BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038478
         (228 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1
          Length = 1047

 Score = 38.9 bits (89), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 53  IFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARK 112
           IFVPVN    HWYL +I  P +   +++  P T+       E+    R++D  L+  +  
Sbjct: 848 IFVPVNES-SHWYLAVICFPWLEEVVYEDFPQTIPQYSQAEESHHDSRTIDNDLHTSS-- 904

Query: 113 VLAAGTKFEHFTVLQVT 129
            L++GT+      + VT
Sbjct: 905 ALSSGTEDSQSPEMNVT 921


>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
          Length = 1132

 Score = 37.7 bits (86), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 32  TLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNP 83
           T H D+  +DF          IFVP+N    HW+L ++  P +    ++PNP
Sbjct: 765 TRHVDIFEKDF----------IFVPLNEA-AHWFLAVVCFPGLEKPKYEPNP 805


>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
          Length = 1112

 Score = 37.7 bits (86), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 32  TLHEDVVMRDFYMKDVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNP 83
           T H D+  +DF          IFVP+N    HW+L ++  P +    ++PNP
Sbjct: 745 TRHVDIFEKDF----------IFVPLNEA-AHWFLAVVCFPGLEKPKYEPNP 785


>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1
          Length = 1037

 Score = 35.8 bits (81), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 53  IFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLD 103
           IFVPVN    HWYL +I  P +   +++  P T++ +  + +++   +++D
Sbjct: 838 IFVPVNES-SHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTID 887


>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4
          Length = 1050

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 53  IFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTL 86
           IFVPVN    HWYL +I  P +   +++  P T+
Sbjct: 851 IFVPVNES-SHWYLAVICFPWLEEAVYEDFPQTV 883


>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1
          Length = 1037

 Score = 32.7 bits (73), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 53  IFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTL 86
           IFVPVN    HWYL +I  P +   +++  P T+
Sbjct: 838 IFVPVNES-SHWYLAVICFPWLEEAVYEDCPQTV 870


>sp|Q822R2|DNLJ_CHLCV DNA ligase OS=Chlamydophila caviae (strain GPIC) GN=ligA PE=3 SV=1
          Length = 662

 Score = 32.3 bits (72), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 8   NLLATVCGVEKLQERVLRNACDIDTLHEDVVMRDFYMKDVGKCAKIF 54
           N L +   +EK++  V R A DID L E V+ + F +  + +C  IF
Sbjct: 424 NPLCSAGAIEKIRFFVGRGALDIDHLGEKVITKLFDLGVIHRCCDIF 470


>sp|Q3AA24|MNMA_CARHZ tRNA-specific 2-thiouridylase MnmA OS=Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008) GN=mnmA PE=3
           SV=1
          Length = 365

 Score = 31.2 bits (69), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 171 LVLQLLTSIVNSIKEKVMEKSRDYNM--ANKITSELMCAAVENKYLKNLRKSR 221
           ++ +LL  +    KE+V E +R YN+  A+K  S+ +C   +N Y K L++ R
Sbjct: 169 MLRRLLLPLGEYTKEQVRELARKYNLVTADKPESQEICFVPDNDYRKFLKERR 221


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,417,537
Number of Sequences: 539616
Number of extensions: 2909728
Number of successful extensions: 9575
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9574
Number of HSP's gapped (non-prelim): 13
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)