Query 038476
Match_columns 108
No_of_seqs 107 out of 1060
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 9.1E-51 2E-55 305.6 8.1 108 1-108 1-108 (443)
2 KOG1374 Gamma tubulin [Cytoske 100.0 2.2E-43 4.7E-48 266.1 7.4 107 1-107 2-110 (448)
3 PLN00221 tubulin alpha chain; 100.0 2.5E-42 5.4E-47 269.2 7.0 107 1-107 1-109 (450)
4 PTZ00335 tubulin alpha chain; 100.0 9.1E-42 2E-46 265.9 8.2 107 1-107 1-109 (448)
5 PLN00220 tubulin beta chain; P 100.0 3.4E-41 7.4E-46 262.7 7.6 107 1-107 1-107 (447)
6 PLN00222 tubulin gamma chain; 100.0 1.4E-40 2.9E-45 259.6 8.3 106 1-106 2-109 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 7E-40 1.5E-44 254.3 7.9 105 2-106 1-107 (431)
8 PTZ00387 epsilon tubulin; Prov 100.0 1.5E-39 3.3E-44 254.3 6.9 100 1-107 1-108 (465)
9 PTZ00010 tubulin beta chain; P 100.0 3.3E-39 7.1E-44 251.4 7.8 107 1-107 1-107 (445)
10 cd02186 alpha_tubulin The tubu 100.0 1.1E-38 2.3E-43 247.9 7.5 106 2-107 1-108 (434)
11 cd02187 beta_tubulin The tubul 100.0 3.8E-37 8.2E-42 238.7 8.3 106 2-107 1-106 (425)
12 cd02189 delta_tubulin The tubu 100.0 4.3E-37 9.3E-42 239.6 7.1 101 3-107 1-103 (446)
13 KOG1376 Alpha tubulin [Cytoske 100.0 7.4E-32 1.6E-36 202.8 3.7 107 1-108 1-109 (407)
14 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.2E-31 2.7E-36 191.7 4.5 101 3-107 1-101 (216)
15 cd02190 epsilon_tubulin The tu 100.0 2.7E-31 5.8E-36 203.6 5.1 76 2-107 1-76 (379)
16 cd06059 Tubulin The tubulin su 99.9 4.1E-23 8.9E-28 158.4 5.0 66 3-107 1-66 (382)
17 cd00286 Tubulin_FtsZ Tubulin/F 99.8 2.3E-19 4.9E-24 135.1 4.2 66 3-107 1-66 (328)
18 cd06060 misato Human Misato sh 99.2 2.7E-11 5.9E-16 96.0 6.5 98 2-105 1-123 (493)
19 KOG1375 Beta tubulin [Cytoskel 99.2 2E-11 4.3E-16 92.7 3.0 59 40-107 4-62 (369)
20 PF10644 Misat_Tub_SegII: Misa 99.1 5.2E-11 1.1E-15 78.0 4.2 64 2-71 1-68 (115)
21 smart00864 Tubulin Tubulin/Fts 99.1 1.8E-11 3.9E-16 86.2 0.8 56 49-107 3-58 (192)
22 KOG2530 Members of tubulin/Fts 98.7 1.2E-08 2.7E-13 79.4 2.4 69 1-72 1-73 (483)
23 cd02202 FtsZ_type2 FtsZ is a G 98.1 3.8E-06 8.3E-11 64.3 3.5 69 4-105 3-76 (349)
24 cd02191 FtsZ FtsZ is a GTPase 92.9 0.16 3.4E-06 38.4 3.9 67 3-105 2-68 (303)
25 cd02201 FtsZ_type1 FtsZ is a G 88.6 0.65 1.4E-05 34.9 3.7 67 4-106 3-69 (304)
26 TIGR00065 ftsZ cell division p 86.2 0.96 2.1E-05 34.9 3.5 67 3-105 19-85 (349)
27 PTZ00010 tubulin beta chain; P 79.2 0.51 1.1E-05 37.5 -0.4 66 4-69 135-205 (445)
28 PF02044 Bombesin: Bombesin-li 72.5 1 2.2E-05 18.5 -0.2 9 98-106 1-9 (14)
29 PRK13018 cell division protein 69.5 6.7 0.00014 30.7 3.5 68 3-106 30-97 (378)
30 PF12357 PLD_C: Phospholipase 48.3 19 0.00042 21.8 2.2 17 13-29 17-33 (74)
31 cd02960 AGR Anterior Gradient 46.5 20 0.00043 23.9 2.3 23 56-78 76-98 (130)
32 PF15232 DUF4585: Domain of un 39.7 22 0.00048 21.5 1.6 29 61-89 7-38 (75)
33 PF13156 Mrr_cat_2: Restrictio 37.9 8.9 0.00019 25.6 -0.4 29 42-71 58-86 (129)
34 PF07700 HNOB: Heme NO binding 37.4 40 0.00086 22.9 2.8 27 15-41 16-42 (171)
35 PF13940 Ldr_toxin: Toxin Ldr, 34.8 38 0.00083 17.4 1.7 13 14-26 4-16 (35)
36 cd02186 alpha_tubulin The tubu 29.4 55 0.0012 26.0 2.7 26 4-29 136-161 (434)
37 PF12488 DUF3704: Protein of u 23.8 40 0.00087 16.4 0.7 17 85-101 10-26 (27)
38 COG2077 Tpx Peroxiredoxin [Pos 22.9 73 0.0016 22.0 2.0 48 22-69 91-139 (158)
39 cd08804 Death_ank2 Death domai 22.7 84 0.0018 19.0 2.1 19 13-32 11-29 (84)
40 PLN00221 tubulin alpha chain; 20.6 90 0.0019 25.0 2.4 26 4-29 137-162 (450)
41 PF06368 Met_asp_mut_E: Methyl 20.4 46 0.00099 26.8 0.7 25 4-28 206-234 (441)
42 PF11248 DUF3046: Protein of u 20.3 80 0.0017 18.5 1.6 13 18-30 4-16 (63)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=9.1e-51 Score=305.65 Aligned_cols=108 Identities=53% Similarity=1.039 Sum_probs=105.7
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP 80 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~ 80 (108)
|||||+||+||||||||.+||++||+||||+++|.+.+.++.+.++.++||+|++.++||||||+||+||.||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEeccCCCCcccccccccC
Q 038476 81 YGQMFRPNNFVFGQSRAGNNWAKGHYIE 108 (108)
Q Consensus 81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~~ 108 (108)
+++||+|+|++++|+|||||||+||||+
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtv 108 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTV 108 (443)
T ss_pred cccccChhheeeccccccccccccccch
Confidence 9999999999999999999999999985
No 2
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.2e-43 Score=266.10 Aligned_cols=107 Identities=37% Similarity=0.722 Sum_probs=101.3
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP 80 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~ 80 (108)
|+||||||+||||||||.+||++||.||+|.++|.+....+++.++.++||++.++++|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred CCCCCCCCceEecc--CCCCccccccccc
Q 038476 81 YGQMFRPNNFVFGQ--SRAGNNWAKGHYI 107 (108)
Q Consensus 81 ~~~lf~~~n~i~~~--~gsgnNwa~Gyy~ 107 (108)
++++|+|+|+++.+ .|||||||.||..
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~~ 110 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYSQ 110 (448)
T ss_pred hhcccCccceEEecCCCCccccccccccc
Confidence 99999999999865 6899999999863
No 3
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.5e-42 Score=269.19 Aligned_cols=107 Identities=36% Similarity=0.734 Sum_probs=98.6
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS 78 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~ 78 (108)
|||||+|||||||||||.+||+++++||+++++|.+...+. ...+++++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999997654332 2346789999999999999999999999999999999
Q ss_pred cCCCCCCCCCceEeccCCCCccccccccc
Q 038476 79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
++++++|+|++++++++|||||||+|||+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~ 109 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYT 109 (450)
T ss_pred CccccccCccceeccCCCccccccccccc
Confidence 88889999999999999999999999987
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=9.1e-42 Score=265.91 Aligned_cols=107 Identities=36% Similarity=0.783 Sum_probs=98.7
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS 78 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~ 78 (108)
|||||+||+||||||||.+||+++++||+++++|.+...+. ...+++++||+|+.+++|+|||||||+||++|++|+.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999997754332 2346789999999999999999999999999999999
Q ss_pred cCCCCCCCCCceEeccCCCCccccccccc
Q 038476 79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
++++++|+|+|++++++|||||||+|||+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~ 109 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYT 109 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccc
Confidence 98999999999999999999999999986
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=3.4e-41 Score=262.66 Aligned_cols=107 Identities=79% Similarity=1.350 Sum_probs=100.4
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP 80 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~ 80 (108)
|+|||+||+||||||||.+||+++++||+++++|.++...+.+.+++++||+|.++++|+|||||||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999998766555445678999999999999999999999999999999999
Q ss_pred CCCCCCCCceEeccCCCCccccccccc
Q 038476 81 YGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
++.+|+|++++++++|||||||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~ 107 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYT 107 (447)
T ss_pred cccccCccceEecccCCCCccCceeec
Confidence 999999999999999999999999997
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.4e-40 Score=259.64 Aligned_cols=106 Identities=33% Similarity=0.653 Sum_probs=97.4
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP 80 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~ 80 (108)
|||||+|||||||||||.+||+++++||+++++|.+..+.+.+.++.++||+|+++++|+|||||||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999998755444445778999999999999999999999999999999988
Q ss_pred CCCCCCCCceEeccC--CCCcccccccc
Q 038476 81 YGQMFRPNNFVFGQS--RAGNNWAKGHY 106 (108)
Q Consensus 81 ~~~lf~~~n~i~~~~--gsgnNwa~Gyy 106 (108)
++++|+|+|++++++ |||||||+||+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~ 109 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH 109 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH
Confidence 999999999999996 69999999975
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=7e-40 Score=254.34 Aligned_cols=105 Identities=37% Similarity=0.735 Sum_probs=97.2
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY 81 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~ 81 (108)
||||+|||||||||||.+||+++++||+++++|.+.++++...+++++||+|+++++|+|||||||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 69999999999999999999999999999999987655444457789999999999999999999999999999999888
Q ss_pred CCCCCCCceEeccC--CCCcccccccc
Q 038476 82 GQMFRPNNFVFGQS--RAGNNWAKGHY 106 (108)
Q Consensus 82 ~~lf~~~n~i~~~~--gsgnNwa~Gyy 106 (108)
+++|+|+|++++++ |||||||+||+
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~ 107 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS 107 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH
Confidence 99999999999998 99999999976
No 8
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.5e-39 Score=254.27 Aligned_cols=100 Identities=39% Similarity=0.702 Sum_probs=90.6
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcC-CCCCCceeCCCcccccceeeeEeecC-----CC--CcccceeEecCCCCc
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRV-LIPLAGYIGNSDLQLERVTVYYNKAS-----NG--RSVPRAVLMDLEPGT 72 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~-~~~~g~~~~~~~~~~~~~~~fF~e~~-----~~--~~vpRailiD~ep~~ 72 (108)
|||||+|||||||||||.+||+++++||+ ++++|.+ .+++++||+|.+ .+ +|+|||||||+||+|
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 356789998532 23 499999999999999
Q ss_pred ccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476 73 MDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 73 i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
|++|+.++++++|+|+|++++++|||||||+|||+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~ 108 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHME 108 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCccc
Confidence 99999988999999999999999999999999986
No 9
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=3.3e-39 Score=251.43 Aligned_cols=107 Identities=73% Similarity=1.287 Sum_probs=99.3
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP 80 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~ 80 (108)
|+|||+||+||||||||.+||+++++||+++++|.+....+.+.+++++||+|+.+++|+|||||||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999998765444444678999999999999999999999999999999888
Q ss_pred CCCCCCCCceEeccCCCCccccccccc
Q 038476 81 YGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
++.+|+|++++++++|||||||+|||+
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~ 107 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYT 107 (445)
T ss_pred hhhhcCccceeecccCCccccccchhh
Confidence 888999999999999999999999986
No 10
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.1e-38 Score=247.93 Aligned_cols=106 Identities=37% Similarity=0.750 Sum_probs=97.9
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceecc
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSG 79 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~ 79 (108)
||||+||+||||||||.+||+++++||+++++|.+.+.++ ...+++++||+|+.+++|+|||||||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 6999999999999999999999999999999997755433 34567899999999999999999999999999999988
Q ss_pred CCCCCCCCCceEeccCCCCccccccccc
Q 038476 80 PYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 80 ~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
+++.+|++++++.+++|||||||+|||+
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~ 108 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYT 108 (434)
T ss_pred ccccccCccceeecCCCCCcccccccch
Confidence 8889999999999999999999999986
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.8e-37 Score=238.75 Aligned_cols=106 Identities=71% Similarity=1.259 Sum_probs=97.4
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY 81 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~ 81 (108)
||||+||+||||||||.+||+++++||+++++|.+....+...+.+++||+|+++++|+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 69999999999999999999999999999999877554443346788999999999999999999999999999988888
Q ss_pred CCCCCCCceEeccCCCCccccccccc
Q 038476 82 GQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 82 ~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
+.+|+|++++.+++|||||||+|||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~ 106 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYT 106 (425)
T ss_pred cceecCcceeeccCCCCCccCccchh
Confidence 88999999999999999999999986
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=4.3e-37 Score=239.62 Aligned_cols=101 Identities=29% Similarity=0.589 Sum_probs=91.2
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC-
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY- 81 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~- 81 (108)
.||+|||||||||||.+||++|++||+++++|.+. ...+.+++||.|..+++|+|||||||+||+||++++.++.
T Consensus 1 ~iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~ 76 (446)
T cd02189 1 SVVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSG 76 (446)
T ss_pred CeEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCC
Confidence 38999999999999999999999999999888653 2346779999999999999999999999999999988653
Q ss_pred -CCCCCCCceEeccCCCCccccccccc
Q 038476 82 -GQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 82 -~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
+++|+|++++++++|||||||+|||+
T Consensus 77 ~~~~f~~~~~~~~~~gagnnwa~Gy~~ 103 (446)
T cd02189 77 GTWKYDKKNVICQQSGSGNNWAYGYYV 103 (446)
T ss_pred cccccCchheeecCCCCccchhccccc
Confidence 36899999999999999999999986
No 13
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=99.97 E-value=7.4e-32 Score=202.81 Aligned_cols=107 Identities=38% Similarity=0.775 Sum_probs=100.3
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcc--cccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDL--QLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS 78 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~ 78 (108)
|||||+||+||+|.|||.+.|+++|.||+|+++|..+.+.+. ..+.++.||.++..++++||++|||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998775543 34467899999999999999999999999 999999
Q ss_pred cCCCCCCCCCceEeccCCCCcccccccccC
Q 038476 79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108 (108)
Q Consensus 79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~~ 108 (108)
++|+.+|.|++++.+++.|+||+|+||||+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~ 109 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTI 109 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhc
Confidence 999999999999999999999999999985
No 14
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.97 E-value=1.2e-31 Score=191.69 Aligned_cols=101 Identities=42% Similarity=0.852 Sum_probs=92.2
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
|||+|||||||||||.+||+++++||+++++ .......++.++||+|...++++||+|+||+||++|++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999887 223345567899999999999999999999999999999888777
Q ss_pred CCCCCCceEeccCCCCccccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
.+|++++++.+++|+||||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~ 101 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYT 101 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHH
T ss_pred ccccccccccccccccccccccccc
Confidence 8999999999999999999999973
No 15
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.97 E-value=2.7e-31 Score=203.64 Aligned_cols=76 Identities=43% Similarity=0.785 Sum_probs=73.4
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY 81 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~ 81 (108)
||||+|||||||||||.+||+++++|| |+|||||||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 699999999999999999999999998 78999999999999999999888
Q ss_pred CCCCCCCceEeccCCCCccccccccc
Q 038476 82 GQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 82 ~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
+++|+|+|++.+++|||||||+|||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~ 76 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQ 76 (379)
T ss_pred ccccCcccccccCCCCCCCccceeec
Confidence 99999999999999999999999986
No 16
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.88 E-value=4.1e-23 Score=158.41 Aligned_cols=66 Identities=48% Similarity=1.035 Sum_probs=63.8
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
|||+|||||||||||.+||+++ |+||+||++|+.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999998 9999999999999998888
Q ss_pred CCCCCCceEeccCCCCccccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
.+|++++++.+++|+|||||+|||+
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~ 66 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYT 66 (382)
T ss_pred ccCCcccEEeccccccccccccccc
Confidence 8999999999999999999999986
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.77 E-value=2.3e-19 Score=135.05 Aligned_cols=66 Identities=52% Similarity=0.878 Sum_probs=62.6
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
|||+||+||||||||.+||+++ |+||+||++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999975 9999999999999888888
Q ss_pred CCCCCCceEeccCCCCccccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
.+|++.+.+.+++|||||||+|||+
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~ 66 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHET 66 (328)
T ss_pred cccCccceeecCCCCCCCcceeecc
Confidence 8899999999999999999999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.21 E-value=2.7e-11 Score=95.99 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=67.7
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCCccccee
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPGTMDAVR 77 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~~i~~i~ 77 (108)
|||||||+||+.|.||..||+.....+..++++. ....+.+++|+++. ..+|.||+|++|+....-.--+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999998876665444432 22345689998844 5689999999999875322111
Q ss_pred ccC------------C----CCCCCCCceEec-----cCCCCccccccc
Q 038476 78 SGP------------Y----GQMFRPNNFVFG-----QSRAGNNWAKGH 105 (108)
Q Consensus 78 ~~~------------~----~~lf~~~n~i~~-----~~gsgnNwa~Gy 105 (108)
.+. | +-.|.|+++..- ..+++++|+.|+
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~ 123 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQ 123 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCcccccc
Confidence 111 1 122778877653 346777888775
No 19
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.15 E-value=2e-11 Score=92.67 Aligned_cols=59 Identities=75% Similarity=1.295 Sum_probs=53.4
Q ss_pred CcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476 40 SDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 40 ~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
++.|.++++++|+++..++|+||||++|+||.+++.++++++..+|+|+| +++| +|||+
T Consensus 4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~ 62 (369)
T KOG1375|consen 4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYT 62 (369)
T ss_pred ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------cccee
Confidence 45678999999999999999999999999999999999999999999999 5555 78886
No 20
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.14 E-value=5.2e-11 Score=78.03 Aligned_cols=64 Identities=27% Similarity=0.436 Sum_probs=46.0
Q ss_pred EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCC
Q 038476 2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPG 71 (108)
Q Consensus 2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~ 71 (108)
||||+||+|+.-|.||..||..- |..+..+ ++.....-+.+++|++.. .-.|+||+|++|+-..
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~----~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYD----PDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccC----ccccCcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 79999999999999999999976 4433211 111101124689998853 3589999999997654
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.10 E-value=1.8e-11 Score=86.18 Aligned_cols=56 Identities=38% Similarity=0.638 Sum_probs=50.3
Q ss_pred eeEeecCCCCcccceeEecCCCCcccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476 49 VYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107 (108)
Q Consensus 49 ~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~ 107 (108)
.||.+. ++.||+|++|+||++++.+..++.+.+|++++.+.++.++||||++|||+
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~ 58 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGA 58 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCC
Confidence 567654 78999999999999999998788788899999999999999999999986
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=98.65 E-value=1.2e-08 Score=79.44 Aligned_cols=69 Identities=29% Similarity=0.348 Sum_probs=50.1
Q ss_pred CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCCc
Q 038476 1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPGT 72 (108)
Q Consensus 1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~~ 72 (108)
||||+|||||+..|-+|..||.+-..-.+..++..-+.. ...-+ +++++... ...|+||.|++|+....
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~--~~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~ 73 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG--ELCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGEL 73 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh--hcCcc-hhhhhccccccCceeeccceeEEecCccc
Confidence 999999999999999999999998666666554322111 11112 67887643 34799999999987654
No 23
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.05 E-value=3.8e-06 Score=64.32 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=53.4
Q ss_pred EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476 4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ 83 (108)
Q Consensus 4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~ 83 (108)
|..|-+|+||+.|-..+.+.= +. ...+|+||+|+||+|+..++.++.
T Consensus 3 i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~----- 49 (349)
T cd02202 3 VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH----- 49 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc-----
Confidence 889999999999988775521 10 113578999999999999998754
Q ss_pred CCCCCceEeccC-----CCCccccccc
Q 038476 84 MFRPNNFVFGQS-----RAGNNWAKGH 105 (108)
Q Consensus 84 lf~~~n~i~~~~-----gsgnNwa~Gy 105 (108)
...|++++.+++ |+|+||..|.
T Consensus 50 ~~~~~ki~~g~~~t~G~GaG~~~~~G~ 76 (349)
T cd02202 50 IPAEDRILIGQSEVKGHGVGADRELGA 76 (349)
T ss_pred CCCCCEEEecCcccCCCCCCCChHHHH
Confidence 346788888874 8999999885
No 24
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.92 E-value=0.16 Score=38.39 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=43.0
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
-|..|-+|+||+.+-..+.+. ++ . -.+.+.||+|.+.++.+.. +.+
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a-~~k 47 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEA-ENR 47 (303)
T ss_pred EEEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCC-CcE
Confidence 378899999999998777641 11 0 0367889999888876542 111
Q ss_pred CCCCCCceEeccCCCCccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGH 105 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gy 105 (108)
=++-++ .+...|||+||+.|+
T Consensus 48 i~iG~~--~t~g~GaG~~~~~G~ 68 (303)
T cd02191 48 VLIGQA--RTKGLGAGANPELGA 68 (303)
T ss_pred EecCCc--cccCCCCCCCHHHHH
Confidence 112111 123469999999885
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=88.57 E-value=0.65 Score=34.88 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=42.5
Q ss_pred EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476 4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ 83 (108)
Q Consensus 4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~ 83 (108)
|..|-||+||+.+=..+++. ++ . -...+.+|+|.+.++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 67899999999997776541 10 0 0356788888877776542 1121
Q ss_pred CCCCCceEeccCCCCcccccccc
Q 038476 84 MFRPNNFVFGQSRAGNNWAKGHY 106 (108)
Q Consensus 84 lf~~~n~i~~~~gsgnNwa~Gyy 106 (108)
++-++ .+.-.|+|+||+.|+.
T Consensus 49 ~ig~~--~t~g~Gag~~~~~g~~ 69 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEVGRK 69 (304)
T ss_pred EcCCC--CCCCCCCCCCHHHHHH
Confidence 22222 1334689999999863
No 26
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=86.19 E-value=0.96 Score=34.88 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=41.2
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
-|..|-||+||+.+-..+.+. ++ .-...+.+|+|.+.++.+... .+
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a~-~k 64 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKAD-KK 64 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCCC-eE
Confidence 378899999999998776553 10 014567788887776655421 11
Q ss_pred CCCCCCceEeccCCCCccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGH 105 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gy 105 (108)
-++.++ .+.-.|+|+||+.|.
T Consensus 65 i~iG~~--~t~G~GaG~~~~~G~ 85 (349)
T TIGR00065 65 ILIGKK--LTRGLGAGGNPEIGR 85 (349)
T ss_pred EEcCCC--CCCCCCCCCCHHHHH
Confidence 112111 122358999999885
No 27
>PTZ00010 tubulin beta chain; Provisional
Probab=79.18 E-value=0.51 Score=37.45 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=41.0
Q ss_pred EEEEecCchHHHHHHHHHHHHHhhcCC---CCCCceeCC--CcccccceeeeEeecCCCCcccceeEecCC
Q 038476 4 ILHIQGGQCGNQIGSNFWEVVCVNRVL---IPLAGYIGN--SDLQLERVTVYYNKASNGRSVPRAVLMDLE 69 (108)
Q Consensus 4 ii~lqvGQcGnqiG~~fw~~l~~eh~~---~~~g~~~~~--~~~~~~~~~~fF~e~~~~~~vpRailiD~e 69 (108)
+++--.|++|..+|..+|+.|.+|+.- ..-+.++.. ++...+..|+.+....-..+..+.+++|-|
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~ 205 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNE 205 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccH
Confidence 667778999999999999999999851 111333321 112223345555444444556677777755
No 28
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=72.48 E-value=1 Score=18.54 Aligned_cols=9 Identities=56% Similarity=1.442 Sum_probs=5.9
Q ss_pred Ccccccccc
Q 038476 98 GNNWAKGHY 106 (108)
Q Consensus 98 gnNwa~Gyy 106 (108)
|+-||.|++
T Consensus 1 g~~WAvGh~ 9 (14)
T PF02044_consen 1 GPQWAVGHF 9 (14)
T ss_dssp --TCHHHCT
T ss_pred CCccceeee
Confidence 577999975
No 29
>PRK13018 cell division protein FtsZ; Provisional
Probab=69.47 E-value=6.7 Score=30.72 Aligned_cols=68 Identities=13% Similarity=0.285 Sum_probs=41.4
Q ss_pred eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476 3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG 82 (108)
Q Consensus 3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~ 82 (108)
-|..|-||+||+.+=..+++. ++ .+ ...|.|++|.+.++.+... .+
T Consensus 30 ~I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a~-~k 75 (378)
T PRK13018 30 KIVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKAD-KK 75 (378)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCCC-cE
Confidence 377899999999987776531 11 00 3567888888766655321 11
Q ss_pred CCCCCCceEeccCCCCcccccccc
Q 038476 83 QMFRPNNFVFGQSRAGNNWAKGHY 106 (108)
Q Consensus 83 ~lf~~~n~i~~~~gsgnNwa~Gyy 106 (108)
-++-++ ++.-.|||++|..|+.
T Consensus 76 i~iG~~--~t~G~GaG~dp~~G~~ 97 (378)
T PRK13018 76 ILIGKS--LTRGLGAGGDPEVGRK 97 (378)
T ss_pred EecCCc--cCCCCCCCCChHHHHH
Confidence 111111 2234689999999874
No 30
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=48.33 E-value=19 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhcC
Q 038476 13 GNQIGSNFWEVVCVNRV 29 (108)
Q Consensus 13 GnqiG~~fw~~l~~eh~ 29 (108)
=|+||.+.|++++.|--
T Consensus 17 Vn~iae~nW~~y~~ee~ 33 (74)
T PF12357_consen 17 VNEIAEENWKQYASEEV 33 (74)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 48999999999988754
No 31
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=46.49 E-value=20 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.5
Q ss_pred CCCcccceeEecCCCCcccceec
Q 038476 56 NGRSVPRAVLMDLEPGTMDAVRS 78 (108)
Q Consensus 56 ~~~~vpRailiD~ep~~i~~i~~ 78 (108)
.+.++||.+|+|-+.+++..+..
T Consensus 76 ~g~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 76 DGQYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred cCcccCeEEEECCCCCCcccccc
Confidence 55789999999999998888843
No 32
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=39.72 E-value=22 Score=21.54 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=14.4
Q ss_pred cceeEecCCCC---cccceeccCCCCCCCCCc
Q 038476 61 PRAVLMDLEPG---TMDAVRSGPYGQMFRPNN 89 (108)
Q Consensus 61 pRailiD~ep~---~i~~i~~~~~~~lf~~~n 89 (108)
+|-+|+|-|.. +++.=++-..+.||||+.
T Consensus 7 qrKvL~DP~SG~Yy~vd~P~Qp~~k~lfDPET 38 (75)
T PF15232_consen 7 QRKVLQDPESGQYYVVDAPVQPKTKTLFDPET 38 (75)
T ss_pred CccEeecCCCCCEEEEecCCCcceeeeecCCC
Confidence 45555555544 333323334556677663
No 33
>PF13156 Mrr_cat_2: Restriction endonuclease
Probab=37.86 E-value=8.9 Score=25.60 Aligned_cols=29 Identities=10% Similarity=0.326 Sum_probs=19.9
Q ss_pred ccccceeeeEeecCCCCcccceeEecCCCC
Q 038476 42 LQLERVTVYYNKASNGRSVPRAVLMDLEPG 71 (108)
Q Consensus 42 ~~~~~~~~fF~e~~~~~~vpRailiD~ep~ 71 (108)
.+...+++||.+++...|. +.|+|++-.+
T Consensus 58 I~k~didSF~s~sgk~~f~-~rliisTt~~ 86 (129)
T PF13156_consen 58 IQKSDIDSFFSASGKSRFS-RRLIISTTDK 86 (129)
T ss_pred EcHHHhhHHHHhcCCcccc-CcEEEEcCcH
Confidence 3445689999988776665 4577776543
No 34
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=37.36 E-value=40 Score=22.93 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeCCCc
Q 038476 15 QIGSNFWEVVCVNRVLIPLAGYIGNSD 41 (108)
Q Consensus 15 qiG~~fw~~l~~eh~~~~~g~~~~~~~ 41 (108)
.-|.+.|+.+.++.++++++.+.....
T Consensus 16 ~~G~~~w~~i~~~~~~~~~~~f~~~~~ 42 (171)
T PF07700_consen 16 KYGEEVWDEILERAGLDSDGIFTSHGN 42 (171)
T ss_dssp HHHHHHHHHHHHHTTSSTTSS--TTSB
T ss_pred HcCHHHHHHHHHHhCCCcCCccccccc
Confidence 358899999999999987666655443
No 35
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=34.75 E-value=38 Score=17.36 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHh
Q 038476 14 NQIGSNFWEVVCV 26 (108)
Q Consensus 14 nqiG~~fw~~l~~ 26 (108)
.|+|-.||.-|+.
T Consensus 4 aqlg~~~WhDLAA 16 (35)
T PF13940_consen 4 AQLGIAFWHDLAA 16 (35)
T ss_pred HHHHHHHHHHhHh
Confidence 4899999998764
No 36
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=29.40 E-value=55 Score=25.96 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.1
Q ss_pred EEEEecCchHHHHHHHHHHHHHhhcC
Q 038476 4 ILHIQGGQCGNQIGSNFWEVVCVNRV 29 (108)
Q Consensus 4 ii~lqvGQcGnqiG~~fw~~l~~eh~ 29 (108)
+++--.|++|..+|..+++.|.+|+.
T Consensus 136 i~~sl~GGTGSGlgs~l~e~l~d~y~ 161 (434)
T cd02186 136 IFHSFGGGTGSGFGSLLLERLSVDYG 161 (434)
T ss_pred EEeccCCCcchhHHHHHHHHHHHhcC
Confidence 56667789999999999999999986
No 37
>PF12488 DUF3704: Protein of unknown function (DUF3704) ; InterPro: IPR022173 This domain family is found in eukaryotes, and is approximately 30 amino acids in length.
Probab=23.83 E-value=40 Score=16.38 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=13.0
Q ss_pred CCCCceEeccCCCCccc
Q 038476 85 FRPNNFVFGQSRAGNNW 101 (108)
Q Consensus 85 f~~~n~i~~~~gsgnNw 101 (108)
|.|.+-|.+..+++.||
T Consensus 10 yMp~s~iagss~s~~s~ 26 (27)
T PF12488_consen 10 YMPRSGIAGSSGSTMSN 26 (27)
T ss_pred eeeecceeecccccccc
Confidence 67777788877777776
No 38
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=73 Score=22.05 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=24.8
Q ss_pred HHHHhhcCCCCCCceeCCCcc-cccceeeeEeecCCCCcccceeEecCC
Q 038476 22 EVVCVNRVLIPLAGYIGNSDL-QLERVTVYYNKASNGRSVPRAVLMDLE 69 (108)
Q Consensus 22 ~~l~~eh~~~~~g~~~~~~~~-~~~~~~~fF~e~~~~~~vpRailiD~e 69 (108)
..+|..|||++=-..+...+. ..++..+...|..-..+.+|||+|=-|
T Consensus 91 ~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De 139 (158)
T COG2077 91 KRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDE 139 (158)
T ss_pred hhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcC
Confidence 356666776542122111111 224455666665444578999987433
No 39
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=22.70 E-value=84 Score=19.02 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 038476 13 GNQIGSNFWEVVCVNRVLIP 32 (108)
Q Consensus 13 GnqiG~~fw~~l~~eh~~~~ 32 (108)
-+.+|.. |..++++.|+..
T Consensus 11 a~~LG~d-Wk~LAr~Lg~se 29 (84)
T cd08804 11 ADHLGFS-WTELARELDFTE 29 (84)
T ss_pred HHHHhhh-HHHHHHHcCCCH
Confidence 4789999 999999988653
No 40
>PLN00221 tubulin alpha chain; Provisional
Probab=20.60 E-value=90 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred EEEEecCchHHHHHHHHHHHHHhhcC
Q 038476 4 ILHIQGGQCGNQIGSNFWEVVCVNRV 29 (108)
Q Consensus 4 ii~lqvGQcGnqiG~~fw~~l~~eh~ 29 (108)
+++--.|++|..+|..+|+.|.+|+.
T Consensus 137 i~~Sl~GGtGSGlgs~~le~l~d~y~ 162 (450)
T PLN00221 137 VFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
T ss_pred EeeccCCCccchHHHHHHHHHHHhcc
Confidence 56666789999999999999999985
No 41
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=20.43 E-value=46 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=14.7
Q ss_pred EEEEecCchHHHHHH----HHHHHHHhhc
Q 038476 4 ILHIQGGQCGNQIGS----NFWEVVCVNR 28 (108)
Q Consensus 4 ii~lqvGQcGnqiG~----~fw~~l~~eh 28 (108)
.|+|..|||||.+-+ .-.+.|+.|+
T Consensus 206 siSv~Y~Q~gn~~QDiaAi~aLr~L~~ey 234 (441)
T PF06368_consen 206 SISVGYAQQGNLIQDIAAIRALRELAAEY 234 (441)
T ss_dssp EEEEEEE--S-HHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCChHHHHHHHHHHHHHHHHH
Confidence 489999999998753 3345555554
No 42
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.27 E-value=80 Score=18.46 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcCC
Q 038476 18 SNFWEVVCVNRVL 30 (108)
Q Consensus 18 ~~fw~~l~~eh~~ 30 (108)
.+||+++.+|.|-
T Consensus 4 teFw~~~~~~FG~ 16 (63)
T PF11248_consen 4 TEFWQLMEEEFGP 16 (63)
T ss_pred HHHHHHHHHHhCc
Confidence 4899999888763
Done!