Query 038479
Match_columns 133
No_of_seqs 119 out of 192
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 19:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 52.6 5.1 0.00037 26.4 3.0 19 111-129 66-84 (129)
2 d1q90g_ f.23.26.1 (G:) PetG su 47.8 3 0.00022 21.7 0.9 14 58-71 4-17 (30)
3 d2oy9a1 a.276.1.1 (A:6-90) Unc 47.4 6.3 0.00046 25.1 2.7 21 38-58 5-25 (85)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 42.5 12 0.00087 19.3 2.8 20 48-68 4-23 (32)
5 d1lfma_ a.3.1.1 (A:) Mitochond 32.2 7 0.00051 23.3 1.0 16 42-57 87-102 (103)
6 d1rh5b_ f.23.28.1 (B:) Preprot 25.6 41 0.003 19.5 3.6 41 33-84 10-50 (56)
7 d1ccra_ a.3.1.1 (A:) Mitochond 20.7 17 0.0012 23.0 1.2 16 42-57 95-110 (111)
8 d1wwva1 a.60.1.2 (A:8-85) Conn 20.0 29 0.0021 20.2 2.2 18 36-56 2-19 (78)
9 d1rh1a2 f.1.1.1 (A:313-511) Co 17.9 52 0.0038 23.6 3.5 23 56-78 151-174 (199)
10 d1c52a_ a.3.1.1 (A:) Cytochrom 14.9 38 0.0028 21.2 2.0 16 41-56 75-90 (131)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=52.60 E-value=5.1 Score=26.42 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=14.0
Q ss_pred cchhhhhhHHHHHHHHHhh
Q 038479 111 EGLFASTTLFLLVWILVYS 129 (133)
Q Consensus 111 eG~~~sl~~FvL~Wtl~Y~ 129 (133)
+.....+..|.++|.++|=
T Consensus 66 ~~~~~~~~~~~~~~~~~yH 84 (129)
T d1nekc_ 66 GSFFVKFIMWGILTALAYH 84 (129)
T ss_dssp TSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888773
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=47.78 E-value=3 Score=21.72 Aligned_cols=14 Identities=36% Similarity=1.073 Sum_probs=12.0
Q ss_pred HHHHhhhhhhccch
Q 038479 58 ALVCGLLWGSIPLV 71 (133)
Q Consensus 58 ali~Gi~aGILgLt 71 (133)
.+++|++-|++|.|
T Consensus 4 ~ll~GivlGlipiT 17 (30)
T d1q90g_ 4 PLLCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHH
Confidence 47899999999977
No 3
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=47.41 E-value=6.3 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.621 Sum_probs=18.0
Q ss_pred CCCCChhhhhHHHHHHHHHHH
Q 038479 38 DASWDKDQLGDVLHWIRQVVA 58 (133)
Q Consensus 38 ~~~wdKde~l~vi~w~Rqi~a 58 (133)
+.+|+.||+.+|+.....+-.
T Consensus 5 d~dWsteEii~V~~F~~~VE~ 25 (85)
T d2oy9a1 5 SLDWSTEEVIDVVHFFQAIEQ 25 (85)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 578999999999999887754
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=42.48 E-value=12 Score=19.27 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 038479 48 DVLHWIRQVVALVCGLLWGSI 68 (133)
Q Consensus 48 ~vi~w~Rqi~ali~Gi~aGIL 68 (133)
.+++|+ .++++.+|+..||+
T Consensus 4 gavfyi-vfialffgiavgii 23 (32)
T d2e74e1 4 GAVFYI-VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHH-HHHHHHHHHHHHHH
T ss_pred eeeHHH-HHHHHHHHHHhhhe
Confidence 344444 34566777766654
No 5
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=32.22 E-value=7 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=14.2
Q ss_pred ChhhhhHHHHHHHHHH
Q 038479 42 DKDQLGDVLHWIRQVV 57 (133)
Q Consensus 42 dKde~l~vi~w~Rqi~ 57 (133)
+.+|+.|+|.|+|+.+
T Consensus 87 s~~ei~dviAYLkt~s 102 (103)
T d1lfma_ 87 KKGERQDLVAYLKSAT 102 (103)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6789999999999875
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.65 E-value=41 Score=19.47 Aligned_cols=41 Identities=24% Similarity=0.095 Sum_probs=22.3
Q ss_pred hhhCCCCCCChhhhhHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHH
Q 038479 33 KLLDPDASWDKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISS 84 (133)
Q Consensus 33 ~a~~~~~~wdKde~l~vi~w~Rqi~ali~Gi~aGILgLtG~~Gfl~F~~~~~ 84 (133)
|.++.-.+-|+||+..+ |.++|+.-- +-|+.||+.|++...
T Consensus 10 Rvlk~~~KP~~~Ef~~i--------a~v~~iG~~---i~G~IGf~I~li~~~ 50 (56)
T d1rh5b_ 10 RVWLVLKKPTKDEYLAV--------AKVTALGIS---LLGIIGYIIHVPATY 50 (56)
T ss_dssp HHHHSEECCCHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444445578887543 334443332 456677777776544
No 7
>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}
Probab=20.69 E-value=17 Score=22.96 Aligned_cols=16 Identities=6% Similarity=0.445 Sum_probs=13.5
Q ss_pred ChhhhhHHHHHHHHHH
Q 038479 42 DKDQLGDVLHWIRQVV 57 (133)
Q Consensus 42 dKde~l~vi~w~Rqi~ 57 (133)
+.+|+.|+|.|+|+.+
T Consensus 95 ~~~d~~dliaYLk~~t 110 (111)
T d1ccra_ 95 KPQERADLISYLKEAT 110 (111)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5678999999999865
No 8
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.01 E-value=29 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.898 Sum_probs=13.3
Q ss_pred CCCCCCChhhhhHHHHHHHHH
Q 038479 36 DPDASWDKDQLGDVLHWIRQV 56 (133)
Q Consensus 36 ~~~~~wdKde~l~vi~w~Rqi 56 (133)
.|=++|+.|| |..|++.+
T Consensus 2 epv~~Wt~~~---V~~WL~~~ 19 (78)
T d1wwva1 2 EPVETWTPGK---VATWLRGL 19 (78)
T ss_dssp CCTTTCCTTT---HHHHHHHH
T ss_pred CChhhCCHHH---HHHHHHHc
Confidence 4668998877 66888763
No 9
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.92 E-value=52 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=13.7
Q ss_pred HHHHHHhhhhhhccch-hhHHHHH
Q 038479 56 VVALVCGLLWGSIPLV-GGIWIVI 78 (133)
Q Consensus 56 i~ali~Gi~aGILgLt-G~~Gfl~ 78 (133)
+.|+++|...|++|+. +..|++-
T Consensus 151 ~fs~~~g~~~~~~g~~~t~vgi~g 174 (199)
T d1rh1a2 151 LFSLTLGSALIAFGLSATVVGFVG 174 (199)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHH
Confidence 4566667777777775 3344444
No 10
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=14.87 E-value=38 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=14.3
Q ss_pred CChhhhhHHHHHHHHH
Q 038479 41 WDKDQLGDVLHWIRQV 56 (133)
Q Consensus 41 wdKde~l~vi~w~Rqi 56 (133)
-+.+|+.+++.|+|+.
T Consensus 75 LsD~eI~av~~YIr~~ 90 (131)
T d1c52a_ 75 LKDEEIAAVLNHIATA 90 (131)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4899999999999984
Done!