Query 038479
Match_columns 133
No_of_seqs 119 out of 192
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3415 Putative Rab5-interact 100.0 1.1E-45 2.5E-50 270.4 10.2 116 18-133 12-128 (129)
2 PF07019 Rab5ip: Rab5-interact 99.9 3.9E-28 8.6E-33 166.6 6.7 81 48-128 1-81 (81)
3 KOG4455 Uncharacterized conser 99.9 7.1E-24 1.5E-28 153.4 8.1 87 47-133 23-109 (110)
4 PF11085 YqhR: Conserved membr 89.0 1.1 2.4E-05 35.3 5.4 42 56-97 25-95 (173)
5 PF01102 Glycophorin_A: Glycop 87.3 0.6 1.3E-05 34.8 2.8 14 56-69 66-79 (122)
6 PRK09400 secE preprotein trans 72.2 11 0.00024 24.7 4.6 45 29-84 15-59 (61)
7 PRK13682 hypothetical protein; 67.2 18 0.00039 23.2 4.6 21 56-76 6-26 (51)
8 PF02417 Chromate_transp: Chro 66.7 38 0.00082 25.5 7.2 31 26-56 22-53 (169)
9 COG5487 Small integral membran 64.8 15 0.00033 23.7 3.9 18 58-75 8-25 (54)
10 TIGR00327 secE_euk_arch protei 55.0 39 0.00085 22.2 4.7 43 30-83 12-54 (61)
11 PF03188 Cytochrom_B561: Eukar 54.9 74 0.0016 22.5 7.5 85 43-129 30-128 (137)
12 PF06570 DUF1129: Protein of u 53.5 82 0.0018 24.5 7.2 17 115-131 151-167 (206)
13 PF07043 DUF1328: Protein of u 50.9 49 0.0011 20.0 4.3 21 58-78 3-23 (39)
14 COG2177 FtsX Cell division pro 49.7 59 0.0013 27.4 6.2 77 49-126 152-235 (297)
15 PF12811 BaxI_1: Bax inhibitor 48.1 1.2E+02 0.0026 25.5 7.7 12 1-12 1-12 (274)
16 PF13776 DUF4172: Domain of un 46.2 31 0.00067 23.9 3.4 31 37-67 9-39 (82)
17 PF05256 UPF0223: Uncharacteri 45.7 17 0.00037 25.7 2.0 21 39-59 9-29 (88)
18 PRK04387 hypothetical protein; 45.6 22 0.00047 25.3 2.5 22 38-59 8-29 (90)
19 COG3162 Predicted membrane pro 44.8 73 0.0016 23.2 5.2 22 108-129 59-80 (102)
20 TIGR02762 TraL_TIGR type IV co 44.0 88 0.0019 21.8 5.5 22 40-67 17-38 (95)
21 cd08766 Cyt_b561_ACYB-1_like P 42.7 1.4E+02 0.0031 22.4 7.7 82 44-127 37-132 (144)
22 PLN02680 carbon-monoxide oxyge 40.1 1.8E+02 0.0039 23.9 7.4 79 43-123 75-167 (232)
23 PRK09487 sdhC succinate dehydr 38.1 48 0.0011 24.5 3.5 32 98-130 54-85 (129)
24 PF01169 UPF0016: Uncharacteri 37.0 30 0.00066 23.4 2.1 39 39-77 11-53 (78)
25 cd08764 Cyt_b561_CG1275_like N 36.5 2.3E+02 0.0049 22.9 8.3 82 43-127 53-151 (214)
26 PF10112 Halogen_Hydrol: 5-bro 36.2 1E+02 0.0022 23.7 5.3 21 54-74 10-30 (199)
27 PF12666 PrgI: PrgI family pro 34.4 1.3E+02 0.0028 20.2 5.0 20 52-71 18-37 (93)
28 PF09835 DUF2062: Uncharacteri 32.8 78 0.0017 23.2 4.0 25 55-79 22-46 (154)
29 COG4858 Uncharacterized membra 32.7 2.8E+02 0.006 22.7 7.6 78 47-129 98-180 (226)
30 cd08765 Cyt_b561_CYBRD1 Verteb 32.5 2.3E+02 0.005 21.7 7.8 81 43-125 43-137 (153)
31 PHA00024 IX minor coat protein 32.1 42 0.00092 19.7 1.9 19 113-131 5-23 (33)
32 PF05412 Peptidase_C33: Equine 31.9 19 0.0004 26.5 0.4 36 20-55 20-56 (108)
33 PRK00665 petG cytochrome b6-f 31.2 21 0.00045 21.5 0.5 14 58-71 4-17 (37)
34 cd03131 GATase1_HTS Type 1 glu 31.0 31 0.00066 26.9 1.5 24 44-67 85-108 (175)
35 PF00034 Cytochrom_C: Cytochro 30.5 37 0.0008 21.1 1.6 17 40-56 74-90 (91)
36 TIGR03546 conserved hypothetic 30.5 92 0.002 23.9 4.1 27 54-80 18-44 (154)
37 COG3619 Predicted membrane pro 30.2 2.4E+02 0.0052 22.9 6.7 38 42-79 164-201 (226)
38 CHL00008 petG cytochrome b6/f 30.0 22 0.00049 21.3 0.5 15 58-72 4-18 (37)
39 PF00584 SecE: SecE/Sec61-gamm 29.6 1.2E+02 0.0026 18.7 3.9 11 39-49 16-27 (57)
40 PF10112 Halogen_Hydrol: 5-bro 28.2 1.6E+02 0.0034 22.7 5.1 37 52-88 4-41 (199)
41 PF15069 FAM163: FAM163 family 27.3 80 0.0017 24.3 3.2 34 64-99 2-39 (143)
42 PF03239 FTR1: Iron permease F 27.2 1.6E+02 0.0035 24.4 5.3 21 107-127 72-92 (306)
43 PF02529 PetG: Cytochrome B6-F 26.7 34 0.00074 20.6 0.9 14 58-71 4-17 (37)
44 cd03499 SQR_TypeC_SdhC Succina 25.9 1.1E+02 0.0024 21.5 3.6 30 98-128 46-75 (117)
45 COG2443 Sss1 Preprotein transl 25.9 1.5E+02 0.0032 19.9 3.9 43 30-83 17-59 (65)
46 PLN03211 ABC transporter G-25; 25.8 3.7E+02 0.0079 24.9 7.8 34 51-84 409-449 (659)
47 COG4476 Uncharacterized protei 25.5 70 0.0015 22.7 2.4 20 38-57 8-27 (90)
48 COG4920 Predicted membrane pro 25.3 1.9E+02 0.0042 23.9 5.3 75 54-128 13-118 (249)
49 PRK11677 hypothetical protein; 25.1 57 0.0012 24.6 2.0 17 52-68 3-19 (134)
50 PF01034 Syndecan: Syndecan do 25.1 24 0.00052 23.6 0.0 12 57-68 12-23 (64)
51 PF08802 CytB6-F_Fe-S: Cytochr 24.7 88 0.0019 18.9 2.4 27 54-80 9-35 (39)
52 TIGR00937 2A51 chromate transp 24.0 4.5E+02 0.0098 22.5 7.6 28 29-56 17-45 (368)
53 cd08763 Cyt_b561_CYB561 Verteb 23.9 3.2E+02 0.0069 20.5 7.7 82 43-128 36-133 (143)
54 PF11313 DUF3116: Protein of u 23.3 62 0.0013 22.7 1.8 16 39-54 37-52 (85)
55 KOG3059 N-acetylglucosaminyltr 23.3 2.1E+02 0.0045 24.5 5.2 52 56-107 229-283 (292)
56 PRK07597 secE preprotein trans 22.8 1.5E+02 0.0032 18.9 3.5 15 37-51 22-37 (64)
57 COG3247 HdeD Uncharacterized c 22.6 3.9E+02 0.0085 21.1 6.7 68 54-123 81-149 (185)
58 PF02439 Adeno_E3_CR2: Adenovi 22.6 44 0.00095 20.2 0.8 13 55-67 4-16 (38)
59 PLN02351 cytochromes b561 fami 22.3 4.5E+02 0.0098 21.8 7.9 37 47-83 83-132 (242)
60 PF01595 DUF21: Domain of unkn 22.2 3.2E+02 0.0069 19.9 5.8 49 42-90 51-102 (183)
61 COG3766 Predicted membrane pro 22.1 1.4E+02 0.003 22.7 3.6 41 70-113 5-45 (133)
62 COG2155 Uncharacterized conser 21.2 2.1E+02 0.0046 19.9 4.1 25 49-73 5-29 (79)
63 TIGR00964 secE_bact preprotein 21.2 1.7E+02 0.0036 18.2 3.4 14 37-50 13-27 (55)
64 COG4930 Predicted ATP-dependen 20.9 29 0.00062 31.8 -0.3 24 29-52 424-447 (683)
65 PF04165 DUF401: Protein of un 20.9 5.6E+02 0.012 22.3 7.6 35 23-57 107-141 (385)
66 PF13172 PepSY_TM_1: PepSY-ass 20.9 1.5E+02 0.0032 16.6 2.8 25 49-73 4-28 (34)
67 PF01940 DUF92: Integral membr 20.7 3.2E+02 0.007 22.1 5.7 63 56-118 24-91 (226)
68 PHA02692 hypothetical protein; 20.2 2.4E+02 0.0052 19.2 4.1 15 44-58 18-32 (70)
69 PF10766 DUF2592: Protein of u 20.1 1.8E+02 0.004 17.8 3.2 19 49-67 8-26 (41)
No 1
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-45 Score=270.45 Aligned_cols=116 Identities=58% Similarity=0.991 Sum_probs=112.0
Q ss_pred hhhccCCCCChHHHhhhhCCCCCC-ChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 038479 18 QQHANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLK 96 (133)
Q Consensus 18 ~~~~~~~~~~~s~~~~a~~~~~~w-dKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~ 96 (133)
|++.+|++..+|.+++.+++|++| ||||++|||||+||++++++|++|||+||+|+.|++.|+.+++++.|+|++++++
T Consensus 12 q~q~~n~tl~~s~~~kl~~~da~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~ 91 (129)
T KOG3415|consen 12 QQQEQNATLSESKAAKLTDSDAEWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLK 91 (129)
T ss_pred chhhhcccccHHHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 334567999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccchhhcchhhhhhHHHHHHHHHhhcccC
Q 038479 97 IDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 133 (133)
Q Consensus 97 ~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~Y~lvH~ 133 (133)
+|||+|||.||+.+||||++|++|+++|+++|++.|+
T Consensus 92 VDEee~GG~weL~kEGf~asfa~FlvtWIi~Yt~~hy 128 (129)
T KOG3415|consen 92 VDEEEYGGHWELLKEGFMASFALFLVTWIIFYTLAHY 128 (129)
T ss_pred cCHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999996
No 2
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=99.95 E-value=3.9e-28 Score=166.57 Aligned_cols=81 Identities=37% Similarity=0.659 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcchhhhhhHHHHHHHHH
Q 038479 48 DVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILV 127 (133)
Q Consensus 48 ~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~ 127 (133)
|+++|+||++|+++|++|||+||||+.||++|++++.+++++++.+.++.+++++++++|+++||+++++++|||+||++
T Consensus 1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~ 80 (81)
T PF07019_consen 1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence 78999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred h
Q 038479 128 Y 128 (133)
Q Consensus 128 Y 128 (133)
|
T Consensus 81 Y 81 (81)
T PF07019_consen 81 Y 81 (81)
T ss_pred C
Confidence 8
No 3
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=7.1e-24 Score=153.41 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcchhhhhhHHHHHHHH
Q 038479 47 GDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWIL 126 (133)
Q Consensus 47 l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG~~~sl~~FvL~Wtl 126 (133)
.+++.++|+.+|+++||+||||||||+.||++|++.+.+.+.++..|++..+..+|.++..+++|+++.++++|||+||+
T Consensus 23 ~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~f~~~f~~Gl~tyVl~Wtf 102 (110)
T KOG4455|consen 23 KKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNLFTESFLGGLTTYVLAWTF 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHHHHHHHhchHHHHHHHHHH
Confidence 46899999999999999999999999999999999988888888889988888899888899999999999999999999
Q ss_pred HhhcccC
Q 038479 127 VYSLAHF 133 (133)
Q Consensus 127 ~Y~lvH~ 133 (133)
.|++||+
T Consensus 103 ~Y~lv~~ 109 (110)
T KOG4455|consen 103 FYGLVHV 109 (110)
T ss_pred Hhhhhcc
Confidence 9999996
No 4
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=89.03 E-value=1.1 Score=35.29 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhhccch-----------------------------hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 038479 56 VVALVCGLLWGSIPLV-----------------------------GGIWIVIFLLISSAIIYGYYAMVLKI 97 (133)
Q Consensus 56 i~ali~Gi~aGILgLt-----------------------------G~~Gfl~F~~~~~~~~~~~~~~~~~~ 97 (133)
.++...|++||.++.- -+.|++++.+++.+.+++|+..+.++
T Consensus 25 ~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~ 95 (173)
T PF11085_consen 25 EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKF 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788889999987631 13588889999999999998766554
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.30 E-value=0.6 Score=34.75 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=12.5
Q ss_pred HHHHHHhhhhhhcc
Q 038479 56 VVALVCGLLWGSIP 69 (133)
Q Consensus 56 i~ali~Gi~aGILg 69 (133)
+.++++|++|||++
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 68899999999987
No 6
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=72.20 E-value=11 Score=24.70 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHH
Q 038479 29 FKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISS 84 (133)
Q Consensus 29 s~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~ 84 (133)
..++|.++.-.+-|+||+.++. -+.|+.-. +-|+.||+++++.+.
T Consensus 15 ~d~~rvl~~~~KPd~~Ef~~ia--------~~~~iG~~---i~G~iGf~Ikli~~~ 59 (61)
T PRK09400 15 EDYKRVLKVARKPTREEFLLVA--------KVTGLGIL---LIGLIGFIIYLIMTL 59 (61)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHh
Confidence 4455666666666888876643 23333332 345667777776543
No 7
>PRK13682 hypothetical protein; Provisional
Probab=67.20 E-value=18 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhccchhhHHH
Q 038479 56 VVALVCGLLWGSIPLVGGIWI 76 (133)
Q Consensus 56 i~ali~Gi~aGILgLtG~~Gf 76 (133)
++-++..++||++|.+|+.|-
T Consensus 6 liFliiA~iA~~lGF~GiAg~ 26 (51)
T PRK13682 6 IIFLVIALIAAVLGFGGIAGA 26 (51)
T ss_pred HHHHHHHHHHHHhccchHHHH
Confidence 345678899999999999773
No 8
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=66.72 E-value=38 Score=25.55 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=23.8
Q ss_pred CChHHHhhhhCCCCCC-ChhhhhHHHHHHHHH
Q 038479 26 LSPFKFAKLLDPDASW-DKDQLGDVLHWIRQV 56 (133)
Q Consensus 26 ~~~s~~~~a~~~~~~w-dKde~l~vi~w~Rqi 56 (133)
.-.+...+.+-.+..| |.||+.|.+.=++-.
T Consensus 22 a~i~~~~~~~V~~~~wlt~~~f~~~~al~q~~ 53 (169)
T PF02417_consen 22 AIIPLIQREFVERRGWLTEEEFLEGLALAQAL 53 (169)
T ss_pred HHHHHHHHHHhHccCCCCHHHHHHHHHHHHcC
Confidence 3346677777777899 999999988877754
No 9
>COG5487 Small integral membrane protein [Function unknown]
Probab=64.80 E-value=15 Score=23.74 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHhhhhhhccchhhHH
Q 038479 58 ALVCGLLWGSIPLVGGIW 75 (133)
Q Consensus 58 ali~Gi~aGILgLtG~~G 75 (133)
=++.-++||.+|+.|+.|
T Consensus 8 FlvialIa~~lGFgGiag 25 (54)
T COG5487 8 FLVIALIAGALGFGGIAG 25 (54)
T ss_pred HHHHHHHHHHhCcccHHH
Confidence 356667888899988866
No 10
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=55.01 E-value=39 Score=22.23 Aligned_cols=43 Identities=21% Similarity=0.073 Sum_probs=23.4
Q ss_pred HHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHH
Q 038479 30 KFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLIS 83 (133)
Q Consensus 30 ~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~ 83 (133)
.++|.++.-.+-|+||+.++. -+.|+.-.+ -|+.||+.+++..
T Consensus 12 ~~~r~lk~~~KPd~~Ef~~ia--------k~t~iG~~i---~G~IGf~Ikli~~ 54 (61)
T TIGR00327 12 EGTRVLAVCKKPDLEEYLKVA--------KVTGIGIII---VGIIGYIIKIIAI 54 (61)
T ss_pred HHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHH
Confidence 445555555666888876643 333433333 3555666665543
No 11
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=54.86 E-value=74 Score=22.52 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhcc--------------chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccch
Q 038479 43 KDQLGDVLHWIRQVVALVCGLLWGSIP--------------LVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGAL 108 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~Gi~aGILg--------------LtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el 108 (133)
+++....+|++-|++++++.++..++. .-+..|++.+++..+-....+.....+..++...+....
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~ 109 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNK 109 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHH
Confidence 445566789999999888877776663 234456666655433333333333332223333333333
Q ss_pred hhcchhhhhhHHHHHHHHHhh
Q 038479 109 LQEGLFASTTLFLLVWILVYS 129 (133)
Q Consensus 109 ~~eG~~~sl~~FvL~Wtl~Y~ 129 (133)
+ --..+..+|++.+.-.+.
T Consensus 110 ~--H~~~G~~~~~l~~~~i~~ 128 (137)
T PF03188_consen 110 W--HRWLGYLIYVLAIATIFL 128 (137)
T ss_pred H--HHHHHHHHHHHHHHHHHH
Confidence 3 456788888888875544
No 12
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=53.52 E-value=82 Score=24.52 Aligned_cols=17 Identities=24% Similarity=0.753 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHhhcc
Q 038479 115 ASTTLFLLVWILVYSLA 131 (133)
Q Consensus 115 ~sl~~FvL~Wtl~Y~lv 131 (133)
......++.|.+++.+.
T Consensus 151 ~~~~~~~~~w~~~~~~~ 167 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLT 167 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33446666787776653
No 13
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=50.93 E-value=49 Score=20.03 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=16.7
Q ss_pred HHHHhhhhhhccchhhHHHHH
Q 038479 58 ALVCGLLWGSIPLVGGIWIVI 78 (133)
Q Consensus 58 ali~Gi~aGILgLtG~~Gfl~ 78 (133)
-++..++||++|.+|+.|-..
T Consensus 3 FliiAliAg~lGF~Giag~a~ 23 (39)
T PF07043_consen 3 FLIIALIAGVLGFGGIAGTAA 23 (39)
T ss_pred hHHHHHHHHHcCcccHHHHHH
Confidence 357788999999999977543
No 14
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=49.72 E-value=59 Score=27.37 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcC-------CCCccccccchhhcchhhhhhHHH
Q 038479 49 VLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKI-------DEEDFGGHGALLQEGLFASTTLFL 121 (133)
Q Consensus 49 vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~-------~~~~f~~~~el~~eG~~~sl~~Fv 121 (133)
=-.|++...++.-++-..-+++.-+..++.++++...+=...+++--.+ -++.|- ++.++.||..-++.+.+
T Consensus 152 ~~~wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI-~~PFl~~g~~~gl~Ga~ 230 (297)
T COG2177 152 DREWVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFI-RRPFLYEGMLIGLLGAL 230 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHH-HhHHHHHHHHHHHHHHH
Confidence 3478999999888888888888888888777777665555555422222 122232 46789999999999999
Q ss_pred HHHHH
Q 038479 122 LVWIL 126 (133)
Q Consensus 122 L~Wtl 126 (133)
+.|.+
T Consensus 231 ~~~~l 235 (297)
T COG2177 231 IALAL 235 (297)
T ss_pred HHHHH
Confidence 99988
No 15
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=48.07 E-value=1.2e+02 Score=25.47 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.1
Q ss_pred CCCCcccccccc
Q 038479 1 MKEGKTVKFNLH 12 (133)
Q Consensus 1 ~~~~~~~~~~~~ 12 (133)
||+++...++..
T Consensus 1 ~r~ssNPvf~~~ 12 (274)
T PF12811_consen 1 MRRSSNPVFSSL 12 (274)
T ss_pred CCCcccccccCC
Confidence 888875544333
No 16
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=46.22 E-value=31 Score=23.86 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHHhhhhhh
Q 038479 37 PDASWDKDQLGDVLHWIRQVVALVCGLLWGS 67 (133)
Q Consensus 37 ~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGI 67 (133)
|+-.||++.+...+.-+|.-.+.+.|...++
T Consensus 9 P~F~wd~~~l~~~l~~~~~~~G~LlG~~~~l 39 (82)
T PF13776_consen 9 PNFRWDSSALEPLLAEVRLRQGRLLGKMSHL 39 (82)
T ss_pred CCCEEcHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5678999999999999999999999887654
No 17
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=45.67 E-value=17 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCCChhhhhHHHHHHHHHHHH
Q 038479 39 ASWDKDQLGDVLHWIRQVVAL 59 (133)
Q Consensus 39 ~~wdKde~l~vi~w~Rqi~al 59 (133)
..|+.||+.+|+....++-..
T Consensus 9 ~dWsteEii~Vi~F~~~VE~A 29 (88)
T PF05256_consen 9 PDWSTEEIIDVINFFNAVEKA 29 (88)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999887543
No 18
>PRK04387 hypothetical protein; Provisional
Probab=45.59 E-value=22 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=18.1
Q ss_pred CCCCChhhhhHHHHHHHHHHHH
Q 038479 38 DASWDKDQLGDVLHWIRQVVAL 59 (133)
Q Consensus 38 ~~~wdKde~l~vi~w~Rqi~al 59 (133)
+.+|+.||+.+|+.....+=..
T Consensus 8 d~dWsteEii~Vi~F~~~VE~a 29 (90)
T PRK04387 8 DLDWSTEEMISVLHFFNAVEKA 29 (90)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999998877543
No 19
>COG3162 Predicted membrane protein [Function unknown]
Probab=44.81 E-value=73 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=18.2
Q ss_pred hhhcchhhhhhHHHHHHHHHhh
Q 038479 108 LLQEGLFASTTLFLLVWILVYS 129 (133)
Q Consensus 108 l~~eG~~~sl~~FvL~Wtl~Y~ 129 (133)
.++-|+.-++..|+++|++.+-
T Consensus 59 ~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 59 SVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred ceehhHhHHHHHHHHHHHHHHH
Confidence 4667888999999999998763
No 20
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=44.03 E-value=88 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=14.5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhhhhh
Q 038479 40 SWDKDQLGDVLHWIRQVVALVCGLLWGS 67 (133)
Q Consensus 40 ~wdKde~l~vi~w~Rqi~ali~Gi~aGI 67 (133)
-||-||+.-+ .++.+.|+..|.
T Consensus 17 g~t~DE~i~~------~~~~~~Gi~~~~ 38 (95)
T TIGR02762 17 GLPLDEFLPG------ATLFGIGILSGK 38 (95)
T ss_pred EeeHHHHHHH------HHHHHHHHHHhh
Confidence 4699998322 566677777764
No 21
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=42.74 E-value=1.4e+02 Score=22.40 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhc-----------cc---hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchh
Q 038479 44 DQLGDVLHWIRQVVALVCGLLWGSI-----------PL---VGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALL 109 (133)
Q Consensus 44 de~l~vi~w~Rqi~ali~Gi~aGIL-----------gL---tG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~ 109 (133)
+...+.+||+-|.+|++++++.-+. -+ -|+.|++.+++..+-....+.+.+...-+++. +..+.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~--r~~~~ 114 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNT--RAALL 114 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH--HHHHH
Confidence 4445689999999999998885443 23 46678777766544222222221222212222 24555
Q ss_pred hcchhhhhhHHHHHHHHH
Q 038479 110 QEGLFASTTLFLLVWILV 127 (133)
Q Consensus 110 ~eG~~~sl~~FvL~Wtl~ 127 (133)
.=..+.|..+|++.....
T Consensus 115 p~H~~~G~~~~~la~~t~ 132 (144)
T cd08766 115 PWHVFLGLAIYYLAIATA 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556678899999887644
No 22
>PLN02680 carbon-monoxide oxygenase
Probab=40.05 E-value=1.8e+02 Score=23.88 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhc-----------cc---hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccch
Q 038479 43 KDQLGDVLHWIRQVVALVCGLLWGSI-----------PL---VGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGAL 108 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~Gi~aGIL-----------gL---tG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el 108 (133)
+.+..+.+||.-|.+|++++++.-+. .+ -|+.|++.+++..+=....+.+.+...-.+.. +..+
T Consensus 75 ~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~--R~~~ 152 (232)
T PLN02680 75 TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNS--RASL 152 (232)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHH--HHHH
Confidence 34567899999999999998875443 33 45677776655543222222221222111111 2234
Q ss_pred hhcchhhhhhHHHHH
Q 038479 109 LQEGLFASTTLFLLV 123 (133)
Q Consensus 109 ~~eG~~~sl~~FvL~ 123 (133)
..=..+.+...|+|.
T Consensus 153 ~p~H~~~G~~if~La 167 (232)
T PLN02680 153 LPWHVFFGIYIYALA 167 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666777665
No 23
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=38.09 E-value=48 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCCccccccchhhcchhhhhhHHHHHHHHHhhc
Q 038479 98 DEEDFGGHGALLQEGLFASTTLFLLVWILVYSL 130 (133)
Q Consensus 98 ~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~Y~l 130 (133)
.||.|....++ .+....-+..|.++|.++|=+
T Consensus 54 ~p~~f~~~~~~-~~~~~~k~~~~~~~~al~yH~ 85 (129)
T PRK09487 54 SPEGFEQAAAI-MDSFFVKFIMWGILTALAYHV 85 (129)
T ss_pred CHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence 35555433332 344555666677777777743
No 24
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=37.00 E-value=30 Score=23.35 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCC-ChhhhhHHHHHH---HHHHHHHHhhhhhhccchhhHHHH
Q 038479 39 ASW-DKDQLGDVLHWI---RQVVALVCGLLWGSIPLVGGIWIV 77 (133)
Q Consensus 39 ~~w-dKde~l~vi~w~---Rqi~ali~Gi~aGILgLtG~~Gfl 77 (133)
+|| ||-++....-=. |+...++.|...|..-.+++.-.+
T Consensus 11 aE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~ 53 (78)
T PF01169_consen 11 AELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLL 53 (78)
T ss_pred HHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 588 999997765544 458889999998887777665433
No 25
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.53 E-value=2.3e+02 Score=22.87 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=46.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhh-------------hhccc---hhhHHHHHHHHHHHHHHHHHHHH-HhcCCCCccccc
Q 038479 43 KDQLGDVLHWIRQVVALVCGLLW-------------GSIPL---VGGIWIVIFLLISSAIIYGYYAM-VLKIDEEDFGGH 105 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~Gi~a-------------GILgL---tG~~Gfl~F~~~~~~~~~~~~~~-~~~~~~~~f~~~ 105 (133)
+..-.+.+||.=|.+|+++|++. |+-.+ -|+.|++.+++...-....+.+. +.+. .+.. +
T Consensus 53 ~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~-~~~~--r 129 (214)
T cd08764 53 RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGL-PETL--R 129 (214)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhccc-chHH--H
Confidence 33446889999999999999886 33333 45667776655533222222111 1122 1111 1
Q ss_pred cchhhcchhhhhhHHHHHHHHH
Q 038479 106 GALLQEGLFASTTLFLLVWILV 127 (133)
Q Consensus 106 ~el~~eG~~~sl~~FvL~Wtl~ 127 (133)
..+..=..+.|+.+|++.....
T Consensus 130 ~~~~p~H~~~Gl~~fvLaiaT~ 151 (214)
T cd08764 130 AAYLPLHVFFGLFIFVLAVATA 151 (214)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 2333345667888888876644
No 26
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=36.22 E-value=1e+02 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhhccchhhH
Q 038479 54 RQVVALVCGLLWGSIPLVGGI 74 (133)
Q Consensus 54 Rqi~ali~Gi~aGILgLtG~~ 74 (133)
|.++|++++++.++++.-++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666555443
No 27
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=34.43 E-value=1.3e+02 Score=20.24 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhhccch
Q 038479 52 WIRQVVALVCGLLWGSIPLV 71 (133)
Q Consensus 52 w~Rqi~ali~Gi~aGILgLt 71 (133)
-.||.+.+++|++.|+.-.-
T Consensus 18 T~RQl~~l~~~~~~~~~~~~ 37 (93)
T PF12666_consen 18 TLRQLICLAIGALVGVGVYL 37 (93)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888865443
No 28
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=32.84 E-value=78 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhhccchhhHHHHHH
Q 038479 55 QVVALVCGLLWGSIPLVGGIWIVIF 79 (133)
Q Consensus 55 qi~ali~Gi~aGILgLtG~~Gfl~F 79 (133)
-..|+.+|+..|++|.-|+.-++..
T Consensus 22 iA~g~AiG~fig~~P~~g~~~~l~~ 46 (154)
T PF09835_consen 22 IALGFAIGVFIGFLPIFGLQTVLAI 46 (154)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4568899999999999887644443
No 29
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=32.74 E-value=2.8e+02 Score=22.71 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHH-----HHHHHHhcCCCCccccccchhhcchhhhhhHHH
Q 038479 47 GDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIY-----GYYAMVLKIDEEDFGGHGALLQEGLFASTTLFL 121 (133)
Q Consensus 47 l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~-----~~~~~~~~~~~~~f~~~~el~~eG~~~sl~~Fv 121 (133)
+|.---+--+++++.|+.+=+-.=-=.+|++.-++...+-.+ .||..-.+.|.+.-++.|+.+ .....=+
T Consensus 98 lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~-----lv~~~sm 172 (226)
T COG4858 98 LDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYL-----LVAVLSM 172 (226)
T ss_pred ecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHH-----HHHHHHH
Confidence 455555667888888887633221111222222222111111 112222344666666656543 3344557
Q ss_pred HHHHHHhh
Q 038479 122 LVWILVYS 129 (133)
Q Consensus 122 L~Wtl~Y~ 129 (133)
+.|+++|.
T Consensus 173 ~lWi~v~i 180 (226)
T COG4858 173 LLWIAVMI 180 (226)
T ss_pred HHHHHHHH
Confidence 78888773
No 30
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=32.48 E-value=2.3e+02 Score=21.69 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhc-----------c---chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccch
Q 038479 43 KDQLGDVLHWIRQVVALVCGLLWGSI-----------P---LVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGAL 108 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~Gi~aGIL-----------g---LtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el 108 (133)
+....+.+||+-|.+|+++++++-+. - +-|+.|++.+++..+=....+...+...-+.+. +..+
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~--r~~~ 120 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRL--RAAL 120 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHH--HHHH
Confidence 35578999999999999998876543 2 445677777665543222222222122111121 3455
Q ss_pred hhcchhhhhhHHHHHHH
Q 038479 109 LQEGLFASTTLFLLVWI 125 (133)
Q Consensus 109 ~~eG~~~sl~~FvL~Wt 125 (133)
..=..+.+...|+|.=.
T Consensus 121 ~p~H~~~G~~i~~Lai~ 137 (153)
T cd08765 121 MPLHVYSGLFIFGTVIA 137 (153)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556677778877633
No 31
>PHA00024 IX minor coat protein
Probab=32.08 E-value=42 Score=19.70 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.0
Q ss_pred hhhhhhHHHHHHHHHhhcc
Q 038479 113 LFASTTLFLLVWILVYSLA 131 (133)
Q Consensus 113 ~~~sl~~FvL~Wtl~Y~lv 131 (133)
+...++.|+|-|++.|++.
T Consensus 5 l~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 5 LGYFFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999864
No 32
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=31.93 E-value=19 Score=26.48 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred hccCCCCChHHHhhhhCCCCCC-ChhhhhHHHHHHHH
Q 038479 20 HANGGHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQ 55 (133)
Q Consensus 20 ~~~~~~~~~s~~~~a~~~~~~w-dKde~l~vi~w~Rq 55 (133)
|+..+..+.+.+.+.-.+.++| |.+|+..+|.-+|-
T Consensus 20 n~m~~~~~t~~l~~~~r~~d~W~~dedl~~~iq~l~l 56 (108)
T PF05412_consen 20 NHMMGGEFTTPLPQRNRPSDDWADDEDLYQVIQSLRL 56 (108)
T ss_pred HHhhccCCCccccccCCChHHccChHHHHHHHHHccC
Confidence 4555556668888888888999 88888888866543
No 33
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=31.21 E-value=21 Score=21.46 Aligned_cols=14 Identities=43% Similarity=1.094 Sum_probs=11.6
Q ss_pred HHHHhhhhhhccch
Q 038479 58 ALVCGLLWGSIPLV 71 (133)
Q Consensus 58 ali~Gi~aGILgLt 71 (133)
.+++|++-|.+|.|
T Consensus 4 plL~GiVLGlipiT 17 (37)
T PRK00665 4 PLLCGIVLGLIPVT 17 (37)
T ss_pred hhhhhHHHHhHHHH
Confidence 46889999999876
No 34
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=31.03 E-value=31 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhh
Q 038479 44 DQLGDVLHWIRQVVALVCGLLWGS 67 (133)
Q Consensus 44 de~l~vi~w~Rqi~ali~Gi~aGI 67 (133)
||+.+.+.|.|+-.-..+|++||.
T Consensus 85 ~El~~i~dwa~~~v~stl~iCWga 108 (175)
T cd03131 85 EELTEILDWAKTHVTSTLFSCWAA 108 (175)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 389999999998888888888874
No 35
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=30.53 E-value=37 Score=21.06 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCChhhhhHHHHHHHHH
Q 038479 40 SWDKDQLGDVLHWIRQV 56 (133)
Q Consensus 40 ~wdKde~l~vi~w~Rqi 56 (133)
.-+.+|+-+++.|+|+.
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 45899999999999974
No 36
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=30.50 E-value=92 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHH
Q 038479 54 RQVVALVCGLLWGSIPLVGGIWIVIFL 80 (133)
Q Consensus 54 Rqi~ali~Gi~aGILgLtG~~Gfl~F~ 80 (133)
+-..++.+|+..|+.|+-|+.-++..+
T Consensus 18 ~iA~g~a~Gvf~g~~P~~glh~~~~~~ 44 (154)
T TIGR03546 18 QLALAVALGMILGLTPFLNLHNIALLF 44 (154)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 346789999999999998886554433
No 37
>COG3619 Predicted membrane protein [Function unknown]
Probab=30.18 E-value=2.4e+02 Score=22.94 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=25.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHH
Q 038479 42 DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIF 79 (133)
Q Consensus 42 dKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F 79 (133)
||+...+.+-+.--+++.++|.++|.+.-.=+....+.
T Consensus 164 ~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~ 201 (226)
T COG3619 164 DKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALW 201 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46666777777777888999999988754333333333
No 38
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=29.96 E-value=22 Score=21.33 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=12.0
Q ss_pred HHHHhhhhhhccchh
Q 038479 58 ALVCGLLWGSIPLVG 72 (133)
Q Consensus 58 ali~Gi~aGILgLtG 72 (133)
.+++|++-|.+|.|-
T Consensus 4 ~lL~GiVLGlipvTl 18 (37)
T CHL00008 4 VLLFGIVLGLIPITL 18 (37)
T ss_pred hhhhhHHHHhHHHHH
Confidence 468899999998773
No 39
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=29.61 E-value=1.2e+02 Score=18.69 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=7.0
Q ss_pred CCC-ChhhhhHH
Q 038479 39 ASW-DKDQLGDV 49 (133)
Q Consensus 39 ~~w-dKde~l~v 49 (133)
-+| ||+|+.+.
T Consensus 16 v~WP~~~e~~~~ 27 (57)
T PF00584_consen 16 VTWPSRKELLKS 27 (57)
T ss_dssp HHCCCTHHHHHH
T ss_pred hcCCCHHHHHHH
Confidence 357 77776553
No 40
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.16 E-value=1.6e+02 Score=22.65 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhh-hhhhccchhhHHHHHHHHHHHHHHH
Q 038479 52 WIRQVVALVCGL-LWGSIPLVGGIWIVIFLLISSAIIY 88 (133)
Q Consensus 52 w~Rqi~ali~Gi-~aGILgLtG~~Gfl~F~~~~~~~~~ 88 (133)
-.|.+.-.++|+ ++++..+..+.|+-.++++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 41 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFFGFDHSFLLSLLIGA 41 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356666666664 5555557888888888877665553
No 41
>PF15069 FAM163: FAM163 family
Probab=27.34 E-value=80 Score=24.26 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=18.9
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHH----HhcCCC
Q 038479 64 LWGSIPLVGGIWIVIFLLISSAIIYGYYAM----VLKIDE 99 (133)
Q Consensus 64 ~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~----~~~~~~ 99 (133)
.||-+-.|| |++.++++-+++..+-|.. +++.++
T Consensus 2 taGTvVItG--gILAtVILLcIIaVLCYCRLQYYCCKK~~ 39 (143)
T PF15069_consen 2 TAGTVVITG--GILATVILLCIIAVLCYCRLQYYCCKKNE 39 (143)
T ss_pred CceeEEEec--hHHHHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 355555665 5666666555555544443 566643
No 42
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=27.23 E-value=1.6e+02 Score=24.41 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.0
Q ss_pred chhhcchhhhhhHHHHHHHHH
Q 038479 107 ALLQEGLFASTTLFLLVWILV 127 (133)
Q Consensus 107 el~~eG~~~sl~~FvL~Wtl~ 127 (133)
|=..||.+..++..+++|..+
T Consensus 72 ~e~~eg~~~liA~~li~~m~~ 92 (306)
T PF03239_consen 72 EELFEGAISLIAVALITWMVF 92 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335588889888888888764
No 43
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=26.73 E-value=34 Score=20.59 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=11.1
Q ss_pred HHHHhhhhhhccch
Q 038479 58 ALVCGLLWGSIPLV 71 (133)
Q Consensus 58 ali~Gi~aGILgLt 71 (133)
.+++|++-|.+|.|
T Consensus 4 plL~GiVlGli~vt 17 (37)
T PF02529_consen 4 PLLSGIVLGLIPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHH
Confidence 47888888888866
No 44
>cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein a
Probab=25.94 E-value=1.1e+02 Score=21.47 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=15.4
Q ss_pred CCCccccccchhhcchhhhhhHHHHHHHHHh
Q 038479 98 DEEDFGGHGALLQEGLFASTTLFLLVWILVY 128 (133)
Q Consensus 98 ~~~~f~~~~el~~eG~~~sl~~FvL~Wtl~Y 128 (133)
+++.|....++. ......+..++++|.++|
T Consensus 46 ~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~y 75 (117)
T cd03499 46 SPESFESVSALL-GSWLGKLVLFGLTWALFY 75 (117)
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 455554333333 333445566666776666
No 45
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=25.91 E-value=1.5e+02 Score=19.88 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHH
Q 038479 30 KFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLIS 83 (133)
Q Consensus 30 ~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~ 83 (133)
..+|.+....+-|.||++.+. -+.|+.-. +-|..||+.+++..
T Consensus 17 e~~rvl~~arKP~~eEy~~~a--------Ki~~~Gi~---liG~IGfiI~li~~ 59 (65)
T COG2443 17 EYRRVLKVARKPDWEEYSKIA--------KITGLGIL---LIGIIGFIIYLIMI 59 (65)
T ss_pred HHHHHHHHHhCCCHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHH
Confidence 455555555566788877653 23333332 45667788777643
No 46
>PLN03211 ABC transporter G-25; Provisional
Probab=25.75 E-value=3.7e+02 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhhcc-------chhhHHHHHHHHHHH
Q 038479 51 HWIRQVVALVCGLLWGSIP-------LVGGIWIVIFLLISS 84 (133)
Q Consensus 51 ~w~Rqi~ali~Gi~aGILg-------LtG~~Gfl~F~~~~~ 84 (133)
.+.|-+.++++|++.|.+= +..-.|++||.++..
T Consensus 409 ~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~ 449 (659)
T PLN03211 409 NTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFW 449 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888764 234568887765543
No 47
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=70 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=17.5
Q ss_pred CCCCChhhhhHHHHHHHHHH
Q 038479 38 DASWDKDQLGDVLHWIRQVV 57 (133)
Q Consensus 38 ~~~wdKde~l~vi~w~Rqi~ 57 (133)
+-.|+-+|+.+||+++.++=
T Consensus 8 dldWsTEE~~~Vl~Ffn~VE 27 (90)
T COG4476 8 DLDWSTEEMISVLHFFNAVE 27 (90)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 46899999999999998874
No 48
>COG4920 Predicted membrane protein [Function unknown]
Probab=25.33 E-value=1.9e+02 Score=23.89 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH----------------------------HHHhcCCCCccccc
Q 038479 54 RQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYY----------------------------AMVLKIDEEDFGGH 105 (133)
Q Consensus 54 Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~----------------------------~~~~~~~~~~f~~~ 105 (133)
-|+.-++.-.++-++|-.=+.-.++|+++..+++.+-- ...+..|||+....
T Consensus 13 sq~~iilfSlvlsffp~~f~tf~ilyilf~~glsiVm~~RSnp~l~~~~s~~eI~~aR~LyEEK~a~eL~~kDee~l~E~ 92 (249)
T COG4920 13 SQLSIILFSLVLSFFPAEFFTFLILYILFFFGLSIVMGLRSNPYLKGVVSAQEISRARPLYEEKEANELLEKDEELLNEY 92 (249)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccCHHHHhhcchhHhhhhhHHHHHhhHHHHHHH
Confidence 35556666777777775555444555555444443331 12223344443333
Q ss_pred cchhhcchh---hhhhHHHHHHHHHh
Q 038479 106 GALLQEGLF---ASTTLFLLVWILVY 128 (133)
Q Consensus 106 ~el~~eG~~---~sl~~FvL~Wtl~Y 128 (133)
.+.....++ ..++-|++.|++..
T Consensus 93 ~~~~~~~f~~m~~ml~yfIll~~f~~ 118 (249)
T COG4920 93 KRFARASFMPMLTMLPYFILLATFLF 118 (249)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 344444443 45778999999754
No 49
>PRK11677 hypothetical protein; Provisional
Probab=25.14 E-value=57 Score=24.58 Aligned_cols=17 Identities=29% Similarity=0.853 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhhhhc
Q 038479 52 WIRQVVALVCGLLWGSI 68 (133)
Q Consensus 52 w~Rqi~ali~Gi~aGIL 68 (133)
|+=-++++++|++.|.+
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666666544
No 50
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.11 E-value=24 Score=23.64 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhc
Q 038479 57 VALVCGLLWGSI 68 (133)
Q Consensus 57 ~ali~Gi~aGIL 68 (133)
.++|+|+++|++
T Consensus 12 aavIaG~Vvgll 23 (64)
T PF01034_consen 12 AAVIAGGVVGLL 23 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 51
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=24.67 E-value=88 Score=18.92 Aligned_cols=27 Identities=22% Similarity=-0.014 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHH
Q 038479 54 RQVVALVCGLLWGSIPLVGGIWIVIFL 80 (133)
Q Consensus 54 Rqi~ali~Gi~aGILgLtG~~Gfl~F~ 80 (133)
||++.++.|-+.+..-..-++..+-|+
T Consensus 9 R~lmN~ll~Gava~~a~~~lyP~~~ff 35 (39)
T PF08802_consen 9 RQLMNLLLGGAVAVPAGGMLYPYVKFF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhhhheeEe
Confidence 777777665555444444444444444
No 52
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=24.05 E-value=4.5e+02 Score=22.53 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHhhhhCCCCCC-ChhhhhHHHHHHHHH
Q 038479 29 FKFAKLLDPDASW-DKDQLGDVLHWIRQV 56 (133)
Q Consensus 29 s~~~~a~~~~~~w-dKde~l~vi~w~Rqi 56 (133)
....|-+-.+.+| |.||+.|.+-=++..
T Consensus 17 ~~~~~~~V~~~~Wlt~~ef~~~~alaq~~ 45 (368)
T TIGR00937 17 GYMREELVDERQWMSEASYNDLVALAQFL 45 (368)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHcC
Confidence 4556666667899 999999999888754
No 53
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.88 E-value=3.2e+02 Score=20.52 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhc-----------c---chhhHHHHHHHHHHH--HHHHHHHHHHhcCCCCcccccc
Q 038479 43 KDQLGDVLHWIRQVVALVCGLLWGSI-----------P---LVGGIWIVIFLLISS--AIIYGYYAMVLKIDEEDFGGHG 106 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~Gi~aGIL-----------g---LtG~~Gfl~F~~~~~--~~~~~~~~~~~~~~~~~f~~~~ 106 (133)
+....+.+||.-|.+|+++|++.-.. . +-|+.|++.+++... +.....+ ....-.+.. +.
T Consensus 36 ~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f--~~P~~~~~~--r~ 111 (143)
T cd08763 36 TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFF--LFPGASFTL--RS 111 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCchHH--HH
Confidence 33446679999999999998875543 2 335566666655433 2222221 111111111 12
Q ss_pred chhhcchhhhhhHHHHHHHHHh
Q 038479 107 ALLQEGLFASTTLFLLVWILVY 128 (133)
Q Consensus 107 el~~eG~~~sl~~FvL~Wtl~Y 128 (133)
.+.-=..+.|...|++......
T Consensus 112 ~~~p~H~~~G~~~f~la~~t~~ 133 (143)
T cd08763 112 QYKPLHEFFGRALFLSSVGTSL 133 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 2221356688889998876543
No 54
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=23.31 E-value=62 Score=22.70 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=14.1
Q ss_pred CCCChhhhhHHHHHHH
Q 038479 39 ASWDKDQLGDVLHWIR 54 (133)
Q Consensus 39 ~~wdKde~l~vi~w~R 54 (133)
...+|.|++-++||+-
T Consensus 37 ~~~TKNelL~~vYWLE 52 (85)
T PF11313_consen 37 YDFTKNELLYTVYWLE 52 (85)
T ss_pred ccccHHHHHHHHHHHh
Confidence 5779999999999974
No 55
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=23.26 E-value=2.1e+02 Score=24.45 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHH---HHHHhcCCCCccccccc
Q 038479 56 VVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGY---YAMVLKIDEEDFGGHGA 107 (133)
Q Consensus 56 i~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~---~~~~~~~~~~~f~~~~e 107 (133)
+.-+.++++-|++..-.+.+|+.|+...+.++.++ ..+.|+.+.+--|+++|
T Consensus 229 ~~~~~~~~ai~~~~~~s~~~~~~F~~l~~~I~fvcp~~~I~~q~~k~~IhGpWDe 283 (292)
T KOG3059|consen 229 MVLVLASVAIIIIADISLLIFFVFLSLICFINFVCPYWLIRLQLYKNDIHGPWDE 283 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccc
Confidence 44556677777777777777777766666555443 44566666666666554
No 56
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=22.76 E-value=1.5e+02 Score=18.90 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=10.1
Q ss_pred CCCCC-ChhhhhHHHH
Q 038479 37 PDASW-DKDQLGDVLH 51 (133)
Q Consensus 37 ~~~~w-dKde~l~vi~ 51 (133)
.+-.| +|+|+.+.--
T Consensus 22 kkV~WPs~~e~~~~t~ 37 (64)
T PRK07597 22 KKVTWPTRKELVRSTI 37 (64)
T ss_pred hhCcCcCHHHHHhHHH
Confidence 35689 8988765443
No 57
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=3.9e+02 Score=21.12 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHH-HHhcCCCCccccccchhhcchhhhhhHHHHH
Q 038479 54 RQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYA-MVLKIDEEDFGGHGALLQEGLFASTTLFLLV 123 (133)
Q Consensus 54 Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~~~~~~~~~-~~~~~~~~~f~~~~el~~eG~~~sl~~FvL~ 123 (133)
-.++++++|+.+|.-+-.+...+.+.+++-.+++-+... ...+..++. |.+=....|+.+=++++++.
T Consensus 81 ~Gil~i~~gil~~~~~~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~--G~~w~ii~Gvl~ii~g~ill 149 (185)
T COG3247 81 SGILSILLGILAGFNPGLGALVLTYLIAIWFIASGILRIVVAFRLRSLP--GWWWMIISGVLGIIAGLILL 149 (185)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CcHHHHHHHHHHHHHHHHHH
Confidence 378889999999999987777766665554444433321 112222222 33334446666666665543
No 58
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.61 E-value=44 Score=20.21 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhh
Q 038479 55 QVVALVCGLLWGS 67 (133)
Q Consensus 55 qi~ali~Gi~aGI 67 (133)
+.+|++.|+++|+
T Consensus 4 s~IaIIv~V~vg~ 16 (38)
T PF02439_consen 4 STIAIIVAVVVGM 16 (38)
T ss_pred chhhHHHHHHHHH
Confidence 4567777777764
No 59
>PLN02351 cytochromes b561 family protein
Probab=22.34 E-value=4.5e+02 Score=21.76 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHhhhh---------hhc----cchhhHHHHHHHHHH
Q 038479 47 GDVLHWIRQVVALVCGLLW---------GSI----PLVGGIWIVIFLLIS 83 (133)
Q Consensus 47 l~vi~w~Rqi~ali~Gi~a---------GIL----gLtG~~Gfl~F~~~~ 83 (133)
.+.+||+-|.+|++++++. |++ .+-++.|+...++..
T Consensus 83 ~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~ 132 (242)
T PLN02351 83 KKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHSWMGLICVSLFG 132 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHH
Confidence 7899999999999998773 222 245566766655443
No 60
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=22.22 E-value=3.2e+02 Score=19.89 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=31.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhhhhhccchhh---HHHHHHHHHHHHHHHHH
Q 038479 42 DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGG---IWIVIFLLISSAIIYGY 90 (133)
Q Consensus 42 dKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~---~Gfl~F~~~~~~~~~~~ 90 (133)
+.++++.++-..+++..++.|+.++.+...-+ .+++..+++.+++.+++
T Consensus 51 ~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif 102 (183)
T PF01595_consen 51 RPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIF 102 (183)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 46888999999999999999988887732221 34444444444444433
No 61
>COG3766 Predicted membrane protein [Function unknown]
Probab=22.10 E-value=1.4e+02 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcch
Q 038479 70 LVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGL 113 (133)
Q Consensus 70 LtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG~ 113 (133)
.+++.-|+.|+.+..+...++...+.++.|.+ .||+.+||=
T Consensus 5 ~~~l~a~~~~~sv~~l~~i~F~~iy~~vTpyk---e~elIk~GN 45 (133)
T COG3766 5 LEGLLAFAAYFSVGVLMLILFLFIYEKVTPYK---EWELIKEGN 45 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHccC
Confidence 35667788888777766666666667765543 367888874
No 62
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=2.1e+02 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhh
Q 038479 49 VLHWIRQVVALVCGLLWGSIPLVGG 73 (133)
Q Consensus 49 vi~w~Rqi~ali~Gi~aGILgLtG~ 73 (133)
.+.-+-.++.++.|+=||++|++++
T Consensus 5 ~i~~~sllLvIiGalNWGLvG~f~f 29 (79)
T COG2155 5 IIRGLSLLLVILGALNWGLVGLFGF 29 (79)
T ss_pred HHHHHHHHHHHHhhhhhceeeeehh
Confidence 3444455678888999999999986
No 63
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=21.23 E-value=1.7e+02 Score=18.22 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=10.0
Q ss_pred CCCCC-ChhhhhHHH
Q 038479 37 PDASW-DKDQLGDVL 50 (133)
Q Consensus 37 ~~~~w-dKde~l~vi 50 (133)
.+-.| +|+|+.+.-
T Consensus 13 kkV~WPt~~e~~~~t 27 (55)
T TIGR00964 13 KKVVWPSRKELITYT 27 (55)
T ss_pred hcCcCcCHHHHHhHH
Confidence 35689 899887644
No 64
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=29 Score=31.78 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.1
Q ss_pred HHHhhhhCCCCCCChhhhhHHHHH
Q 038479 29 FKFAKLLDPDASWDKDQLGDVLHW 52 (133)
Q Consensus 29 s~~~~a~~~~~~wdKde~l~vi~w 52 (133)
|-+-|.+.||...||+|+..++.|
T Consensus 424 SGLlKLL~Pd~t~~kee~k~iley 447 (683)
T COG4930 424 SGLLKLLFPDKTFDKEELKTILEY 447 (683)
T ss_pred HHHHHHhCCCCCcCHHHHHHHHHH
Confidence 778899999999999999877665
No 65
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=20.94 E-value=5.6e+02 Score=22.32 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCCCChHHHhhhhCCCCCCChhhhhHHHHHHHHHH
Q 038479 23 GGHLSPFKFAKLLDPDASWDKDQLGDVLHWIRQVV 57 (133)
Q Consensus 23 ~~~~~~s~~~~a~~~~~~wdKde~l~vi~w~Rqi~ 57 (133)
||....-..-+...++.+-++||..-+.||.|.+-
T Consensus 107 GGA~fSAPmV~~~~~~~~ls~e~kt~iNywFRHiw 141 (385)
T PF04165_consen 107 GGALFSAPMVEEAAEKMGLSPEEKTFINYWFRHIW 141 (385)
T ss_pred CcceeehHHHHhhhhhccCCHHHHHHHHHHHHHHH
Confidence 34455455666667777889999999999999975
No 66
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.92 E-value=1.5e+02 Score=16.62 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhh
Q 038479 49 VLHWIRQVVALVCGLLWGSIPLVGG 73 (133)
Q Consensus 49 vi~w~Rqi~ali~Gi~aGILgLtG~ 73 (133)
...+++-.+++++++..=++.+||.
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~ 28 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGA 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766666666664
No 67
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.69 E-value=3.2e+02 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHhh-hhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccc--cccchhhcchhhhhh
Q 038479 56 VVALVCGL-LWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEE--DFG--GHGALLQEGLFASTT 118 (133)
Q Consensus 56 i~ali~Gi-~aGILgLtG~~Gfl~F~~~~~~~~~~~~~~~~~~~~~--~f~--~~~el~~eG~~~sl~ 118 (133)
+.++++|. +....|..++.-++.|++.+...+-+-+.+-.+.+++ +=+ +..+++-.|..+.+.
T Consensus 24 ~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~QVlaNg~~a~~~ 91 (226)
T PF01940_consen 24 LAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQVLANGGVAALC 91 (226)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHHhhhccHHHHHH
Confidence 34666666 5666666666667777777777776554433333332 212 344566666555443
No 68
>PHA02692 hypothetical protein; Provisional
Probab=20.22 E-value=2.4e+02 Score=19.20 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHH
Q 038479 44 DQLGDVLHWIRQVVA 58 (133)
Q Consensus 44 de~l~vi~w~Rqi~a 58 (133)
||+-+-|.-+|++++
T Consensus 18 dDF~~Fi~vVksVLt 32 (70)
T PHA02692 18 EDFEEFLNIVRTVMT 32 (70)
T ss_pred HHHHHHHHHHHHHHc
Confidence 445444555555543
No 69
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=20.08 E-value=1.8e+02 Score=17.76 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 038479 49 VLHWIRQVVALVCGLLWGS 67 (133)
Q Consensus 49 vi~w~Rqi~ali~Gi~aGI 67 (133)
++--+--+++++.|.++|.
T Consensus 8 a~iMVPVvma~ilglIyGl 26 (41)
T PF10766_consen 8 AVIMVPVVMALILGLIYGL 26 (41)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444566788888888875
Done!