BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038478
         (228 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
          Length = 323

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 53  IFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARK 112
           IFVPVN    HWYL +I  P +   +++  P T++ +    +++   +++D  L   +  
Sbjct: 124 IFVPVNES-SHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTL 182

Query: 113 VLAA 116
            L+A
Sbjct: 183 SLSA 186


>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
 pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
          Length = 298

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 94  EAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPES-YNYGVLILLMMQRGG 152
           E K I+R L+K LN +    +   T FE      +  +  +P +  ++     +     G
Sbjct: 206 EIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAG 265

Query: 153 KW------LQNPTFQCDFDTERSQLVLQLLTSI 179
            W       QN  F   ++TE S+  LQ  T I
Sbjct: 266 DWKNYFTVAQNEKFDAIYETEMSKTALQFRTEI 298


>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
           Sult1b1 In Complex With Pap And Resveratrol
 pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
           Sult1b1 In Complex With Pap And Resveratrol
          Length = 298

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 94  EAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPES-YNYGVLILLMMQRGG 152
           E K I+R L+K LN +    +   T FE      +  +  +P +  ++     +     G
Sbjct: 206 EIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPFMRKGTAG 265

Query: 153 KW------LQNPTFQCDFDTERSQLVLQLLTSI 179
            W       QN  F   ++TE S+  LQ  T I
Sbjct: 266 DWKNYFTVAQNEKFDAIYETEMSKTALQFRTEI 298


>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
           Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
          Length = 339

 Score = 26.9 bits (58), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 188 MEKSRDYNMANKITSELMCAAVENKYLKNLRKSRKMGHGR 227
           +E+ +D+N+ +++  +  CA +E K+ K L ++    HG+
Sbjct: 85  LEQLKDFNVKDRVGIDYRCAIIEEKH-KQLDRTNGYLHGK 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,234,311
Number of Sequences: 62578
Number of extensions: 228796
Number of successful extensions: 629
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 6
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)