Query 038479
Match_columns 133
No_of_seqs 119 out of 192
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 64.8 12 0.00042 23.6 4.6 45 29-84 13-57 (61)
2 2kxh_B Peptide of FAR upstream 53.2 6.1 0.00021 22.1 1.4 20 43-62 7-26 (31)
3 3j00_Z Cell division protein F 52.2 26 0.00088 23.9 4.8 40 73-112 4-43 (98)
4 1afo_A Glycophorin A; integral 46.9 8.1 0.00028 22.7 1.3 14 56-69 12-25 (40)
5 1rh5_B Preprotein translocase 46.2 25 0.00084 23.1 3.8 46 27-83 15-60 (74)
6 2ww9_B Protein transport prote 45.8 28 0.00095 23.2 4.0 43 29-82 30-72 (80)
7 2l2t_A Receptor tyrosine-prote 44.3 16 0.00056 21.7 2.4 13 57-69 10-22 (44)
8 2oy9_A UPF0223 protein BH2638; 43.7 16 0.00055 25.4 2.7 22 38-59 10-31 (98)
9 2ks1_B Epidermal growth factor 36.5 9.6 0.00033 22.7 0.5 11 58-68 12-22 (44)
10 1q90_G Cytochrome B6F complex 33.8 14 0.00047 21.4 0.9 14 58-71 4-17 (37)
11 3te3_A Polycystic kidney disea 31.3 64 0.0022 18.7 3.5 27 40-66 2-29 (39)
12 2l34_A TYRO protein tyrosine k 30.0 41 0.0014 18.7 2.4 24 58-81 7-30 (33)
13 2k9j_B Integrin beta-3; transm 26.2 1E+02 0.0034 17.8 4.3 13 56-68 9-21 (43)
14 4gif_A Polycystic kidney disea 25.6 89 0.003 18.6 3.5 27 40-66 2-29 (45)
15 1vf5_G Protein PET G; photosyn 22.9 15 0.00052 21.2 -0.3 14 58-71 4-17 (37)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=64.82 E-value=12 Score=23.59 Aligned_cols=45 Identities=13% Similarity=-0.082 Sum_probs=25.2
Q ss_pred HHHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHH
Q 038479 29 FKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISS 84 (133)
Q Consensus 29 s~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~ 84 (133)
..++|.++.-.+-|+||+..+. -+.|+...++ |+.||+++++...
T Consensus 13 kd~~rvlk~~~KPd~~Ef~~ia--------k~~~iG~~i~---G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 13 KESRRAFLVTKKPNWATYKRAA--------KITGLGIILI---GLIGMLIRIVGIL 57 (61)
T ss_dssp HHHTHHHHHSCCCCTTHHHHHH--------HHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3445555555666788876543 3333333333 6677777776543
No 2
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=53.20 E-value=6.1 Score=22.05 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHh
Q 038479 43 KDQLGDVLHWIRQVVALVCG 62 (133)
Q Consensus 43 Kde~l~vi~w~Rqi~ali~G 62 (133)
+|.+.|+++..||+.|=+-|
T Consensus 7 ~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999886654
No 3
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=52.23 E-value=26 Score=23.85 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhcc
Q 038479 73 GIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEG 112 (133)
Q Consensus 73 ~~Gfl~F~~~~~~~~~~~~~~~~~~~~~~f~~~~el~~eG 112 (133)
+.|.+||+++..++.+..+.-..-..++...+..++..+|
T Consensus 4 ~~G~~F~l~Vl~~l~~~~~~~~~Wl~~~~~~PI~~V~V~G 43 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKLVLTG 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSSSCCC
T ss_pred echhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEec
Confidence 3577788776665555554322222222233444444444
No 4
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=46.87 E-value=8.1 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhcc
Q 038479 56 VVALVCGLLWGSIP 69 (133)
Q Consensus 56 i~ali~Gi~aGILg 69 (133)
++.+++|+.|||+|
T Consensus 12 i~lII~~vmaGiIG 25 (40)
T 1afo_A 12 ITLIIFGVMAGVIG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56788999999876
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=46.21 E-value=25 Score=23.05 Aligned_cols=46 Identities=17% Similarity=-0.033 Sum_probs=28.2
Q ss_pred ChHHHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHH
Q 038479 27 SPFKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLIS 83 (133)
Q Consensus 27 ~~s~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~ 83 (133)
+...+.|.++.-.+-|+||+..+. -+.|+...++ |+.||+++++..
T Consensus 15 f~kd~~rvlk~~~KPdr~EF~~ia--------k~~~iG~~im---G~IGfiIkli~i 60 (74)
T 1rh5_B 15 FIEECRRVWLVLKKPTKDEYLAVA--------KVTALGISLL---GIIGYIIHVPAT 60 (74)
T ss_dssp HHHHHHHHHHSEECCCHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHHH
Confidence 334566667766777899987643 3444444444 566777776543
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=45.82 E-value=28 Score=23.21 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=25.7
Q ss_pred HHHhhhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHH
Q 038479 29 FKFAKLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLI 82 (133)
Q Consensus 29 s~~~~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~ 82 (133)
.-+.|.++.-.+-|+||+..+. -+.|+.-.++ |+.||+..++.
T Consensus 30 kd~~rvlk~~~KPdr~Ef~~ia--------k~t~iG~~im---G~IGfiIkLI~ 72 (80)
T 2ww9_B 30 REGTQFLAKCKKPDLKEYTKIV--------KAVGIGFIAV---GIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHSCCCCCHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHH
Confidence 4456777777778999987643 3444444444 44555555443
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.28 E-value=16 Score=21.71 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=7.5
Q ss_pred HHHHHhhhhhhcc
Q 038479 57 VALVCGLLWGSIP 69 (133)
Q Consensus 57 ~ali~Gi~aGILg 69 (133)
.+++.|++.|++.
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 4566666666554
No 8
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=43.70 E-value=16 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.575 Sum_probs=18.3
Q ss_pred CCCCChhhhhHHHHHHHHHHHH
Q 038479 38 DASWDKDQLGDVLHWIRQVVAL 59 (133)
Q Consensus 38 ~~~wdKde~l~vi~w~Rqi~al 59 (133)
+..|+.||+.+|+.....+-..
T Consensus 10 d~dWSteEii~Vi~F~~~VE~A 31 (98)
T 2oy9_A 10 SLDWSTEEVIDVVHFFQAIEQA 31 (98)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 3569999999999999887644
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.48 E-value=9.6 Score=22.68 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=4.9
Q ss_pred HHHHhhhhhhc
Q 038479 58 ALVCGLLWGSI 68 (133)
Q Consensus 58 ali~Gi~aGIL 68 (133)
+++.|++.|++
T Consensus 12 ~IA~gVVgGv~ 22 (44)
T 2ks1_B 12 SIATGMVGALL 22 (44)
T ss_dssp SSTHHHHHHHH
T ss_pred eEEeehhHHHH
Confidence 34444444443
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=33.81 E-value=14 Score=21.42 Aligned_cols=14 Identities=36% Similarity=1.073 Sum_probs=11.2
Q ss_pred HHHHhhhhhhccch
Q 038479 58 ALVCGLLWGSIPLV 71 (133)
Q Consensus 58 ali~Gi~aGILgLt 71 (133)
.+++|++-|.+|.|
T Consensus 4 ~lL~GIVlGlipvt 17 (37)
T 1q90_G 4 PLLCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888888876
No 11
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=31.27 E-value=64 Score=18.68 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=23.6
Q ss_pred CC-ChhhhhHHHHHHHHHHHHHHhhhhh
Q 038479 40 SW-DKDQLGDVLHWIRQVVALVCGLLWG 66 (133)
Q Consensus 40 ~w-dKde~l~vi~w~Rqi~ali~Gi~aG 66 (133)
.| +.|||......+.|+=..+.||+.=
T Consensus 2 ~~Vs~eeF~~L~rRVlqlE~~l~gI~S~ 29 (39)
T 3te3_A 2 GWVSGEEFYMLTRRVLQLETVLEGVVSQ 29 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58 9999999999999999999888753
No 12
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=30.03 E-value=41 Score=18.66 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=14.8
Q ss_pred HHHHhhhhhhccchhhHHHHHHHH
Q 038479 58 ALVCGLLWGSIPLVGGIWIVIFLL 81 (133)
Q Consensus 58 ali~Gi~aGILgLtG~~Gfl~F~~ 81 (133)
+.++|++-|-+-.|.+.+.++|+.
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhe
Confidence 345666666666666666666653
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.22 E-value=1e+02 Score=17.84 Aligned_cols=13 Identities=0% Similarity=0.248 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhc
Q 038479 56 VVALVCGLLWGSI 68 (133)
Q Consensus 56 i~ali~Gi~aGIL 68 (133)
+.+++.|+++|++
T Consensus 9 ~~~Iv~gvi~~iv 21 (43)
T 2k9j_B 9 ILVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHH
Confidence 5667777777765
No 14
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=25.60 E-value=89 Score=18.63 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=23.7
Q ss_pred CC-ChhhhhHHHHHHHHHHHHHHhhhhh
Q 038479 40 SW-DKDQLGDVLHWIRQVVALVCGLLWG 66 (133)
Q Consensus 40 ~w-dKde~l~vi~w~Rqi~ali~Gi~aG 66 (133)
.| +.|||......+.|+=..+.||+.=
T Consensus 2 ~~Vs~eeF~~L~rRVlqlE~~l~gI~S~ 29 (45)
T 4gif_A 2 GWVSGEEFYMLTRRVLQLETVLEGVVSQ 29 (45)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58 9999999999999999999888753
No 15
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=22.86 E-value=15 Score=21.21 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=7.3
Q ss_pred HHHHhhhhhhccch
Q 038479 58 ALVCGLLWGSIPLV 71 (133)
Q Consensus 58 ali~Gi~aGILgLt 71 (133)
.+++|++-|.+|.|
T Consensus 4 plL~GIVlGlipvt 17 (37)
T 1vf5_G 4 PLLDGLVLGLVFAT 17 (37)
T ss_dssp -----CHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888888866
Done!