Query 038474
Match_columns 667
No_of_seqs 415 out of 3102
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 5.4E-43 1.2E-47 370.8 23.7 207 75-283 1-233 (307)
2 cd07478 Peptidases_S8_CspA-lik 100.0 4.2E-41 9.1E-46 371.9 24.8 348 97-494 1-407 (455)
3 cd07475 Peptidases_S8_C5a_Pept 100.0 4.1E-41 8.9E-46 362.4 22.6 173 91-268 1-190 (346)
4 cd07497 Peptidases_S8_14 Pepti 100.0 6.4E-41 1.4E-45 353.3 20.3 253 99-494 1-279 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 2.6E-40 5.6E-45 343.5 16.8 151 96-287 1-157 (275)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 7.9E-40 1.7E-44 337.1 17.9 150 93-285 1-161 (255)
7 PTZ00262 subtilisin-like prote 100.0 3.9E-40 8.4E-45 365.2 16.4 163 86-267 301-476 (639)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.2E-38 2.6E-43 338.4 21.1 167 87-283 1-186 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.2E-37 2.6E-42 322.6 19.9 158 92-285 2-169 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.3E-36 2.8E-41 320.2 23.0 159 99-285 1-182 (295)
11 cd04857 Peptidases_S8_Tripepti 100.0 1.8E-36 3.9E-41 326.1 23.5 114 163-285 182-310 (412)
12 cd07493 Peptidases_S8_9 Peptid 100.0 2.6E-36 5.7E-41 312.4 20.3 156 101-285 1-181 (261)
13 cd07483 Peptidases_S8_Subtilis 100.0 4.8E-36 1E-40 315.0 18.6 158 100-267 1-184 (291)
14 KOG1153 Subtilisin-related pro 100.0 1.5E-36 3.1E-41 315.1 14.2 237 1-285 82-376 (501)
15 cd07481 Peptidases_S8_Bacillop 100.0 1.2E-35 2.6E-40 308.0 19.4 213 99-495 1-236 (264)
16 cd07487 Peptidases_S8_1 Peptid 100.0 3.2E-35 6.9E-40 304.3 20.7 222 99-494 1-237 (264)
17 cd07491 Peptidases_S8_7 Peptid 100.0 1.2E-35 2.6E-40 304.0 17.0 145 99-285 2-170 (247)
18 cd07485 Peptidases_S8_Fervidol 100.0 3.3E-35 7.1E-40 306.2 20.1 176 91-285 1-193 (273)
19 cd05561 Peptidases_S8_4 Peptid 100.0 1.3E-35 2.8E-40 302.9 15.9 139 102-285 1-152 (239)
20 cd04842 Peptidases_S8_Kp43_pro 100.0 9.2E-35 2E-39 305.7 21.7 242 95-494 2-258 (293)
21 cd07484 Peptidases_S8_Thermita 100.0 1.1E-33 2.4E-38 292.5 20.2 163 83-285 13-184 (260)
22 cd04847 Peptidases_S8_Subtilis 100.0 2.6E-34 5.7E-39 302.2 14.8 150 103-287 2-181 (291)
23 cd07494 Peptidases_S8_10 Pepti 100.0 1.1E-33 2.4E-38 297.4 19.5 155 84-286 6-174 (298)
24 cd07480 Peptidases_S8_12 Pepti 100.0 1.2E-33 2.7E-38 297.9 19.8 138 94-268 2-172 (297)
25 cd04843 Peptidases_S8_11 Pepti 100.0 2E-33 4.3E-38 292.3 19.2 141 86-267 2-155 (277)
26 cd07490 Peptidases_S8_6 Peptid 100.0 2.6E-33 5.7E-38 288.6 18.8 150 101-286 1-160 (254)
27 cd07496 Peptidases_S8_13 Pepti 100.0 7.6E-33 1.7E-37 290.2 18.6 162 101-285 1-198 (285)
28 cd04077 Peptidases_S8_PCSK9_Pr 100.0 9.2E-33 2E-37 284.9 18.6 147 92-285 17-178 (255)
29 cd07498 Peptidases_S8_15 Pepti 100.0 8.4E-33 1.8E-37 282.8 18.1 151 102-285 1-161 (242)
30 cd07477 Peptidases_S8_Subtilis 100.0 5.1E-32 1.1E-36 274.5 18.5 146 101-285 1-157 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 1.2E-32 2.7E-37 287.5 14.0 158 103-285 1-172 (282)
32 cd07473 Peptidases_S8_Subtilis 100.0 1.1E-31 2.3E-36 277.4 19.9 164 100-285 2-184 (259)
33 KOG4266 Subtilisin kexin isozy 100.0 4.5E-31 9.8E-36 280.7 21.8 268 56-522 113-465 (1033)
34 cd07482 Peptidases_S8_Lantibio 100.0 5.4E-31 1.2E-35 277.1 17.8 139 101-268 1-159 (294)
35 cd04059 Peptidases_S8_Protein_ 100.0 6.5E-31 1.4E-35 277.1 15.7 168 85-285 25-213 (297)
36 cd07492 Peptidases_S8_8 Peptid 100.0 1.1E-29 2.4E-34 256.5 17.5 142 101-285 1-151 (222)
37 cd04848 Peptidases_S8_Autotran 100.0 6.7E-29 1.4E-33 256.8 17.2 155 98-285 1-186 (267)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3.6E-28 7.8E-33 248.3 13.1 110 161-285 32-159 (247)
39 KOG1114 Tripeptidyl peptidase 99.9 1.3E-27 2.9E-32 264.6 14.5 112 165-284 309-434 (1304)
40 cd00306 Peptidases_S8_S53 Pept 99.9 6.4E-24 1.4E-28 214.6 18.2 152 102-285 1-166 (241)
41 COG1404 AprE Subtilisin-like s 99.8 5.3E-19 1.2E-23 197.8 17.7 144 91-268 131-290 (508)
42 cd04056 Peptidases_S53 Peptida 99.6 1.7E-14 3.6E-19 156.2 15.3 97 192-288 81-198 (361)
43 KOG3526 Subtilisin-like propro 99.4 1.9E-12 4E-17 132.6 11.1 163 91-283 152-335 (629)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 2.3E-10 4.9E-15 107.6 10.7 107 314-441 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 5.1E-10 1.1E-14 102.7 11.4 111 294-417 2-126 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 1.7E-09 3.6E-14 91.3 5.1 78 1-78 1-82 (82)
47 PF02225 PA: PA domain; Inter 98.4 2.9E-07 6.2E-12 80.8 4.6 79 317-395 7-99 (101)
48 cd04818 PA_subtilisin_1 PA_sub 98.3 3.2E-06 7E-11 76.7 8.8 71 330-408 28-111 (118)
49 cd04816 PA_SaNapH_like PA_SaNa 98.3 3.7E-06 8.1E-11 76.8 9.3 78 317-395 18-110 (122)
50 cd02130 PA_ScAPY_like PA_ScAPY 98.2 1.2E-05 2.7E-10 73.3 10.9 75 317-395 23-110 (122)
51 PF06280 DUF1034: Fn3-like dom 98.2 2.2E-05 4.9E-10 70.5 12.3 80 586-666 9-112 (112)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.1 9.9E-06 2.1E-10 73.2 8.3 77 316-395 20-110 (120)
53 cd02127 PA_hPAP21_like PA_hPAP 98.1 2.3E-05 4.9E-10 71.1 9.8 66 330-395 22-104 (118)
54 cd02122 PA_GRAIL_like PA _GRAI 98.0 2.5E-05 5.5E-10 72.7 8.8 72 324-395 39-126 (138)
55 cd00538 PA PA: Protease-associ 98.0 1.6E-05 3.4E-10 72.5 7.1 70 331-408 32-119 (126)
56 cd02132 PA_GO-like PA_GO-like: 98.0 3.5E-05 7.5E-10 72.0 9.0 75 317-395 39-127 (139)
57 cd02126 PA_EDEM3_like PA_EDEM3 97.9 2.1E-05 4.6E-10 72.2 7.0 66 330-395 28-114 (126)
58 cd04813 PA_1 PA_1: Protease-as 97.9 3.4E-05 7.3E-10 69.8 7.2 66 330-395 28-107 (117)
59 cd02125 PA_VSR PA_VSR: Proteas 97.8 9.7E-05 2.1E-09 67.8 9.5 66 330-395 23-115 (127)
60 cd02124 PA_PoS1_like PA_PoS1_l 97.8 0.00011 2.4E-09 67.6 9.0 77 318-395 28-117 (129)
61 cd04817 PA_VapT_like PA_VapT_l 97.7 7.2E-05 1.6E-09 69.5 7.0 58 338-395 53-129 (139)
62 COG4934 Predicted protease [Po 97.6 0.0003 6.5E-09 83.9 11.6 158 91-283 219-395 (1174)
63 cd04819 PA_2 PA_2: Protease-as 97.6 0.00042 9.2E-09 63.7 10.0 78 315-396 22-116 (127)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.4 0.00029 6.3E-09 66.9 6.7 66 330-395 51-135 (153)
65 KOG3525 Subtilisin-like propro 96.6 0.0042 9.2E-08 68.7 7.5 153 87-270 21-190 (431)
66 cd04822 PA_M28_1_3 PA_M28_1_3: 96.4 0.015 3.2E-07 54.9 8.5 80 316-395 20-130 (151)
67 PF14874 PapD-like: Flagellar- 96.4 0.059 1.3E-06 47.2 11.6 90 568-666 9-98 (102)
68 cd04815 PA_M28_2 PA_M28_2: Pro 96.3 0.011 2.4E-07 54.8 6.9 59 338-396 36-123 (134)
69 cd02128 PA_TfR PA_TfR: Proteas 96.3 0.0067 1.5E-07 58.9 5.5 58 338-395 52-151 (183)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 95.9 0.016 3.5E-07 53.7 6.1 57 316-372 22-97 (137)
71 cd04814 PA_M28_1 PA_M28_1: Pro 95.9 0.021 4.5E-07 53.4 6.5 58 315-372 19-101 (142)
72 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.14 3.1E-06 42.6 7.0 57 585-641 5-62 (78)
73 cd02131 PA_hNAALADL2_like PA_h 93.6 0.072 1.6E-06 49.9 3.7 34 338-371 37-75 (153)
74 cd02121 PA_GCPII_like PA_GCPII 92.4 0.15 3.2E-06 51.4 4.2 51 316-372 45-107 (220)
75 KOG2442 Uncharacterized conser 91.8 0.45 9.8E-06 52.1 7.3 58 338-395 92-163 (541)
76 PF11614 FixG_C: IG-like fold 91.6 1.7 3.6E-05 39.1 9.8 54 588-642 34-87 (118)
77 cd04821 PA_M28_1_2 PA_M28_1_2: 87.4 1.3 2.8E-05 42.2 5.9 34 338-371 46-103 (157)
78 COG1470 Predicted membrane pro 83.1 5.7 0.00012 43.8 8.9 68 586-653 398-466 (513)
79 KOG1114 Tripeptidyl peptidase 83.0 0.8 1.7E-05 53.9 2.6 82 428-522 451-557 (1304)
80 PF06030 DUF916: Bacterial pro 82.7 31 0.00068 31.3 12.4 68 586-655 28-119 (121)
81 PF00345 PapD_N: Pili and flag 81.1 16 0.00036 32.8 10.1 67 587-655 16-89 (122)
82 KOG3920 Uncharacterized conser 75.6 3.4 7.3E-05 38.7 3.7 76 317-395 65-159 (193)
83 KOG4628 Predicted E3 ubiquitin 72.7 6.6 0.00014 42.1 5.6 58 338-395 76-145 (348)
84 TIGR02745 ccoG_rdxA_fixG cytoc 69.1 18 0.00039 40.4 8.2 55 586-641 347-401 (434)
85 PF00635 Motile_Sperm: MSP (Ma 67.3 50 0.0011 28.6 9.4 52 586-640 19-70 (109)
86 smart00635 BID_2 Bacterial Ig- 65.9 20 0.00043 29.8 6.1 40 614-658 4-43 (81)
87 PF07718 Coatamer_beta_C: Coat 62.9 31 0.00067 32.2 7.2 67 587-655 71-138 (140)
88 COG1470 Predicted membrane pro 60.8 96 0.0021 34.6 11.5 55 586-641 285-345 (513)
89 PF07705 CARDB: CARDB; InterP 49.0 1.5E+02 0.0033 24.7 9.1 51 586-640 20-72 (101)
90 PF07610 DUF1573: Protein of u 47.4 70 0.0015 23.4 5.6 42 592-637 3-45 (45)
91 PF08260 Kinin: Insect kinin p 40.7 13 0.00028 17.2 0.5 6 433-438 3-8 (8)
92 PLN03080 Probable beta-xylosid 35.0 62 0.0014 39.1 5.8 77 586-664 685-778 (779)
93 PRK13203 ureB urease subunit b 33.0 63 0.0014 28.3 3.9 49 586-636 19-82 (102)
94 PF09244 DUF1964: Domain of un 31.9 77 0.0017 25.0 3.8 40 621-660 15-58 (68)
95 cd00407 Urease_beta Urease bet 31.8 92 0.002 27.3 4.7 49 586-636 19-82 (101)
96 PRK13202 ureB urease subunit b 31.7 86 0.0019 27.6 4.5 48 587-636 21-83 (104)
97 PF05753 TRAP_beta: Translocon 31.3 2.9E+02 0.0063 26.9 8.8 63 585-651 38-107 (181)
98 cd08523 Reeler_cohesin_like Do 30.8 4.2E+02 0.0091 24.2 10.3 20 622-641 75-94 (124)
99 PF14016 DUF4232: Protein of u 29.4 4.3E+02 0.0093 23.9 10.2 55 586-641 19-84 (131)
100 TIGR00192 urease_beta urease, 28.9 87 0.0019 27.4 4.0 49 586-636 19-82 (101)
101 PRK15098 beta-D-glucoside gluc 27.2 1.4E+02 0.0031 35.9 7.1 53 586-641 668-729 (765)
102 PRK15308 putative fimbrial pro 26.1 1.9E+02 0.0042 29.4 6.7 50 589-639 35-100 (234)
103 PRK13205 ureB urease subunit b 25.5 1.1E+02 0.0023 28.8 4.2 49 586-636 19-82 (162)
104 PRK13201 ureB urease subunit b 24.9 1.2E+02 0.0027 27.8 4.4 49 586-636 19-82 (136)
105 PF00927 Transglut_C: Transglu 24.0 4.7E+02 0.01 22.6 9.8 54 586-641 16-78 (107)
106 PF02368 Big_2: Bacterial Ig-l 22.9 69 0.0015 26.2 2.4 37 614-656 4-40 (79)
107 PF12690 BsuPI: Intracellular 22.4 4.7E+02 0.01 21.9 7.9 22 619-641 51-72 (82)
108 PRK13204 ureB urease subunit b 21.4 1.4E+02 0.003 28.2 4.2 49 586-636 42-105 (159)
109 PF00699 Urease_beta: Urease b 21.2 1.7E+02 0.0036 25.7 4.3 49 586-636 18-81 (100)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-43 Score=370.81 Aligned_cols=207 Identities=51% Similarity=0.830 Sum_probs=180.5
Q ss_pred cccCCCCCccccCCChhhhcc-----CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCc---cCCcee
Q 038474 75 LQLHTTRSWDFMGFNESITQR-----RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNF---TCNNKI 146 (667)
Q Consensus 75 ~~~~~~~s~~~ig~~~~~w~~-----~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f---~~n~ki 146 (667)
++|+++++++|++++ .+|+. +++|+||+|||||||||++||+|.+....+.+..|.+.|..+..+ .|++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 478999999999999 66664 899999999999999999999999988888899999999988777 499999
Q ss_pred EeeeeccCC---------CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------c
Q 038474 147 IGARYYSFR---------DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------G 208 (667)
Q Consensus 147 ig~~~~~~~---------~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~ 208 (667)
++.++|..+ ..+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+| .
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999642 2235667889999999999999998766666666667789999999999999 4
Q ss_pred hhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcc
Q 038474 209 EKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAA 283 (667)
Q Consensus 209 ~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA 283 (667)
+++++|+++|+++|++|||||||.... ....+.+..+++.+.++|++||+||||+|+...+.++.+||+++|||
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 579999999999999999999998732 44567888888899999999999999999887788888999999976
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.2e-41 Score=371.93 Aligned_cols=348 Identities=23% Similarity=0.248 Sum_probs=215.0
Q ss_pred CCCCCcEEEEEcCCCCCCCcCCCC-CCCCCCCCCccccccCCCCccCCceeEeeeecc----------CCCCCCCCCCCC
Q 038474 97 TVESDLIVGVIDTGIWPQSESFSD-EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYS----------FRDDGNGSAIDE 165 (667)
Q Consensus 97 ~~G~gv~VgViDtGid~~Hp~f~d-~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~----------~~~~~~~~~~D~ 165 (667)
++|+||+|||||||||+.||+|.+ .+.+++...|++....+... ....+...+. .++.+.....|+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999985 45677788898876654221 1111221111 112233456789
Q ss_pred CCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----c--------------hhHHHHHHHHHHC-----
Q 038474 166 EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----G--------------EKILAAFDDAIAD----- 221 (667)
Q Consensus 166 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~--------------~~i~~a~~~a~~~----- 221 (667)
.||||||||||||+..++. .+.||||+|+|+++| . .+++.|++|+++.
T Consensus 78 ~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999864322 238999999999999 1 3799999999874
Q ss_pred CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcC-CeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeEEeCCCe
Q 038474 222 GVDIITISLGDTSAVDLAHDVIAIGAFHAMTK-GILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGK 300 (667)
Q Consensus 222 g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~ 300 (667)
.+.|||||||...+++...++++.++..+.++ |++||+||||+|....++.... ... ...-...+.++.++
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~~~----~~~~~ie~~v~~~~ 221 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----VPN----GETKTVELNVGEGE 221 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----ccC----CceEEEEEEECCCC
Confidence 47899999999866777788999999888776 9999999999997544433210 000 00000112222222
Q ss_pred EEEEEEeeeccCCCCceeeEEEccCCCCCC------CCCccccccccccEEEEee-----------chhhHHHHhcCceE
Q 038474 301 TIVVRYSINAFTHKGKMFPLLYGKGVTNSS------SCTEDYANLVKGNIVLCDE-----------FSGYHVAREAGAAG 363 (667)
Q Consensus 301 ~~~g~~s~~~~~~~~~~~~lv~~~~~~~~~------~C~~~~~~~~~gkIvl~~~-----------~~~~~~~~~~Ga~g 363 (667)
.... ..++......-.+.|+.+....... ......+.....+|.+..+ .-+. .-...|.+-
T Consensus 222 ~~~~-~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~-~~~~~GiW~ 299 (455)
T cd07478 222 KGFN-LEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRF-KNIKPGIWK 299 (455)
T ss_pred cceE-EEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEc-cCCCccceE
Confidence 1111 1122111111112222222111000 0000000111112222211 0011 224457788
Q ss_pred EEEecCCCCCcccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEee-----eeeec-CCCCCcccccCCC
Q 038474 364 LILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILK-----TSVIK-DSDAPIVASFSSR 437 (667)
Q Consensus 364 ~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----~t~~~-~~~~~~~a~FSSr 437 (667)
+.+.........+..+||.-.+..++.. |+.+. ...+.+++. .++-. +.....++.||||
T Consensus 300 i~~~~~~~~~g~~~~Wlp~~~~~~~~t~------------f~~~~--~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~ 365 (455)
T cd07478 300 IRLTGVSITDGRFDAWLPSRGLLSENTR------------FLEPD--PYTTLTIPGTARSVITVGAYNQNNNSIAIFSGR 365 (455)
T ss_pred EEEEeccCCCceEEEEecCcCcCCCCCE------------eecCC--CCceEecCCCCCCcEEEEEEeCCCCcccCccCC
Confidence 8888776666666677776655544333 45444 444444421 11222 2234569999999
Q ss_pred CCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhh
Q 038474 438 GPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494 (667)
Q Consensus 438 GPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVA 494 (667)
||+. ++++||||+|||++|+++++.+ .|..+|||||||||||
T Consensus 366 G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~va 407 (455)
T cd07478 366 GPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVA 407 (455)
T ss_pred CcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHH
Confidence 9998 8999999999999999998864 6999999999999999
No 3
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=4.1e-41 Score=362.38 Aligned_cols=173 Identities=25% Similarity=0.308 Sum_probs=132.2
Q ss_pred hhhccCC-CCCCcEEEEEcCCCCCCCcCCCCCCCCCCCC-----CccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474 91 SITQRRT-VESDLIVGVIDTGIWPQSESFSDEGFGPAPK-----KWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID 164 (667)
Q Consensus 91 ~~w~~~~-~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~-----~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D 164 (667)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+...+++.+++..++|..+........|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3799887 9999999999999999999998654332111 223333344444678899999988754333333557
Q ss_pred CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474 165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDT 233 (667)
Q Consensus 165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~ 233 (667)
..+|||||||||+|...+..+ ...+.||||+|+|+.+| ...++++++++++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 899999999999998643211 12349999999999998 34589999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 038474 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA 268 (667)
Q Consensus 234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 268 (667)
.........+..++.++.++|++||+||||+|...
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~ 190 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSG 190 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccC
Confidence 43334556778888899999999999999998654
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-41 Score=353.34 Aligned_cols=253 Identities=26% Similarity=0.247 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474 99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG 178 (667)
Q Consensus 99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag 178 (667)
|+||+|||||||||.+||||.+.... .|+. .|.+...+....++.++ ....+.|++||||||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~--~~~~~~D~~gHGThvAGiiag 68 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGG--FYVIMYDFFSHGTSCASVAAG 68 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCC--ccCCCCCccccchhHHHHHhc
Confidence 89999999999999999999743110 1110 01111122222222211 113467899999999999999
Q ss_pred ccCCCCccccc-cccceeecccCcEEEEEe---c------hhHHH-------HHHHH--HHCCCcEEEeCcCCCCCCC--
Q 038474 179 NKVKDASFLGI-GQGMARGGVPSARISAYR---G------EKILA-------AFDDA--IADGVDIITISLGDTSAVD-- 237 (667)
Q Consensus 179 ~~~~~~~~~G~-~~g~~~GvAP~A~l~~~k---~------~~i~~-------a~~~a--~~~g~dVin~SlG~~~~~~-- 237 (667)
......+.+++ ....+.||||+|+|+.+| . ..+++ +++|. .+++++|||||||......
T Consensus 69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 86432222211 112358999999999999 1 11233 23333 3679999999999852111
Q ss_pred --ChhhHHHHHHHHh-hcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccC
Q 038474 238 --LAHDVIAIGAFHA-MTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFT 312 (667)
Q Consensus 238 --~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~ 312 (667)
...+..+..+..+ .++|++||+||||+|+... +.|..++++|+|||++..... ..+.
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~----------------~~~~-- 210 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR----------------PFYL-- 210 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc----------------chhh--
Confidence 0112233333332 3899999999999998644 456678999999998632100 0000
Q ss_pred CCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHH
Q 038474 313 HKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNS 392 (667)
Q Consensus 313 ~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~ 392 (667)
T Consensus 211 -------------------------------------------------------------------------------- 210 (311)
T cd07497 211 -------------------------------------------------------------------------------- 210 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCc
Q 038474 393 IIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDI 472 (667)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~ 472 (667)
+... ....+.++.||||||+. ++++||||+|||++|+++.+......
T Consensus 211 -----------~~~~-----------------~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~--- 257 (311)
T cd07497 211 -----------FGYL-----------------PGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG--- 257 (311)
T ss_pred -----------hccc-----------------cCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---
Confidence 0000 01135689999999998 89999999999999999976542100
Q ss_pred CCccceeeEEEcccCCchhhhh
Q 038474 473 EDERHVKYNIISGTSMACPHAA 494 (667)
Q Consensus 473 ~~~~~~~y~~~SGTSMAaPhVA 494 (667)
.......|..+|||||||||||
T Consensus 258 ~~~~~~~y~~~sGTSmAaP~Va 279 (311)
T cd07497 258 ALDGNEAFDLFGGTSMATPMTA 279 (311)
T ss_pred ccCCCcceeeecchhhhhHHHH
Confidence 0112347999999999999999
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.6e-40 Score=343.55 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=116.0
Q ss_pred CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhh
Q 038474 96 RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAST 175 (667)
Q Consensus 96 ~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgi 175 (667)
+++|+||+|||||||||.+||+|.+-..+..+..+ .+..+ .....|..+||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~--------------------~~~~~---~~~~~d~~gHGT~vAgi 57 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV--------------------NVLGD---LDGGSGGGDEGRAMLEI 57 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce--------------------eeccc---cCCCCCCCchHHHHHHH
Confidence 57899999999999999999865432111111111 11100 12356788999999999
Q ss_pred hccccCCCCccccccccceeecccCcEEEEEe----chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474 176 AAGNKVKDASFLGIGQGMARGGVPSARISAYR----GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 176 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~ 251 (667)
|+ ||||+|+|+.++ .+++++||+|+++.|++|||||||......+....+..++.++.
T Consensus 58 i~------------------GvAP~a~l~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~ 119 (275)
T cd05562 58 IH------------------DIAPGAELAFHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVV 119 (275)
T ss_pred Hh------------------ccCCCCEEEEEecCCCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHH
Confidence 84 889999999999 66799999999999999999999986333234456788888888
Q ss_pred cC-CeEEEEecCCCCCCCC-CcCCCCCceEEEccccCC
Q 038474 252 TK-GILTVNSAGNNGPKAG-FTSSIAPWLMSVAASTTD 287 (667)
Q Consensus 252 ~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~d 287 (667)
++ |++||+||||+|.... ..++..|++|+|||++.+
T Consensus 120 ~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~ 157 (275)
T cd05562 120 ASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYG 157 (275)
T ss_pred HcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccC
Confidence 87 9999999999998543 457788999999998644
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=7.9e-40 Score=337.10 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=119.0
Q ss_pred hccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchh
Q 038474 93 TQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNT 172 (667)
Q Consensus 93 w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThV 172 (667)
|+++++|+||+|||||||||.+||+|.+. +...+|.. .....|..||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~-------------------------~~~~~~~~----~~~~~d~~gHGT~V 51 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV-------------------------KERTNWTN----EKTLDDGLGHGTFV 51 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc-------------------------ccccccCC----CCCCCCCCCcHHHH
Confidence 89999999999999999999999999731 00111211 12456788999999
Q ss_pred hhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHH
Q 038474 173 ASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVI 243 (667)
Q Consensus 173 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~ 243 (667)
||||+|+.. .+.||||+|+|+.+| .+.++++++||+++++||||||||... +...++
T Consensus 52 AGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~ 117 (255)
T cd07479 52 AGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPF 117 (255)
T ss_pred HHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHH
Confidence 999998741 138999999999999 345889999999999999999999862 234566
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCCCCC--cCCCCCceEEEcccc
Q 038474 244 AIGAFHAMTKGILTVNSAGNNGPKAGF--TSSIAPWLMSVAAST 285 (667)
Q Consensus 244 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~ 285 (667)
..++.++.++|++||+||||+|+...+ .+...+++|+|||.+
T Consensus 118 ~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~ 161 (255)
T cd07479 118 VDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID 161 (255)
T ss_pred HHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec
Confidence 667788889999999999999975443 456678899998754
No 7
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.9e-40 Score=365.15 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=116.7
Q ss_pred cCCChhhhc--cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCcee--EeeeeccCCCCCCCC
Q 038474 86 MGFNESITQ--RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKI--IGARYYSFRDDGNGS 161 (667)
Q Consensus 86 ig~~~~~w~--~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~ki--ig~~~~~~~~~~~~~ 161 (667)
++++ ++|+ .+.+|+||+|||||||||++||||.+.- ...+....|. .+.+-..|+.+ +.+++|..+ ..+
T Consensus 301 i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-~~n~~el~Gr--dgiDdD~nG~vdd~~G~nfVd~---~~~ 373 (639)
T PTZ00262 301 TRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-DVNVKELHGR--KGIDDDNNGNVDDEYGANFVNN---DGG 373 (639)
T ss_pred hCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-ccccccccCc--cccccccCCcccccccccccCC---CCC
Confidence 4566 6776 3568999999999999999999998531 1000101110 00000001111 223444322 345
Q ss_pred CCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCC
Q 038474 162 AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGD 232 (667)
Q Consensus 162 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~ 232 (667)
|.|..||||||||||||...++. | +.||||+|+|+.+| .+++++||+||++.|++|||||||+
T Consensus 374 P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~ 445 (639)
T PTZ00262 374 PMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSF 445 (639)
T ss_pred CCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecccc
Confidence 78999999999999999753321 2 38999999999999 5679999999999999999999997
Q ss_pred CCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474 233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK 267 (667)
Q Consensus 233 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 267 (667)
. .....+..++.+|.++|++||+||||+|+.
T Consensus 446 ~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~ 476 (639)
T PTZ00262 446 D----EYSGIFNESVKYLEEKGILFVVSASNCSHT 476 (639)
T ss_pred C----CccHHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 6 123567788899999999999999999864
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-38 Score=338.42 Aligned_cols=167 Identities=29% Similarity=0.440 Sum_probs=127.9
Q ss_pred CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-------CCCC
Q 038474 87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-------DDGN 159 (667)
Q Consensus 87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-------~~~~ 159 (667)
+++ .+|+.+++|+||+|||||+|||++||+|.+. +.+ +.++.+.++|.++ ..+.
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGP-----------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCC-----------------CceeccccccCCcccccccCCCCC
Confidence 355 8999999999999999999999999999853 111 1122333333221 2234
Q ss_pred CCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCc
Q 038474 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISL 230 (667)
Q Consensus 160 ~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~Sl 230 (667)
..+.|..||||||||||+|...+ .| +.||||+|+|+.+| ...+++++++|++++++||||||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~ 132 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL 132 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 56678899999999999998642 23 38999999999999 44589999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC---CcCCCCCceEEEcc
Q 038474 231 GDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG---FTSSIAPWLMSVAA 283 (667)
Q Consensus 231 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA 283 (667)
|.. ..+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+
T Consensus 133 g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga 186 (312)
T cd07489 133 GGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVAS 186 (312)
T ss_pred CcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEE
Confidence 987 3344577788888899999999999999986532 33455677777765
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.2e-37 Score=322.63 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=126.7
Q ss_pred hhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcch
Q 038474 92 ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSN 171 (667)
Q Consensus 92 ~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGTh 171 (667)
+|..+++|+||+|||||+|||.+||+|.+..+.+.. .+.. ......|..+||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~-----------------------~~~~---~~~~~~~~~gHGT~ 55 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF-----------------------TYAA---AACQDGGASAHGTH 55 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc-----------------------Cccc---cCCCCCCCCCcHHH
Confidence 799999999999999999999999999853221110 0000 11234567899999
Q ss_pred hhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhh
Q 038474 172 TASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHD 241 (667)
Q Consensus 172 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~ 241 (667)
|||+|+|.... .+.||||+|+|+.++ ..++++||+||++.|+||||||||..........
T Consensus 56 VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~ 125 (267)
T cd07476 56 VASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADP 125 (267)
T ss_pred HHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCH
Confidence 99999987421 238999999999988 2468999999999999999999997633334456
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474 242 VIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 242 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 285 (667)
.+..++.+|.++|++||+||||+|.....+|+..|++|+|||++
T Consensus 126 ~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~ 169 (267)
T cd07476 126 ILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD 169 (267)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec
Confidence 78888899999999999999999987777888899999999854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-36 Score=320.17 Aligned_cols=159 Identities=36% Similarity=0.509 Sum_probs=123.3
Q ss_pred CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCC------------CCCCCCCC
Q 038474 99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDG------------NGSAIDEE 166 (667)
Q Consensus 99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~------------~~~~~D~~ 166 (667)
|+||+|||||+||+++||+|.+.. ..++++...++|..+... .....|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC------------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 899999999999999999998532 123445555555432111 11244688
Q ss_pred CCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC
Q 038474 167 GHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVD 237 (667)
Q Consensus 167 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~ 237 (667)
+|||||||+|+|...+. ..+.|+||+|+|+.+| ..+++++|+|+++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 99999999999986431 2238999999999998 556899999999999999999999872 2
Q ss_pred ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCc--CCCCCceEEEcccc
Q 038474 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFT--SSIAPWLMSVAAST 285 (667)
Q Consensus 238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~ 285 (667)
...+.+..++.++.++|+++|+||||+|...... +...+++|+|||+.
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~ 182 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeee
Confidence 2456778888899999999999999998765544 56779999999864
No 11
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.8e-36 Score=326.14 Aligned_cols=114 Identities=26% Similarity=0.361 Sum_probs=87.4
Q ss_pred CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcC
Q 038474 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLG 231 (667)
Q Consensus 163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG 231 (667)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+| ..++++|+++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985322 2248999999999999 135889999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHH-hhcCCeEEEEecCCCCCCCCCcCC---CCCceEEEcccc
Q 038474 232 DTSAVDLAHDVIAIGAFH-AMTKGILTVNSAGNNGPKAGFTSS---IAPWLMSVAAST 285 (667)
Q Consensus 232 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~ 285 (667)
........ ..+..++.+ +.++|+++|+||||+|+..+++.. .++++|+|||+.
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~ 310 (412)
T cd04857 254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYV 310 (412)
T ss_pred cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEccee
Confidence 87321111 233344444 346899999999999987766543 468999999964
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-36 Score=312.41 Aligned_cols=156 Identities=31% Similarity=0.359 Sum_probs=120.6
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~ 180 (667)
||+||||||||+++||+|..... ..+.++++.++|..+... ...|..+|||||||+|+|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~--~~~~~~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNN--TNYTDDDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCC--CCCCCCCchhhhheeeeeCC
Confidence 79999999999999999952211 124567777877643211 13678899999999999974
Q ss_pred CCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCC-----------
Q 038474 181 VKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDTSAVDL----------- 238 (667)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~----------- 238 (667)
. +...||||+|+|+.+| ..+++.+++++.+.|++|||||||.......
T Consensus 62 ~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~ 131 (261)
T cd07493 62 P----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG 131 (261)
T ss_pred C----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence 2 2348999999999998 3357899999999999999999998632111
Q ss_pred hhhHHHHHHHHhhcCCeEEEEecCCCCCC---CCCcCCCCCceEEEcccc
Q 038474 239 AHDVIAIGAFHAMTKGILTVNSAGNNGPK---AGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 239 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~ 285 (667)
....+..++..+.++|++||+||||+|.. ...+|...+++|+|||.+
T Consensus 132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~ 181 (261)
T cd07493 132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD 181 (261)
T ss_pred cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec
Confidence 12457778888999999999999999976 345677789999998853
No 13
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=4.8e-36 Score=314.96 Aligned_cols=158 Identities=25% Similarity=0.390 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCCCCcCCCCCCCCC-CCCCccccccC---------CCCcc---CCceeEeeeeccCC-----CCCCCC
Q 038474 100 SDLIVGVIDTGIWPQSESFSDEGFGP-APKKWKGACDG---------GKNFT---CNNKIIGARYYSFR-----DDGNGS 161 (667)
Q Consensus 100 ~gv~VgViDtGid~~Hp~f~d~~~~~-~~~~~~g~~~~---------g~~f~---~n~kiig~~~~~~~-----~~~~~~ 161 (667)
++|+|||||||||++||+|++.-... .....++.... |.+|. ..+++++...+... ..+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998531100 00001111111 11220 11112221111100 111234
Q ss_pred CCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474 162 AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDT 233 (667)
Q Consensus 162 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVin~SlG~~ 233 (667)
+.|..+|||||||||+|...++ .| +.||||+|+|+.+| ..++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 5568999999999999986432 12 38999999999999 46789999999999999999999976
Q ss_pred CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK 267 (667)
Q Consensus 234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 267 (667)
. ......+..++..|.++|+++|+||||+|..
T Consensus 153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~ 184 (291)
T cd07483 153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLD 184 (291)
T ss_pred C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCC
Confidence 2 2233567778888999999999999999864
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=315.12 Aligned_cols=237 Identities=16% Similarity=0.227 Sum_probs=175.0
Q ss_pred CEEEEeCCCCCCCCCchhHHHHHHHHHhcC------CCCcc------------cEEEEec---ceeeEEEEEeCHHHHHH
Q 038474 1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEG------SSAEN------------ILVRSYK---RSFNGFAAKLTDHEIQK 59 (667)
Q Consensus 1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~v~~~y~---~~~ng~s~~l~~~~~~~ 59 (667)
.|||.++.... -.....|++|+.+..+.. +++-. .+.+.|. .+|+|..-..+.+-+..
T Consensus 82 ~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~ 160 (501)
T KOG1153|consen 82 RYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCS 160 (501)
T ss_pred ceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeee
Confidence 39999995442 233455555554433321 11101 1344443 38888999999999999
Q ss_pred HHcCCCeeEEEcCccccc--------CCCCCccccCCCh------hhhcc----CCCCCCcEEEEEcCCCCCCCcCCCCC
Q 038474 60 LAGMKGVVSVFPSRTLQL--------HTTRSWDFMGFNE------SITQR----RTVESDLIVGVIDTGIWPQSESFSDE 121 (667)
Q Consensus 60 L~~~p~V~~v~~~~~~~~--------~~~~s~~~ig~~~------~~w~~----~~~G~gv~VgViDtGid~~Hp~f~d~ 121 (667)
+++.|-++.++++...+. +....|.+-.+.. .-|-. -..|+||...|+||||+.+||+|.++
T Consensus 161 i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegR 240 (501)
T KOG1153|consen 161 IRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGR 240 (501)
T ss_pred eccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccc
Confidence 999999999998877654 3344555544432 12221 24899999999999999999999864
Q ss_pred CCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCc
Q 038474 122 GFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSA 201 (667)
Q Consensus 122 ~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A 201 (667)
+.|-. |.. +.....|++||||||||+|++.. .|+|.++
T Consensus 241 ------a~wGa-~i~---------------------~~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s 278 (501)
T KOG1153|consen 241 ------AIWGA-TIP---------------------PKDGDEDCNGHGTHVAGLIGSKT--------------FGVAKNS 278 (501)
T ss_pred ------eeccc-ccC---------------------CCCcccccCCCcceeeeeeeccc--------------ccccccc
Confidence 33311 110 01235689999999999999885 7999999
Q ss_pred EEEEEe---------chhHHHHHHHHHHC---------CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCC
Q 038474 202 RISAYR---------GEKILAAFDDAIAD---------GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGN 263 (667)
Q Consensus 202 ~l~~~k---------~~~i~~a~~~a~~~---------g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 263 (667)
+|+.+| .+++++++|++++. +..|.|||+|+. ..-.+..|+.+|.+.||++++||||
T Consensus 279 ~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGN 353 (501)
T KOG1153|consen 279 NLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGN 353 (501)
T ss_pred ceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCC
Confidence 999999 78999999999886 478999999997 3457889999999999999999999
Q ss_pred CCCCCC-CcCCCCCceEEEcccc
Q 038474 264 NGPKAG-FTSSIAPWLMSVAAST 285 (667)
Q Consensus 264 ~G~~~~-~~~~~~p~vitVgA~~ 285 (667)
+..+.+ +.|+.+..+|||||++
T Consensus 354 e~eDAC~~SPass~~aITVGAst 376 (501)
T KOG1153|consen 354 EHEDACNSSPASSKKAITVGAST 376 (501)
T ss_pred cchhhhccCcccccccEEecccc
Confidence 987765 5567889999999975
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.2e-35 Score=308.04 Aligned_cols=213 Identities=32% Similarity=0.428 Sum_probs=161.0
Q ss_pred CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474 99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG 178 (667)
Q Consensus 99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag 178 (667)
|+||+||||||||+++||+|.+. |++.... .+...+.+.........+.|..+|||||||||+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~--------~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g 64 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG--------SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVG 64 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC--------CcccccccccCCCCCCCCCCCCCchhhhhhheee
Confidence 89999999999999999999864 1111000 0000011110111134567889999999999998
Q ss_pred ccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHH------------CCCcEEEeCcCCCCCCCC
Q 038474 179 NKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIA------------DGVDIITISLGDTSAVDL 238 (667)
Q Consensus 179 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~------------~g~dVin~SlG~~~~~~~ 238 (667)
.... +...||||+|+|+.+| ..+++++++++++ .|++|||||||....
T Consensus 65 ~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--- 132 (264)
T cd07481 65 NDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--- 132 (264)
T ss_pred cCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---
Confidence 7532 1127999999999999 4568999999875 789999999998722
Q ss_pred hhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC---cCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCC
Q 038474 239 AHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF---TSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKG 315 (667)
Q Consensus 239 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~ 315 (667)
....+..++..+.++|++||+||||+|..... ++...|++|+|||.+.+
T Consensus 133 ~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------------- 184 (264)
T cd07481 133 DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN---------------------------- 184 (264)
T ss_pred CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC----------------------------
Confidence 23455666777888999999999999865432 56778899999875421
Q ss_pred ceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHH
Q 038474 316 KMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 316 ~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~ 395 (667)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCc
Q 038474 396 QFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475 (667)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~ 475 (667)
..++.||++||.. .+++||||+|||.+|+++++..
T Consensus 185 ---------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~---------- 219 (264)
T cd07481 185 ---------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG---------- 219 (264)
T ss_pred ---------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC----------
Confidence 3456899999998 7999999999999999998763
Q ss_pred cceeeEEEcccCCchhhhhc
Q 038474 476 RHVKYNIISGTSMACPHAAA 495 (667)
Q Consensus 476 ~~~~y~~~SGTSMAaPhVAa 495 (667)
.|..++|||||||+||+
T Consensus 220 ---~~~~~~GTS~AaP~vaG 236 (264)
T cd07481 220 ---GYGSSSGTSMAAPHVAG 236 (264)
T ss_pred ---ceEeeCcHHHHHHHHHH
Confidence 68999999999999993
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-35 Score=304.30 Aligned_cols=222 Identities=28% Similarity=0.444 Sum_probs=171.8
Q ss_pred CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474 99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG 178 (667)
Q Consensus 99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag 178 (667)
|+||+|+|||+||+++||+|.+.... .+.+...........|..+|||||||+|+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence 89999999999999999999853111 011110001234566788999999999999
Q ss_pred ccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC----CCcEEEeCcCCCCCCCChhhHHHH
Q 038474 179 NKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD----GVDIITISLGDTSAVDLAHDVIAI 245 (667)
Q Consensus 179 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~----g~dVin~SlG~~~~~~~~~~~~~~ 245 (667)
...+. .+...||||+|+|+.+| ..+++++++|+++. +++|||||||.........+.+..
T Consensus 57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~ 129 (264)
T cd07487 57 SGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ 129 (264)
T ss_pred CCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence 86431 22348999999999999 46689999999998 999999999988443556778889
Q ss_pred HHHHhhcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceeeEEEc
Q 038474 246 GAFHAMTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYG 323 (667)
Q Consensus 246 a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~lv~~ 323 (667)
++.++.++|++||+||||+|.... ..+...+++|+|||.+.+..
T Consensus 130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------------- 175 (264)
T cd07487 130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------------- 175 (264)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence 999999999999999999998765 55667899999998653210
Q ss_pred cCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhhchhh
Q 038474 324 KGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMN 403 (667)
Q Consensus 324 ~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~ 403 (667)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEE
Q 038474 404 FLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNII 483 (667)
Q Consensus 404 ~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~ 483 (667)
....++.||++||+. ++++||||+|||.+|+++.+..... .......|..+
T Consensus 176 -----------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~ 226 (264)
T cd07487 176 -----------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEM 226 (264)
T ss_pred -----------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEec
Confidence 002357899999998 8999999999999999987653111 11223579999
Q ss_pred cccCCchhhhh
Q 038474 484 SGTSMACPHAA 494 (667)
Q Consensus 484 SGTSMAaPhVA 494 (667)
+|||||||+||
T Consensus 227 ~GTS~Aap~va 237 (264)
T cd07487 227 SGTSMATPHVS 237 (264)
T ss_pred cccchHHHHHH
Confidence 99999999999
No 17
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-35 Score=304.04 Aligned_cols=145 Identities=22% Similarity=0.312 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCC----CCCCCCCCCCCCcchhhh
Q 038474 99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRD----DGNGSAIDEEGHGSNTAS 174 (667)
Q Consensus 99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~----~~~~~~~D~~gHGThVAg 174 (667)
+++|+|||||||||++||+|.+. ++..+.|.... .......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999742 11122222110 001123468899999999
Q ss_pred hhccccCCCCccccccccceeecccCcEEEEEe-----c----------hhHHHHHHHHHHCCCcEEEeCcCCCCCC--C
Q 038474 175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----G----------EKILAAFDDAIADGVDIITISLGDTSAV--D 237 (667)
Q Consensus 175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~----------~~i~~a~~~a~~~g~dVin~SlG~~~~~--~ 237 (667)
||+ |+||+|+|+.+| . ..+++||+||+++|+||||||||..... .
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 995 689999999999 1 2589999999999999999999987211 1
Q ss_pred ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-Cc--CCCCCceEEEcccc
Q 038474 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FT--SSIAPWLMSVAAST 285 (667)
Q Consensus 238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~ 285 (667)
.....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 13567888899999999999999999998654 33 45678999999865
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.3e-35 Score=306.19 Aligned_cols=176 Identities=23% Similarity=0.242 Sum_probs=128.2
Q ss_pred hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCc
Q 038474 91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHG 169 (667)
Q Consensus 91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHG 169 (667)
++|..+++|+||+|||||||||++||+|.+...... + . .....+.+..+ ........|..|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~--------~-----~~~~~~~~~~~~~~~~~~~~~~~gHG 64 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---Y--------D-----PAVNGYNFVPNVGDIDNDVSVGGGHG 64 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---c--------c-----cccCCcccccccCCcCCCCCCCCCCH
Confidence 479999999999999999999999999986511110 0 0 00000011000 01123455678999
Q ss_pred chhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChh
Q 038474 170 SNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAH 240 (667)
Q Consensus 170 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~ 240 (667)
|||||||+|...+.....|++ .+.|+||+|+|+.+| ..+++++|+++++.|++|||||||... ...+.
T Consensus 65 T~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~ 141 (273)
T cd07485 65 THVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS 141 (273)
T ss_pred HHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence 999999999764332222222 236799999999999 456899999999999999999999872 22344
Q ss_pred hHHHHHHHHhhcC-------CeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474 241 DVIAIGAFHAMTK-------GILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 241 ~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 285 (667)
..+..++..+.++ |++||+||||+|.....+++..|++|+||+++
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~ 193 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD 193 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc
Confidence 5667777777777 99999999999988777788889999998854
No 19
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-35 Score=302.95 Aligned_cols=139 Identities=28% Similarity=0.421 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474 102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV 181 (667)
Q Consensus 102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~ 181 (667)
|+|||||||||.+||+|.+. ++..+++. .....|..+|||||||||+|...
T Consensus 1 V~VavIDsGvd~~hp~l~~~------------------------~~~~~~~~-----~~~~~~~~~HGT~vAgiia~~~~ 51 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV------------------------VIARLFFA-----GPGAPAPSAHGTAVASLLAGAGA 51 (239)
T ss_pred CEEEEEeCCCCCCCcccccC------------------------ccccccCC-----CCCCCCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999742 11111111 11356788999999999999752
Q ss_pred CCCccccccccceeecccCcEEEEEe------------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHH
Q 038474 182 KDASFLGIGQGMARGGVPSARISAYR------------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFH 249 (667)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~l~~~k------------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~ 249 (667)
. . .|+||+|+|+.+| ..++++||+||++.|++|||||||+. ....++.++.+
T Consensus 52 ~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~ 115 (239)
T cd05561 52 Q----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAA 115 (239)
T ss_pred C----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHH
Confidence 1 1 6999999999998 24589999999999999999999975 23567788889
Q ss_pred hhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474 250 AMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST 285 (667)
Q Consensus 250 a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~ 285 (667)
+.++|++||+||||+|+.. ..+|+..|++|+|+|++
T Consensus 116 a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~ 152 (239)
T cd05561 116 AAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD 152 (239)
T ss_pred HHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec
Confidence 9999999999999999753 46777889999998754
No 20
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=9.2e-35 Score=305.67 Aligned_cols=242 Identities=30% Similarity=0.335 Sum_probs=171.3
Q ss_pred cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474 95 RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS 174 (667)
Q Consensus 95 ~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAg 174 (667)
++++|+||+|||||||||++||+|.+... .+.+ ..++++.....+.. ...|..+|||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~------~~~d~~~HGT~vAg 62 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSD------TKDDVDGHGTHVAG 62 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCC------CCCCCCCCcchhhe
Confidence 57899999999999999999999975422 0111 13445554444422 22278999999999
Q ss_pred hhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHH
Q 038474 175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIA 244 (667)
Q Consensus 175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~ 244 (667)
||+|...+.... ..+.|+||+|+|+.+| ..++..+++++.+.+++|||||||......+ ....
T Consensus 63 iia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~--~~~~ 135 (293)
T cd04842 63 IIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY--TLLA 135 (293)
T ss_pred eeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc--chHH
Confidence 999986443211 1238999999999999 1238899999999999999999998732112 2233
Q ss_pred HHHHHhh-c-CCeEEEEecCCCCCCCC---CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceee
Q 038474 245 IGAFHAM-T-KGILTVNSAGNNGPKAG---FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP 319 (667)
Q Consensus 245 ~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~ 319 (667)
.++.++. + +|++||+||||+|.... ..+...+++|+|||++.+.... . .
T Consensus 136 ~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------~---~----------- 189 (293)
T cd04842 136 RAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------G---E----------- 189 (293)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------c---c-----------
Confidence 3333332 3 89999999999997664 5677889999999976442100 0 0
Q ss_pred EEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhh
Q 038474 320 LLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399 (667)
Q Consensus 320 lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~ 399 (667)
.|.
T Consensus 190 -----------~~~------------------------------------------------------------------ 192 (293)
T cd04842 190 -----------GGL------------------------------------------------------------------ 192 (293)
T ss_pred -----------ccc------------------------------------------------------------------
Confidence 000
Q ss_pred chhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCcccee
Q 038474 400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVK 479 (667)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~ 479 (667)
+. ......++.||++||+. ++++||||+|||++|+++++.... ........
T Consensus 193 ----~~-------------------~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~~~ 243 (293)
T cd04842 193 ----GQ-------------------SDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG----IGDTSDSA 243 (293)
T ss_pred ----cc-------------------cCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC----CCCCChhh
Confidence 00 01125678999999998 899999999999999999755310 01112347
Q ss_pred eEEEcccCCchhhhh
Q 038474 480 YNIISGTSMACPHAA 494 (667)
Q Consensus 480 y~~~SGTSMAaPhVA 494 (667)
|...+||||||||||
T Consensus 244 ~~~~~GTS~AaP~Va 258 (293)
T cd04842 244 YTSKSGTSMATPLVA 258 (293)
T ss_pred eeecCcHHHHHHHHH
Confidence 999999999999999
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.1e-33 Score=292.48 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=131.3
Q ss_pred ccccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCC
Q 038474 83 WDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA 162 (667)
Q Consensus 83 ~~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~ 162 (667)
+..++++ .+|..+ +|+||+|||||+||+++||+|... ++...+.+..+ ...+
T Consensus 13 ~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~---~~~~ 64 (260)
T cd07484 13 LDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN---DSDA 64 (260)
T ss_pred ccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC---CCCC
Confidence 3456777 899998 999999999999999999998421 22233333221 2336
Q ss_pred CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDT 233 (667)
Q Consensus 163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~ 233 (667)
.|..+|||||||||++...+.. + +.|+||+|+|+.+| ..+++++++++++.|++|||||||..
T Consensus 65 ~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~ 136 (260)
T cd07484 65 MDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG 136 (260)
T ss_pred CCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 6788999999999998753211 2 38999999999998 45688999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 285 (667)
. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+
T Consensus 137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~ 184 (260)
T cd07484 137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATD 184 (260)
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeC
Confidence 2 34567778888889999999999999998888999999999998854
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-34 Score=302.16 Aligned_cols=150 Identities=26% Similarity=0.270 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCC
Q 038474 103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVK 182 (667)
Q Consensus 103 ~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~ 182 (667)
+|||||||||.+||+|.+. +.....+... ...+.|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~---~~~~~d~~gHGT~vAgiia~~~~~ 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE---PGWTADDLGHGTAVAGLALYGDLT 54 (291)
T ss_pred EEEEecCCCCCCChhhhhh------------------------hccccccccC---CCCcCCCCCChHHHHHHHHcCccc
Confidence 7999999999999999742 1111111110 011578999999999999976432
Q ss_pred CCccccccccceeecccCcEEEEEe-------------chhHHHHHHHHHHCC---CcEEEeCcCCCCCCCCh-hhHHHH
Q 038474 183 DASFLGIGQGMARGGVPSARISAYR-------------GEKILAAFDDAIADG---VDIITISLGDTSAVDLA-HDVIAI 245 (667)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~k-------------~~~i~~a~~~a~~~g---~dVin~SlG~~~~~~~~-~~~~~~ 245 (667)
. ....|+||+++|+.+| ..+++++|+|+++.+ ++|||||||........ ...+..
T Consensus 55 ~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~ 126 (291)
T cd04847 55 L--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA 126 (291)
T ss_pred C--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence 1 1237999999999999 234789999999853 49999999987322111 124555
Q ss_pred HHHH-hhcCCeEEEEecCCCCCCCCC------------cCCCCCceEEEccccCC
Q 038474 246 GAFH-AMTKGILTVNSAGNNGPKAGF------------TSSIAPWLMSVAASTTD 287 (667)
Q Consensus 246 a~~~-a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~d 287 (667)
++.+ +.++|++||+||||+|..... .|..++++|+|||++.+
T Consensus 127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~ 181 (291)
T cd04847 127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSD 181 (291)
T ss_pred HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecC
Confidence 5544 568999999999999986543 24567899999997744
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-33 Score=297.40 Aligned_cols=155 Identities=24% Similarity=0.319 Sum_probs=121.1
Q ss_pred cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474 84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163 (667)
Q Consensus 84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~ 163 (667)
+.++++ .+|+.+++|+||+||||||||+..|| |...++. + +. .+..+ ......
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~------------~~----~~~~~--~~~~~~ 58 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V------------RV----VLAPG--ATDPAC 58 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c------------ee----ecCCC--CCCCCC
Confidence 456777 99999999999999999999999998 7533211 0 00 01000 123456
Q ss_pred CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHHHHCCCcEEEeCcCCCCCCC-
Q 038474 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDAIADGVDIITISLGDTSAVD- 237 (667)
Q Consensus 164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~~g~dVin~SlG~~~~~~- 237 (667)
|+.|||||||+++ .||||+|+|+.+| ..+++++|+||+++|++|||||||......
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~ 120 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRSPG 120 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCCcc
Confidence 7889999998753 5899999999999 457899999999999999999999863211
Q ss_pred --------ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccC
Q 038474 238 --------LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT 286 (667)
Q Consensus 238 --------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~ 286 (667)
.....+..++.+|.++|++||+||||++. .+|+..|++|+|||++.
T Consensus 121 ~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 121 TSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred cccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 12345788888899999999999999975 57889999999999753
No 24
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-33 Score=297.86 Aligned_cols=138 Identities=28% Similarity=0.356 Sum_probs=102.6
Q ss_pred ccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhh
Q 038474 94 QRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTA 173 (667)
Q Consensus 94 ~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVA 173 (667)
+.+++|+||+|||||||||.+||+|.+.. +....|.. ...+.|..|||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~----~~~~~d~~gHGT~VA 53 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVG----GEDVQDGHGHGTHCA 53 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCC----CCCCCCCCCcHHHHH
Confidence 35789999999999999999999997531 11122221 122567899999999
Q ss_pred hhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC---------
Q 038474 174 STAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA--------- 235 (667)
Q Consensus 174 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~--------- 235 (667)
|||+|+..+ +...||||+|+|+.+| ..+++++++||++.|++|||||||....
T Consensus 54 giiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 124 (297)
T cd07480 54 GTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP 124 (297)
T ss_pred HHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence 999998633 2236999999999998 4569999999999999999999998631
Q ss_pred CCChhhHHHHHHHHh---------------hcCCeEEEEecCCCCCCC
Q 038474 236 VDLAHDVIAIGAFHA---------------MTKGILTVNSAGNNGPKA 268 (667)
Q Consensus 236 ~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~ 268 (667)
.......++.....+ .++|++||+||||+|...
T Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 111122333333333 679999999999998654
No 25
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-33 Score=292.29 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=106.5
Q ss_pred cCCChhhhccC-CCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474 86 MGFNESITQRR-TVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID 164 (667)
Q Consensus 86 ig~~~~~w~~~-~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D 164 (667)
|+++ ++|+.. ..|+||+|+|||+|||.+||+|.+..... .. ...+.|
T Consensus 2 i~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------~~-------~~~~~d 49 (277)
T cd04843 2 INAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------IS-------GLTDQA 49 (277)
T ss_pred CChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------cC-------CCCCCC
Confidence 3455 899884 45899999999999999999998531110 00 012567
Q ss_pred CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---chhHHHHHHHHHH----CCCcEEEeCcCCCCCCC
Q 038474 165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---GEKILAAFDDAIA----DGVDIITISLGDTSAVD 237 (667)
Q Consensus 165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---~~~i~~a~~~a~~----~g~dVin~SlG~~~~~~ 237 (667)
+.+|||||||||+|.. +-.| ..||||+|+|+.+| .++++++|.+|++ .++.+||||||......
T Consensus 50 ~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 50 DSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTRVSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred CCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecCCCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 8899999999999963 1123 28999999999999 3678999999988 34678999999862211
Q ss_pred -----ChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474 238 -----LAHDVIAIGAFHAMTKGILTVNSAGNNGPK 267 (667)
Q Consensus 238 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 267 (667)
.....+..++.+|.++|++||+||||++..
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~ 155 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQD 155 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence 123455667888889999999999999865
No 26
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-33 Score=288.63 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=115.8
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCcchhhhhhccc
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHGSNTASTAAGN 179 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHGThVAgiiag~ 179 (667)
||+|||||||||++||+|.+. +...+.|..+ ........|..+|||||||||+|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 56 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG 56 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 799999999999999999753 1111122111 112334567889999999999998
Q ss_pred cCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474 180 KVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~ 251 (667)
.. .+...||||+|+|+.+| ..+++++|+|+++.+++|||||||..... .+++..++....
T Consensus 57 ~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~ 124 (254)
T cd07490 57 GA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALS 124 (254)
T ss_pred CC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHH
Confidence 63 12347999999999999 46789999999999999999999987321 455665555555
Q ss_pred c-CCeEEEEecCCCCCCCCCcCCCCCceEEEccccC
Q 038474 252 T-KGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT 286 (667)
Q Consensus 252 ~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~ 286 (667)
+ +|++||+||||+|.....++...+++|+|||++.
T Consensus 125 ~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~ 160 (254)
T cd07490 125 NQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDR 160 (254)
T ss_pred HcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccc
Confidence 4 6999999999999887778888999999999764
No 27
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-33 Score=290.20 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=115.9
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCc-----------eeEeeeec-cC-----CCCCCCCCC
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNN-----------KIIGARYY-SF-----RDDGNGSAI 163 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~-----------kiig~~~~-~~-----~~~~~~~~~ 163 (667)
||+|||||||||++||+|.+.-.. |.+|..+. +...-.+| .+ .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~------------g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP------------GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc------------CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 799999999999999999864211 11110000 00000000 00 011123345
Q ss_pred CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHH----------HCCCcE
Q 038474 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAI----------ADGVDI 225 (667)
Q Consensus 164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~----------~~g~dV 225 (667)
|..+|||||||||+|...++ .|+ .||||+|+|+.+| .+++++|++|++ .++++|
T Consensus 69 ~~~~HGT~vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~I 140 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKV 140 (285)
T ss_pred CCCCCHHHHHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeE
Confidence 67899999999999986422 222 8999999999999 467999999998 467899
Q ss_pred EEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474 226 ITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST 285 (667)
Q Consensus 226 in~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~ 285 (667)
||||||.... ....+..++..+.++|++||+||||+|... ..++...+++|+|||++
T Consensus 141 in~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~ 198 (285)
T cd07496 141 INLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD 198 (285)
T ss_pred EEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC
Confidence 9999998721 145677888899999999999999999875 56778889999998854
No 28
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=9.2e-33 Score=284.90 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=120.1
Q ss_pred hhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcch
Q 038474 92 ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSN 171 (667)
Q Consensus 92 ~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGTh 171 (667)
.|..+++|+||+|||||+||+.+||+|.+. +...+.|..+ ....|..+||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~----~~~~d~~~HGT~ 68 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG----DPDSDCNGHGTH 68 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC----CCCCCCCccHHH
Confidence 677789999999999999999999999742 2222333211 125678899999
Q ss_pred hhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC-----CCcEEEeCcCCCCCCC
Q 038474 172 TASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD-----GVDIITISLGDTSAVD 237 (667)
Q Consensus 172 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~-----g~dVin~SlG~~~~~~ 237 (667)
|||||++.. .||||+|+|+.+| .++++++++++++. +++|||||||...
T Consensus 69 vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--- 131 (255)
T cd04077 69 VAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--- 131 (255)
T ss_pred HHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC---
Confidence 999999863 6999999999999 36789999999987 4899999999872
Q ss_pred ChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST 285 (667)
Q Consensus 238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~ 285 (667)
...+..++..+.++|+++|+||||+|... ...+...|++|+|||.+
T Consensus 132 --~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~ 178 (255)
T cd04077 132 --STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATD 178 (255)
T ss_pred --CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccC
Confidence 45677788889999999999999999765 45677889999998864
No 29
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-33 Score=282.85 Aligned_cols=151 Identities=26% Similarity=0.334 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474 102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV 181 (667)
Q Consensus 102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~ 181 (667)
|+|||||+||+++||+|.+. .+++..+.+..+ ...+.|..+|||||||||+|+..
T Consensus 1 V~VaviDsGi~~~hp~l~~~----------------------~~~~~~~~~~~~---~~~~~~~~~HGT~vAgiiag~~~ 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK----------------------PKLVPGWNFVSN---NDPTSDIDGHGTACAGVAAAVGN 55 (242)
T ss_pred CEEEEecCCCCCCChhhccC----------------------cCccCCccccCC---CCCCCCCCCCHHHHHHHHHhccC
Confidence 78999999999999999852 001111111111 12456789999999999999753
Q ss_pred CCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhc
Q 038474 182 KDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMT 252 (667)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~ 252 (667)
+. ..+.|+||+|+|+.+| ..++.++++++++.+++|||||||...........+..++..+.+
T Consensus 56 ~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 56 NG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred CC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 21 1238999999999999 456889999999999999999999874434456778888888888
Q ss_pred -CCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474 253 -KGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 253 -~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 285 (667)
+|++||+||||+|......++..+++|+|||.+
T Consensus 128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~ 161 (242)
T cd07498 128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD 161 (242)
T ss_pred cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeC
Confidence 999999999999987767788899999999864
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.98 E-value=5.1e-32 Score=274.49 Aligned_cols=146 Identities=31% Similarity=0.394 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~ 180 (667)
||+|||||+||+.+||+|.+. ++..+.|..+. .....|..+|||||||+|++..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~--~~~~~~~~~HGT~vA~ii~~~~ 54 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDD--NNDYQDGNGHGTHVAGIIAALD 54 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCC--CCCCCCCCCCHHHHHHHHhccc
Confidence 799999999999999999743 11222222110 0345678899999999999975
Q ss_pred CCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474 181 VKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~ 251 (667)
... .+.|+||+|+|+.+| ..+++++++++++.|++|||||||... ....+..++..+.
T Consensus 55 ~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~ 121 (229)
T cd07477 55 NGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAY 121 (229)
T ss_pred CCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHH
Confidence 321 238999999999999 357899999999999999999999872 2345667777888
Q ss_pred cCCeEEEEecCCCCCCCCCc--CCCCCceEEEcccc
Q 038474 252 TKGILTVNSAGNNGPKAGFT--SSIAPWLMSVAAST 285 (667)
Q Consensus 252 ~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~ 285 (667)
++|+++|+||||+|...... ++..+++|+||+++
T Consensus 122 ~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~ 157 (229)
T cd07477 122 AAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVD 157 (229)
T ss_pred HCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeec
Confidence 99999999999999876654 88889999998864
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.98 E-value=1.2e-32 Score=287.46 Aligned_cols=158 Identities=32% Similarity=0.483 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCC
Q 038474 103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVK 182 (667)
Q Consensus 103 ~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~ 182 (667)
+|||||||||++||+|....+ ...++.+.+.|..+........|..+|||||||+|+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCCc------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 699999999999999972111 112334455555432234556778999999999999986 2
Q ss_pred CCccccccccceeecccCcEEEEEe--------chhHHHHHHHHH-HCCCcEEEeCcCC--CCCCCChhhHHHHHHHHhh
Q 038474 183 DASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAI-ADGVDIITISLGD--TSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~-~~g~dVin~SlG~--~~~~~~~~~~~~~a~~~a~ 251 (667)
.+..+ ..|+||+|+|+.+| ..++++++++++ +.+++|||||||. ..........+..++..+.
T Consensus 62 -~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 135 (282)
T PF00082_consen 62 -NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAE 135 (282)
T ss_dssp -SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHH
T ss_pred -ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccccccccc
Confidence 22212 38999999999999 446899999999 8999999999998 3112233445666777888
Q ss_pred cCCeEEEEecCCCCCCCCC---cCCCCCceEEEcccc
Q 038474 252 TKGILTVNSAGNNGPKAGF---TSSIAPWLMSVAAST 285 (667)
Q Consensus 252 ~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~ 285 (667)
++|+++|+||||+|..... .+...+++|+||+.+
T Consensus 136 ~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~ 172 (282)
T PF00082_consen 136 KKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD 172 (282)
T ss_dssp HTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE
T ss_pred ccCcceeeccccccccccccccccccccccccccccc
Confidence 9999999999999876543 555668889998753
No 32
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=1.1e-31 Score=277.41 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=117.7
Q ss_pred CCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccc---cccCCCCccCCceeE--eeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKG---ACDGGKNFTCNNKII--GARYYSFRDDGNGSAIDEEGHGSNTAS 174 (667)
Q Consensus 100 ~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g---~~~~g~~f~~n~kii--g~~~~~~~~~~~~~~~D~~gHGThVAg 174 (667)
+||+|||||||||++||+|.+. .|.. .+..+.+...+..+. ..+.|. ....++.|..+|||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~HGT~va~ 71 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGWNFV---NNDNDPMDDNGHGTHVAG 71 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCccccc---CCCCCCCCCCCcHHHHHH
Confidence 6999999999999999999863 2321 111111111111111 011111 123456788999999999
Q ss_pred hhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHH
Q 038474 175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAI 245 (667)
Q Consensus 175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~ 245 (667)
||+|...++. .+.|+||+|+|+.+| ..+++++++++++.+++|||+|||.... ...+..
T Consensus 72 ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~ 139 (259)
T cd07473 72 IIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRD 139 (259)
T ss_pred HHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHH
Confidence 9999864322 138999999999999 4568999999999999999999998722 567778
Q ss_pred HHHHhhcCCeEEEEecCCCCCCC---CCcCC--CCCceEEEcccc
Q 038474 246 GAFHAMTKGILTVNSAGNNGPKA---GFTSS--IAPWLMSVAAST 285 (667)
Q Consensus 246 a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~ 285 (667)
++.++.++|++||+||||+|... ..++. ..+++|+||+.+
T Consensus 140 ~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~ 184 (259)
T cd07473 140 AIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD 184 (259)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC
Confidence 88889999999999999998762 24444 347888887754
No 33
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-31 Score=280.71 Aligned_cols=268 Identities=25% Similarity=0.398 Sum_probs=205.0
Q ss_pred HHHHHHcCCCeeEEEcCcccccCCC---------------------------------CCcc------------ccCCCh
Q 038474 56 EIQKLAGMKGVVSVFPSRTLQLHTT---------------------------------RSWD------------FMGFNE 90 (667)
Q Consensus 56 ~~~~L~~~p~V~~v~~~~~~~~~~~---------------------------------~s~~------------~ig~~~ 90 (667)
++++|..+|.|+.|.|.+.+.+-.. ..|. .++++
T Consensus 113 ~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad- 191 (1033)
T KOG4266|consen 113 EIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD- 191 (1033)
T ss_pred eeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-
Confidence 5889999999999999877643110 0010 13344
Q ss_pred hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcc
Q 038474 91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGS 170 (667)
Q Consensus 91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGT 170 (667)
-+|+.|++|++|+|||+|||+..+||.|+.-.- ..+|. | .....|..||||
T Consensus 192 ~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKE---RTNWT-----------N---------------E~tLdD~lgHGT 242 (1033)
T KOG4266|consen 192 HLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKE---RTNWT-----------N---------------EDTLDDNLGHGT 242 (1033)
T ss_pred hHHhccccCCceEEEEeecccccCCccccchhh---hcCCc-----------C---------------ccccccCcccce
Confidence 799999999999999999999999999973200 01121 1 234556789999
Q ss_pred hhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhh
Q 038474 171 NTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHD 241 (667)
Q Consensus 171 hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~ 241 (667)
.|||+|||.. ...|.||+++|++++ ++..+.||.+|+....||+|+|.|++ ++.+.
T Consensus 243 FVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~ 307 (1033)
T KOG4266|consen 243 FVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDL 307 (1033)
T ss_pred eEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccc
Confidence 9999999874 237999999999999 77899999999999999999999997 57778
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCC--ceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceee
Q 038474 242 VIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAP--WLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP 319 (667)
Q Consensus 242 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~ 319 (667)
|+-.-+......++++|.|+||+||-.+|..+++. .||.||..
T Consensus 308 PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI----------------------------------- 352 (1033)
T KOG4266|consen 308 PFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI----------------------------------- 352 (1033)
T ss_pred hHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-----------------------------------
Confidence 88777788888999999999999998888776653 33333321
Q ss_pred EEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhh
Q 038474 320 LLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399 (667)
Q Consensus 320 lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~ 399 (667)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCC----CCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCc
Q 038474 400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNK----YVPDILKPDISAPGVNILAAYSPLAPISRDIEDE 475 (667)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~----~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~ 475 (667)
...+.+|.|||||-+. ...||+||||++-|.+|....-.
T Consensus 353 --------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~----------- 395 (1033)
T KOG4266|consen 353 --------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS----------- 395 (1033)
T ss_pred --------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-----------
Confidence 1136889999999765 25899999999999998866443
Q ss_pred cceeeEEEcccCCchhhhhcC-----------------------CCcCCCC-C-CCcCcccccccCccCCCC
Q 038474 476 RHVKYNIISGTSMACPHAAAW-----------------------PMNSSKN-T-QAEFAYGSGHINPVKATN 522 (667)
Q Consensus 476 ~~~~y~~~SGTSMAaPhVAa~-----------------------~i~~~~~-~-~~~~~~GaG~in~~~A~~ 522 (667)
.+...+||||.|+|.||+. +|..+.. + ...|.||+|++|..++++
T Consensus 396 --~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 396 --TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred --ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHH
Confidence 3577899999999999931 1111122 3 367899999999988866
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.97 E-value=5.4e-31 Score=277.08 Aligned_cols=139 Identities=29% Similarity=0.405 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccC----CCCCCCCCCCCCCCcchhhhhh
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF----RDDGNGSAIDEEGHGSNTASTA 176 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~----~~~~~~~~~D~~gHGThVAgii 176 (667)
.|+|||||||||++||+|.+.-... .+. +.....+.. .........|..||||||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii 63 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SKN-------------LVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI 63 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----ccc-------------cccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence 3899999999999999998521100 000 000000000 0111234567899999999999
Q ss_pred ccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC-------Chh
Q 038474 177 AGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVD-------LAH 240 (667)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~-------~~~ 240 (667)
+|... ..||||+|+|+.+| ..+++++|++|++.+++|||||||...... ...
T Consensus 64 a~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~ 131 (294)
T cd07482 64 AANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEY 131 (294)
T ss_pred hcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhh
Confidence 98642 15999999999999 446899999999999999999999752211 112
Q ss_pred hHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 038474 241 DVIAIGAFHAMTKGILTVNSAGNNGPKA 268 (667)
Q Consensus 241 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 268 (667)
..+..++..+.++|++||+||||+|...
T Consensus 132 ~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 132 NAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 4566777788899999999999999653
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.97 E-value=6.5e-31 Score=277.13 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=111.0
Q ss_pred ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCC--
Q 038474 85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA-- 162 (667)
Q Consensus 85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~-- 162 (667)
-+++. .+|+.+++|+||+|+|||||||++||+|.+..... ..+.|..... ...+
T Consensus 25 ~~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~----------------------~~~~~~~~~~-~~~~~~ 80 (297)
T cd04059 25 DLNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE----------------------ASYDFNDNDP-DPTPRY 80 (297)
T ss_pred CcccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc----------------------ccccccCCCC-CCCCcc
Confidence 35566 89999999999999999999999999997531110 1112211100 1122
Q ss_pred CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-------GEKILAAFDDAIADGVDIITISLGDTSA 235 (667)
Q Consensus 163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-------~~~i~~a~~~a~~~g~dVin~SlG~~~~ 235 (667)
.|..||||||||||+|...... | ..||||+|+|+.+| ......++.++. +.++|||||||....
T Consensus 81 ~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vin~S~g~~~~ 151 (297)
T cd04059 81 DDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNP-DYIDIYSNSWGPDDD 151 (297)
T ss_pred ccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCccccHHHHHHHhccc-CCceEEECCCCCCCC
Confidence 2788999999999999853211 2 28999999999999 122344444443 356999999997632
Q ss_pred CC---ChhhHHHHHHHHhhc-----CCeEEEEecCCCCCCCCC----cCCCCCceEEEcccc
Q 038474 236 VD---LAHDVIAIGAFHAMT-----KGILTVNSAGNNGPKAGF----TSSIAPWLMSVAAST 285 (667)
Q Consensus 236 ~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~ 285 (667)
.. .....+..++.++.. +|++||+||||+|..... .....|++|+|||++
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 21 112233334444332 799999999999973221 223567889998754
No 36
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.1e-29 Score=256.50 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=107.4
Q ss_pred CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474 101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180 (667)
Q Consensus 101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~ 180 (667)
||+|||||||||++||+|.+.-.. +..+.+ . .+ ........|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~~------~-~~---~~~~~~~~d~~gHGT~vAgiia~~- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTID------L-EI---IVVSAEGGDKDGHGTACAGIIKKY- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------cccccc------c-cc---ccCCCCCCCCCCcHHHHHHHHHcc-
Confidence 799999999999999999853111 000100 0 00 111344567899999999999853
Q ss_pred CCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474 181 VKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~ 251 (667)
+|+++|+.+| ..++++|++|++++|++|||||||... ......+..++.++.
T Consensus 58 -----------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~ 118 (222)
T cd07492 58 -----------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAY 118 (222)
T ss_pred -----------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHH
Confidence 4999999998 456899999999999999999999872 223356777888888
Q ss_pred cCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474 252 TKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285 (667)
Q Consensus 252 ~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 285 (667)
++|+++|+||||++... .+|+..+.+|+|++.+
T Consensus 119 ~~g~l~V~aagN~~~~~-~~Pa~~~~vi~V~~~~ 151 (222)
T cd07492 119 KAGGIIVAAAPNNNDIG-TPPASFPNVIGVKSDT 151 (222)
T ss_pred HCCCEEEEECCCCCCCC-CCCccCCceEEEEecC
Confidence 89999999999998754 3477788999998754
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.96 E-value=6.7e-29 Score=256.80 Aligned_cols=155 Identities=30% Similarity=0.364 Sum_probs=115.0
Q ss_pred CCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCcchhhhhh
Q 038474 98 VESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHGSNTASTA 176 (667)
Q Consensus 98 ~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHGThVAgii 176 (667)
+|+||+|+|||+||+.+||+|.+...... .+... ........|..+|||||||+|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~HGT~vagii 56 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS------------------------YYVAVNDAGYASNGDGDSHGTHVAGVI 56 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc------------------------cccccccccCCCCCCCCChHHHHHHHH
Confidence 69999999999999999999985422110 00000 000134556889999999999
Q ss_pred ccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC---------
Q 038474 177 AGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVD--------- 237 (667)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~--------- 237 (667)
+|...+ ....|+||+|+|+.+| ...+.++++++++.+++|||||||......
T Consensus 57 ag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 127 (267)
T cd04848 57 AAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGS 127 (267)
T ss_pred hcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhh
Confidence 998633 2338999999999999 146788999999999999999999873221
Q ss_pred --ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCc---------CCCCCceEEEcccc
Q 038474 238 --LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFT---------SSIAPWLMSVAAST 285 (667)
Q Consensus 238 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~ 285 (667)
.....+...+..+.++|+++|+||||++...... +...+++|+||+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~ 186 (267)
T cd04848 128 AATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVD 186 (267)
T ss_pred ccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEec
Confidence 1445667777888899999999999998654332 23457888888765
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=3.6e-28 Score=248.32 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHH--HHCCCcEEEeCcCCC
Q 038474 161 SAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDA--IADGVDIITISLGDT 233 (667)
Q Consensus 161 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a--~~~g~dVin~SlG~~ 233 (667)
...|.+||||||||||||. .|++|+++|+..+ ...+.++++|+ .+.+++|||||||..
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~~~~~~~~~i~~~~~~~~gv~VINmS~G~~ 96 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIKSNNGQWQECLEAQQNGNNVKIINHSYGEG 96 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCCCCCccHHHHHHHHHhcCCceEEEeCCccC
Confidence 3567899999999999987 3667999998755 35688888888 668999999999987
Q ss_pred CCCC-----ChhhHHHHHHHHhhcC-CeEEEEecCCCCCCCC-----CcCCCCCceEEEcccc
Q 038474 234 SAVD-----LAHDVIAIGAFHAMTK-GILTVNSAGNNGPKAG-----FTSSIAPWLMSVAAST 285 (667)
Q Consensus 234 ~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVgA~~ 285 (667)
.... +..+.+..++..+.++ |+++|+||||+|.... ..+..++++|+|||++
T Consensus 97 ~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 97 LKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred CCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 3332 1234566777777665 9999999999998532 2345678899999875
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=264.58 Aligned_cols=112 Identities=29% Similarity=0.406 Sum_probs=86.6
Q ss_pred CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474 165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDT 233 (667)
Q Consensus 165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~ 233 (667)
..-|||||||||+|+..... ...|+||+|+|+.++ ...+.+||..++++.+||||||||-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 35699999999999974432 237999999999999 44588999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCC---CCceEEEccc
Q 038474 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSI---APWLMSVAAS 284 (667)
Q Consensus 234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~ 284 (667)
...+.....++..-..+.+.|+++|+||||+||.-.|++++ ...+|.|||.
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAY 434 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAY 434 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeee
Confidence 43333334444443334478999999999999988777653 4577888773
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.91 E-value=6.4e-24 Score=214.63 Aligned_cols=152 Identities=30% Similarity=0.458 Sum_probs=112.2
Q ss_pred cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474 102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV 181 (667)
Q Consensus 102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~ 181 (667)
|+|+|||+|++++||+|... ..... ....+...........|..+||||||++|++...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 68999999999999987210 00000 0001110000112455788999999999999863
Q ss_pred CCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHH-HCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474 182 KDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAI-ADGVDIITISLGDTSAVDLAHDVIAIGAFHAM 251 (667)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~-~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~ 251 (667)
... ..|+||+++|+.+| ...+++++++++ +.+++|||||||..... ....+...+..+.
T Consensus 60 ~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~ 128 (241)
T cd00306 60 NGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYAL 128 (241)
T ss_pred CCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHH
Confidence 211 17999999999999 245899999999 89999999999987221 3456677777888
Q ss_pred cC-CeEEEEecCCCCCCCC---CcCCCCCceEEEcccc
Q 038474 252 TK-GILTVNSAGNNGPKAG---FTSSIAPWLMSVAAST 285 (667)
Q Consensus 252 ~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~ 285 (667)
++ |+++|+||||.+.... ..++..+++|+||+.+
T Consensus 129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 77 9999999999998765 4777889999999865
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.3e-19 Score=197.80 Aligned_cols=144 Identities=23% Similarity=0.345 Sum_probs=108.6
Q ss_pred hhhcc--CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCC-CCCCCCC
Q 038474 91 SITQR--RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNG-SAIDEEG 167 (667)
Q Consensus 91 ~~w~~--~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~-~~~D~~g 167 (667)
..|.. +++|+|++|+|||+||+..||+|.+.... .++|..+ ... ...|..+
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~d~~~ 184 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------------------GGDFVDG--DPEPPFLDDNG 184 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------------------ccccccC--CCCCCCCCCCC
Confidence 68887 89999999999999999999999853110 0122111 011 2568899
Q ss_pred CcchhhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCC--CcEEEeCcCCCCC
Q 038474 168 HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADG--VDIITISLGDTSA 235 (667)
Q Consensus 168 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g--~dVin~SlG~~~~ 235 (667)
|||||+|++++.... + .....|+||+++++.++ ..+++++++++++.+ +++||||+|.. .
T Consensus 185 hGt~vag~ia~~~~~--~-----~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 185 HGTHVAGTIAAVIFD--N-----GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred Ccceeeeeeeeeccc--C-----CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 999999999985211 1 11238999999999998 455789999999999 99999999985 2
Q ss_pred CCChhhHHHHHHHHhhcCC-eEEEEecCCCCCCC
Q 038474 236 VDLAHDVIAIGAFHAMTKG-ILTVNSAGNNGPKA 268 (667)
Q Consensus 236 ~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~ 268 (667)
.......+..++..++..| +++|+|+||.|...
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 3344556677777887766 99999999999764
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.58 E-value=1.7e-14 Score=156.24 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=79.7
Q ss_pred cceeecccCcEEEEEe-----chhHHHHHHHHHHC---CCcEEEeCcCCCCCCC--ChhhHHHHHHHHhhcCCeEEEEec
Q 038474 192 GMARGGVPSARISAYR-----GEKILAAFDDAIAD---GVDIITISLGDTSAVD--LAHDVIAIGAFHAMTKGILTVNSA 261 (667)
Q Consensus 192 g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~~---g~dVin~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV~AA 261 (667)
..+.||||+|+|++|+ ..+++.++.+++.+ +++|||+|||...... .+...+..++.+|..+||+||+|+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAs 160 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAAS 160 (361)
T ss_pred HHHHhccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 4458999999999999 26789999999988 9999999999873221 234667888888999999999999
Q ss_pred CCCCCCCC-----------CcCCCCCceEEEccccCCc
Q 038474 262 GNNGPKAG-----------FTSSIAPWLMSVAASTTDR 288 (667)
Q Consensus 262 GN~G~~~~-----------~~~~~~p~vitVgA~~~d~ 288 (667)
||+|.... .+++.+|||++||+++...
T Consensus 161 Gd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 161 GDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99997653 3567889999999987654
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.9e-12 Score=132.65 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=106.5
Q ss_pred hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCC--CCC
Q 038474 91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAID--EEG 167 (667)
Q Consensus 91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D--~~g 167 (667)
.+|..+++|++|++||+|.||||-|||+..+ ..--.+++|..+ +.++..-.| .+.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssndpfpyprytddwfns 209 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSNDPFPYPRYTDDWFNS 209 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccCCCCCCCcccchhhhc
Confidence 8999999999999999999999999999732 122344555443 333333333 679
Q ss_pred CcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--chhHHHHHHHHHH-----CCCcEEEeCcCCCCCCCC--
Q 038474 168 HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GEKILAAFDDAIA-----DGVDIITISLGDTSAVDL-- 238 (667)
Q Consensus 168 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--~~~i~~a~~~a~~-----~g~dVin~SlG~~~~~~~-- 238 (667)
|||.|||-+++...+ ++.| .|||.+.++..+| +.-.+.-+..|-. ..++|.+.|||.......
T Consensus 210 hgtrcagev~aardn--gicg------vgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvd 281 (629)
T KOG3526|consen 210 HGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVD 281 (629)
T ss_pred cCccccceeeeeccC--Ccee------eeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccC
Confidence 999999998887644 3444 5999999999999 2223333333333 347899999998732211
Q ss_pred -hhhHHHHHHHHhhc-----CCeEEEEecCCCCCCCCC-cC--CCCCceEEEcc
Q 038474 239 -AHDVIAIGAFHAMT-----KGILTVNSAGNNGPKAGF-TS--SIAPWLMSVAA 283 (667)
Q Consensus 239 -~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~-~~--~~~p~vitVgA 283 (667)
..+...+|+.+-++ .|-+.|+|.|..|..... .. +.+-|.|++-+
T Consensus 282 gprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 282 GPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred CchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 22333334433333 467999999998864322 21 23457776643
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.15 E-value=2.3e-10 Score=107.60 Aligned_cols=107 Identities=26% Similarity=0.297 Sum_probs=82.6
Q ss_pred CCceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCccc----ccccce
Q 038474 314 KGKMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVSL----ILPFPA 382 (667)
Q Consensus 314 ~~~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~~~iP~ 382 (667)
.....++++.+. |....+ .+++||||||+| .+|..+++++||.++|++++....... ...+|+
T Consensus 24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~ 97 (143)
T cd02133 24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPV 97 (143)
T ss_pred CCcEEEEEEccC------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeE
Confidence 346678888754 333333 579999999997 578999999999999999987653222 235899
Q ss_pred EEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE-eeeeeecCCCCCcccccCCCCCCC
Q 038474 383 STVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI-LKTSVIKDSDAPIVASFSSRGPNK 441 (667)
Q Consensus 383 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~t~~~~~~~~~~a~FSSrGPt~ 441 (667)
+.|+.++|++|++ |+++ +++| +..+.. ..+++.++.||||||+.
T Consensus 98 v~Is~~dG~~L~~--------~l~~------~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 98 VFISKEDGEALKA--------ALES------SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EEecHHHHHHHHH--------HHhC------CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999 7753 4566 555555 56789999999999974
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.12 E-value=5.1e-10 Score=102.72 Aligned_cols=111 Identities=35% Similarity=0.544 Sum_probs=86.8
Q ss_pred EEeCCCeEEEEEEeeeccCCCCceeeEEEccCCC---CCCCCCcccc--ccccccEEEEee------chhhHHHHhcCce
Q 038474 294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVT---NSSSCTEDYA--NLVKGNIVLCDE------FSGYHVAREAGAA 362 (667)
Q Consensus 294 ~~~~~~~~~~g~~s~~~~~~~~~~~~lv~~~~~~---~~~~C~~~~~--~~~~gkIvl~~~------~~~~~~~~~~Ga~ 362 (667)
++|+||+.+.| +++++... ..+++++..... ....|....+ .+++||||||+| .++..+++++||.
T Consensus 2 i~LGng~~i~G-~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVG-QSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEE-EEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 67899999999 99997554 456777643321 2248988777 679999999987 3578899999999
Q ss_pred EEEEecCCCCCccc---ccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE
Q 038474 363 GLILKDNRLYNVSL---ILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI 417 (667)
Q Consensus 363 g~i~~~~~~~~~~~---~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i 417 (667)
|+|++++....... ...+|++.|+.++++.|++ |++++ ++++++|
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~--------y~~~~--~~~~~~i 126 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILS--------YINST--SNPTATI 126 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHH--------HHHcC--CCcceeC
Confidence 99999987654322 2569999999999999999 99987 6666653
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=1.7e-09 Score=91.32 Aligned_cols=78 Identities=36% Similarity=0.444 Sum_probs=55.6
Q ss_pred CEEEEeCCCCCCCCCchhHHHHHHHHHhc---C-CCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccc
Q 038474 1 VYIVYMGSLPEGEYLPSSHHQSILEEVVE---G-SSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQ 76 (667)
Q Consensus 1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 76 (667)
+|||.|++..........+.+++.+.+.+ . ...+.++++.|+..||||+++++++++++|+++|+|++|+||..++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 59999999875222244555555433322 1 3457799999988999999999999999999999999999999887
Q ss_pred cC
Q 038474 77 LH 78 (667)
Q Consensus 77 ~~ 78 (667)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.40 E-value=2.9e-07 Score=80.77 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=55.9
Q ss_pred eeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCC-------Ccccccccce
Q 038474 317 MFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLY-------NVSLILPFPA 382 (667)
Q Consensus 317 ~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~iP~ 382 (667)
..+|+..........|..... .+++||||||+| .+|..+++++||.|+|+++.... .......||+
T Consensus 7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~ 86 (101)
T PF02225_consen 7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV 86 (101)
T ss_dssp EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence 346663333222234554444 889999999988 68999999999999999992211 1233456999
Q ss_pred EEeChhhHHHHHH
Q 038474 383 STVTPDKFNSIIH 395 (667)
Q Consensus 383 ~~i~~~~g~~l~~ 395 (667)
+.|+..+|++|++
T Consensus 87 v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 87 VFISYEDGEALLA 99 (101)
T ss_dssp EEE-HHHHHHHHH
T ss_pred EEeCHHHHhhhhc
Confidence 9999999999998
No 48
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.28 E-value=3.2e-06 Score=76.69 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc-------cccccceEEeChhhHHHHHHh
Q 038474 330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS-------LILPFPASTVTPDKFNSIIHQ 396 (667)
Q Consensus 330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~iP~~~i~~~~g~~l~~~ 396 (667)
+.|.+..+ .+++||||||+| .+|..+++++||+++|++++...... ....+|++.|+.++++.|++
T Consensus 28 ~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~- 106 (118)
T cd04818 28 DGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKA- 106 (118)
T ss_pred cccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHH-
Confidence 38998887 789999999987 47899999999999999988764221 12459999999999999999
Q ss_pred hhhchhhhhccc
Q 038474 397 FYQVIMNFLRSS 408 (667)
Q Consensus 397 ~~~~~~~~~~~~ 408 (667)
|++..
T Consensus 107 -------~l~~g 111 (118)
T cd04818 107 -------ALAAG 111 (118)
T ss_pred -------HHhcC
Confidence 88754
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.28 E-value=3.7e-06 Score=76.77 Aligned_cols=78 Identities=24% Similarity=0.242 Sum_probs=60.8
Q ss_pred eeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-----c---cccccc
Q 038474 317 MFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-----S---LILPFP 381 (667)
Q Consensus 317 ~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-----~---~~~~iP 381 (667)
..+|++... ...+.|.+..+ .+++||||||+| .+|..+++++||+++|++|+..... . ....+|
T Consensus 18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP 96 (122)
T cd04816 18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVP 96 (122)
T ss_pred EEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeee
Confidence 346666432 22358988766 689999999998 5789999999999999999876311 0 223499
Q ss_pred eEEeChhhHHHHHH
Q 038474 382 ASTVTPDKFNSIIH 395 (667)
Q Consensus 382 ~~~i~~~~g~~l~~ 395 (667)
++.|+..+|++|++
T Consensus 97 ~~~Is~~~G~~l~~ 110 (122)
T cd04816 97 VGVITKAAGAALRR 110 (122)
T ss_pred EEEEcHHHHHHHHH
Confidence 99999999999999
No 50
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.21 E-value=1.2e-05 Score=73.31 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=59.3
Q ss_pred eeeEEEccCCCCCCCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCC-CCCcc------cccccceE
Q 038474 317 MFPLLYGKGVTNSSSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNR-LYNVS------LILPFPAS 383 (667)
Q Consensus 317 ~~~lv~~~~~~~~~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~-~~~~~------~~~~iP~~ 383 (667)
.-++++.. ...|.+..+ .+++|||||++| .+|..+++++||.++|++|+. ..... ....+|++
T Consensus 23 ~g~lv~~~----~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v 98 (122)
T cd02130 23 TGPLVVVP----NLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTV 98 (122)
T ss_pred EEEEEEeC----CCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEE
Confidence 45677653 236887666 679999999998 689999999999999999987 32211 12359999
Q ss_pred EeChhhHHHHHH
Q 038474 384 TVTPDKFNSIIH 395 (667)
Q Consensus 384 ~i~~~~g~~l~~ 395 (667)
.|+.++|+.|++
T Consensus 99 ~Is~~~G~~L~~ 110 (122)
T cd02130 99 GISQEDGKALVA 110 (122)
T ss_pred EecHHHHHHHHH
Confidence 999999999999
No 51
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.20 E-value=2.2e-05 Score=70.48 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=57.1
Q ss_pred eEEEEEEEEecCCCCeeEEEEEec--------CCc----------e-EEEEEcCEEEEeeCCcEEEEEEEEEeec---CC
Q 038474 586 TIKFPRTVTNIGLPNSTYKARILQ--------NSK----------I-SVNVVPEVLSFRSLNEKKSFIVTVTGKG---LA 643 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~v~~--------p~g----------~-~v~v~P~~l~f~~~g~~~~~~Vt~~~~~---~~ 643 (667)
..+++-|++|.|+...+|+++... ..| . .+...|.+|++ ++|++++++|+|+.+. ..
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCcc
Confidence 578899999999999999998751 011 1 67888999999 9999999999999954 23
Q ss_pred CCCeEEEEEEEEc-CCe-EEEeeEE
Q 038474 644 SGSIVSAALVWFD-GSH-IVRSPIV 666 (667)
Q Consensus 644 ~~~~~~G~l~w~~-~~h-~vr~P~~ 666 (667)
+..+++|+|.+++ ..+ .+++|+.
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 4689999999997 444 8999984
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.12 E-value=9.9e-06 Score=73.20 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=62.0
Q ss_pred ceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-------ccccccc
Q 038474 316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-------SLILPFP 381 (667)
Q Consensus 316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~~iP 381 (667)
..+||+..... ..|.+... .+++|||+|++| .+|..+++++||.++|++|+..... .....||
T Consensus 20 ~~~~~~~~~~~---~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP 96 (120)
T cd02129 20 TLLPLRNLTSS---VLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIP 96 (120)
T ss_pred cceeeecCCCc---CCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCccc
Confidence 44666665543 38998776 689999999999 7899999999999999999976311 1234589
Q ss_pred eEEeChhhHHHHHH
Q 038474 382 ASTVTPDKFNSIIH 395 (667)
Q Consensus 382 ~~~i~~~~g~~l~~ 395 (667)
+++|+..+|++|++
T Consensus 97 ~v~Is~~dG~~i~~ 110 (120)
T cd02129 97 VALLSYKDMLDIQQ 110 (120)
T ss_pred EEEEeHHHHHHHHH
Confidence 99999999999998
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.08 E-value=2.3e-05 Score=71.05 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c----------ccccccceEEeChhhHHH
Q 038474 330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V----------SLILPFPASTVTPDKFNS 392 (667)
Q Consensus 330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~----------~~~~~iP~~~i~~~~g~~ 392 (667)
+.|.+... .+++|||+|++| .+|..+++++||.++|++|+.... . .....||++.|+..+|+.
T Consensus 22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~ 101 (118)
T cd02127 22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM 101 (118)
T ss_pred ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence 47987555 689999999999 789999999999999999976531 1 122359999999999999
Q ss_pred HHH
Q 038474 393 IIH 395 (667)
Q Consensus 393 l~~ 395 (667)
|++
T Consensus 102 L~~ 104 (118)
T cd02127 102 IRK 104 (118)
T ss_pred HHH
Confidence 999
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.00 E-value=2.5e-05 Score=72.72 Aligned_cols=72 Identities=18% Similarity=0.107 Sum_probs=57.0
Q ss_pred cCCCCCCCCCcccc----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCC-CCccc------ccccceEEeCh
Q 038474 324 KGVTNSSSCTEDYA----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRL-YNVSL------ILPFPASTVTP 387 (667)
Q Consensus 324 ~~~~~~~~C~~~~~----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~~------~~~iP~~~i~~ 387 (667)
......+.|.+... .+++|+|+|++| .+|..+++++||.++|++|+.. ....+ ...+|.++|+.
T Consensus 39 ~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~ 118 (138)
T cd02122 39 DPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN 118 (138)
T ss_pred CCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence 33334458987553 678999999999 6899999999999999999986 21111 12589999999
Q ss_pred hhHHHHHH
Q 038474 388 DKFNSIIH 395 (667)
Q Consensus 388 ~~g~~l~~ 395 (667)
.+|++|++
T Consensus 119 ~~G~~l~~ 126 (138)
T cd02122 119 PKGMEILE 126 (138)
T ss_pred HHHHHHHH
Confidence 99999999
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.99 E-value=1.6e-05 Score=72.54 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCccc--c--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC--c--c-----cccccceEEeChhhHHH
Q 038474 331 SCTEDY--A--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN--V--S-----LILPFPASTVTPDKFNS 392 (667)
Q Consensus 331 ~C~~~~--~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~--~--~-----~~~~iP~~~i~~~~g~~ 392 (667)
.|.+.. + .+++||||||+| .+|..+++++||+|+|++++.... . . ....+|++.|+..+|++
T Consensus 32 ~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~ 111 (126)
T cd00538 32 GCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEA 111 (126)
T ss_pred EEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHH
Confidence 687765 3 779999999987 578999999999999999987632 1 1 22469999999999999
Q ss_pred HHHhhhhchhhhhccc
Q 038474 393 IIHQFYQVIMNFLRSS 408 (667)
Q Consensus 393 l~~~~~~~~~~~~~~~ 408 (667)
|++ |+.+.
T Consensus 112 l~~--------~~~~~ 119 (126)
T cd00538 112 LLS--------LLEAG 119 (126)
T ss_pred HHH--------HHhcC
Confidence 999 87654
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.96 E-value=3.5e-05 Score=72.05 Aligned_cols=75 Identities=12% Similarity=0.238 Sum_probs=58.8
Q ss_pred eeeEEEccCCCCCCCCCccccccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCccc---------ccccce
Q 038474 317 MFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVSL---------ILPFPA 382 (667)
Q Consensus 317 ~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~---------~~~iP~ 382 (667)
..+++.... .+.|.+.. .+++|||+|++| .+|..+++++||.++|++|+......+ ...||+
T Consensus 39 ~~~lv~~~~---~~gC~~~~-~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~ 114 (139)
T cd02132 39 KTRAVLANP---LDCCSPST-SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPV 114 (139)
T ss_pred EEEEEECCc---ccccCCCC-cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeE
Confidence 445555432 34798654 589999999999 689999999999999999887532111 246999
Q ss_pred EEeChhhHHHHHH
Q 038474 383 STVTPDKFNSIIH 395 (667)
Q Consensus 383 ~~i~~~~g~~l~~ 395 (667)
+.|+..+|++|++
T Consensus 115 v~Is~~~G~~L~~ 127 (139)
T cd02132 115 VMIPQSAGDALNK 127 (139)
T ss_pred EEecHHHHHHHHH
Confidence 9999999999999
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.94 E-value=2.1e-05 Score=72.22 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC------c---------ccccccceEEeChh
Q 038474 330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN------V---------SLILPFPASTVTPD 388 (667)
Q Consensus 330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~------~---------~~~~~iP~~~i~~~ 388 (667)
+.|.+... .+++|||+|++| .+|..+++++||.++|++|+.+.. . .....||+++|+..
T Consensus 28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~ 107 (126)
T cd02126 28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107 (126)
T ss_pred hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence 47987666 679999999999 689999999999999999876531 0 01345999999999
Q ss_pred hHHHHHH
Q 038474 389 KFNSIIH 395 (667)
Q Consensus 389 ~g~~l~~ 395 (667)
+|+.|++
T Consensus 108 dG~~L~~ 114 (126)
T cd02126 108 EGSKLLA 114 (126)
T ss_pred HHHHHHH
Confidence 9999999
No 58
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.89 E-value=3.4e-05 Score=69.81 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCCCccccccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c--------ccccccceEEeChhhHHHHHH
Q 038474 330 SSCTEDYANLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V--------SLILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 330 ~~C~~~~~~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~--------~~~~~iP~~~i~~~~g~~l~~ 395 (667)
+.|.+....+++|||||++| .+|..+++++||+++|++|+.... . .....+|++.|+.+++++|++
T Consensus 28 ~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~ 107 (117)
T cd04813 28 DACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSS 107 (117)
T ss_pred CCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHH
Confidence 48987755889999999999 789999999999999999877642 1 122359999999999999988
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.84 E-value=9.7e-05 Score=67.85 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCCCcccc---c-----cccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c-------------ccccccce
Q 038474 330 SSCTEDYA---N-----LVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V-------------SLILPFPA 382 (667)
Q Consensus 330 ~~C~~~~~---~-----~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~-------------~~~~~iP~ 382 (667)
+.|.+... . ...+||+|++| .+|..+|+++||+++|++|+.+.. . .....||+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 47876544 1 37889999999 689999999999999999986542 1 11235899
Q ss_pred EEeChhhHHHHHH
Q 038474 383 STVTPDKFNSIIH 395 (667)
Q Consensus 383 ~~i~~~~g~~l~~ 395 (667)
++|+..+|+.|++
T Consensus 103 v~Is~~~G~~L~~ 115 (127)
T cd02125 103 ALITKAFGEKLKK 115 (127)
T ss_pred EEECHHHHHHHHH
Confidence 9999999999999
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.79 E-value=0.00011 Score=67.62 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=56.9
Q ss_pred eeEEEccCCC--CCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc----cccccceEE
Q 038474 318 FPLLYGKGVT--NSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS----LILPFPAST 384 (667)
Q Consensus 318 ~~lv~~~~~~--~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~----~~~~iP~~~ 384 (667)
+|++...-.. ..+.|.+... .+++|||+|++| .+|..+++++||+++|++|+.+.... ....+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 5655543322 2348986543 679999999999 68999999999999999998764321 122366666
Q ss_pred eChhhHHHHHH
Q 038474 385 VTPDKFNSIIH 395 (667)
Q Consensus 385 i~~~~g~~l~~ 395 (667)
+ .++|++|++
T Consensus 108 ~-~~~G~~l~~ 117 (129)
T cd02124 108 T-PEDGEAWID 117 (129)
T ss_pred e-HHHHHHHHH
Confidence 6 999999999
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.74 E-value=7.2e-05 Score=69.53 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=48.5
Q ss_pred ccccccEEEEee---c-------hhhHHHHhcCceEEEEecCC--CCCc-----c--cccccceEEeChhhHHHHHH
Q 038474 338 NLVKGNIVLCDE---F-------SGYHVAREAGAAGLILKDNR--LYNV-----S--LILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 338 ~~~~gkIvl~~~---~-------~~~~~~~~~Ga~g~i~~~~~--~~~~-----~--~~~~iP~~~i~~~~g~~l~~ 395 (667)
.+++|||+|++| . +|..+|+++||+++|+||+. +... . ....||++.|++.+|++|++
T Consensus 53 ~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 53 GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 579999999998 2 67899999999999999998 4321 1 13469999999999999999
No 62
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0003 Score=83.86 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=88.5
Q ss_pred hhhccCCCCCCcEEEEEc-CCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCc
Q 038474 91 SITQRRTVESDLIVGVID-TGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHG 169 (667)
Q Consensus 91 ~~w~~~~~G~gv~VgViD-tGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHG 169 (667)
.+.+.+.+|+|++||||| =|-.+...++. .-|+.. |.......++. +.+ -..+|+
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~--------~Fd~~~---Gip~~~~~~V~----~ig---------~g~~~~ 274 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLY--------SFDQQY---GIPNPILSRVT----YIG---------PGIGSG 274 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHH--------HHHHhh---CCCCCCceEEE----EeC---------CCCCCC
Confidence 455667899999999999 55444433332 111110 00000011111 110 235677
Q ss_pred chhhhhhccccCCCCccccccccceeecccCcEEEEEe-chhHHHHHHHHHH----CCC-cEEEeCcCCCC--CCCC--h
Q 038474 170 SNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-GEKILAAFDDAIA----DGV-DIITISLGDTS--AVDL--A 239 (667)
Q Consensus 170 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-~~~i~~a~~~a~~----~g~-dVin~SlG~~~--~~~~--~ 239 (667)
||=+.-+ -+......-+||+|+|..+- ....+-|++-|+. .-+ -++-.||+... ...+ .
T Consensus 275 ~~g~~E~-----------sLDVE~s~A~AP~A~I~lvvap~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~ 343 (1174)
T COG4934 275 TGGAEET-----------SLDVEWSHAMAPKANIDLVVAPNPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGY 343 (1174)
T ss_pred CCccccc-----------eeehhhhhccCccCceEEEEcCCCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHH
Confidence 7754311 12334457899999999988 3333334443332 111 33335665431 1222 3
Q ss_pred hhHHHHHHHHhhcCCeEEEEecCCCCCCCCC--------cCCCCCceEEEcc
Q 038474 240 HDVIAIGAFHAMTKGILTVNSAGNNGPKAGF--------TSSIAPWLMSVAA 283 (667)
Q Consensus 240 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 283 (667)
-+.+..-...|..+||.+++|+|-+|....+ .++.+|+|++||-
T Consensus 344 ~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 344 ADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 3445555567778999999999999866543 4567899999987
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.61 E-value=0.00042 Score=63.70 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=57.5
Q ss_pred CceeeEEEccCCCCCCCCCccccccccccEEEEee--c-----hhhHHHHhcCceEEEEecCCCCCcc----------cc
Q 038474 315 GKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE--F-----SGYHVAREAGAAGLILKDNRLYNVS----------LI 377 (667)
Q Consensus 315 ~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~--~-----~~~~~~~~~Ga~g~i~~~~~~~~~~----------~~ 377 (667)
....++++.+.....+.+ -.+++|||||+++ . +|..+++++||+|+|++++...... ..
T Consensus 22 ~~~~~lV~~g~G~~~d~~----~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~ 97 (127)
T cd04819 22 EAKGEPVDAGYGLPKDFD----GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPP 97 (127)
T ss_pred CeeEEEEEeCCCCHHHcC----CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCC
Confidence 346788887643211111 1569999999998 2 4789999999999999987665321 12
Q ss_pred cccceEEeChhhHHHHHHh
Q 038474 378 LPFPASTVTPDKFNSIIHQ 396 (667)
Q Consensus 378 ~~iP~~~i~~~~g~~l~~~ 396 (667)
..+|++.|+.+++++|+++
T Consensus 98 ~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 98 SPIPAASVSGEDGLRLARV 116 (127)
T ss_pred CCCCEEEEeHHHHHHHHHH
Confidence 3599999999999999993
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.43 E-value=0.00029 Score=66.92 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCCCcccc-----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-c--------cccccceEEeChhhH
Q 038474 330 SSCTEDYA-----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-S--------LILPFPASTVTPDKF 390 (667)
Q Consensus 330 ~~C~~~~~-----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-~--------~~~~iP~~~i~~~~g 390 (667)
+.|.+... ..+.|||+|++| .+|..+|+++||.++|++|+..... . ....||+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 47886553 678999999999 7899999999999999999865421 1 134699999999999
Q ss_pred HHHHH
Q 038474 391 NSIIH 395 (667)
Q Consensus 391 ~~l~~ 395 (667)
+.|+.
T Consensus 131 ~~L~~ 135 (153)
T cd02123 131 EILKK 135 (153)
T ss_pred HHHHH
Confidence 99999
No 65
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0042 Score=68.67 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC---CCCCCCCC
Q 038474 87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR---DDGNGSAI 163 (667)
Q Consensus 87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~---~~~~~~~~ 163 (667)
.+. ..|..+++|.++.|+|+|+|+...||+..+. + ...+..++..+ ..+-.+..
T Consensus 21 ~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~---------------------~~~~s~d~~~~~~~p~~~~~~~ 77 (431)
T KOG3525|consen 21 NVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y---------------------DPLGSYDVNRHDNDPEPRCDGT 77 (431)
T ss_pred eee-eccccCCCCCceEEEEeeccccccCcccccc-c---------------------CcceeEeeecCCCCcccccCCC
Confidence 344 7899999999999999999999999999742 1 22333333322 11122233
Q ss_pred CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--ch---hHHHHHHHHHH-CCCcEEEeCcCCCCCCC
Q 038474 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GE---KILAAFDDAIA-DGVDIITISLGDTSAVD 237 (667)
Q Consensus 164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--~~---~i~~a~~~a~~-~g~dVin~SlG~~~~~~ 237 (667)
....|||-|++-.+....+.. -..|+++++++..++ .. +...+...... .-+++-+.|||......
T Consensus 78 ~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 78 NENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred CccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeecccceecccccCCCCCceeecCcCCcccCCC
Confidence 458899999999998862211 126999999999888 22 22222222222 34789999999763221
Q ss_pred ---ChhhHHHHHHHHhh-----cCCeEEEEecCCCCCCCCC
Q 038474 238 ---LAHDVIAIGAFHAM-----TKGILTVNSAGNNGPKAGF 270 (667)
Q Consensus 238 ---~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~ 270 (667)
........+...+. .+|-+.|+|.||.|.....
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 11222333333333 4788999999999865544
No 66
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.41 E-value=0.015 Score=54.93 Aligned_cols=80 Identities=20% Similarity=0.120 Sum_probs=56.3
Q ss_pred ceeeEEEccCCCCCCCCCcccc--ccccccEEEEeec-----------------------hhhHHHHhcCceEEEEecCC
Q 038474 316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDEF-----------------------SGYHVAREAGAAGLILKDNR 370 (667)
Q Consensus 316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~~-----------------------~~~~~~~~~Ga~g~i~~~~~ 370 (667)
...++|+.+.......|..... .+++|||||+.+. .|..+++++||+|+|++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 3568888876655557776665 7899999999652 47899999999999999987
Q ss_pred CCCcccccccc------eEEeChhhHHHHHH
Q 038474 371 LYNVSLILPFP------ASTVTPDKFNSIIH 395 (667)
Q Consensus 371 ~~~~~~~~~iP------~~~i~~~~g~~l~~ 395 (667)
.........+| ++.++....+.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 100 NSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred cccCcccccccccCccceEEechHHHHHHhh
Confidence 65322111122 56677666666665
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.35 E-value=0.059 Score=47.17 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCCCCCcEEEeecCCCceeEEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCe
Q 038474 568 KDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSI 647 (667)
Q Consensus 568 ~~lNypsi~~~~~~~~~~~~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~ 647 (667)
..|++..+.+.. ..+.+-+++|.|..+..|++.......-.++|+|..-.+ ++|++.+++|+|..... .+.
T Consensus 9 ~~ldFG~v~~g~------~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~ 79 (102)
T PF14874_consen 9 KELDFGNVFVGQ------TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGD 79 (102)
T ss_pred CEEEeeEEccCC------EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--Cce
Confidence 355555554422 556677889999999999987654334557778877656 89999999999995432 345
Q ss_pred EEEEEEEEcCCeEEEeeEE
Q 038474 648 VSAALVWFDGSHIVRSPIV 666 (667)
Q Consensus 648 ~~G~l~w~~~~h~vr~P~~ 666 (667)
+.+.|...-.+..+.+|+-
T Consensus 80 ~~~~l~i~~e~~~~~i~v~ 98 (102)
T PF14874_consen 80 YEGSLVITTEGGSFEIPVK 98 (102)
T ss_pred EEEEEEEEECCeEEEEEEE
Confidence 7899988776677877763
No 68
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.30 E-value=0.011 Score=54.83 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.3
Q ss_pred ccccccEEEEeec-----------hh-------hHHHHhcCceEEEEecCCCC------Cc-----ccccccceEEeChh
Q 038474 338 NLVKGNIVLCDEF-----------SG-------YHVAREAGAAGLILKDNRLY------NV-----SLILPFPASTVTPD 388 (667)
Q Consensus 338 ~~~~gkIvl~~~~-----------~~-------~~~~~~~Ga~g~i~~~~~~~------~~-----~~~~~iP~~~i~~~ 388 (667)
.+++|||||+++. .| ...++++||.++|++|.... .. .....+|++.|+.+
T Consensus 36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e 115 (134)
T cd04815 36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE 115 (134)
T ss_pred hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence 5799999999871 22 58899999999999986421 11 11234999999999
Q ss_pred hHHHHHHh
Q 038474 389 KFNSIIHQ 396 (667)
Q Consensus 389 ~g~~l~~~ 396 (667)
++..|.++
T Consensus 116 d~~~L~r~ 123 (134)
T cd04815 116 DADMLERL 123 (134)
T ss_pred cHHHHHHH
Confidence 99999983
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.28 E-value=0.0067 Score=58.95 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=46.8
Q ss_pred ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc-------------------------------------
Q 038474 338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS------------------------------------- 375 (667)
Q Consensus 338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~------------------------------------- 375 (667)
.+++|||||+++ .+|..+|+++||+|+|+|++......
T Consensus 52 v~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~ 131 (183)
T cd02128 52 VSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSS 131 (183)
T ss_pred CCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccccc
Confidence 479999999997 67999999999999999988421000
Q ss_pred cccccceEEeChhhHHHHHH
Q 038474 376 LILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 376 ~~~~iP~~~i~~~~g~~l~~ 395 (667)
....||++-|+..++..|++
T Consensus 132 ~lP~IPs~PIS~~da~~lL~ 151 (183)
T cd02128 132 GLPNIPAQTISAAAAAKLLS 151 (183)
T ss_pred CCCCCCEeccCHHHHHHHHH
Confidence 01238999999999999999
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.93 E-value=0.016 Score=53.72 Aligned_cols=57 Identities=25% Similarity=0.127 Sum_probs=45.7
Q ss_pred ceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----------------chhhHHHHhcCceEEEEecCCCC
Q 038474 316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----------------FSGYHVAREAGAAGLILKDNRLY 372 (667)
Q Consensus 316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----------------~~~~~~~~~~Ga~g~i~~~~~~~ 372 (667)
...++|+.+.......|....+ .+++|||||+.+ ..|..++.++||+|+|++++...
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567888876655557886665 799999999986 14889999999999999998653
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.87 E-value=0.021 Score=53.38 Aligned_cols=58 Identities=24% Similarity=0.176 Sum_probs=45.9
Q ss_pred CceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----------------------chhhHHHHhcCceEEEEecC
Q 038474 315 GKMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----------------------FSGYHVAREAGAAGLILKDN 369 (667)
Q Consensus 315 ~~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----------------------~~~~~~~~~~Ga~g~i~~~~ 369 (667)
....++|+.+.......|....+ .+++|||||+.+ ..|..+++++||+|+|++++
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 34578888876554457887666 699999999964 24889999999999999998
Q ss_pred CCC
Q 038474 370 RLY 372 (667)
Q Consensus 370 ~~~ 372 (667)
...
T Consensus 99 ~~~ 101 (142)
T cd04814 99 LAP 101 (142)
T ss_pred CCc
Confidence 763
No 72
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.54 E-value=0.14 Score=42.56 Aligned_cols=57 Identities=21% Similarity=0.157 Sum_probs=38.0
Q ss_pred eeEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474 585 FTIKFPRTVTNIGLPN-STYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 585 ~~~~~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
.+.+++-+|+|-|... ...++++..|.|-++...|.++.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 3688999999999765 55888999999999888998876449999999999999875
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.60 E-value=0.072 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=31.0
Q ss_pred ccccccEEEEee-----chhhHHHHhcCceEEEEecCCC
Q 038474 338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRL 371 (667)
Q Consensus 338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~ 371 (667)
-+++|||||++. ..|..+|++.||+|+|||.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999986 7899999999999999999865
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.38 E-value=0.15 Score=51.36 Aligned_cols=51 Identities=25% Similarity=0.196 Sum_probs=39.2
Q ss_pred ceeeEEEccCCCCCCCCCcccc-------ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCC
Q 038474 316 KMFPLLYGKGVTNSSSCTEDYA-------NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLY 372 (667)
Q Consensus 316 ~~~~lv~~~~~~~~~~C~~~~~-------~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~ 372 (667)
...++||... |....+ .+++|||||+++ .+|..+|+++||+|+|++++...
T Consensus 45 v~g~lVyvny------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANY------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCC------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 3567887763 433221 579999999986 46899999999999999998653
No 75
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.83 E-value=0.45 Score=52.11 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=49.4
Q ss_pred ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC---------cccccccceEEeChhhHHHHHH
Q 038474 338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN---------VSLILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~iP~~~i~~~~g~~l~~ 395 (667)
.++++|++++.| .+|+..++++||.++++.|+.... ......||+++|++++++.+..
T Consensus 92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~ 163 (541)
T KOG2442|consen 92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNK 163 (541)
T ss_pred ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHh
Confidence 779999999998 899999999999999999995421 1233459999999999999986
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.55 E-value=1.7 Score=39.15 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=39.3
Q ss_pred EEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecC
Q 038474 588 KFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGL 642 (667)
Q Consensus 588 ~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~ 642 (667)
.++-+++|....+.+|++++..++|+++......+++ ++|++..+.|.+.++..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 4777899999999999999999999999665588998 89999999999999763
No 77
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=87.40 E-value=1.3 Score=42.23 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=29.2
Q ss_pred ccccccEEEEee------------------------chhhHHHHhcCceEEEEecCCC
Q 038474 338 NLVKGNIVLCDE------------------------FSGYHVAREAGAAGLILKDNRL 371 (667)
Q Consensus 338 ~~~~gkIvl~~~------------------------~~~~~~~~~~Ga~g~i~~~~~~ 371 (667)
.+++||||++.. ..|...+.+.||.|+|++.+..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 789999999984 1388999999999999997754
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.09 E-value=5.7 Score=43.78 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=54.0
Q ss_pred eEEEEEEEEecCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEE
Q 038474 586 TIKFPRTVTNIGLPNST-YKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALV 653 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~t-Y~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~ 653 (667)
..++.-.+.|.|+.+-| -++++..|.|-++.|+|.++---++|+.+++.+|++++.....+-++=.|+
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~ 466 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT 466 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence 57788889999987644 789999999999999999877669999999999999976433333444443
No 79
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=0.8 Score=53.93 Aligned_cols=82 Identities=30% Similarity=0.364 Sum_probs=61.2
Q ss_pred CCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhhcC-----------
Q 038474 428 APIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAW----------- 496 (667)
Q Consensus 428 ~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa~----------- 496 (667)
...+..+|||||+. ||-+--.|.|||+.|-|. |... ...-..|.|||||+|++++.
T Consensus 451 p~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ 517 (1304)
T KOG1114|consen 451 PSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQ 517 (1304)
T ss_pred CCCccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhc
Confidence 34578999999999 999999999999988764 2211 12467899999999999921
Q ss_pred ------------CCcCCCC-C-CCcCcccccccCccCCCC
Q 038474 497 ------------PMNSSKN-T-QAEFAYGSGHINPVKATN 522 (667)
Q Consensus 497 ------------~i~~~~~-~-~~~~~~GaG~in~~~A~~ 522 (667)
++.++.. . -.+|.||.|+|++.+|.+
T Consensus 518 ni~ytpysVrrAlenTa~~l~~id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 518 NIPYTPYSVRRALENTATKLGDIDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCCCcHHHHHHHHHhcccccCccchhccCcceeehhHHHH
Confidence 1111222 1 277999999999999954
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=82.73 E-value=31 Score=31.30 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=50.2
Q ss_pred eEEEEEEEEecCCCCeeEEEEEec----CCce--------------------EEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPNSTYKARILQ----NSKI--------------------SVNVVPEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~v~~----p~g~--------------------~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
+.++.-+|+|.++...+|.+++.. ..|+ -|++ |..+++ +++|++.++++++.+.
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcCC
Confidence 788999999999999999987632 1111 1222 566888 8999999999999877
Q ss_pred CCCCCeEEEEEEEE
Q 038474 642 LASGSIVSAALVWF 655 (667)
Q Consensus 642 ~~~~~~~~G~l~w~ 655 (667)
..-.+.+-|-|.+.
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 55556777777765
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.05 E-value=16 Score=32.76 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=43.8
Q ss_pred EEEEEEEEecCCCCeeEEEEEec---CC----ceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 038474 587 IKFPRTVTNIGLPNSTYKARILQ---NS----KISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF 655 (667)
Q Consensus 587 ~~~~rtvtNvg~~~~tY~~~v~~---p~----g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~ 655 (667)
.+.+.+|+|-|+.+..+.+.+.. .. .-.+.|+|..+.+ ++|+++.++| +.....+.+.-..=+|.+.
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 45667888998877777777664 11 1247799999999 8999999999 6643323333233344443
No 82
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=75.61 E-value=3.4 Score=38.74 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=55.4
Q ss_pred eeeEEEccCCCCCCCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc-------------cc
Q 038474 317 MFPLLYGKGVTNSSSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS-------------LI 377 (667)
Q Consensus 317 ~~~lv~~~~~~~~~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~-------------~~ 377 (667)
.++||-+.... .|+.... -+..|.|.|++| ..|..+++++||..+|+.++...... ..
T Consensus 65 ~~~lV~adPp~---aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~ 141 (193)
T KOG3920|consen 65 NLELVLADPPH---ACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDR 141 (193)
T ss_pred CcceeecCChh---HHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccc
Confidence 35666554433 7877666 778899999999 67899999999999999988764322 12
Q ss_pred cccceEEeChhhHHHHHH
Q 038474 378 LPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 378 ~~iP~~~i~~~~g~~l~~ 395 (667)
..+|++.+-..+|--++.
T Consensus 142 AniPa~fllg~~Gy~ir~ 159 (193)
T KOG3920|consen 142 ANIPAVFLLGVTGYYIRV 159 (193)
T ss_pred cCCceEEEeccceEEEeh
Confidence 459999988877754433
No 83
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.73 E-value=6.6 Score=42.07 Aligned_cols=58 Identities=12% Similarity=-0.075 Sum_probs=46.6
Q ss_pred ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-------ccccccceEEeChhhHHHHHH
Q 038474 338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-------SLILPFPASTVTPDKFNSIIH 395 (667)
Q Consensus 338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~~iP~~~i~~~~g~~l~~ 395 (667)
......++|+.| .+|..+||++|.+++|+||+..... .....++++.++...|+.|.+
T Consensus 76 ~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~ 145 (348)
T KOG4628|consen 76 TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSS 145 (348)
T ss_pred CCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHH
Confidence 445667888888 7899999999999999999866431 122348999999999999988
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=69.08 E-value=18 Score=40.39 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=47.2
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
.-.++-++.|....+.+|+.+++.+++.++...++.+++ ++||+.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 345677889999999999999999999999876568888 8999999999998864
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=67.29 E-value=50 Score=28.65 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=39.4
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEee
Q 038474 586 TIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGK 640 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 640 (667)
..+..-+|+|.++..-.|++....|... .|.|..-.+ .+|++..++|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 3556668999999989999998888765 567998777 899999999999874
No 86
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=65.92 E-value=20 Score=29.85 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=30.8
Q ss_pred EEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCC
Q 038474 614 SVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGS 658 (667)
Q Consensus 614 ~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~~~~ 658 (667)
.++|.|+.+++ ..|+++.|+++++.... .- ...+.|....
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEECC
Confidence 58899999999 78999999999765431 12 7788898644
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=62.93 E-value=31 Score=32.15 Aligned_cols=67 Identities=7% Similarity=0.074 Sum_probs=46.7
Q ss_pred EEEEEEEEecCCC-CeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 038474 587 IKFPRTVTNIGLP-NSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF 655 (667)
Q Consensus 587 ~~~~rtvtNvg~~-~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~ 655 (667)
+.+.-.+-|.-+. -..-+++.....++++.=.|..+++ .|++.+.++.+|+.... ..++.||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSt-etGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSST-ETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEec-cCCEEEEEEEEe
Confidence 3444444554321 1123444445567888888999999 89999999999998763 357999999986
No 88
>COG1470 Predicted membrane protein [Function unknown]
Probab=60.79 E-value=96 Score=34.61 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=45.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEEe-cCCceEEEEEcC-----EEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPNSTYKARIL-QNSKISVNVVPE-----VLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~v~-~p~g~~v~v~P~-----~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
+..|+.++.|.|..+.+|..++. .|+|..+...=. ++.+ ++||++.|+|.+....
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 67888999999999999999999 788877766644 3445 7899999999998765
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=48.99 E-value=1.5e+02 Score=24.72 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred eEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEcCEE-EEeeCCcEEEEEEEEEee
Q 038474 586 TIKFPRTVTNIGLPN-STYKARILQNSKISVNVVPEVL-SFRSLNEKKSFIVTVTGK 640 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l-~f~~~g~~~~~~Vt~~~~ 640 (667)
..+++-+|+|.|... ..+.+.+... |..+ .-..+ .| ++|+++++++++...
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 788889999999864 5566666443 3222 11122 44 789999888888875
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=47.35 E-value=70 Score=23.43 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=23.6
Q ss_pred EEEecCCCCeeEEEEEecCCc-eEEEEEcCEEEEeeCCcEEEEEEEE
Q 038474 592 TVTNIGLPNSTYKARILQNSK-ISVNVVPEVLSFRSLNEKKSFIVTV 637 (667)
Q Consensus 592 tvtNvg~~~~tY~~~v~~p~g-~~v~v~P~~l~f~~~g~~~~~~Vt~ 637 (667)
+++|+|+.+-.-. .++..=| ..++. +.=.+ +|||+..++|++
T Consensus 3 ~~~N~g~~~L~I~-~v~tsCgCt~~~~--~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 3 EFTNTGDSPLVIT-DVQTSCGCTTAEY--SKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEECCCCcEEEE-EeeEccCCEEeeC--CcceE-CCCCEEEEEEEC
Confidence 5678887644432 2233323 23333 33234 899999998875
No 91
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=40.74 E-value=13 Score=17.25 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.5
Q ss_pred ccCCCC
Q 038474 433 SFSSRG 438 (667)
Q Consensus 433 ~FSSrG 438 (667)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 92
>PLN03080 Probable beta-xylosidase; Provisional
Probab=35.05 E-value=62 Score=39.05 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=43.1
Q ss_pred eEEEEEEEEecCCCCeeEEEE--EecCCceEEEEEc------CEEEEeeCCcEEEEEEEEEe-ec----CCCCCeE--EE
Q 038474 586 TIKFPRTVTNIGLPNSTYKAR--ILQNSKISVNVVP------EVLSFRSLNEKKSFIVTVTG-KG----LASGSIV--SA 650 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~~~--v~~p~g~~v~v~P------~~l~f~~~g~~~~~~Vt~~~-~~----~~~~~~~--~G 650 (667)
..+++-+|||+|+.+....+. +..|.. .+..-+ +++.+ ++||++++++++.. .. .....|+ -|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCc
Confidence 478899999999876555443 333422 111111 23334 78999999888875 32 1122332 35
Q ss_pred EEEEE--cCCeEEEee
Q 038474 651 ALVWF--DGSHIVRSP 664 (667)
Q Consensus 651 ~l~w~--~~~h~vr~P 664 (667)
...+. +..|.|+.+
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 44432 345666654
No 93
>PRK13203 ureB urease subunit beta; Reviewed
Probab=33.00 E-value=63 Score=28.33 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|....+ |+ .+.| +||+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 456778899999865 334431111 12444444 33 4567 88999977654
No 94
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=31.93 E-value=77 Score=25.03 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=23.9
Q ss_pred EEEEeeCCcEEEEEEEEEeecCC-CC-CeEEEEEEEEc--CCeE
Q 038474 621 VLSFRSLNEKKSFIVTVTGKGLA-SG-SIVSAALVWFD--GSHI 660 (667)
Q Consensus 621 ~l~f~~~g~~~~~~Vt~~~~~~~-~~-~~~~G~l~w~~--~~h~ 660 (667)
+++|.-.|++-+-++||++.... .. .----.|.|+| |.|+
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~DsaG~H~ 58 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDSAGDHR 58 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEETTEEEE
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEeccCCCcc
Confidence 67788788888889999986521 12 22568899998 4454
No 95
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=31.84 E-value=92 Score=27.29 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=29.2
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|....+ |+ .+.| +||+++++++.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 356777899999864 334431111 12555554 32 4667 88999977654
No 96
>PRK13202 ureB urease subunit beta; Reviewed
Probab=31.65 E-value=86 Score=27.57 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=29.0
Q ss_pred EEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 587 IKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 587 ~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
.+++.+|+|.|+.+ +-|+.--.. --|..+.+ |+ .+.| +||+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEEE
Confidence 46778899999865 335431111 12555544 32 4667 88999977654
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.30 E-value=2.9e+02 Score=26.95 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=40.6
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec---C-CceEEEEEc-C--EEEEeeCCcEEEEEEEEEeecCCCCCeEEEE
Q 038474 585 FTIKFPRTVTNIGLPNSTYKARILQ---N-SKISVNVVP-E--VLSFRSLNEKKSFIVTVTGKGLASGSIVSAA 651 (667)
Q Consensus 585 ~~~~~~rtvtNvg~~~~tY~~~v~~---p-~g~~v~v~P-~--~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~ 651 (667)
...+++.++.|+|+. .-|.+++.. | ..+++ |+- . ++.--++|+..+.++++++.. .+.+.++.
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~~--~G~f~~~~ 107 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPKK--SGYFNFTP 107 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeeee--eEEEEccC
Confidence 378999999999985 668888765 2 44444 221 1 122228899999988888764 23444443
No 98
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=30.82 E-value=4.2e+02 Score=24.23 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=16.2
Q ss_pred EEEeeCCcEEEEEEEEEeec
Q 038474 622 LSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 622 l~f~~~g~~~~~~Vt~~~~~ 641 (667)
++.+.+||.+.|.|.+.+..
T Consensus 75 VTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 75 VTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEcCCCceEEEEEEeecCC
Confidence 66667899999999988755
No 99
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=29.38 E-value=4.3e+02 Score=23.88 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=34.7
Q ss_pred eEEEEEEEEecCCCCeeEE----EEEecCCce----EEEE---EcCEEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPNSTYK----ARILQNSKI----SVNV---VPEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY~----~~v~~p~g~----~v~v---~P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
...+..++||.|..+.+-. +......|. .+.- .|..+++ ++|++..+.|+.....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~ 84 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVG 84 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCC
Confidence 5578888999998654421 122111222 1111 3667888 8999999999998754
No 100
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.88 E-value=87 Score=27.40 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=28.9
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|....+ |+ .+.| +||+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 355777889999864 334431111 12444544 32 4567 88999977654
No 101
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=27.17 E-value=1.4e+02 Score=35.94 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=34.0
Q ss_pred eEEEEEEEEecCCCCeeE--EEEEecCCceEEEEEc-------CEEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPNSTY--KARILQNSKISVNVVP-------EVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~tY--~~~v~~p~g~~v~v~P-------~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
..+++-+|||+|+.+..- .+-+..|.+ .+. .| +++.+ ++||++++++++....
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 688999999999865433 333444432 121 23 12344 8999999998888653
No 102
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=26.10 E-value=1.9e+02 Score=29.43 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=34.3
Q ss_pred EEEEEEecCCCCeeEEEEEe---cC---C----------ceEEEEEcCEEEEeeCCcEEEEEEEEEe
Q 038474 589 FPRTVTNIGLPNSTYKARIL---QN---S----------KISVNVVPEVLSFRSLNEKKSFIVTVTG 639 (667)
Q Consensus 589 ~~rtvtNvg~~~~tY~~~v~---~p---~----------g~~v~v~P~~l~f~~~g~~~~~~Vt~~~ 639 (667)
...+|.|-|+.+.-+.+++. .| . .-++-++|..|.+ ++|+++.++|.-..
T Consensus 35 ~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 35 TSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 45677888887777776642 22 1 1257789999999 88888887765543
No 103
>PRK13205 ureB urease subunit beta; Reviewed
Probab=25.49 E-value=1.1e+02 Score=28.84 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=30.0
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|..+.+ |+ .+.| .||+++++++.
T Consensus 19 R~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 19 REAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 456788899999865 345432111 12555554 33 4667 88999977754
No 104
>PRK13201 ureB urease subunit beta; Reviewed
Probab=24.87 E-value=1.2e+02 Score=27.81 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=29.1
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|..+.+ |+ .+.| .||+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 356778899999864 334431111 12444544 32 4567 88999977654
No 105
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=24.02 E-value=4.7e+02 Score=22.56 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=34.9
Q ss_pred eEEEEEEEEecCCCC-eeEE-----EEEecCCce---EEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474 586 TIKFPRTVTNIGLPN-STYK-----ARILQNSKI---SVNVVPEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~-~tY~-----~~v~~p~g~---~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
..++.-+++|..+.. .+-+ .+++.+ |+ .....-..+++ +||++.+++++|....
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 678888999998876 5522 233433 44 35666667777 8999999999998754
No 106
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=22.94 E-value=69 Score=26.24 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=28.4
Q ss_pred EEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc
Q 038474 614 SVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD 656 (667)
Q Consensus 614 ~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~~ 656 (667)
+|++.|..+++ ..|+++.|++++....... ..+.|..
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 47889999998 8899999999988765332 5566764
No 107
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=22.37 E-value=4.7e+02 Score=21.89 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=12.8
Q ss_pred cCEEEEeeCCcEEEEEEEEEeec
Q 038474 619 PEVLSFRSLNEKKSFIVTVTGKG 641 (667)
Q Consensus 619 P~~l~f~~~g~~~~~~Vt~~~~~ 641 (667)
-...++ +|||++.|+.++....
T Consensus 51 l~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 51 LQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp -EEEEE--TT-EEEEEEEESS--
T ss_pred eeEEEE-CCCCEEEEEEEECCCC
Confidence 344556 7899999988887654
No 108
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.40 E-value=1.4e+02 Score=28.16 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred eEEEEEEEEecCCCC----eeEEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPN----STYKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~----~tY~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+ +-|+.--.. --|..+.+ |+ .+.| .||+++++++.
T Consensus 42 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 42 RPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 456788999999865 335431111 12555554 32 4667 88999977654
No 109
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.16 E-value=1.7e+02 Score=25.67 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=24.6
Q ss_pred eEEEEEEEEecCCCCee----EEEEEec---------CCceEEEEEcC--EEEEeeCCcEEEEEEE
Q 038474 586 TIKFPRTVTNIGLPNST----YKARILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 636 (667)
Q Consensus 586 ~~~~~rtvtNvg~~~~t----Y~~~v~~---------p~g~~v~v~P~--~l~f~~~g~~~~~~Vt 636 (667)
..+++.+|+|.|+.+-. |+.--.. --|..+.+ |+ .+.| +||+++++++.
T Consensus 18 r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEEE
Confidence 46778889999986522 3321000 12555554 33 4567 88999977654
Done!