BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038474
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/637 (45%), Positives = 387/637 (60%), Gaps = 72/637 (11%)
Query: 79 TTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGK 138
TTRSWDF+GF ++ +R VES+++VGV+DTGIWP+S SF DEGF P P KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 139 NFTCNNKIIGARYYSF-----RDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGM 193
NF CN KIIGAR Y D NG D GHG++TASTAAG V A+ G+G G
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPR-DTNGHGTHTASTAAGGLVSQANLYGLGLGT 119
Query: 194 ARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAI 245
ARGGVP ARI+AY+ ILAA+DDAIADGVDII++S+G + D IAI
Sbjct: 120 ARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAI 179
Query: 246 GAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVR 305
G+FHA+ +GILT NSAGN GP T+S++PWL+SVAAST DR FV +V +GNG++
Sbjct: 180 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF-QG 238
Query: 306 YSINAFTHKGKMFPLLYGKGVTN-------SSSCTEDYA--NLVKGNIVLCDEFSGYHVA 356
SIN F + + +PL+ G+ + N S CT+ NL+KG IV+C+ G H
Sbjct: 239 VSINTFDN--QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 296
Query: 357 REA--GAAGLILKDN-RLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNP 413
++ GAAG+++ N R Y S P P+S + P+ + + Y I +P
Sbjct: 297 FKSLDGAAGVLMTSNTRDYADS--YPLPSSVLDPNDLLATLRYIYS----------IRSP 344
Query: 414 QAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIE 473
A I K++ I ++ AP+V SFSSRGPN+ D++KPDIS PGV ILAA+ +AP+
Sbjct: 345 GATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---G 401
Query: 474 DERHVKYNIISGTSMACPH-------------------------AAAWPMNSSKNTQAEF 508
R+ +NIISGTSM+CPH A PMN+ N QAEF
Sbjct: 402 IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEF 461
Query: 509 AYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPK 568
AYGSGH+NP+KA PGLVY+A + DY+ LC GY+ +R I+GD S C+ G+
Sbjct: 462 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV-W 520
Query: 569 DLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLN 628
DLNYPS VS ++F F RT+T++ STY+A I ++++V P VLSF L
Sbjct: 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLG 580
Query: 629 EKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
++KSF +TV +G G +VSA+LVW DG H VRSPI
Sbjct: 581 DRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPI 615
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 231/662 (34%), Positives = 341/662 (51%), Gaps = 95/662 (14%)
Query: 79 TTRSWDFMGFNES--ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDG 136
TT + DF+ N S + + D+IV V+D+GIWP+S SF D+G PK+WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 137 GKNFT---CNNKIIGARYYS---FRDDGN-----GSAIDEEGHGSNTASTAAGNKVKDAS 185
G F CN K+IGA Y++ +D SA D +GHG++ AS AGN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 186 FLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVD 237
G G ARG P AR++ Y+ ++AA D A+ADGVD+I+IS G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYG-YRFIP 179
Query: 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLG 297
L D I+I +F AM KG+L SAGN GP G ++ +PW++ VA+ TDR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 298 NGKTIV--VRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLV---KGNIVLCDEFSG 352
NG I + AF P++Y K +++ SS E+ + V + IV+CD+
Sbjct: 240 NGLKIRGWSLFPARAFVRDS---PVIYNKTLSDCSS--EELLSQVENPENTIVICDDNGD 294
Query: 353 YH-----VAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRS 407
+ + R A + + ++ S P P V + +I N++++
Sbjct: 295 FSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVI--------NYVKN 346
Query: 408 SIILNPQAEI-LKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP-L 465
S+ P A I + + + AP+VA+ S+RGP++ I KPDI APGV ILAAY P +
Sbjct: 347 SV--TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNV 404
Query: 466 APISRDIEDERHVKYNIISGTSMACPHAAA-----------W------------------ 496
S Y + SGTSMA PHAA W
Sbjct: 405 FATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDN 464
Query: 497 ---PMNSSKNTQA--EFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTI 551
P+ S N +A G+GH++P +A +PGLVY+A QDY+N+LCS+ + ++ +TI
Sbjct: 465 TRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Query: 552 SGDNST--CSKGSEKTSPKDLNYPSMAAQVSSGESFTI---KFPRTVTNIGLPNSTYKAR 606
+ +++ CS S DLNYPS A S +FT+ KF RTVTN+G +TYKA+
Sbjct: 525 ARSSASHNCSNPSA-----DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAK 579
Query: 607 ILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD--GSHIVRSP 664
+ +++V P++L F++ NEK+S+ +T+ G S ++ W + G+H VRSP
Sbjct: 580 LKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSP 639
Query: 665 IV 666
IV
Sbjct: 640 IV 641
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/398 (24%), Positives = 169/398 (42%), Gaps = 94/398 (23%)
Query: 142 CNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN---KVKDASFLGIGQGMARGGV 198
N+K+ A Y+ + DG +A+D+E HG++ + +GN + K+ L G +
Sbjct: 75 VNDKV--AYYHDYSKDGK-TAVDQE-HGTHVSGILSGNAPSETKEPYRL-------EGAM 123
Query: 199 PSARISAYRGEKI----------LAAFDDAIADGVDIITISLGDTSAVDLAH--DVIAIG 246
P A++ R E + A DA+ G +I +S G+ +A+ A+ D
Sbjct: 124 PEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGN-AALAYANLPDETKKA 182
Query: 247 AFHAMTKGILTVNSAGNNG-------------PKAGF--TSSIAPWLMSVAASTTDRLFV 291
+A +KG+ V SAGN+ P G T + A ++VA+ + D+
Sbjct: 183 FDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT 242
Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLL----------YGKGVTNSSSCTEDYANLVK 341
+ ++ H+ K P+L Y N +D+ + VK
Sbjct: 243 ETA------------TVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD-VK 289
Query: 342 GNIVLCD----EFSGYHV-AREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQ 396
G I L + +F A++AGA G+++ DN+ + + P P F I +
Sbjct: 290 GKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQ--DKGFPIELPNVDQMPAAF--ISRK 345
Query: 397 FYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGV 456
++ + + +I N ++L T+ SD + + FSS G +KPDI+APG
Sbjct: 346 DGLLLKDNSKKTITFNATPKVLPTA----SDTKL-SRFSSWGLT--ADGNIKPDIAAPGQ 398
Query: 457 NILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
+IL++ + + KY +SGTSM+ P A
Sbjct: 399 DILSSVA-------------NNKYAKLSGTSMSAPLVA 423
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
VA FSSRGP K +KPD+ APG IL+A S LAP S KY + GTSMA
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMAT 258
Query: 491 P 491
P
Sbjct: 259 P 259
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
VA FSSRGP K +KPD+ APG IL+A S LAP S KY GTS A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYXGGTSXAT 258
Query: 491 P 491
P
Sbjct: 259 P 259
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
++ FSSRGP + LKP++ APG I+AA + + + I D Y GT+MA
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMA 361
Query: 490 CPHAA-----------AWPMNSSK------------NTQAEFAYGSGHINPVKA 520
PH A +W + K + A+ AYG+G +N KA
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNAYKA 415
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 21/123 (17%)
Query: 157 DGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSAR---ISAYRGE---- 209
+G + D+ GHG++ AS AAG G +G P A+ I G+
Sbjct: 169 NGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGS 221
Query: 210 --KILAAFDDAIAD----GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGN 263
I+ D A+ + G+ +I +SLG + + D D ++ +A G++ V +AGN
Sbjct: 222 ISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSD-GTDSLSQAVNNAWDAGLVVVVAAGN 280
Query: 264 NGP 266
+GP
Sbjct: 281 SGP 283
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 162/398 (40%), Gaps = 94/398 (23%)
Query: 142 CNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN---KVKDASFLGIGQGMARGGV 198
N+K+ A Y+ + DG +A+D+E HG++ + +GN + K+ L G
Sbjct: 66 VNDKV--AYYHDYSKDGK-TAVDQE-HGTHVSGILSGNAPSETKEPYRL-------EGAX 114
Query: 199 PSARISAYRGEKI----------LAAFDDAIADGVDIITISLGDTSAVDLAH--DVIAIG 246
P A++ R E + A DAI G +I S G+ +A+ A+ D
Sbjct: 115 PEAQLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGN-AALAYANLPDETKKA 173
Query: 247 AFHAMTKGILTVNSAGNNG-------------PKAGF--TSSIAPWLMSVAASTTDRLFV 291
+A +KG+ V SAGN+ P G T + A ++VA+ + D+
Sbjct: 174 FDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT 233
Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLL----------YGKGVTNSSSCTEDYANLVK 341
+ V + + K P+L Y N + +D+ + VK
Sbjct: 234 ETV------------RVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKD-VK 280
Query: 342 GNIVLC-----DEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQ 396
G I L D A++AGA G+++ DN+ + + P P F I +
Sbjct: 281 GKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQ--DKGFPIELPNVDQXPAAF--ISRK 336
Query: 397 FYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGV 456
++ + + +I N ++L T+ ++ FSS G +KPDI+APG
Sbjct: 337 DGLLLKDNPQKTITFNATPKVLPTA-----SGTKLSRFSSWGLT--ADGNIKPDIAAPGQ 389
Query: 457 NILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
+IL++ + + KY +SGTS + P A
Sbjct: 390 DILSSVA-------------NNKYAKLSGTSXSAPLVA 414
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 159 NGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------- 207
N S D GHG++ A TA + D Q G P A + AY+
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSD 114
Query: 208 --GEKILAAFDDAIADGVD-IITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
I A D A A G II++SLG ++ L I+ +A +KG+L V +AGN+
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSL----ISSAVNYAYSKGVLIVAAAGNS 170
Query: 265 GPKAG 269
G G
Sbjct: 171 GYSQG 175
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 23/85 (27%)
Query: 431 VASFSSRG----PNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGT 486
VA +SSRG YV +ISAPG ++ + + + YN ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 487 SMACPH-----AAAWPMNSS-KNTQ 505
SMA PH A W N S NTQ
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQ 274
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 159 NGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------- 207
N S D GHG++ A TA + D Q G P A + AY+
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSD 114
Query: 208 --GEKILAAFDDAIADGVD-IITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
I A D A A G II++SLG ++ L I+ +A +KG+L V +AGN+
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSL----ISSAVNYAYSKGVLIVAAAGNS 170
Query: 265 GPKAG 269
G G
Sbjct: 171 GYSQG 175
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 23/85 (27%)
Query: 431 VASFSSRG----PNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGT 486
VA +SSRG YV +ISAPG ++ + + + YN ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 487 SMACPH-----AAAWPMNSS-KNTQ 505
MA PH A W N S NTQ
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQ 274
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 246
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 247 ---SYETLMGTAMATPH 260
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 275 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 312
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 313 ---SYETLMGTAMATPH 326
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 179 NKVKDASFLGIGQGMARGGVPSARISAYRGEKILAA--FDDAIADGVDIITISLGD---- 232
NK++ F I + + + GV RI +GEK L A AD I L
Sbjct: 246 NKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILF 305
Query: 233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVD 292
LA ++I G TKG+ + + GP AG+ P+ ++ +L V+
Sbjct: 306 RPVNKLATNLIKSG---VATKGLNVHGKSSDWGPVAGYI----PFDQDLSKKHGQQLAVE 358
Query: 293 KVVLGNGKTIV 303
K L N K+I
Sbjct: 359 KGNLENKKSIT 369
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 316 ---SYETLMGTAMATPH 329
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 246
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 247 ---SYETLMGTAMATPH 260
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 200 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 237
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 238 ---SYETLMGTAMATPH 251
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 17/68 (25%)
Query: 431 VASFSSRGPNKYVPD--ILKPD--ISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGT 486
VA FSSRG + D I K D ISAPG + + + Y ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 487 SMACPHAA 494
SMA PHAA
Sbjct: 249 SMASPHAA 256
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 42/131 (32%)
Query: 161 SAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR------------- 207
S D +GHG++ A +A N G G G+ G P A + AY+
Sbjct: 64 SCTDRQGHGTHVAGSALANG-------GTGSGV-YGVAPEADLWAYKVLGDDGSGYADDI 115
Query: 208 GEKILAAFDDAIADGVDIITISLGD---------TSAVDLAHDVIAIGAFHAMTKGILTV 258
E I A D A A ++ I++ T+AVD A+D KG+L +
Sbjct: 116 AEAIRHAGDQATALNTKVV-INMSLGSSGESSLITNAVDYAYD-----------KGVLII 163
Query: 259 NSAGNNGPKAG 269
+AGN+GPK G
Sbjct: 164 AAAGNSGPKPG 174
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT+MA PH
Sbjct: 236 ---SYETLMGTAMATPH 249
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 179 NKVKDASFLGIGQGMARGGVPSARISAYRGEKILAA--FDDAIADGVDIITISLGD---- 232
NK++ F I + + + GV RI +GEK L A AD I L
Sbjct: 216 NKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILF 275
Query: 233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVD 292
LA ++I G TKG+ + + GP AG+ P+ ++ +L V+
Sbjct: 276 RPVNKLATNLIKSG---VATKGLNVHGKSSDWGPVAGYI----PFDQDLSKKHGQQLAVE 328
Query: 293 KVVLGNGKTI 302
K L N K+I
Sbjct: 329 KGNLENKKSI 338
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT MA PH
Sbjct: 236 ---SYETLMGTXMATPH 249
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 476 RHVKYNIISGTSMACPH 492
Y + GT MA PH
Sbjct: 236 ---SYETLMGTCMATPH 249
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 135 DGGKNFT---CNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQ 191
D G ++T + K+I + Y F D+ + +D HG++ A AA + +A+ +
Sbjct: 39 DTGVDYTHPDLDGKVI--KGYDFVDN-DYDPMDLNNHGTHVAGIAAA-ETNNATGIA--- 91
Query: 192 GMARGGVPSARISAYR-----GEKILAAFDDAI---AD-GVDIITISLGDTSAVDLAHDV 242
GMA P+ RI A R G L+ DAI AD G ++I +SLG D
Sbjct: 92 GMA----PNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLG----CDCHTTT 143
Query: 243 IAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAA-STTDRL 289
+ +A KG + V +AGNNG F + +++V A DRL
Sbjct: 144 LENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRL 191
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATGLGNTNLYGSGLVNAEAAT 268
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 490 CPH 492
PH
Sbjct: 279 TPH 281
>pdb|3B40|A Chain A, Crystal Structure Of The Probable Dipeptidase Pvdm From
Pseudomonas Aeruginosa
Length = 417
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 24 LEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSV--FPS--RTLQLHT 79
LE+V S A + S R+ L+DHE+Q + GV+ V FP+ R L T
Sbjct: 219 LEQVAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKDSGGVIQVVGFPAYLRPLSKPT 278
Query: 80 TRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSE 116
D + + ++ L+ G IWP+
Sbjct: 279 LDKLDALRARFDLPPLEGLDYALMPGDPIITIWPEQR 315
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 490 CPH 492
PH
Sbjct: 279 TPH 281
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 490 CPH 492
PH
Sbjct: 279 TPH 281
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL-------------PGNKYGAYSGTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL-------------PGNKYGAYSGTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASP 216
Query: 492 HAA 494
H A
Sbjct: 217 HVA 219
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 378 LPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSR 437
L P +V P+K ++ I + +++I N S + LNPQ I + S +R
Sbjct: 688 LGLPLKSV-PEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMAR 746
Query: 438 GPNK-----YVPDILKP 449
GPNK Y+ D + P
Sbjct: 747 GPNKVLLVPYLVDYVLP 763
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASP 216
Query: 492 HAA 494
H A
Sbjct: 217 HVA 219
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 534 YINMLCSM---GYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFP 590
Y+ +L S G V + R + G + G +PK + + V S E + FP
Sbjct: 92 YVGVLDSERFSGIKVYQGRGVGG--GSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFP 149
Query: 591 RTVTNIGLPN---------STYK-----ARILQNSKISVNVVPEVLSFRSLNEKKSFIVT 636
R T +G+ N YK + Q S + VP V F + ++ + VT
Sbjct: 150 RANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVT 209
Query: 637 VTGKG 641
+G G
Sbjct: 210 KSGLG 214
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GT MA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 32/86 (37%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GTSMA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHIN 516
N KNT YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVN 263
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GT MA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I++ KY SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL-------------PGNKYGAKSGTAMASP 216
Query: 492 HAA 494
H A
Sbjct: 217 HVA 219
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I++ KY SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL-------------PGNKYGAKSGTAMASP 216
Query: 492 HAA 494
H A
Sbjct: 217 HVA 219
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 492 HAA 494
H A
Sbjct: 226 HVA 228
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 32/91 (35%)
Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-----------AWP- 497
DI APGVN+ + Y P S Y ++GT MA PH A +W
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 498 ---MNSSKNTQAEFA----YGSGHINPVKAT 521
N KNT YGSG +N AT
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
A FSS GP + D+ APGV+I + KY +SGTSMA P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTSMASP 216
Query: 492 HAA 494
H A
Sbjct: 217 HVA 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,357,117
Number of Sequences: 62578
Number of extensions: 888512
Number of successful extensions: 2292
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 2180
Number of HSP's gapped (non-prelim): 136
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)