BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038479
         (133 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1
          Length = 129

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 12  HSHQQQQQHANGGHLSPFKFAKLLDPDASWD-KDQLGDVLHWIRQVVALVCGLLWGSIPL 70
                Q Q ANG  L    ++K+L  DA+WD KD+  DV++W RQ++ALV G++WG +PL
Sbjct: 7   KEEPPQPQLANGA-LKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPL 65

Query: 71  VGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSL 130
            G + I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+ 
Sbjct: 66  RGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTA 125

Query: 131 AHF 133
            H+
Sbjct: 126 IHY 128


>sp|Q9BUV8|CT024_HUMAN Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2
           SV=1
          Length = 137

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 17  QQQHANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIW 75
           Q Q ANG  L    ++K+L  DA+W DKD+  DV++W RQ++A+V G++WG +PL G + 
Sbjct: 12  QPQLANGA-LKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLG 70

Query: 76  IVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAH 132
           I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF++     ++  H
Sbjct: 71  IAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127


>sp|Q64237|DOPO_MOUSE Dopamine beta-hydroxylase OS=Mus musculus GN=Dbh PE=2 SV=1
          Length = 621

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 27 SPFKFAKLLDPDA----SWDKDQLGDVLHWIRQVVALVCGLLWG 66
          SPF +   LDP+     SW+   + +++H+  QV  L  G+L+G
Sbjct: 49 SPFPYHIPLDPEGILELSWNVSYVQEIIHFQLQVQGLRAGVLFG 92


>sp|Q09931|UBPY_CAEEL Probable ubiquitin carboxyl-terminal hydrolase K02C4.3
           OS=Caenorhabditis elegans GN=K02C4.3 PE=3 SV=3
          Length = 1276

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   KFNLHSHQQQQQHANGGHLSPFKFAKLLDPDASWDK--DQLGDVLHW 52
           K+ LH+       AN GH   +K  K +D    W+K  DQ  D + W
Sbjct: 690 KYELHAIIVHSGEANRGHYWTYKLKKSIDGLEEWEKLNDQNADRVDW 736


>sp|Q298S5|NDC1_DROPS Nucleoporin Ndc1 OS=Drosophila pseudoobscura pseudoobscura
          GN=Ndc1 PE=3 SV=1
          Length = 579

 Score = 30.0 bits (66), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 45 QLGDVLHWIRQVVALVCGLL--WGSIPLVGGI 74
          QL   LHWI   ++LVC +   + SIPLVG +
Sbjct: 43 QLLRPLHWISVTLSLVCSMYTWFASIPLVGAV 74


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.143    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,169,373
Number of Sequences: 539616
Number of extensions: 2107865
Number of successful extensions: 6464
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6458
Number of HSP's gapped (non-prelim): 20
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)