Query 038478
Match_columns 228
No_of_seqs 105 out of 141
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bkr_A Sentrin-specific protea 100.0 9.3E-32 3.2E-36 227.5 10.3 150 16-195 36-210 (212)
2 2xph_A Sentrin-specific protea 100.0 1.2E-29 4.1E-34 218.9 12.9 141 16-176 69-228 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 2.9E-29 9.9E-34 214.7 14.2 141 16-176 57-216 (226)
4 2oix_A Xanthomonas outer prote 100.0 1.1E-30 3.6E-35 219.4 4.9 146 16-194 14-181 (186)
5 3eay_A Sentrin-specific protea 100.0 2.2E-28 7.5E-33 223.4 10.8 140 46-203 117-322 (323)
6 1euv_A ULP1 protease; SUMO hyd 99.9 8.7E-28 3E-32 205.3 12.8 119 46-191 97-215 (221)
7 4ekf_A Adenain; alpha and beta 96.8 0.0069 2.4E-07 52.3 9.5 89 59-158 50-140 (204)
8 2cqn_A Formin-binding protein 21.4 1E+02 0.0036 22.0 3.9 40 188-227 36-75 (77)
9 2kwp_A Transcription elongatio 20.5 89 0.0031 24.4 3.7 37 184-220 2-38 (129)
10 1p22_C Beta-catenin, Pro2286; 20.0 19 0.00066 21.7 -0.2 11 134-144 8-19 (26)
No 1
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.97 E-value=9.3e-32 Score=227.47 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=115.1
Q ss_pred hHhhhHHHhhccccccchhhhhhhh---hhhcc---------------cccccceEEEeeeC------CCcceeeeEeee
Q 038478 16 VEKLQERVLRNACDIDTLHEDVVMR---DFYMK---------------DVGKCAKIFVPVNH------GFCHWYLLIIFI 71 (228)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~---------------DLfscdkIFVPVN~------ggsHWsL~VId~ 71 (228)
++.|+++..+++ -.++| +|+ ++|++ |++++|+||||||. ||+||+|+||++
T Consensus 36 ~~~L~~~~~~~~--~~~~~---~~~p~~s~f~~~~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~ 110 (212)
T 2bkr_A 36 FEYFANSQFHDS--SDHVS---FISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQ 110 (212)
T ss_dssp HHHHHHTTTGGG--TTTEE---EECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEG
T ss_pred HHHHHHhhccCC--CCcEE---EEChHHHHHHHhCCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEe
Confidence 567777776554 24566 666 55553 79999999999995 689999999999
Q ss_pred CCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHh
Q 038478 72 PEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRG 151 (228)
Q Consensus 72 keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~ 151 (228)
++++|.||||++++|.. .+++++..|..|++.+.. .+ .| ...++|||+||||||||||+||+.+
T Consensus 111 ~~~~i~~~DSl~~~n~~-----~~~~l~~~l~~~l~~~~~-----~~---~~---~~~~~PqQ~N~~DCGvfvl~~~~~l 174 (212)
T 2bkr_A 111 DKNSFFHYDSHSRSNSV-----HAKQVAEKLEAFLGRKGD-----KL---AF---VEEKAPAQQNSYDCGMYVICNTEAL 174 (212)
T ss_dssp GGTEEEEECSSTTTTHH-----HHHHHHHHHHHHHSCTTC-----CC---CE---EECCCCCCSSSSTHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHH-----HHHHHHHHHHHHhCCccc-----cc---eE---eECCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999999987653 366778888888865321 11 12 2358999999999999999999999
Q ss_pred ccccCCCCcccCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 038478 152 GKWLQNPTFQCDFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDYN 195 (228)
Q Consensus 152 ~~w~~~p~f~~~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l~ 195 (228)
+++..... . .+ ...++ +..+..+|.+++++|.+|.
T Consensus 175 ~~~~~~~~----~----~~-~~~~~~~~~i~~~R~~i~~lI~~L~ 210 (212)
T 2bkr_A 175 CQNFFRQQ----T----ES-LLQLLTPAYITKKRGEWKDLIATLA 210 (212)
T ss_dssp HHHHHSCC----C----CC-HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcC----c----cc-ccccCCHHHHHHHHHHHHHHHHHHh
Confidence 88553321 1 11 45666 7899999999999999985
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.96 E-value=1.2e-29 Score=218.92 Aligned_cols=141 Identities=15% Similarity=0.241 Sum_probs=105.3
Q ss_pred hHhhhHHHhhccccccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEE
Q 038478 16 VEKLQERVLRNACDIDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEI 78 (228)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~y 78 (228)
++.|++|.-++ +...+| +|+++|+. +|+++|+||||||. ++||+|+|||+++++|.|
T Consensus 69 ~~~L~~~~~~~--~~~~~~---~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~ 142 (238)
T 2xph_A 69 MNMLMERSKEK--GLPSVH---AFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITY 142 (238)
T ss_dssp HHHHHHHTTST--TSCCEE---ECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEE
T ss_pred HHHHHHhhhhc--CCCcee---eeecHHHHHhhhcccHHHHHHhccCCcccCCEEEEcccC-CCceEEEEEEcccceEEE
Confidence 46777775432 355677 77887762 78999999999996 599999999999999999
Q ss_pred EcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeec--cCCcCCCCCCCCchHHHHHHHHHHhccccC
Q 038478 79 WDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVL--QVTEFAVIPESYNYGVLILLMMQRGGKWLQ 156 (228)
Q Consensus 79 yDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~--~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~ 156 (228)
|||+++.+.. ....|..|+..+...+.+...+.++|.+. ...++|||.||||||||||+||+.+++ .
T Consensus 143 ~DSl~~~~~~---------~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~--~ 211 (238)
T 2xph_A 143 YDSMGGINNE---------ACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITK--D 211 (238)
T ss_dssp ECTTCCCCHH---------HHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHT--T
T ss_pred eecccCCCHH---------HHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhc--C
Confidence 9999987642 23344556666665555556667778753 356899999999999999999999987 3
Q ss_pred CCCcccCcchhHHHHHHHHH
Q 038478 157 NPTFQCDFDTERSQLVLQLL 176 (228)
Q Consensus 157 ~p~f~~~~~~~~~~~v~~~v 176 (228)
.| .+|++..+...++.+
T Consensus 212 ~~---~~f~q~dm~~~R~~m 228 (238)
T 2xph_A 212 RP---INFTQQHMPYFRKRM 228 (238)
T ss_dssp CC---CCCCGGGHHHHHHHH
T ss_pred CC---CCcChhhHHHHHHHH
Confidence 33 466776665544433
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.96 E-value=2.9e-29 Score=214.69 Aligned_cols=141 Identities=17% Similarity=0.247 Sum_probs=105.9
Q ss_pred hHhhhHHHhhccccccchhhhhhhhhhhcc-----------------cccccceEEEeeeCCCcceeeeEeeeCCCeEEE
Q 038478 16 VEKLQERVLRNACDIDTLHEDVVMRDFYMK-----------------DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEI 78 (228)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------DLfscdkIFVPVN~ggsHWsL~VId~keK~f~y 78 (228)
++.|+||.-++ ...++| +|+++|+. +|+++|+||||||. ++||+|+|||+++++|.|
T Consensus 57 ~~~L~~~~~~~--~~~~~~---~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~ 130 (226)
T 1th0_A 57 MNLLVERNKKQ--GYPALH---VFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKY 130 (226)
T ss_dssp HHHHHHHHHHH--TCCCEE---ECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEE
T ss_pred HHHHHHhhhhc--cCCcEE---EEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEE
Confidence 46777776543 234566 66666652 89999999999996 599999999999999999
Q ss_pred EcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeecc--CCcCCCCCCCCchHHHHHHHHHHhccccC
Q 038478 79 WDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQ--VTEFAVIPESYNYGVLILLMMQRGGKWLQ 156 (228)
Q Consensus 79 yDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~--~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~ 156 (228)
|||+++.+.. +...|..|+..+.+.+.+...+.++|.+.. ..++|||.||||||||||+||+.+++ +
T Consensus 131 ~DSl~~~~~~---------~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~--~ 199 (226)
T 1th0_A 131 LDSMGQKGHR---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISR--D 199 (226)
T ss_dssp ECTTCCCCHH---------HHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTT--T
T ss_pred EcCCCCCchH---------HHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhC--C
Confidence 9999987532 345556677777666555566677787542 46899999999999999999999977 3
Q ss_pred CCCcccCcchhHHHHHHHHH
Q 038478 157 NPTFQCDFDTERSQLVLQLL 176 (228)
Q Consensus 157 ~p~f~~~~~~~~~~~v~~~v 176 (228)
.| .+|++..+...++.+
T Consensus 200 ~~---~~f~q~dm~~~R~~~ 216 (226)
T 1th0_A 200 KP---ITFTQHQMPLFRKKM 216 (226)
T ss_dssp CC---CCCCGGGHHHHHHHH
T ss_pred CC---CccChhhHHHHHHHH
Confidence 44 466776665555443
No 4
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.96 E-value=1.1e-30 Score=219.38 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=103.0
Q ss_pred hHhhhHHHhhccccccchhhhhhhh---hhhcc--------------cccc-cceEEEeeeCCCcceeeeEeeeCCCeE-
Q 038478 16 VEKLQERVLRNACDIDTLHEDVVMR---DFYMK--------------DVGK-CAKIFVPVNHGFCHWYLLIIFIPEMRA- 76 (228)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~--------------DLfs-cdkIFVPVN~ggsHWsL~VId~keK~f- 76 (228)
++.|++|..+++.. ++.| +|+ +++++ +.++ +|+||||||.+|+||||+|||+++++|
T Consensus 14 ~~~L~~~~~~~~~~-~~v~---f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~iPin~~~~HWsLlvi~~~~~~~~ 89 (186)
T 2oix_A 14 TDDLARRLRGEPNA-HLLH---FADSQVVTMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAV 89 (186)
T ss_dssp HHHHHHHTTTSTTG-GGEE---ECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSEEEEEEEETTTEEEEEEEECSSTTSC
T ss_pred HHHHHHHhhhccCc-ceEE---EECHHHHHHHHhCCHHHHHHHHHHcccccccCEEEEEEeCCCCccEEEEEECCCCeee
Confidence 57788887665541 2345 444 33333 2344 999999999988999999999999999
Q ss_pred --EEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceeeccCCcCCCCCCCCchHHHHHHHHHHhccc
Q 038478 77 --EIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTVLQVTEFAVIPESYNYGVLILLMMQRGGKW 154 (228)
Q Consensus 77 --~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w 154 (228)
+||||+++.+. .+.+++..|..+++.+. ..+ ...++|||+||||||||||+||+.+++|
T Consensus 90 ~~~~~DSl~~~~~------~~~~l~~~l~~~l~~~~----------~~~---~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~ 150 (186)
T 2oix_A 90 AAYHYDSMAQKDP------QQRYLADMAAYHLGLDY----------QQT---HEMPIAIQSDGYSAGDHVLTGIEVLAHR 150 (186)
T ss_dssp EEEEECCCSSCCH------HHHHHHHHHHHHTTCCG----------GGC---EEECBCCCC--CCHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCCCCCH------HHHHHHHHHHHHhCCCc----------ccc---ccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999998542 25667777777775421 112 2357999999999999999999999987
Q ss_pred cCCCCcccCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 038478 155 LQNPTFQCDFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDY 194 (228)
Q Consensus 155 ~~~p~f~~~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l 194 (228)
.....+ .++ .++ ++.+..+|.+++++|+++
T Consensus 151 ~~~~~~-~~~---------~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 151 VLDGTF-DYA---------GGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHTCT-TST---------TTTCBTTCCCCHHHHHHHHHCC
T ss_pred HhhcCc-cCC---------CcCCHHHHHHHHHHHHHHHHhc
Confidence 532111 111 123 556788999999999876
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=223.41 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=106.8
Q ss_pred cccccceEEEeeeCCCcceeeeEeeeCCC---------------------------------------------------
Q 038478 46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEM--------------------------------------------------- 74 (228)
Q Consensus 46 DLfscdkIFVPVN~ggsHWsL~VId~keK--------------------------------------------------- 74 (228)
|||++|+||||||. ++||+|+||+++.+
T Consensus 117 dlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
T 3eay_A 117 NIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESN 195 (323)
T ss_dssp CGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC---------------------------------------------
T ss_pred ccccCCEEEEecCC-CCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999996 59999999999853
Q ss_pred -----------eEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcC--CcccceeeccCCcCCCCCCCCchH
Q 038478 75 -----------RAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAG--TKFEHFTVLQVTEFAVIPESYNYG 141 (228)
Q Consensus 75 -----------~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~--~d~~~f~v~~~~~iPqQ~NGyDCG 141 (228)
.|.|||||+++. -.+++..|..|+.+|.+.+.... ++.+.|.. ..+.+|||.||||||
T Consensus 196 ~~~~~~~~k~pcIl~lDSL~~~~--------~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~-~~~~~P~Q~N~~DCG 266 (323)
T 3eay_A 196 MSVPKKMCKRPCILILDSLKAAS--------VQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVD-LCPKVPKQDNSSDCG 266 (323)
T ss_dssp ----CCCCBCSEEEEECSSCCSS--------HHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCE-ECCBCCCCCSTTCHH
T ss_pred cccccccCCCCeEEEEECCCCCC--------cchHHHHHHHHHHHHHHhhcCCCcCCCHhHcee-ccCCCCCcCCCCcHH
Confidence 589999999953 24467788889999887765433 33345542 346799999999999
Q ss_pred HHHHHHHHHhccccCCCCccc-CcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccchH
Q 038478 142 VLILLMMQRGGKWLQNPTFQC-DFDTERSQLVLQLL-TSIVNSIKEKVMEKSRDYNMANKITSE 203 (228)
Q Consensus 142 VFVlk~ae~~~~w~~~p~f~~-~~~~~~~~~v~~~v-~~~V~~mr~evl~~i~~l~~~~~~~~~ 203 (228)
||||+||+.++++... +|.. .+. ..+. +..|..+|+||+.+|..|..+....|+
T Consensus 267 vfvl~~~e~~~~~~~~-~f~~~~~~-------~~wf~~~~i~~kR~ei~~LI~~L~~~q~~~~~ 322 (323)
T 3eay_A 267 VYLLQYVESFFKDPIV-NFELPIHL-------EKWFPRHVIKTKREDIRELILKLHLQQQKGSS 322 (323)
T ss_dssp HHHHHHHHHHHHSCCC-CCCSSCBC-------TTSSCHHHHHTHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCcc-cccccccc-------ccCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999884432 2211 111 3455 899999999999999999887654443
No 6
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.95 E-value=8.7e-28 Score=205.25 Aligned_cols=119 Identities=20% Similarity=0.335 Sum_probs=90.8
Q ss_pred cccccceEEEeeeCCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHHHHHHHHhhhhhhhhhcCCcccceee
Q 038478 46 DVGKCAKIFVPVNHGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILRSLDKILNGDARKVLAAGTKFEHFTV 125 (228)
Q Consensus 46 DLfscdkIFVPVN~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~~L~~yl~de~kkk~~~~~d~~~f~v 125 (228)
|++++|+||||||.+++||+|+|||+++++|.||||+++++... ..+++..|..|+.++.+++.+..+++
T Consensus 97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~~~l~~~l~~e~~~~~~~~~~~----- 166 (221)
T 1euv_A 97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----SFAILTDLQKYVMEESKHTIGEDFDL----- 166 (221)
T ss_dssp CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----HHHHHHHHHHHHHHHTTSSSCTTCEE-----
T ss_pred CcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcch-----HHHHHHHHHHHHHHHHHHhcCCCceE-----
Confidence 78999999999998789999999999999999999998754321 33567778888887766554444432
Q ss_pred ccCCcCCCCCCCCchHHHHHHHHHHhccccCCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038478 126 LQVTEFAVIPESYNYGVLILLMMQRGGKWLQNPTFQCDFDTERSQLVLQLLTSIVNSIKEKVMEKS 191 (228)
Q Consensus 126 ~~~~~iPqQ~NGyDCGVFVlk~ae~~~~w~~~p~f~~~~~~~~~~~v~~~v~~~V~~mr~evl~~i 191 (228)
...++|||.||||||||||+||+.+++ +.| .+|++.. +..+|.+++..|
T Consensus 167 -~~~~~PqQ~N~~DCGvfv~~~~~~~~~--~~~---l~f~~~d-----------~~~~R~~i~~~I 215 (221)
T 1euv_A 167 -IHLDCPQQPNGYDCGIYVCMNTLYGSA--DAP---LDFDYKD-----------AIRMRRFIAHLI 215 (221)
T ss_dssp -EEECCCCCSSSSTHHHHHHHHHHHHHT--TCC---CCCCHHH-----------HHHHHHHHHHHH
T ss_pred -eecCCCCCCCCcCHHHHHHHHHHHHhC--CCC---CCcCHHH-----------HHHHHHHHHHHH
Confidence 235899999999999999999999977 344 4566643 345666666554
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=96.78 E-value=0.0069 Score=52.34 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=61.2
Q ss_pred CCCcceeeeEeeeCCCeEEEEcCCCCCCCCccchhHHHHHHH-HHHHHHhhhhhhhhhcCCcccc-eeeccCCcCCCCCC
Q 038478 59 HGFCHWYLLIIFIPEMRAEIWDPNPSTLTSKMFNSEAKTILR-SLDKILNGDARKVLAAGTKFEH-FTVLQVTEFAVIPE 136 (228)
Q Consensus 59 ~ggsHWsL~VId~keK~f~yyDSL~~~n~~~~~~~~a~~vl~-~L~~yl~de~kkk~~~~~d~~~-f~v~~~~~iPqQ~N 136 (228)
.||+||--.+.|-+.++++.+|.+|=+ +.+++++-. ..+..+.. ++-..+-+. .+....+...|=++
T Consensus 50 tGGvHWiA~Aw~P~s~~~YmFDPfG~s------d~~L~qiY~F~Y~~llkR-----SAL~sspdRCv~LvkstqsVQcp~ 118 (204)
T 4ekf_A 50 TGGVHWMAFAWNPRSKTCYLFEPFGFS------DQRLKQVYQFEYESLLRR-----SAIASSPDRCITLEKSTQSVQGPN 118 (204)
T ss_dssp --CCCEEEEEEETTTTEEEEECTBTTC------SHHHHHHHHHHHHHHHHH-----HCC--------EEEECCSBCSCTT
T ss_pred cCceeEEEeEecCCcceEEEeCCCCCC------HHHHHHHhhhhHHHHHHH-----HhhcCCCCceeEEEeccccccCcC
Confidence 799999999999999999999999986 455666654 22333322 221011001 12234456677789
Q ss_pred CCchHHHHHHHHHHhccccCCC
Q 038478 137 SYNYGVLILLMMQRGGKWLQNP 158 (228)
Q Consensus 137 GyDCGVFVlk~ae~~~~w~~~p 158 (228)
+--||.|-|.|.-..-.|-.+|
T Consensus 119 SaACGLFC~lFL~aF~~~p~~p 140 (204)
T 4ekf_A 119 SAAAGLFCCMFLHAFANWPQTP 140 (204)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSC
T ss_pred chhHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999998887
No 8
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.36 E-value=1e+02 Score=22.03 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHhHHHHhHHhhhhcCCCC
Q 038478 188 MEKSRDYNMANKITSELMCAAVENKYLKNLRKSRKMGHGR 227 (228)
Q Consensus 188 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
-+++++.=.=..+++|..|..+=++|++.|+..-.-.||+
T Consensus 36 r~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekcsh~~~~ 75 (77)
T 2cqn_A 36 RERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHSGPS 75 (77)
T ss_dssp HHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 3344444334457899999999999999999887777775
No 9
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=20.49 E-value=89 Score=24.38 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhHHHHhHHhh
Q 038478 184 KEKVMEKSRDYNMANKITSELMCAAVENKYLKNLRKS 220 (228)
Q Consensus 184 r~evl~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
-.|++..++.+-..+.+.-|.+-.|+|...++..+|.
T Consensus 2 ~~ell~~l~~l~~EKgI~~e~v~eaie~AL~~A~kk~ 38 (129)
T 2kwp_A 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKK 38 (129)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999988888775
No 10
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=20.03 E-value=19 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=8.8
Q ss_pred CCCCC-chHHHH
Q 038478 134 IPESY-NYGVLI 144 (228)
Q Consensus 134 Q~NGy-DCGVFV 144 (228)
|+++| |-|+..
T Consensus 8 qq~~y~DSGI~S 19 (26)
T 1p22_C 8 QQQSYLDSGIHS 19 (26)
T ss_pred hhcCcccccccc
Confidence 67888 999864
Done!