BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038480
(850 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 546 QLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQ--------LISSFSDLRV 597
Q P + +L LQ+ + + ELP+ + L+ L + I+S + LR
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRE 154
Query: 598 LRMLDCG-FTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQ 656
L + C T P P S G + L+NL+ L + +RS A S LQ
Sbjct: 155 LSIRACPELTELPEPLASTDASGEH---QGLVNLQSLRLEWTGIRSLPA-----SIANLQ 206
Query: 657 SSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQ 716
+ KSL++R S +L + + L L++LD C+ L NY + R P L+
Sbjct: 207 -NLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCTALR--NYPPIFGGRAP-----LK 256
Query: 717 RVTIDCCKKL 726
R+ + C L
Sbjct: 257 RLILKDCSNL 266
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 255 ENASKVVFTTRLVDVC-SLMGAQKKFKIECL--RDK--EAWELFLEKVGEEPLVSHPDIP 309
+N +++ TTR V S+MG + +E R+K E LF+ E D+P
Sbjct: 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-------DLP 307
Query: 310 MLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLR 350
A ++ KEC G PL + IG + ++ P W Y + L+
Sbjct: 308 AEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 346
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQL 547
R ++L NK+ +S +L L L N+L ++ + FD + +L+ L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK-ELVLVENQLQSL 124
Query: 548 PSEI-SKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVL 598
P + KL +L YLNL+ ++ LP K + + K NL +L S++ L+ L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLP---KGVFD-KLTNLTELDLSYNQLQSL 172
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 255 ENASKVVFTTRLVDVC-SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQ 313
++ +++ TTR V S+MG + +E KE LE + + D+P A
Sbjct: 261 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKG---LEILSLFVNMKKADLPEQAH 317
Query: 314 AMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLR 350
++ KEC G PL + IG + ++ P W Y ++ L+
Sbjct: 318 SIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 352
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 255 ENASKVVFTTRLVDVC-SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQ 313
++ +++ TTR V S+MG + +E KE LE + + D+P A
Sbjct: 255 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKG---LEILSLFVNMKKADLPEQAH 311
Query: 314 AMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLR 350
++ KEC G PL + IG + ++ P W Y ++ L+
Sbjct: 312 SIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 307 DIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLR 350
D+P A ++ KEC G PL + IG + ++ P W Y + L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 353
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 512 LFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQLPSEI-SKLVSLQYLNLSETSIKEL 570
L L N L ++ + FD + SL LP+ + +KL SL YLNLS ++ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSL-TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 571 PNEL-KALTNLK--CWNLEQLIS 590
PN + LT LK N QL S
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQS 114
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 512 LFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQLP-SEISKLVSLQYLNLSETSIKEL 570
L+L N +++I S F+ +PSLR + + LV+L+YLNL ++K++
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI 171
Query: 571 PNELKALTNLK 581
PN L AL L+
Sbjct: 172 PN-LTALVRLE 181
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 512 LFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQLP-SEISKLVSLQYLNLSETSIKEL 570
L+L N +++I S F+ +PSLR + + LV+L+YLNL ++K++
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI 171
Query: 571 PNELKALTNLK 581
PN L AL L+
Sbjct: 172 PN-LTALVRLE 181
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 50/304 (16%)
Query: 488 RRISLLRNKIVALSETPTC----PHLVTLFLAINKLDTITSNFFDFMPSLRVXXXXXXXX 543
+ +SL N+++A SE+ +L L L+ N L + + F ++PSLR
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 544 XXQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDC 603
P L +L+YL+L K+ L + N+ + SF L+ L L+
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQ-SVSLASHPNIDDF-------SFQWLKYLEYLNM 336
Query: 604 GFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKL---QSSTK 660
P + + G L++LK+L + ++F +LQ L + + S
Sbjct: 337 DDNNIPSTKSNTFTG--------LVSLKYLSL----SKTFTSLQTLTNETFVSLAHSPLL 384
Query: 661 SLQLRECKDSKSLN--ISYLADLKHLDKLDFAYCSNLEEFNYVELR-TAREPYGFDSLQR 717
+L L + SK N S+L L+ LD N +E + + +E G ++
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDL----------GLNEIEQKLSGQEWRGLRNIFE 434
Query: 718 VTIDCCKKLK-EVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQ 776
+ + K L+ + A P+L+ + + R + IS +PF L+ L +
Sbjct: 435 IYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISP---------SPFRPLRNLTIL 485
Query: 777 DLSN 780
DLSN
Sbjct: 486 DLSN 489
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQL 547
R ++L NK+ +S +L L L N+L ++ + FD + +L+ L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK-ELVLVENQLQSL 124
Query: 548 PSEI-SKLVSLQYLNLSETSIKELPNEL-KALTNLKCWNLE 586
P + KL +L YL L ++ LP + LTNL +L+
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 22/132 (16%)
Query: 550 EISKLVSLQYLNLSETSIKELPNELKALTNLKC--WNLEQLISSFSDLRVLRMLDCGFTA 607
E+ + + L+ N + + +KEL L N + LE L F +L L ++ G T+
Sbjct: 2 EMGRRIHLELRNRTPSDVKEL-----VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS 56
Query: 608 DPVP-----------EDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQ 656
D+ + GG E+L E+ NL HL++ ++ ++ L L
Sbjct: 57 IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL- 115
Query: 657 SSTKSLQLRECK 668
KSL L C+
Sbjct: 116 ---KSLDLFNCE 124
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 550 EISKLVSLQYLNLSETSIKELPNELKALTNLKCWN--LEQLISSFSDLRVLRMLDCGFTA 607
++ + + L+ N + +++EL L N K + +E L + F +L L +++ G +
Sbjct: 9 DMKRRIHLELRNRTPAAVREL-----VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63
Query: 608 ------------DPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKL 655
+ E+ + FGG ++L E+L NL HL++ L+ L+ L K
Sbjct: 64 VSNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL----KK 118
Query: 656 QSSTKSLQLRECK-----DSKSLNISYLADLKHLDKLD 688
KSL L C+ D + L L +LD D
Sbjct: 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 472 GVQLSIAP-EVRKWRDRRRISLLRNKIVALSETP--TCPHLVTLFLAINKLDTITSNFFD 528
G Q ++ P E+ ++ I L N+I LS L+TL L+ N+L I FD
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 529 FMPSLRV 535
+ SLR+
Sbjct: 100 GLKSLRL 106
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 550 EISKLVSLQYLNLSETSIKELPNELKALTNLKC--WNLEQLISSFSDLRVLRMLDCGFTA 607
E+ K + L+ N + + +KEL L N K +E L F +L L ++ G T+
Sbjct: 7 EMDKRIYLELRNRTPSDVKEL-----VLDNCKSIEGKIEGLTDEFEELEFLSTINVGLTS 61
Query: 608 DPVP-----------EDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQ 656
++ + G E+L E+ NLKHL++ ++ ++ L K
Sbjct: 62 ISNLPKLNKLKKLELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPL----KKL 117
Query: 657 SSTKSLQLRECK 668
+ KSL L C+
Sbjct: 118 ENLKSLDLFNCE 129
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXX 545
D R ++ V LS+ L L+L N +++I S F+ +PSLR
Sbjct: 121 DNRLTTIPNGAFVYLSK------LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 546 QLP-SEISKLVSLQYLNLSETSIKELPN 572
+ L +L+YLNL+ +++E+PN
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPN 202
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 508 HLVTLFLAINKLDTITSNFFDFMPSLRVXXXXXXXXXXQLPSEI-SKLVSLQYLNLSETS 566
+L L+L N+L + FD + L V LPS + +LV L+ L +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNK 123
Query: 567 IKELPNELKALTNLKCWNLEQ 587
+ ELP ++ LT+L L+Q
Sbjct: 124 LTELPRGIERLTHLTHLALDQ 144
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 512 LFLAINKLDTITSNFFDFMPSL-RVXXXXXXXXXXQLPSEISKLVSLQYLNLSETSIKEL 570
L+L N +++I S F+ +PSL R+ L +L+YLNL +IK++
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211
Query: 571 PNELKALTNLKCWNLEQLISSFSDLR 596
PN L L L+ LE + F ++R
Sbjct: 212 PN-LTPLVGLE--ELEMSGNHFPEIR 234
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 522 ITSNFF--DFMPSLRVXXXXXXXXXXQLPSEISKLVSLQYLNLSETSIKELPNELKALTN 579
I++N F DF+ L + +LP+EI L +L+ L+LS + LP EL +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 580 LKCW 583
LK +
Sbjct: 295 LKYF 298
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 36/166 (21%)
Query: 557 LQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVL 616
LQ L+L+ T + ELP+ L L+ LK +L+ S + L C +A P + L
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLK-----KLVLSANKFENL----CQISASNFPSLTHL 330
Query: 617 F--GGSEIL------VEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECK 668
G ++ L +E L NL+ LD+ + + S +LQLR
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIET--------------SDCCNLQLRNLS 376
Query: 669 DSKSLNISYLADLKHLDKLDFAYCSNLE----EFNYVELRTAREPY 710
+SLN+SY L L F C LE F ++++ A+ P+
Sbjct: 377 HLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,417,947
Number of Sequences: 62578
Number of extensions: 935675
Number of successful extensions: 2085
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 49
length of query: 850
length of database: 14,973,337
effective HSP length: 107
effective length of query: 743
effective length of database: 8,277,491
effective search space: 6150175813
effective search space used: 6150175813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)