BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038476
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HIQ GQCGNQIG+ FWEV+ + P Y G+SDLQLER+ VYYN+A+ + V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 82/108 (75%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
MREI+HI GQCGNQIG+ FWE +C L Y G+ D+Q ER+ VY+N+AS+G+ V
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
PR++ +DLEPGT+DAVR+ G +FRP+N++FGQS AGN WAKGHY E
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTE 108
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 90.1 bits (222), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
MRE + I GQ G QIG+ WE+ C+ + +P IG D + ++++
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHY
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHY 108
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIP---LAGYIGNSDLQLERVTVYYNKASNG 57
MRE++ I GQ G QIG+ WE+ + + P L + E + ++++ G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 58 RSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
+ VPRA+ +DLEP +D VR+GPY +F P + G+ A NN+A+GHY
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHY 109
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 85.1 bits (209), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
REI+ +Q GQCGNQIG FW+ +C + P A + +R V++ +A + +P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQ--SRAGNNWAKG 104
RAVL+DLEP + ++ + PY +++ P N + AGNNWA G
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 85.1 bits (209), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
REI+ +Q GQCGNQIG FW+ +C + P A + +R V++ +A + +P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQ--SRAGNNWAKG 104
RAVL+DLEP + ++ + PY +++ P N + AGNNWA G
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYI--GNSDLQLERVTVYYNKASNGR 58
+REIL I GQCGNQI +FW + L AG + G++ + V+++K +G+
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTE-AGTLKEGSNAAANSNMEVFFHKVRDGK 59
Query: 59 SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
VPRAVL+DLEPG + + G Q+F ++ V A NNWA+G+ +E
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVE 109
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 10 GQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNK---ASNGRSVPRAVLM 66
GQ GNQI ++FW+ VC+ + PL G + +++K +S+G VPRA+++
Sbjct: 12 GQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMV 71
Query: 67 DLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGH 105
DLEP +D V++ G +F P N + AG N+A G+
Sbjct: 72 DLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGY 109
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 34 AGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQM 84
AG+ G+ + R+ V Y +S RA LE G+M V S Y QM
Sbjct: 92 AGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQM 142
>pdb|3DW0|A Chain A, Crystal Structure Of The Class A Carbapenemase Kpc-2 At
1.6 Angstrom Resolution
pdb|3DW0|B Chain B, Crystal Structure Of The Class A Carbapenemase Kpc-2 At
1.6 Angstrom Resolution
Length = 294
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 37 IGNSDLQLERVTVYYNKASNG----RSVPRAVLMDLEPGTMDAVRSGPYGQMF 85
IG++ +L+R + N A G S PRAV L+ T+ + + P Q F
Sbjct: 154 IGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQF 206
>pdb|2OV5|A Chain A, Crystal Structure Of The Kpc-2 Carbapenemase
pdb|2OV5|B Chain B, Crystal Structure Of The Kpc-2 Carbapenemase
pdb|2OV5|C Chain C, Crystal Structure Of The Kpc-2 Carbapenemase
Length = 261
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 37 IGNSDLQLERVTVYYNKASNG----RSVPRAVLMDLEPGTMDAVRSGPYGQMF 85
IG++ +L+R + N A G S PRAV L+ T+ + + P Q F
Sbjct: 125 IGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQF 177
>pdb|3C5A|A Chain A, Crystal Structure Of The C-Terminal Deleted Mutant Of The
Class A Carbapenemase Kpc-2 At 1.23 Angstrom
pdb|3RXW|A Chain A, Kpc-2 Carbapenemase In Complex With Psr3-226
pdb|3RXX|A Chain A, Kpc-2 Carbapenemase In Complex With 3-Npba
Length = 264
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 37 IGNSDLQLERVTVYYNKASNG----RSVPRAVLMDLEPGTMDAVRSGPYGQMF 85
IG++ +L+R + N A G S PRAV L+ T+ + + P Q F
Sbjct: 129 IGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQF 181
>pdb|2ZV3|A Chain A, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|B Chain B, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|C Chain C, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|D Chain D, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|E Chain E, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|F Chain F, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|G Chain G, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|H Chain H, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|I Chain I, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
Length = 115
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 51 YNKASNGRSVPRAVLMD-----LEPGTMDAVRSGP 80
YNKA + +P +++ D LEPGT+ AV GP
Sbjct: 66 YNKARS-EGLPCSIIRDAGHTQLEPGTLTAVAIGP 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,598,961
Number of Sequences: 62578
Number of extensions: 128467
Number of successful extensions: 238
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 31
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)