~ 759 (771)
T 1u04_A 735 DMRLPAPVHYAHKFANAIRNEWKIK 759 (771)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred CccCCchHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999988753
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.73 E-value=3.3e-18 Score=151.66 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=89.1
Q ss_pred eeEeeeeCCchhHHHhHHHHhhc--------cCCC-Cce--eeEEecCCChhhHHHHHHHHHHhhhc-------------
Q 038471 10 RGLVSAQQHREEIIQDLFTVQQD--------PTRG-PVN--AGMIRDGVSEGQFSHVLLSEMDAIRK------------- 65 (167)
Q Consensus 10 ~s~~~~Q~~r~Eii~~L~~~~~~--------~~~~-p~~--iiiyRDGVsegq~~~v~~~Ev~~i~~------------- 65 (167)
...++.|.+++|++++|..++.+ .++. |.+ |||| ||+..|.++|+++|++
T Consensus 210 ~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~ 283 (427)
T 2w42_A 210 WNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVSR 283 (427)
T ss_dssp EEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred EEEEEecCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccCC
Confidence 34455566789999998776543 3332 664 4776 8888888999888762
Q ss_pred ------------------------------------------------c------CCC---ceeEEEeeC----CCCC-C
Q 038471 66 ------------------------------------------------G------TSR---PVHYHVLFD----ENKF-T 83 (167)
Q Consensus 66 ------------------------------------------------G------Tar---Pt~Y~Vl~d----~~~~-~ 83 (167)
+ +.+ ||||+|++| ++++ +
T Consensus 284 ~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~ 363 (427)
T 2w42_A 284 DVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHN 363 (427)
T ss_dssp TCEEEEEEEEECCCEEEEC--------CCSEEEESSSSEEEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHH
T ss_pred CCCEEEEEEEccccceeeecCCCCCCCCCceEEEcCCCeEEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCC
Confidence 3 433 999999995 4444 5
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhcc
Q 038471 84 ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128 (167)
Q Consensus 84 ~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~ 128 (167)
+|+||++||+|||++.|++.++++|+||||||++|++++...+-+
T Consensus 364 ~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~ 408 (427)
T 2w42_A 364 VHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYG 408 (427)
T ss_dssp HHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhcC
Confidence 899999999999999999999999999999999999999977654
No 9
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=48.12 E-value=20 Score=29.39 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhcc
Q 038471 81 KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128 (167)
Q Consensus 81 ~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~ 128 (167)
.++.|.--.++-.+| ++.-++|.|+..||++|...|..+...
T Consensus 195 ~i~l~~A~~~v~~~~------~~~yRlPEP~R~AD~~a~~~r~~l~~~ 236 (246)
T 3ga2_A 195 YIDLDSSYQITMSLI------NQESRLPIPVRLADLETHVLRTFYQKN 236 (246)
T ss_dssp SSCHHHHHHHHHHTC------CTTCSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc------cCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 468888888887766 234689999999999999999988764
No 10
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=35.95 E-value=32 Score=27.66 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHh
Q 038471 80 NKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARY 123 (167)
Q Consensus 80 ~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~ 123 (167)
++++.+.--+++-.+|- +--++|.|+..||++|.+.+.
T Consensus 185 h~i~l~~A~~~v~~~~~------~~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 185 HLMDVESSKRLIKAFTL------PGRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp SSCCHHHHHHHHHHHCC------TTCSSCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhhh
Confidence 35788888888887661 235899999999999988654
No 11
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=30.71 E-value=26 Score=30.76 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=25.9
Q ss_pred hhhhccCCCCcccchHHHHHHHHHHHHhhhhc
Q 038471 96 YTLTSKFCFQSAVPPAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 96 ~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~ 127 (167)
|.|+---.+-=+|.|++|||+|++|....-+.
T Consensus 143 FGYA~~ET~elMPlpi~lAH~L~~rla~~Rk~ 174 (407)
T 3s82_A 143 FGYAINDTPERMPLPIALAHRLSRRLTEVRKN 174 (407)
T ss_dssp EEEEETTSTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcccCchHHHHHHHHHHHHHHHHHc
Confidence 66666667888999999999999998776543
No 12
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=30.35 E-value=26 Score=30.61 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhhccCCCc--------eeEEEeeCCCCCCHHHHHHHHHH-------------HHhhhhccCCCCcccc
Q 038471 51 QFSHVLLSEMDAIRKGTSRP--------VHYHVLFDENKFTADNLQKLTNN-------------LCYTLTSKFCFQSAVP 109 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarP--------t~Y~Vl~d~~~~~~d~lq~lt~~-------------Lc~~y~~~~~~vs~p~ 109 (167)
.++.|..+-|..| |-..+ +...+..++ -++|--|.+-.. +=|.|+---.+-=+|.
T Consensus 69 d~~~ivR~~i~~I--GY~~~~~gFd~~tc~Vl~~i~~--QSpDIaqGVd~~~~~~~~~GAGDQGiMFGYA~~ET~elMPl 144 (399)
T 3iml_A 69 DYIQIARDTIKRI--GYDNTDYGIDYRGCAVLVAYDK--QSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPL 144 (399)
T ss_dssp CHHHHHHHHHHHH--TCC---------CCEEEEEEEE--ECC------------CTTCCBSSCEEEEEEEETTSTTSCCH
T ss_pred CHHHHHHHHHhcc--CCCCcccCccCCceEEEEeccc--CChhHhhhhcccccchhhcCcCcceeEEEEecCCccccCCc
Confidence 5777777777777 65443 222333333 355555554432 2256666667788999
Q ss_pred hHHHHHHHHHHHHhhhhc
Q 038471 110 PAYYAHLAAFRARYYIEG 127 (167)
Q Consensus 110 P~~yA~~~a~r~r~~l~~ 127 (167)
|++|||+|++|....-+.
T Consensus 145 pi~lAH~L~~rl~~~Rk~ 162 (399)
T 3iml_A 145 PIHLSHRLVERQANLRRD 162 (399)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999998776543
No 13
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=28.15 E-value=31 Score=30.08 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhhccCCCc--------eeEEEeeCCCCCCHHHHHHHHH-----------HHHhhhhccCCCCcccchH
Q 038471 51 QFSHVLLSEMDAIRKGTSRP--------VHYHVLFDENKFTADNLQKLTN-----------NLCYTLTSKFCFQSAVPPA 111 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarP--------t~Y~Vl~d~~~~~~d~lq~lt~-----------~Lc~~y~~~~~~vs~p~P~ 111 (167)
.++.|...-|..| |-..+ +...+..++ -++|--|..-. .+=|.|+---.+--+|.|+
T Consensus 63 d~~~ivR~~i~~I--GY~~~~~gfd~~tc~v~~~i~~--QSpdIa~GV~~~~~~e~GAGDQGiMFGYA~~ET~e~MPlpi 138 (383)
T 1p7l_A 63 DIEEITRNTVREI--GYVHSDMGFDANSCAVLSAIGK--QSPDINQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPI 138 (383)
T ss_dssp CHHHHHHHHHHHH--TCEEGGGTEETTTSEEEEEEEC--CCHHHHHHHSCSSTTTCCCSSCEEEEEEEETTSTTSCCHHH
T ss_pred CHHHHHHHHHHHh--CCCCcccCcCCCceEEEEeccc--CChHHhhhcCcccccccccCCCceeeEEecCCCcccCchHH
Confidence 5677777767767 65443 344444433 46766665431 1223444445677899999
Q ss_pred HHHHHHHHHHHhhhhc
Q 038471 112 YYAHLAAFRARYYIEG 127 (167)
Q Consensus 112 ~yA~~~a~r~r~~l~~ 127 (167)
+|||+|++|....-+.
T Consensus 139 ~lAh~L~~rl~~~Rk~ 154 (383)
T 1p7l_A 139 TYAHRLVQRQAEVRKN 154 (383)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998877654
No 14
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=28.04 E-value=31 Score=30.19 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhhccCCCc--------eeEEEeeCCCCCCHHHHHHHHHH------------HHhhhhccCCCCcccch
Q 038471 51 QFSHVLLSEMDAIRKGTSRP--------VHYHVLFDENKFTADNLQKLTNN------------LCYTLTSKFCFQSAVPP 110 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarP--------t~Y~Vl~d~~~~~~d~lq~lt~~------------Lc~~y~~~~~~vs~p~P 110 (167)
.++.|...-|..| |-..+ +...+..++ -++|--|..-.. +=|.|+---.+--+|.|
T Consensus 79 d~~~ivR~~i~~I--GY~~~~~gfd~~tc~Vl~~i~~--QSpDIaqGV~~~~~~~e~GAGDQGiMFGYAt~ET~elMPlp 154 (396)
T 2p02_A 79 DYQKVVREAVKHI--GYDDSSKGFDYKTCNVLVALEQ--QSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLT 154 (396)
T ss_dssp CHHHHHHHHHHHH--TCEEGGGTEETTTSEEEEEEEC--CCHHHHHHHTTTCCGGGCCBSSCEEEEEEEETTSTTSSCHH
T ss_pred CHHHHHHHHHHHh--CCCCcccCCCCCceEEEEeccc--CChhhhhcccccccccccCCCCcceEEEEeCCCCcccCChH
Confidence 5677777766666 65443 344444443 477766655411 12334444467789999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 038471 111 AYYAHLAAFRARYYIEG 127 (167)
Q Consensus 111 ~~yA~~~a~r~r~~l~~ 127 (167)
++|||+|++|....-+.
T Consensus 155 i~lAh~L~~rla~~Rk~ 171 (396)
T 2p02_A 155 IVLAHKLNAKLAELRRN 171 (396)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998877554
No 15
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=27.97 E-value=29 Score=30.49 Aligned_cols=73 Identities=7% Similarity=0.052 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhhhccCCCc--------eeEEEeeCCCCCCHHHHHHHHHH------------HHhhhhccCCCCcccch
Q 038471 51 QFSHVLLSEMDAIRKGTSRP--------VHYHVLFDENKFTADNLQKLTNN------------LCYTLTSKFCFQSAVPP 110 (167)
Q Consensus 51 q~~~v~~~Ev~~i~~GTarP--------t~Y~Vl~d~~~~~~d~lq~lt~~------------Lc~~y~~~~~~vs~p~P 110 (167)
.++.|...-|..| |-..+ +...+..++ -++|--|.+-.. +=|.|+---.+-=+|.|
T Consensus 83 D~~~ivR~~ik~I--GY~~~~~gFd~~tc~Vl~~i~~--QSpDIaqGVd~~~~~~~~GAGDQGiMFGYAtdET~elMPlp 158 (415)
T 3so4_A 83 DIPKIVRGVVKSI--GYDDTNKGFDYQTCSVLSCVEQ--QSQDIAKGVHVEKKEEDIGAGDQGIMFGYATDESKEMMPLT 158 (415)
T ss_dssp CHHHHHHHHHHHH--TCEEGGGTEETTTCEEEEEEEE--ECCC-----------CCCCCSSCEEEEEEEETTSTTSSCHH
T ss_pred CHHHHHHHHHhcc--CCCCcccCccCCceEEEEeccc--CChhhhhccccccchhhcCCCcceeEEEEecCCCcccCCcH
Confidence 5777777766666 54332 334444443 345544444321 22566666677889999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 038471 111 AYYAHLAAFRARYYIEG 127 (167)
Q Consensus 111 ~~yA~~~a~r~r~~l~~ 127 (167)
++|||+|++|....-+.
T Consensus 159 i~lAH~L~~rla~~Rk~ 175 (415)
T 3so4_A 159 HVLSTKLILRLQECREK 175 (415)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999998776543
No 16
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=26.71 E-value=2.1e+02 Score=21.65 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=54.1
Q ss_pred eeeeCCchhHHHhHHHHhhccCCC--CceeeEEecCCChhhHHHHHHHHHHhhhccCCCceeEEEeeCCCC--CCHHHHH
Q 038471 13 VSAQQHREEIIQDLFTVQQDPTRG--PVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENK--FTADNLQ 88 (167)
Q Consensus 13 ~~~Q~~r~Eii~~L~~~~~~~~~~--p~~iiiyRDGVsegq~~~v~~~Ev~~i~~GTarPt~Y~Vl~d~~~--~~~d~lq 88 (167)
+.+...+ .-+.++.+-|.+.++. +..++-..|.-- ..-+.+.+.|-..|.+-- .|..|.|+.|+.+ ++.+++-
T Consensus 8 iaVGk~k-~~~~~~i~eY~kRl~~~~~lei~ev~~~k~-~~~~~~~~~E~~~il~~i-~~~~~vI~LD~~Gk~~sS~~fA 84 (163)
T 1o6d_A 8 AVIGKLD-GFIKEGIKHYEKFLRRFCKPEVLEIKRVHR-GSIEEIVRKETEDLTNRI-LPGSFVMVMDKRGEEVSSEEFA 84 (163)
T ss_dssp EEESCCC-HHHHHHHHHHHHHHTTTCEEEEEEECCCCC-SCHHHHHHHHHHHHHTTC-CTTCEEEEEEEEEEECCHHHHH
T ss_pred EEecCcc-HHHHHHHHHHHHHcCccCCceEEEecCccc-ccHHHHHHHHHHHHHHhc-CCCCEEEEEcCCCCcCCHHHHH
Confidence 4555556 6677788888888776 344555566443 556778888888887633 3457899999975 7888776
Q ss_pred HHHHHH
Q 038471 89 KLTNNL 94 (167)
Q Consensus 89 ~lt~~L 94 (167)
++...+
T Consensus 85 ~~l~~~ 90 (163)
T 1o6d_A 85 DFLKDL 90 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 17
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=24.95 E-value=2.2e+02 Score=21.43 Aligned_cols=80 Identities=11% Similarity=0.154 Sum_probs=55.1
Q ss_pred eeeeCCchhHHHhHHHHhhccCCC--CceeeEEec-----CCChhhHHHHHHHHHHhhhccCCCceeEEEeeCCCC--CC
Q 038471 13 VSAQQHREEIIQDLFTVQQDPTRG--PVNAGMIRD-----GVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENK--FT 83 (167)
Q Consensus 13 ~~~Q~~r~Eii~~L~~~~~~~~~~--p~~iiiyRD-----GVsegq~~~v~~~Ev~~i~~GTarPt~Y~Vl~d~~~--~~ 83 (167)
+.+...+..-+.++.+-|.+.++. +..++-..| +.|+.+...+++.|=..|.+- -.|.-|.|+.|+.+ ++
T Consensus 10 i~VGk~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~-i~~~~~vI~LD~~Gk~~s 88 (163)
T 4fak_A 10 LAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAK-IKPQSTVITLEIQGKMLS 88 (163)
T ss_dssp EEESCCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHT-CCTTSEEEEEEEEEEECC
T ss_pred EEecCcCcHHHHHHHHHHHHHccCcCCeEEEEecccccccccchhhHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcCC
Confidence 445555666677777788887765 444555554 467788899999998777652 34456999999975 77
Q ss_pred HHHHHHHHHH
Q 038471 84 ADNLQKLTNN 93 (167)
Q Consensus 84 ~d~lq~lt~~ 93 (167)
..++-+....
T Consensus 89 S~~fA~~l~~ 98 (163)
T 4fak_A 89 SEGLAQELNQ 98 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655543
No 18
>4fk7_A Toxin certhrax, putative ADP-ribosyltransferase certhrax; mono-ADP-ribosyltransferase; HET: P34; 1.78A {Bacillus cereus}
Probab=23.19 E-value=61 Score=24.81 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=17.7
Q ss_pred HHhHHHHhhccCCCCceeeEEecCCChhhH
Q 038471 23 IQDLFTVQQDPTRGPVNAGMIRDGVSEGQF 52 (167)
Q Consensus 23 i~~L~~~~~~~~~~p~~iiiyRDGVsegq~ 52 (167)
|+.|...+.+ ++-|..+++|| |++...|
T Consensus 81 I~~Ld~al~k-~~~~~~~~VYR-g~~~~~~ 108 (229)
T 4fk7_A 81 IKNLDAALQK-SKITENLIVYR-RVSELQF 108 (229)
T ss_dssp HHHHHHHHHT-CCCSSCEEEEE-EECGGGG
T ss_pred HHHHHHHHhh-CCCCCCeEEEe-ccchHhh
Confidence 4445555544 35578899999 6666554
No 19
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=22.97 E-value=1.7e+02 Score=22.12 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=52.5
Q ss_pred eeeeCCchhHHHhHHHHhhccCCC--CceeeEEecCCC-hh----hHHHHHHHHHHhhhccCCCceeEEEeeCCCC--CC
Q 038471 13 VSAQQHREEIIQDLFTVQQDPTRG--PVNAGMIRDGVS-EG----QFSHVLLSEMDAIRKGTSRPVHYHVLFDENK--FT 83 (167)
Q Consensus 13 ~~~Q~~r~Eii~~L~~~~~~~~~~--p~~iiiyRDGVs-eg----q~~~v~~~Ev~~i~~GTarPt~Y~Vl~d~~~--~~ 83 (167)
+.+...+..-+.++.+-|.+.++. +..++-..|.-- ++ +...+++.|-..|.+- -.|..|.|+.|+.+ ++
T Consensus 6 i~VGk~k~~~~~~~i~eY~kRl~~~~~lei~ev~~~k~~~~~~~~~~~~~~~~E~~~il~~-i~~~~~vI~LD~~Gk~~s 84 (167)
T 1to0_A 6 VTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSK-ISPDAHVIALAIEGKMKT 84 (167)
T ss_dssp EEESCCCCHHHHHHHHHHHHHHTTTSEEEEEEECCCCC---------CHHHHHHHHHHHTT-SCTTSEEEEEEEEEEECC
T ss_pred EEEcccCcHHHHHHHHHHHHHcCccCCceEEEecCccCccccccccHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCCcCC
Confidence 455555666777888888888776 344555555322 12 5567788888888663 23468999999975 78
Q ss_pred HHHHHHHHHHH
Q 038471 84 ADNLQKLTNNL 94 (167)
Q Consensus 84 ~d~lq~lt~~L 94 (167)
.+++-++...+
T Consensus 85 S~~fA~~l~~~ 95 (167)
T 1to0_A 85 SEELADTIDKL 95 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776666543
No 20
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP: b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Probab=20.49 E-value=36 Score=24.04 Aligned_cols=11 Identities=64% Similarity=1.056 Sum_probs=9.2
Q ss_pred cCCCceeEEEe
Q 038471 66 GTSRPVHYHVL 76 (167)
Q Consensus 66 GTarPt~Y~Vl 76 (167)
||+||..|--|
T Consensus 100 gtsrpi~ye~l 110 (111)
T 1nyc_A 100 GTSRPIVYERL 110 (111)
T ss_dssp CCCCCEEEEEC
T ss_pred CccCceEeeec
Confidence 99999999643
Done!