Query 038480
Match_columns 850
No_of_seqs 502 out of 3971
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.9E-99 2E-103 873.5 51.7 819 7-843 18-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-63 9.9E-68 608.7 52.8 633 130-811 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-45 5.7E-50 388.2 17.0 277 135-413 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.9E-21 1.1E-25 237.3 16.9 297 483-803 116-439 (968)
5 PLN00113 leucine-rich repeat r 99.8 2.9E-20 6.3E-25 230.3 17.8 305 480-810 159-493 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1E-22 2.2E-27 214.1 -3.5 284 485-806 78-376 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.9E-21 4E-26 203.8 3.2 328 474-836 113-465 (873)
8 KOG0444 Cytoskeletal regulator 99.8 4.9E-22 1.1E-26 209.0 -4.8 319 466-823 35-368 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.1E-20 4.6E-25 195.9 2.7 300 480-814 97-413 (873)
10 PLN03210 Resistant to P. syrin 99.8 3.9E-18 8.5E-23 211.3 20.9 311 472-808 598-946 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.9E-20 4.2E-25 188.0 -4.3 303 476-803 197-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 4.9E-17 1.1E-21 163.8 -7.7 258 486-785 46-313 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 5.5E-14 1.2E-18 161.6 15.5 248 466-779 204-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 7.1E-14 1.5E-18 160.7 14.2 250 486-803 202-456 (788)
15 KOG0618 Serine/threonine phosp 99.5 1.4E-15 2.9E-20 169.0 -1.7 88 485-574 45-133 (1081)
16 KOG4658 Apoptotic ATPase [Sign 99.4 1.5E-13 3.2E-18 161.8 7.7 318 474-827 534-877 (889)
17 PRK04841 transcriptional regul 99.4 2.4E-11 5.1E-16 150.2 26.9 287 129-457 13-332 (903)
18 KOG0617 Ras suppressor protein 99.4 3.6E-15 7.8E-20 133.1 -5.7 153 477-646 25-188 (264)
19 KOG0618 Serine/threonine phosp 99.4 1.9E-14 4.2E-19 159.9 -2.4 276 486-800 220-505 (1081)
20 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.8E-17 151.6 9.7 227 486-779 200-426 (754)
21 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.7E-19 129.7 -5.6 132 497-645 23-164 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 3.9E-12 8.4E-17 147.6 12.5 215 471-747 207-426 (754)
23 PRK00411 cdc6 cell division co 99.3 7.2E-10 1.6E-14 122.8 24.3 291 129-437 29-357 (394)
24 TIGR03015 pepcterm_ATPase puta 99.3 1.2E-09 2.5E-14 114.4 24.5 180 149-333 41-242 (269)
25 PF01637 Arch_ATPase: Archaeal 99.2 3.9E-11 8.5E-16 122.8 10.6 190 132-328 1-233 (234)
26 KOG4237 Extracellular matrix p 99.2 6.2E-13 1.3E-17 134.5 -3.0 283 472-777 55-355 (498)
27 TIGR02928 orc1/cdc6 family rep 99.2 8.6E-09 1.9E-13 113.0 28.1 292 130-438 15-350 (365)
28 COG2909 MalT ATP-dependent tra 99.2 3E-09 6.4E-14 119.1 21.5 286 131-457 20-338 (894)
29 KOG4237 Extracellular matrix p 99.1 2.2E-12 4.8E-17 130.6 -4.3 272 495-800 56-354 (498)
30 TIGR00635 ruvB Holliday juncti 99.1 3.2E-08 7E-13 105.4 23.9 261 131-438 5-289 (305)
31 cd00116 LRR_RI Leucine-rich re 99.0 5.2E-11 1.1E-15 128.2 1.0 217 504-747 20-261 (319)
32 PRK00080 ruvB Holliday junctio 99.0 5.8E-08 1.3E-12 104.1 24.0 270 130-438 25-310 (328)
33 PF05729 NACHT: NACHT domain 99.0 2E-09 4.3E-14 103.6 10.9 141 152-297 1-163 (166)
34 cd00116 LRR_RI Leucine-rich re 99.0 2.1E-10 4.6E-15 123.5 3.7 267 483-778 21-317 (319)
35 PF14580 LRR_9: Leucine-rich r 98.9 8.4E-10 1.8E-14 104.3 4.7 135 478-639 12-148 (175)
36 KOG3207 Beta-tubulin folding c 98.9 3.8E-10 8.2E-15 116.3 1.4 215 503-747 117-337 (505)
37 COG3899 Predicted ATPase [Gene 98.9 4.4E-08 9.5E-13 116.5 18.1 302 132-455 2-384 (849)
38 COG2256 MGS1 ATPase related to 98.9 2E-07 4.4E-12 96.2 20.1 218 131-377 31-266 (436)
39 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.7E-14 100.1 6.0 115 470-585 26-147 (175)
40 PTZ00112 origin recognition co 98.8 7.4E-07 1.6E-11 101.1 23.3 202 129-333 754-986 (1164)
41 KOG2028 ATPase related to the 98.8 8.8E-07 1.9E-11 89.5 20.5 162 142-324 153-331 (554)
42 PRK06893 DNA replication initi 98.7 5.6E-08 1.2E-12 98.1 10.5 151 150-329 38-203 (229)
43 PRK13342 recombination factor 98.7 9.3E-07 2E-11 97.8 20.7 175 131-331 13-198 (413)
44 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.4E-07 2.9E-12 95.9 12.4 168 135-331 22-203 (226)
45 PRK04195 replication factor C 98.7 2E-06 4.4E-11 97.1 21.5 242 130-413 14-272 (482)
46 KOG3207 Beta-tubulin folding c 98.6 9E-09 1.9E-13 106.3 0.4 150 483-646 119-286 (505)
47 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 100.5 -0.1 123 481-607 280-413 (490)
48 PF13173 AAA_14: AAA domain 98.6 1.3E-07 2.7E-12 86.2 6.8 120 151-289 2-127 (128)
49 PRK07003 DNA polymerase III su 98.6 3.4E-06 7.3E-11 95.5 19.3 182 131-331 17-223 (830)
50 KOG0532 Leucine-rich repeat (L 98.6 3.7E-09 8E-14 112.4 -3.8 165 484-667 97-270 (722)
51 COG1474 CDC6 Cdc6-related prot 98.6 4.4E-06 9.5E-11 89.5 19.3 198 130-330 17-239 (366)
52 TIGR02903 spore_lon_C ATP-depe 98.5 1.9E-05 4.1E-10 91.1 25.6 197 130-330 154-396 (615)
53 KOG4341 F-box protein containi 98.5 3.4E-09 7.4E-14 108.8 -4.5 285 486-807 139-441 (483)
54 KOG0532 Leucine-rich repeat (L 98.5 6.9E-09 1.5E-13 110.4 -3.4 186 484-692 74-270 (722)
55 PRK14960 DNA polymerase III su 98.5 6.4E-06 1.4E-10 92.3 19.4 180 130-328 15-218 (702)
56 KOG4341 F-box protein containi 98.5 9.4E-09 2E-13 105.6 -2.6 290 507-832 138-444 (483)
57 PRK08727 hypothetical protein; 98.5 1.4E-06 3.1E-11 88.1 13.2 167 131-326 21-201 (233)
58 PF13855 LRR_8: Leucine rich r 98.5 9.9E-08 2.2E-12 73.9 3.5 60 507-567 1-61 (61)
59 PTZ00202 tuzin; Provisional 98.5 8.1E-06 1.8E-10 86.1 18.2 160 128-297 260-434 (550)
60 PRK12402 replication factor C 98.5 1.8E-06 3.9E-11 93.6 14.0 194 130-328 15-225 (337)
61 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.5E-11 82.3 11.0 123 133-268 1-131 (151)
62 PRK14949 DNA polymerase III su 98.5 3.8E-06 8.3E-11 97.0 16.9 181 130-329 16-220 (944)
63 PRK05564 DNA polymerase III su 98.4 4.5E-06 9.7E-11 88.9 15.9 176 131-328 5-189 (313)
64 PRK14961 DNA polymerase III su 98.4 6.1E-06 1.3E-10 89.5 17.1 179 130-327 16-218 (363)
65 KOG1259 Nischarin, modulator o 98.4 5.6E-08 1.2E-12 95.4 1.1 101 530-648 283-391 (490)
66 PRK08084 DNA replication initi 98.4 2.8E-06 6.1E-11 86.1 12.5 170 130-328 23-208 (235)
67 PF13401 AAA_22: AAA domain; P 98.4 6.3E-07 1.4E-11 82.2 6.9 114 151-266 4-125 (131)
68 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.7E-12 101.9 5.7 102 483-586 114-217 (394)
69 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3.1E-13 99.5 -4.2 135 657-803 234-374 (419)
70 PRK00440 rfc replication facto 98.4 9.2E-06 2E-10 87.3 16.9 179 131-327 18-201 (319)
71 PLN03025 replication factor C 98.4 6.4E-06 1.4E-10 87.9 15.3 180 131-327 14-198 (319)
72 PRK14963 DNA polymerase III su 98.4 9.2E-06 2E-10 91.0 16.6 190 131-326 15-214 (504)
73 cd01128 rho_factor Transcripti 98.4 8.7E-07 1.9E-11 89.5 7.4 90 149-240 14-114 (249)
74 PRK12323 DNA polymerase III su 98.3 7.6E-06 1.7E-10 91.5 15.3 177 131-329 17-225 (700)
75 PF05496 RuvB_N: Holliday junc 98.3 7.2E-06 1.6E-10 79.4 12.8 174 130-333 24-225 (233)
76 PRK14956 DNA polymerase III su 98.3 6.3E-06 1.4E-10 89.9 13.8 191 130-327 18-220 (484)
77 COG4886 Leucine-rich repeat (L 98.3 3.6E-07 7.9E-12 101.3 4.5 195 490-730 98-294 (394)
78 PRK14957 DNA polymerase III su 98.3 1.5E-05 3.2E-10 89.5 16.5 182 131-331 17-223 (546)
79 PRK06645 DNA polymerase III su 98.3 2.1E-05 4.6E-10 87.7 17.6 188 131-326 22-226 (507)
80 PRK13341 recombination factor 98.3 3.4E-05 7.3E-10 89.9 19.5 170 131-326 29-214 (725)
81 PRK09087 hypothetical protein; 98.3 8.7E-06 1.9E-10 81.6 12.3 141 150-328 43-194 (226)
82 PRK14962 DNA polymerase III su 98.3 2E-05 4.4E-10 87.5 16.3 185 130-333 14-223 (472)
83 PRK07994 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.5 14.9 189 130-330 16-221 (647)
84 PRK05896 DNA polymerase III su 98.2 2.3E-05 5E-10 87.9 15.7 183 130-331 16-223 (605)
85 PRK14951 DNA polymerase III su 98.2 2.5E-05 5.5E-10 88.8 15.8 190 131-329 17-225 (618)
86 COG2255 RuvB Holliday junction 98.2 5.3E-05 1.2E-09 74.9 15.7 173 130-332 26-226 (332)
87 PRK08903 DnaA regulatory inact 98.2 1.5E-05 3.3E-10 80.7 12.7 168 133-333 22-203 (227)
88 PRK07471 DNA polymerase III su 98.2 5.1E-05 1.1E-09 81.6 17.2 188 130-330 19-239 (365)
89 PF14516 AAA_35: AAA-like doma 98.2 0.00028 6.1E-09 75.4 22.8 197 129-336 10-246 (331)
90 KOG1909 Ran GTPase-activating 98.2 4.3E-07 9.4E-12 91.7 1.2 153 527-692 88-251 (382)
91 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.9E-10 87.2 12.9 170 130-323 122-328 (364)
92 PRK05642 DNA replication initi 98.2 1.5E-05 3.3E-10 80.6 12.4 148 152-328 46-207 (234)
93 PRK14958 DNA polymerase III su 98.2 2.6E-05 5.6E-10 87.7 15.3 179 131-328 17-219 (509)
94 PRK08691 DNA polymerase III su 98.2 2.7E-05 5.8E-10 88.4 15.1 181 130-329 16-220 (709)
95 PF13191 AAA_16: AAA ATPase do 98.2 2.2E-06 4.8E-11 83.9 5.9 44 132-175 2-48 (185)
96 PRK14964 DNA polymerase III su 98.2 4.9E-05 1.1E-09 84.1 16.4 179 130-326 13-214 (491)
97 TIGR02397 dnaX_nterm DNA polym 98.2 6.2E-05 1.3E-09 82.2 17.3 182 130-330 14-219 (355)
98 PRK07940 DNA polymerase III su 98.2 6.6E-05 1.4E-09 81.4 17.0 172 130-329 5-213 (394)
99 PRK14959 DNA polymerase III su 98.2 0.00011 2.5E-09 83.0 19.3 184 131-333 17-225 (624)
100 KOG2120 SCF ubiquitin ligase, 98.2 1.6E-07 3.4E-12 92.4 -2.9 62 711-779 311-374 (419)
101 PRK09376 rho transcription ter 98.1 6.8E-06 1.5E-10 86.4 8.8 97 141-239 158-266 (416)
102 COG3903 Predicted ATPase [Gene 98.1 3.2E-06 6.9E-11 88.2 6.2 288 150-455 13-312 (414)
103 TIGR00678 holB DNA polymerase 98.1 6.4E-05 1.4E-09 73.6 15.2 160 141-325 3-187 (188)
104 PF00308 Bac_DnaA: Bacterial d 98.1 2E-05 4.2E-10 78.8 11.5 158 151-326 34-205 (219)
105 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5.1E-11 66.2 3.7 57 485-541 1-59 (61)
106 PRK14955 DNA polymerase III su 98.1 3.8E-05 8.3E-10 84.4 14.6 193 130-327 16-226 (397)
107 PRK14969 DNA polymerase III su 98.1 5E-05 1.1E-09 86.0 15.4 179 130-326 16-217 (527)
108 PLN03150 hypothetical protein; 98.1 5.9E-06 1.3E-10 96.2 7.9 89 487-575 420-511 (623)
109 PRK09112 DNA polymerase III su 98.1 1.1E-05 2.4E-10 86.2 9.2 192 130-330 23-241 (351)
110 KOG2982 Uncharacterized conser 98.1 2.3E-06 5.1E-11 84.3 3.6 218 489-742 49-285 (418)
111 PRK09111 DNA polymerase III su 98.1 8E-05 1.7E-09 85.0 15.9 192 130-330 24-234 (598)
112 PRK14952 DNA polymerase III su 98.0 0.00014 3.1E-09 82.5 17.4 184 130-333 13-224 (584)
113 PRK03992 proteasome-activating 98.0 9E-05 2E-09 81.1 15.4 170 130-323 131-337 (389)
114 PRK14970 DNA polymerase III su 98.0 0.00012 2.7E-09 80.0 16.5 183 131-331 18-212 (367)
115 PF05621 TniB: Bacterial TniB 98.0 0.00017 3.6E-09 73.5 15.8 179 150-329 60-261 (302)
116 KOG2227 Pre-initiation complex 98.0 0.00052 1.1E-08 72.7 19.4 194 129-327 149-366 (529)
117 PRK07764 DNA polymerase III su 98.0 0.00014 3E-09 86.0 17.0 177 131-326 16-218 (824)
118 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 58.3 3.7 40 531-571 1-40 (44)
119 PRK14087 dnaA chromosomal repl 98.0 6.6E-05 1.4E-09 83.4 13.4 166 151-330 141-320 (450)
120 PRK14954 DNA polymerase III su 98.0 0.00019 4.1E-09 82.1 17.2 196 130-329 16-229 (620)
121 KOG0531 Protein phosphatase 1, 98.0 1.6E-06 3.4E-11 96.4 -0.1 102 481-586 91-194 (414)
122 KOG0989 Replication factor C, 97.9 6.9E-05 1.5E-09 74.9 11.1 189 130-331 36-233 (346)
123 PRK14971 DNA polymerase III su 97.9 0.00019 4.2E-09 82.6 16.4 178 130-326 17-219 (614)
124 TIGR02881 spore_V_K stage V sp 97.9 8.1E-05 1.8E-09 77.0 12.2 155 131-300 7-194 (261)
125 PRK06305 DNA polymerase III su 97.9 0.00028 6.1E-09 78.4 17.1 182 130-330 17-224 (451)
126 PRK14950 DNA polymerase III su 97.9 0.00025 5.4E-09 81.9 17.3 188 130-328 16-220 (585)
127 CHL00181 cbbX CbbX; Provisiona 97.9 0.00019 4.1E-09 74.7 14.8 133 153-300 61-212 (287)
128 PRK08451 DNA polymerase III su 97.9 0.00027 5.8E-09 79.1 16.7 182 130-330 14-219 (535)
129 PRK07133 DNA polymerase III su 97.9 0.00027 5.9E-09 81.2 17.0 173 131-327 19-217 (725)
130 PLN03150 hypothetical protein; 97.9 1.8E-05 3.9E-10 92.2 7.5 79 508-586 419-498 (623)
131 KOG1859 Leucine-rich repeat pr 97.9 4.6E-07 1E-11 99.3 -5.2 129 472-604 96-265 (1096)
132 TIGR02880 cbbX_cfxQ probable R 97.9 0.0002 4.2E-09 74.8 14.3 132 153-299 60-210 (284)
133 TIGR00767 rho transcription te 97.9 4.9E-05 1.1E-09 80.6 9.7 90 149-240 166-266 (415)
134 PRK11331 5-methylcytosine-spec 97.9 0.00014 3.1E-09 78.5 13.4 106 130-240 175-283 (459)
135 PRK06620 hypothetical protein; 97.9 5.4E-05 1.2E-09 75.2 9.5 133 152-326 45-186 (214)
136 KOG0531 Protein phosphatase 1, 97.9 2.3E-06 5E-11 95.1 -0.4 84 484-570 71-155 (414)
137 TIGR00362 DnaA chromosomal rep 97.9 0.00025 5.4E-09 78.6 15.3 158 151-326 136-307 (405)
138 PRK14953 DNA polymerase III su 97.9 0.0005 1.1E-08 76.9 17.7 177 131-330 17-221 (486)
139 PTZ00361 26 proteosome regulat 97.9 0.00014 3.1E-09 79.6 12.7 170 131-323 184-389 (438)
140 PRK14948 DNA polymerase III su 97.8 0.00044 9.5E-09 79.7 17.0 189 131-329 17-222 (620)
141 PRK14088 dnaA chromosomal repl 97.8 0.00017 3.7E-09 80.0 12.9 158 151-326 130-302 (440)
142 PTZ00454 26S protease regulato 97.8 0.00034 7.4E-09 76.1 14.8 170 131-323 146-351 (398)
143 KOG1644 U2-associated snRNP A' 97.8 2.3E-05 5.1E-10 73.3 4.8 85 486-571 43-129 (233)
144 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0002 4.3E-09 85.8 13.7 179 130-322 187-389 (852)
145 KOG4579 Leucine-rich repeat (L 97.8 2.4E-06 5.2E-11 74.5 -2.0 100 486-586 28-131 (177)
146 PHA02544 44 clamp loader, smal 97.8 0.00027 5.9E-09 75.7 13.1 145 130-295 21-171 (316)
147 KOG1909 Ran GTPase-activating 97.8 1.6E-05 3.6E-10 80.5 3.3 122 483-605 90-253 (382)
148 PRK12422 chromosomal replicati 97.8 0.00052 1.1E-08 76.0 15.2 151 152-322 142-306 (445)
149 TIGR02639 ClpA ATP-dependent C 97.8 0.00017 3.7E-09 85.7 12.2 154 131-297 183-358 (731)
150 PRK00149 dnaA chromosomal repl 97.7 0.00027 5.9E-09 79.3 12.9 158 151-326 148-319 (450)
151 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 92.3 3.0 80 486-567 123-207 (699)
152 PRK06647 DNA polymerase III su 97.7 0.0012 2.6E-08 75.2 18.0 176 130-329 16-220 (563)
153 PF05673 DUF815: Protein of un 97.7 0.00079 1.7E-08 66.4 14.2 46 130-175 27-76 (249)
154 KOG2543 Origin recognition com 97.7 0.00024 5.2E-09 73.3 10.5 162 129-296 5-192 (438)
155 PRK14965 DNA polymerase III su 97.7 0.0006 1.3E-08 78.3 15.0 183 130-331 16-223 (576)
156 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3E-11 95.7 -6.0 119 483-606 162-292 (1096)
157 PRK07399 DNA polymerase III su 97.6 0.0024 5.2E-08 67.4 17.6 192 131-329 5-221 (314)
158 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 76.6 9.0 61 627-696 48-108 (426)
159 PRK15386 type III secretion pr 97.6 0.00017 3.7E-09 77.0 8.5 70 657-745 52-121 (426)
160 PRK11034 clpA ATP-dependent Cl 97.6 0.00055 1.2E-08 80.4 13.4 155 131-297 187-362 (758)
161 PRK05563 DNA polymerase III su 97.6 0.002 4.3E-08 73.8 17.3 173 130-327 16-218 (559)
162 PRK14086 dnaA chromosomal repl 97.6 0.0021 4.5E-08 72.6 16.8 156 152-325 315-484 (617)
163 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00078 1.7E-08 81.4 14.4 155 131-299 174-351 (852)
164 PRK10865 protein disaggregatio 97.6 0.00091 2E-08 80.5 14.6 153 131-298 179-355 (857)
165 CHL00095 clpC Clp protease ATP 97.5 0.0005 1.1E-08 82.8 12.3 154 131-296 180-353 (821)
166 TIGR03689 pup_AAA proteasome A 97.5 0.00047 1E-08 76.7 11.0 156 131-299 183-380 (512)
167 PRK05707 DNA polymerase III su 97.5 0.0026 5.7E-08 67.5 15.7 154 151-329 22-203 (328)
168 COG3267 ExeA Type II secretory 97.5 0.0077 1.7E-07 59.3 17.3 178 149-331 49-247 (269)
169 TIGR01241 FtsH_fam ATP-depende 97.5 0.0031 6.7E-08 71.7 17.4 170 131-323 56-260 (495)
170 smart00382 AAA ATPases associa 97.5 0.00045 9.8E-09 63.9 8.7 87 152-242 3-91 (148)
171 KOG2982 Uncharacterized conser 97.5 2.7E-05 5.8E-10 77.0 0.2 231 509-776 47-287 (418)
172 PF12799 LRR_4: Leucine Rich r 97.5 0.00013 2.7E-09 51.7 3.4 40 507-548 1-40 (44)
173 KOG0741 AAA+-type ATPase [Post 97.5 0.0025 5.5E-08 68.4 14.3 144 150-319 537-704 (744)
174 COG1222 RPT1 ATP-dependent 26S 97.5 0.0018 3.9E-08 66.5 12.8 194 132-349 153-392 (406)
175 COG1373 Predicted ATPase (AAA+ 97.4 0.0018 3.8E-08 70.9 13.9 163 135-328 22-191 (398)
176 PF00004 AAA: ATPase family as 97.4 0.00038 8.3E-09 63.6 7.4 22 154-175 1-22 (132)
177 TIGR00763 lon ATP-dependent pr 97.4 0.0057 1.2E-07 73.4 19.2 157 130-297 320-505 (775)
178 COG0593 DnaA ATPase involved i 97.4 0.0024 5.2E-08 68.5 14.0 138 150-305 112-265 (408)
179 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0017 3.7E-08 70.9 12.6 169 131-322 191-395 (802)
180 KOG3665 ZYG-1-like serine/thre 97.4 7E-05 1.5E-09 86.9 2.3 98 506-604 121-231 (699)
181 PRK10536 hypothetical protein; 97.4 0.0013 2.7E-08 65.9 10.6 132 131-266 56-212 (262)
182 CHL00176 ftsH cell division pr 97.4 0.004 8.7E-08 71.9 16.2 168 131-321 184-386 (638)
183 PF10443 RNA12: RNA12 protein; 97.4 0.0087 1.9E-07 64.0 17.2 195 135-340 1-289 (431)
184 TIGR00602 rad24 checkpoint pro 97.4 0.00067 1.5E-08 77.6 9.6 192 130-327 84-321 (637)
185 KOG1644 U2-associated snRNP A' 97.3 0.00027 5.8E-09 66.4 4.8 129 487-642 21-151 (233)
186 PRK08116 hypothetical protein; 97.3 0.00037 8E-09 71.9 6.2 101 152-266 115-220 (268)
187 PRK08118 topology modulation p 97.3 0.00015 3.3E-09 69.0 3.0 37 152-188 2-38 (167)
188 PRK08769 DNA polymerase III su 97.2 0.012 2.5E-07 62.1 16.4 172 137-330 11-209 (319)
189 KOG4579 Leucine-rich repeat (L 97.2 6.9E-05 1.5E-09 65.7 -0.6 86 486-573 54-141 (177)
190 COG0542 clpA ATP-binding subun 97.2 0.015 3.2E-07 67.4 17.6 103 130-240 491-604 (786)
191 PRK08058 DNA polymerase III su 97.2 0.0085 1.9E-07 64.1 15.0 146 131-295 6-180 (329)
192 COG0466 Lon ATP-dependent Lon 97.1 0.0029 6.2E-08 71.0 11.1 153 131-297 324-508 (782)
193 PRK10787 DNA-binding ATP-depen 97.1 0.0055 1.2E-07 72.8 14.3 158 129-297 321-506 (784)
194 PF02562 PhoH: PhoH-like prote 97.1 0.0011 2.3E-08 64.6 6.2 127 134-266 4-155 (205)
195 PRK07261 topology modulation p 97.1 0.0017 3.6E-08 62.3 7.5 67 153-240 2-68 (171)
196 KOG2739 Leucine-rich acidic nu 97.1 0.00034 7.5E-09 68.7 2.8 88 482-570 40-131 (260)
197 PF04665 Pox_A32: Poxvirus A32 97.0 0.0013 2.8E-08 65.5 6.6 36 152-190 14-49 (241)
198 PHA00729 NTP-binding motif con 97.0 0.0028 6.1E-08 62.4 8.8 35 141-175 7-41 (226)
199 PF00448 SRP54: SRP54-type pro 97.0 0.0031 6.7E-08 61.7 9.1 86 151-239 1-93 (196)
200 KOG0991 Replication factor C, 97.0 0.0026 5.5E-08 61.1 7.9 92 130-241 27-125 (333)
201 TIGR02640 gas_vesic_GvpN gas v 97.0 0.01 2.2E-07 61.3 13.2 56 137-200 9-64 (262)
202 PRK06871 DNA polymerase III su 97.0 0.032 6.9E-07 58.9 16.9 174 138-327 10-201 (325)
203 PF13177 DNA_pol3_delta2: DNA 97.0 0.0095 2.1E-07 56.4 11.6 137 134-285 1-162 (162)
204 PRK06090 DNA polymerase III su 97.0 0.037 7.9E-07 58.3 16.8 163 138-329 11-201 (319)
205 KOG0730 AAA+-type ATPase [Post 96.9 0.012 2.5E-07 65.6 13.3 161 133-312 437-630 (693)
206 PRK08181 transposase; Validate 96.9 0.0015 3.2E-08 67.1 5.8 77 144-239 101-177 (269)
207 TIGR01243 CDC48 AAA family ATP 96.9 0.018 4E-07 68.9 16.0 170 131-323 454-657 (733)
208 KOG0731 AAA+-type ATPase conta 96.9 0.01 2.2E-07 68.1 12.8 173 131-326 312-521 (774)
209 CHL00195 ycf46 Ycf46; Provisio 96.9 0.01 2.2E-07 66.3 12.6 172 131-323 229-429 (489)
210 PRK10865 protein disaggregatio 96.8 0.0073 1.6E-07 72.9 12.1 46 130-175 568-622 (857)
211 TIGR02237 recomb_radB DNA repa 96.8 0.0041 8.8E-08 62.1 8.4 85 150-239 11-107 (209)
212 COG2812 DnaX DNA polymerase II 96.8 0.012 2.6E-07 65.2 12.6 184 131-326 17-217 (515)
213 TIGR01243 CDC48 AAA family ATP 96.8 0.013 2.8E-07 70.2 13.9 172 131-325 179-383 (733)
214 PRK09361 radB DNA repair and r 96.8 0.0061 1.3E-07 61.6 9.5 84 150-238 22-116 (225)
215 PRK12608 transcription termina 96.8 0.01 2.2E-07 63.0 11.2 100 138-239 119-230 (380)
216 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0025 5.5E-08 76.5 7.5 47 129-175 565-620 (852)
217 PRK12377 putative replication 96.8 0.0073 1.6E-07 61.1 9.7 74 150-239 100-173 (248)
218 COG1223 Predicted ATPase (AAA+ 96.8 0.011 2.3E-07 58.0 10.2 168 131-322 122-318 (368)
219 KOG2004 Mitochondrial ATP-depe 96.8 0.062 1.4E-06 60.4 17.2 152 131-297 412-596 (906)
220 KOG1947 Leucine rich repeat pr 96.7 0.0003 6.5E-09 80.5 -0.7 62 505-566 186-254 (482)
221 KOG0733 Nuclear AAA ATPase (VC 96.7 0.014 3.1E-07 64.0 11.8 152 151-323 545-718 (802)
222 KOG1514 Origin recognition com 96.7 0.061 1.3E-06 60.5 16.8 198 130-332 396-624 (767)
223 cd00983 recA RecA is a bacter 96.7 0.0049 1.1E-07 64.6 8.0 82 150-239 54-143 (325)
224 TIGR02012 tigrfam_recA protein 96.7 0.005 1.1E-07 64.5 8.1 82 150-239 54-143 (321)
225 COG1875 NYN ribonuclease and A 96.7 0.0037 7.9E-08 64.4 6.8 131 134-266 228-387 (436)
226 PRK06835 DNA replication prote 96.7 0.038 8.3E-07 58.6 14.7 37 151-190 183-219 (329)
227 PRK06964 DNA polymerase III su 96.7 0.083 1.8E-06 56.2 17.1 92 228-330 131-226 (342)
228 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.2E-08 58.7 3.5 23 153-175 1-23 (121)
229 cd01393 recA_like RecA is a b 96.7 0.011 2.5E-07 59.7 10.4 88 150-239 18-124 (226)
230 PRK09354 recA recombinase A; P 96.7 0.006 1.3E-07 64.5 8.3 82 150-239 59-148 (349)
231 PRK08939 primosomal protein Dn 96.7 0.0051 1.1E-07 64.6 7.8 115 134-265 135-259 (306)
232 KOG2123 Uncharacterized conser 96.6 0.00012 2.7E-09 71.8 -3.9 59 508-570 20-78 (388)
233 PRK09183 transposase/IS protei 96.6 0.0033 7.3E-08 64.5 6.3 74 151-240 102-175 (259)
234 PRK06526 transposase; Provisio 96.6 0.0021 4.7E-08 65.5 4.7 73 151-240 98-170 (254)
235 PRK07993 DNA polymerase III su 96.6 0.073 1.6E-06 56.8 16.3 165 138-328 10-203 (334)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.01 2.2E-07 60.5 9.5 50 150-200 18-71 (235)
237 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0027 5.8E-08 66.9 5.2 45 131-175 52-102 (361)
238 PRK07952 DNA replication prote 96.6 0.015 3.3E-07 58.7 10.2 88 138-240 84-173 (244)
239 KOG0744 AAA+-type ATPase [Post 96.6 0.0059 1.3E-07 61.7 7.0 81 151-240 177-261 (423)
240 TIGR02639 ClpA ATP-dependent C 96.6 0.0074 1.6E-07 72.0 9.3 101 130-240 454-564 (731)
241 PRK04132 replication factor C 96.6 0.04 8.8E-07 65.2 15.1 154 159-329 574-731 (846)
242 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0063 1.4E-07 73.7 8.6 103 130-240 565-678 (852)
243 PF08423 Rad51: Rad51; InterP 96.5 0.014 3E-07 59.8 9.8 57 151-208 38-97 (256)
244 PRK11034 clpA ATP-dependent Cl 96.5 0.0062 1.3E-07 71.8 8.1 102 130-241 458-569 (758)
245 PRK06762 hypothetical protein; 96.5 0.029 6.3E-07 53.5 11.2 25 151-175 2-26 (166)
246 cd01394 radB RadB. The archaea 96.4 0.021 4.6E-07 57.3 10.4 43 150-195 18-60 (218)
247 PRK06696 uridine kinase; Valid 96.4 0.0055 1.2E-07 61.7 5.6 42 134-175 2-46 (223)
248 cd01120 RecA-like_NTPases RecA 96.4 0.019 4.1E-07 54.5 9.2 40 153-195 1-40 (165)
249 PRK10733 hflB ATP-dependent me 96.3 0.031 6.8E-07 65.4 12.3 147 153-322 187-356 (644)
250 KOG2123 Uncharacterized conser 96.3 0.00026 5.6E-09 69.6 -4.0 76 487-565 21-98 (388)
251 CHL00095 clpC Clp protease ATP 96.3 0.012 2.6E-07 71.2 9.1 103 130-240 509-622 (821)
252 KOG2228 Origin recognition com 96.3 0.047 1E-06 55.9 11.6 165 130-297 24-219 (408)
253 TIGR01425 SRP54_euk signal rec 96.3 0.17 3.7E-06 55.3 16.8 26 150-175 99-124 (429)
254 PF01695 IstB_IS21: IstB-like 96.3 0.0016 3.5E-08 62.6 1.2 74 150-240 46-119 (178)
255 PRK08233 hypothetical protein; 96.2 0.014 3E-07 56.8 7.7 25 151-175 3-27 (182)
256 COG1484 DnaC DNA replication p 96.2 0.023 5.1E-07 58.0 9.5 74 150-239 104-177 (254)
257 PF03215 Rad17: Rad17 cell cyc 96.2 0.03 6.5E-07 63.1 11.1 53 132-189 21-78 (519)
258 KOG1947 Leucine rich repeat pr 96.2 0.0017 3.8E-08 74.2 1.4 83 484-566 187-280 (482)
259 TIGR02238 recomb_DMC1 meiotic 96.2 0.027 5.8E-07 59.4 10.1 59 150-209 95-156 (313)
260 PF07693 KAP_NTPase: KAP famil 96.2 0.16 3.4E-06 54.6 16.3 40 136-175 2-44 (325)
261 PRK05541 adenylylsulfate kinas 96.2 0.0095 2.1E-07 57.5 6.1 36 150-188 6-41 (176)
262 COG1102 Cmk Cytidylate kinase 96.2 0.014 3E-07 53.2 6.4 43 153-209 2-44 (179)
263 cd01133 F1-ATPase_beta F1 ATP 96.2 0.031 6.6E-07 57.1 9.8 87 150-239 68-173 (274)
264 COG0470 HolB ATPase involved i 96.2 0.033 7.2E-07 59.9 10.9 141 132-286 3-170 (325)
265 PRK06921 hypothetical protein; 96.2 0.022 4.8E-07 58.7 9.0 39 150-190 116-154 (266)
266 PLN00020 ribulose bisphosphate 96.1 0.0082 1.8E-07 62.9 5.6 27 149-175 146-172 (413)
267 KOG0736 Peroxisome assembly fa 96.1 0.24 5.2E-06 56.5 17.0 91 131-240 673-775 (953)
268 KOG2035 Replication factor C, 96.1 0.04 8.8E-07 54.7 9.8 208 132-352 15-261 (351)
269 cd03115 SRP The signal recogni 96.1 0.025 5.4E-07 54.4 8.6 23 153-175 2-24 (173)
270 COG1618 Predicted nucleotide k 96.1 0.007 1.5E-07 55.0 4.2 34 152-187 6-39 (179)
271 KOG0734 AAA+-type ATPase conta 96.1 0.07 1.5E-06 57.9 12.3 44 132-175 306-361 (752)
272 PF00154 RecA: recA bacterial 96.1 0.07 1.5E-06 55.9 12.2 87 150-240 52-142 (322)
273 PLN03187 meiotic recombination 96.1 0.026 5.6E-07 60.0 9.1 59 150-209 125-186 (344)
274 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.036 7.8E-07 51.6 8.9 113 152-268 3-139 (159)
275 KOG2739 Leucine-rich acidic nu 96.0 0.0029 6.3E-08 62.4 1.6 88 504-606 40-129 (260)
276 TIGR02239 recomb_RAD51 DNA rep 96.0 0.036 7.8E-07 58.7 9.9 58 150-208 95-155 (316)
277 PRK04296 thymidine kinase; Pro 96.0 0.0059 1.3E-07 59.6 3.7 109 152-268 3-117 (190)
278 cd01131 PilT Pilus retraction 96.0 0.0074 1.6E-07 59.4 4.4 110 152-270 2-112 (198)
279 KOG0735 AAA+-type ATPase [Post 96.0 0.017 3.8E-07 64.5 7.5 157 150-326 430-613 (952)
280 PF00560 LRR_1: Leucine Rich R 96.0 0.0033 7.1E-08 36.9 1.1 21 556-576 1-21 (22)
281 KOG0743 AAA+-type ATPase [Post 96.0 1.4 3.1E-05 47.5 21.3 147 153-334 237-414 (457)
282 PF13604 AAA_30: AAA domain; P 95.9 0.02 4.4E-07 56.1 7.2 37 139-175 6-42 (196)
283 PRK15455 PrkA family serine pr 95.9 0.0086 1.9E-07 66.5 4.9 45 131-175 77-127 (644)
284 TIGR03499 FlhF flagellar biosy 95.9 0.034 7.3E-07 58.0 9.1 86 150-238 193-281 (282)
285 COG0541 Ffh Signal recognition 95.9 0.6 1.3E-05 50.1 18.1 57 150-209 99-156 (451)
286 PRK06547 hypothetical protein; 95.9 0.011 2.5E-07 56.3 5.1 36 140-175 4-39 (172)
287 COG0464 SpoVK ATPases of the A 95.9 0.094 2E-06 59.9 13.4 151 132-301 244-427 (494)
288 PRK00771 signal recognition pa 95.9 0.045 9.8E-07 60.3 10.3 86 150-239 94-185 (437)
289 COG0468 RecA RecA/RadA recombi 95.9 0.04 8.7E-07 56.4 9.1 86 150-239 59-151 (279)
290 KOG1969 DNA replication checkp 95.9 0.019 4.1E-07 64.5 7.2 73 150-241 325-399 (877)
291 PRK10867 signal recognition pa 95.9 0.041 8.9E-07 60.4 9.8 26 150-175 99-124 (433)
292 TIGR00959 ffh signal recogniti 95.8 0.039 8.6E-07 60.5 9.6 88 150-239 98-192 (428)
293 PRK14974 cell division protein 95.8 0.069 1.5E-06 56.7 11.0 86 150-239 139-232 (336)
294 PF14532 Sigma54_activ_2: Sigm 95.8 0.0094 2E-07 54.9 4.0 43 133-175 1-45 (138)
295 PRK08699 DNA polymerase III su 95.8 0.13 2.8E-06 54.6 13.1 25 151-175 21-45 (325)
296 COG0542 clpA ATP-binding subun 95.8 0.024 5.2E-07 65.7 7.9 152 131-298 171-347 (786)
297 COG2607 Predicted ATPase (AAA+ 95.8 0.045 9.7E-07 53.4 8.4 46 130-175 60-109 (287)
298 PTZ00494 tuzin-like protein; P 95.8 0.43 9.4E-06 51.1 16.2 159 129-297 370-544 (664)
299 KOG1051 Chaperone HSP104 and r 95.7 0.043 9.2E-07 64.6 9.6 102 130-241 562-672 (898)
300 cd03238 ABC_UvrA The excision 95.7 0.034 7.4E-07 53.3 7.4 120 150-281 20-161 (176)
301 PLN03186 DNA repair protein RA 95.7 0.076 1.6E-06 56.6 10.6 58 150-209 122-183 (342)
302 PRK11889 flhF flagellar biosyn 95.7 0.05 1.1E-06 58.0 9.0 87 150-239 240-330 (436)
303 PF13238 AAA_18: AAA domain; P 95.7 0.009 2E-07 54.1 3.2 21 154-174 1-21 (129)
304 COG2884 FtsE Predicted ATPase 95.6 0.073 1.6E-06 50.1 8.9 121 150-274 27-204 (223)
305 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.037 8.1E-07 53.8 7.6 23 153-175 1-23 (183)
306 TIGR00064 ftsY signal recognit 95.6 0.069 1.5E-06 55.2 9.8 87 149-239 70-164 (272)
307 PTZ00035 Rad51 protein; Provis 95.6 0.12 2.7E-06 55.1 12.0 58 150-209 117-178 (337)
308 PRK09270 nucleoside triphospha 95.6 0.051 1.1E-06 54.9 8.7 27 149-175 31-57 (229)
309 TIGR02236 recomb_radA DNA repa 95.6 0.07 1.5E-06 56.8 10.1 57 150-208 94-154 (310)
310 cd03214 ABC_Iron-Siderophores_ 95.6 0.043 9.4E-07 53.1 7.8 117 150-270 24-161 (180)
311 PRK07667 uridine kinase; Provi 95.6 0.016 3.4E-07 56.8 4.8 37 139-175 3-41 (193)
312 cd03247 ABCC_cytochrome_bd The 95.5 0.048 1E-06 52.7 8.0 26 150-175 27-52 (178)
313 PRK14722 flhF flagellar biosyn 95.5 0.05 1.1E-06 58.3 8.6 87 150-239 136-225 (374)
314 PRK04301 radA DNA repair and r 95.5 0.067 1.5E-06 57.0 9.7 57 150-208 101-161 (317)
315 TIGR02858 spore_III_AA stage I 95.5 0.072 1.6E-06 54.8 9.4 124 139-270 98-232 (270)
316 PRK12724 flagellar biosynthesi 95.5 0.042 9.1E-07 59.4 7.7 25 151-175 223-247 (432)
317 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.12 2.7E-06 52.4 11.0 48 150-202 20-67 (237)
318 KOG0728 26S proteasome regulat 95.4 0.22 4.7E-06 48.7 11.6 182 132-333 148-367 (404)
319 cd01121 Sms Sms (bacterial rad 95.4 0.074 1.6E-06 57.5 9.6 80 150-238 81-167 (372)
320 PF00006 ATP-synt_ab: ATP synt 95.4 0.038 8.3E-07 54.6 6.8 91 142-239 5-115 (215)
321 PRK12727 flagellar biosynthesi 95.4 0.092 2E-06 58.4 10.2 87 150-239 349-438 (559)
322 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.11 2.4E-06 53.4 10.4 41 150-193 35-75 (259)
323 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3.1E-07 46.2 2.9 23 153-175 1-23 (69)
324 COG5238 RNA1 Ran GTPase-activa 95.4 0.024 5.1E-07 56.1 5.0 42 527-568 88-133 (388)
325 PF00485 PRK: Phosphoribulokin 95.4 0.013 2.8E-07 57.5 3.4 23 153-175 1-23 (194)
326 COG0572 Udk Uridine kinase [Nu 95.3 0.033 7.2E-07 54.3 6.0 26 150-175 7-32 (218)
327 KOG0739 AAA+-type ATPase [Post 95.3 0.32 7E-06 49.0 12.7 169 131-323 134-335 (439)
328 PRK09519 recA DNA recombinatio 95.3 0.052 1.1E-06 63.5 8.4 82 150-239 59-148 (790)
329 PRK06067 flagellar accessory p 95.3 0.094 2E-06 53.2 9.5 84 150-239 24-130 (234)
330 COG1066 Sms Predicted ATP-depe 95.3 0.069 1.5E-06 56.4 8.4 91 139-239 79-178 (456)
331 KOG2170 ATPase of the AAA+ sup 95.3 0.059 1.3E-06 54.4 7.5 46 130-175 82-134 (344)
332 COG0563 Adk Adenylate kinase a 95.2 0.033 7.2E-07 53.4 5.6 23 153-175 2-24 (178)
333 PRK13531 regulatory ATPase Rav 95.2 0.028 6.1E-07 61.7 5.7 44 130-175 20-63 (498)
334 PF01583 APS_kinase: Adenylyls 95.2 0.023 4.9E-07 52.7 4.3 36 151-189 2-37 (156)
335 PRK12726 flagellar biosynthesi 95.2 0.1 2.2E-06 55.5 9.5 87 150-239 205-295 (407)
336 PRK05480 uridine/cytidine kina 95.2 0.019 4.1E-07 57.2 4.0 27 149-175 4-30 (209)
337 COG4608 AppF ABC-type oligopep 95.2 0.094 2E-06 52.7 8.6 121 150-275 38-178 (268)
338 PF13481 AAA_25: AAA domain; P 95.1 0.14 3E-06 50.2 10.0 42 152-193 33-81 (193)
339 PRK06002 fliI flagellum-specif 95.1 0.1 2.2E-06 57.2 9.5 86 150-239 164-264 (450)
340 TIGR00708 cobA cob(I)alamin ad 95.1 0.068 1.5E-06 50.5 7.1 112 151-267 5-140 (173)
341 cd03223 ABCD_peroxisomal_ALDP 95.1 0.12 2.6E-06 49.3 9.0 124 150-281 26-160 (166)
342 KOG0727 26S proteasome regulat 95.1 3.8 8.3E-05 40.4 20.0 160 132-311 157-353 (408)
343 PF07728 AAA_5: AAA domain (dy 95.1 0.052 1.1E-06 50.0 6.4 42 154-201 2-43 (139)
344 cd01135 V_A-ATPase_B V/A-type 95.1 0.076 1.6E-06 54.1 7.9 90 150-240 68-177 (276)
345 PF13671 AAA_33: AAA domain; P 95.1 0.019 4.2E-07 53.1 3.5 23 153-175 1-23 (143)
346 cd02025 PanK Pantothenate kina 95.1 0.094 2E-06 52.4 8.6 23 153-175 1-23 (220)
347 PRK04328 hypothetical protein; 95.1 0.12 2.7E-06 52.8 9.6 41 150-193 22-62 (249)
348 TIGR00554 panK_bact pantothena 95.1 0.11 2.3E-06 54.0 9.0 80 149-229 60-141 (290)
349 cd03228 ABCC_MRP_Like The MRP 95.0 0.082 1.8E-06 50.7 7.8 26 150-175 27-52 (171)
350 PTZ00088 adenylate kinase 1; P 95.0 0.017 3.8E-07 57.8 3.2 23 153-175 8-30 (229)
351 PTZ00301 uridine kinase; Provi 95.0 0.021 4.6E-07 56.4 3.7 25 151-175 3-27 (210)
352 PRK12723 flagellar biosynthesi 95.0 0.11 2.4E-06 56.2 9.3 88 150-239 173-264 (388)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.089 1.9E-06 48.7 7.4 103 150-271 25-131 (144)
354 PF10236 DAP3: Mitochondrial r 94.9 1.5 3.2E-05 46.5 17.3 49 278-326 258-306 (309)
355 TIGR00235 udk uridine kinase. 94.9 0.024 5.1E-07 56.4 3.7 26 150-175 5-30 (207)
356 TIGR00150 HI0065_YjeE ATPase, 94.9 0.046 1E-06 49.2 5.1 38 138-175 7-46 (133)
357 PRK03839 putative kinase; Prov 94.9 0.023 5E-07 55.1 3.4 23 153-175 2-24 (180)
358 PF00910 RNA_helicase: RNA hel 94.8 0.02 4.4E-07 49.9 2.7 22 154-175 1-22 (107)
359 PF06309 Torsin: Torsin; Inte 94.8 0.13 2.8E-06 45.5 7.6 45 131-175 26-77 (127)
360 PF12775 AAA_7: P-loop contain 94.8 0.027 5.7E-07 58.3 4.0 88 140-239 23-110 (272)
361 PF06745 KaiC: KaiC; InterPro 94.8 0.073 1.6E-06 53.8 7.1 84 150-239 18-125 (226)
362 cd03216 ABC_Carb_Monos_I This 94.8 0.05 1.1E-06 51.7 5.5 115 150-271 25-146 (163)
363 PRK06217 hypothetical protein; 94.8 0.049 1.1E-06 52.9 5.5 34 153-188 3-38 (183)
364 TIGR01360 aden_kin_iso1 adenyl 94.8 0.026 5.6E-07 55.1 3.6 26 150-175 2-27 (188)
365 TIGR01650 PD_CobS cobaltochela 94.8 1.2 2.7E-05 46.8 15.9 59 133-199 48-106 (327)
366 TIGR00382 clpX endopeptidase C 94.7 0.097 2.1E-06 57.1 8.1 47 129-175 76-140 (413)
367 cd03222 ABC_RNaseL_inhibitor T 94.7 0.11 2.4E-06 49.9 7.6 26 150-175 24-49 (177)
368 PRK10463 hydrogenase nickel in 94.7 0.17 3.6E-06 52.2 9.3 32 144-175 97-128 (290)
369 COG3640 CooC CO dehydrogenase 94.7 0.055 1.2E-06 52.7 5.4 43 153-197 2-44 (255)
370 PF07726 AAA_3: ATPase family 94.6 0.023 4.9E-07 50.3 2.5 27 154-183 2-28 (131)
371 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.37 8E-06 48.7 11.7 41 150-193 19-59 (229)
372 PRK06851 hypothetical protein; 94.6 0.45 9.7E-06 51.0 12.6 55 133-193 200-254 (367)
373 TIGR00390 hslU ATP-dependent p 94.6 0.076 1.6E-06 57.2 6.8 74 130-206 12-103 (441)
374 TIGR02655 circ_KaiC circadian 94.6 0.22 4.7E-06 56.5 10.9 59 139-202 249-309 (484)
375 PRK05973 replicative DNA helic 94.6 0.23 5E-06 49.8 9.8 49 150-203 63-111 (237)
376 COG1428 Deoxynucleoside kinase 94.6 0.03 6.6E-07 53.8 3.4 25 151-175 4-28 (216)
377 KOG3347 Predicted nucleotide k 94.6 0.051 1.1E-06 48.8 4.4 72 151-231 7-78 (176)
378 PRK07132 DNA polymerase III su 94.6 1.6 3.4E-05 45.7 16.3 167 139-328 5-184 (299)
379 COG4088 Predicted nucleotide k 94.5 0.08 1.7E-06 50.4 5.9 24 152-175 2-25 (261)
380 PRK00279 adk adenylate kinase; 94.5 0.15 3.3E-06 50.9 8.6 23 153-175 2-24 (215)
381 cd03246 ABCC_Protease_Secretio 94.5 0.099 2.1E-06 50.2 6.9 26 150-175 27-52 (173)
382 PRK04040 adenylate kinase; Pro 94.5 0.033 7.2E-07 54.1 3.5 24 152-175 3-26 (188)
383 KOG0735 AAA+-type ATPase [Post 94.5 1.1 2.3E-05 51.0 15.2 170 132-325 669-872 (952)
384 PRK15453 phosphoribulokinase; 94.5 0.22 4.7E-06 50.9 9.4 27 149-175 3-29 (290)
385 PRK00625 shikimate kinase; Pro 94.5 0.031 6.7E-07 53.4 3.2 23 153-175 2-24 (173)
386 PRK05439 pantothenate kinase; 94.5 0.19 4.2E-06 52.5 9.3 27 149-175 84-110 (311)
387 cd02027 APSK Adenosine 5'-phos 94.5 0.15 3.3E-06 47.5 7.8 23 153-175 1-23 (149)
388 PRK05703 flhF flagellar biosyn 94.4 0.13 2.7E-06 56.9 8.3 85 151-238 221-308 (424)
389 COG5238 RNA1 Ran GTPase-activa 94.4 0.037 7.9E-07 54.8 3.6 124 501-644 86-227 (388)
390 PF00560 LRR_1: Leucine Rich R 94.4 0.017 3.8E-07 33.8 0.9 21 532-553 1-21 (22)
391 PRK11823 DNA repair protein Ra 94.4 0.2 4.4E-06 55.8 10.0 41 150-193 79-119 (446)
392 COG1703 ArgK Putative periplas 94.4 0.069 1.5E-06 54.1 5.5 60 140-200 38-99 (323)
393 TIGR00416 sms DNA repair prote 94.4 0.29 6.3E-06 54.6 11.1 52 139-193 80-133 (454)
394 TIGR01069 mutS2 MutS2 family p 94.4 0.025 5.4E-07 67.2 2.8 180 150-351 321-522 (771)
395 PRK12597 F0F1 ATP synthase sub 94.4 0.19 4.2E-06 55.4 9.5 88 150-239 142-247 (461)
396 PRK09280 F0F1 ATP synthase sub 94.4 0.24 5.2E-06 54.5 10.1 88 150-239 143-248 (463)
397 PF07724 AAA_2: AAA domain (Cd 94.4 0.054 1.2E-06 51.7 4.6 43 151-195 3-45 (171)
398 PRK13765 ATP-dependent proteas 94.4 0.077 1.7E-06 61.3 6.6 75 130-209 31-105 (637)
399 PF08433 KTI12: Chromatin asso 94.4 0.067 1.4E-06 55.1 5.5 24 152-175 2-25 (270)
400 PRK00409 recombination and DNA 94.3 1.1 2.5E-05 53.6 16.5 181 150-351 326-527 (782)
401 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.19 4.1E-06 51.2 8.6 86 150-240 68-172 (274)
402 PRK08533 flagellar accessory p 94.3 0.32 6.9E-06 49.1 10.2 49 150-203 23-71 (230)
403 PRK05201 hslU ATP-dependent pr 94.3 0.13 2.8E-06 55.5 7.7 75 130-207 15-107 (443)
404 cd02024 NRK1 Nicotinamide ribo 94.3 0.032 7E-07 53.8 2.9 23 153-175 1-23 (187)
405 PF05970 PIF1: PIF1-like helic 94.3 0.077 1.7E-06 57.7 6.1 38 138-175 9-46 (364)
406 PF03205 MobB: Molybdopterin g 94.2 0.056 1.2E-06 49.6 4.3 39 152-192 1-39 (140)
407 PF00625 Guanylate_kin: Guanyl 94.2 0.063 1.4E-06 52.1 4.9 38 151-191 2-39 (183)
408 TIGR03498 FliI_clade3 flagella 94.2 0.18 4E-06 55.1 8.8 86 150-239 139-240 (418)
409 TIGR01351 adk adenylate kinase 94.2 0.23 4.9E-06 49.5 9.0 22 154-175 2-23 (210)
410 PF03308 ArgK: ArgK protein; 94.2 0.09 2E-06 52.5 5.8 61 138-199 14-76 (266)
411 PRK08927 fliI flagellum-specif 94.2 0.29 6.4E-06 53.6 10.3 85 150-239 157-258 (442)
412 PRK10875 recD exonuclease V su 94.2 0.18 3.8E-06 58.3 9.1 56 151-206 167-222 (615)
413 cd00544 CobU Adenosylcobinamid 94.2 0.17 3.7E-06 48.1 7.5 78 154-238 2-82 (169)
414 cd01125 repA Hexameric Replica 94.2 0.3 6.5E-06 49.7 10.0 23 153-175 3-25 (239)
415 cd01136 ATPase_flagellum-secre 94.2 0.14 3.1E-06 53.9 7.5 85 150-239 68-169 (326)
416 COG1419 FlhF Flagellar GTP-bin 94.2 0.35 7.7E-06 51.7 10.4 70 139-209 187-261 (407)
417 PRK14528 adenylate kinase; Pro 94.2 0.16 3.6E-06 49.3 7.6 24 152-175 2-25 (186)
418 cd02029 PRK_like Phosphoribulo 94.1 0.18 3.8E-06 51.1 7.8 74 153-229 1-84 (277)
419 cd01428 ADK Adenylate kinase ( 94.1 0.15 3.2E-06 50.1 7.4 22 154-175 2-23 (194)
420 PRK00131 aroK shikimate kinase 94.1 0.046 9.9E-07 52.6 3.7 25 151-175 4-28 (175)
421 cd02023 UMPK Uridine monophosp 94.1 0.035 7.5E-07 54.8 2.8 23 153-175 1-23 (198)
422 PRK08149 ATP synthase SpaL; Va 94.1 0.13 2.8E-06 56.2 7.3 85 150-239 150-251 (428)
423 COG1936 Predicted nucleotide k 94.1 0.039 8.4E-07 51.2 2.8 20 153-172 2-21 (180)
424 PRK14721 flhF flagellar biosyn 94.1 0.29 6.3E-06 53.5 10.0 86 150-238 190-278 (420)
425 KOG0652 26S proteasome regulat 94.0 0.45 9.7E-06 46.9 10.0 190 124-334 163-392 (424)
426 COG2401 ABC-type ATPase fused 94.0 0.054 1.2E-06 57.0 4.0 43 133-175 374-433 (593)
427 COG0465 HflB ATP-dependent Zn 94.0 0.44 9.5E-06 54.0 11.4 171 131-324 151-356 (596)
428 PF13245 AAA_19: Part of AAA d 94.0 0.11 2.5E-06 41.8 5.1 26 150-175 9-34 (76)
429 cd03230 ABC_DR_subfamily_A Thi 94.0 0.13 2.8E-06 49.4 6.5 26 150-175 25-50 (173)
430 TIGR00764 lon_rel lon-related 94.0 0.15 3.3E-06 59.1 8.1 75 130-209 18-92 (608)
431 PTZ00185 ATPase alpha subunit; 94.0 0.23 4.9E-06 54.8 8.8 89 150-240 188-300 (574)
432 PF00406 ADK: Adenylate kinase 94.0 0.15 3.3E-06 47.6 6.8 20 156-175 1-20 (151)
433 KOG1970 Checkpoint RAD17-RFC c 94.0 0.63 1.4E-05 51.2 12.0 48 136-188 88-142 (634)
434 cd00227 CPT Chloramphenicol (C 94.0 0.047 1E-06 52.6 3.4 24 152-175 3-26 (175)
435 PRK15429 formate hydrogenlyase 94.0 0.15 3.3E-06 60.7 8.4 59 131-192 377-437 (686)
436 TIGR03575 selen_PSTK_euk L-ser 94.0 0.18 3.9E-06 53.5 7.9 22 154-175 2-23 (340)
437 PRK08972 fliI flagellum-specif 94.0 0.24 5.3E-06 54.0 9.0 85 150-239 161-262 (444)
438 TIGR02322 phosphon_PhnN phosph 94.0 0.047 1E-06 52.9 3.4 24 152-175 2-25 (179)
439 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.27 5.8E-06 54.0 9.4 88 150-239 137-242 (449)
440 PRK14531 adenylate kinase; Pro 93.9 0.15 3.3E-06 49.4 6.9 24 152-175 3-26 (183)
441 PF00158 Sigma54_activat: Sigm 93.9 0.078 1.7E-06 50.4 4.7 58 132-192 1-60 (168)
442 COG0003 ArsA Predicted ATPase 93.9 0.089 1.9E-06 55.3 5.5 49 151-202 2-50 (322)
443 cd01122 GP4d_helicase GP4d_hel 93.9 0.36 7.8E-06 50.3 10.2 53 151-207 30-82 (271)
444 PRK14723 flhF flagellar biosyn 93.9 0.23 5E-06 58.1 9.3 86 151-239 185-273 (767)
445 PRK00889 adenylylsulfate kinas 93.9 0.058 1.3E-06 52.0 3.9 26 150-175 3-28 (175)
446 TIGR01420 pilT_fam pilus retra 93.9 0.064 1.4E-06 57.8 4.6 111 150-269 121-232 (343)
447 cd02021 GntK Gluconate kinase 93.9 0.042 9.2E-07 51.4 2.8 23 153-175 1-23 (150)
448 KOG1532 GTPase XAB1, interacts 93.9 0.064 1.4E-06 53.1 4.0 59 150-209 18-85 (366)
449 CHL00081 chlI Mg-protoporyphyr 93.9 0.082 1.8E-06 56.3 5.1 46 130-175 17-62 (350)
450 PRK10416 signal recognition pa 93.9 0.37 8.1E-06 51.0 10.1 26 150-175 113-138 (318)
451 COG0488 Uup ATPase components 93.8 0.56 1.2E-05 53.1 12.0 245 5-283 228-511 (530)
452 cd02020 CMPK Cytidine monophos 93.8 0.046 1E-06 50.8 2.9 23 153-175 1-23 (147)
453 cd00071 GMPK Guanosine monopho 93.8 0.052 1.1E-06 49.8 3.2 23 153-175 1-23 (137)
454 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.13 2.8E-06 48.5 6.0 114 151-272 25-145 (157)
455 TIGR02030 BchI-ChlI magnesium 93.8 0.09 1.9E-06 56.0 5.3 45 131-175 5-49 (337)
456 PF08298 AAA_PrkA: PrkA AAA do 93.8 0.09 2E-06 55.1 5.2 46 130-175 61-112 (358)
457 PRK06995 flhF flagellar biosyn 93.8 0.25 5.3E-06 55.0 8.8 58 151-209 256-314 (484)
458 cd02028 UMPK_like Uridine mono 93.8 0.046 1E-06 52.7 2.9 23 153-175 1-23 (179)
459 PF13504 LRR_7: Leucine rich r 93.8 0.041 8.8E-07 29.9 1.4 16 556-571 2-17 (17)
460 cd03281 ABC_MSH5_euk MutS5 hom 93.8 0.061 1.3E-06 53.5 3.8 23 151-173 29-51 (213)
461 PF08477 Miro: Miro-like prote 93.7 0.053 1.2E-06 48.3 3.1 22 154-175 2-23 (119)
462 PRK10751 molybdopterin-guanine 93.7 0.066 1.4E-06 50.8 3.8 26 150-175 5-30 (173)
463 PRK06936 type III secretion sy 93.7 0.33 7.3E-06 53.1 9.6 86 149-239 160-262 (439)
464 COG1121 ZnuC ABC-type Mn/Zn tr 93.7 0.27 5.9E-06 49.4 8.2 119 151-271 30-203 (254)
465 PRK05922 type III secretion sy 93.7 0.41 9E-06 52.4 10.3 86 149-239 155-257 (434)
466 PF03266 NTPase_1: NTPase; In 93.7 0.055 1.2E-06 51.4 3.2 22 154-175 2-23 (168)
467 TIGR00073 hypB hydrogenase acc 93.7 0.072 1.6E-06 52.9 4.1 31 145-175 16-46 (207)
468 COG0396 sufC Cysteine desulfur 93.7 0.35 7.6E-06 47.2 8.5 58 220-279 153-216 (251)
469 KOG0729 26S proteasome regulat 93.7 0.4 8.6E-06 47.4 8.9 88 132-239 179-280 (435)
470 PRK13947 shikimate kinase; Pro 93.6 0.056 1.2E-06 51.9 3.2 23 153-175 3-25 (171)
471 PRK12678 transcription termina 93.6 0.19 4.1E-06 56.0 7.5 96 142-239 406-513 (672)
472 COG0467 RAD55 RecA-superfamily 93.6 0.081 1.7E-06 54.7 4.6 41 150-193 22-62 (260)
473 PRK06731 flhF flagellar biosyn 93.6 0.32 6.9E-06 50.0 8.7 87 150-239 74-164 (270)
474 PRK13949 shikimate kinase; Pro 93.6 0.059 1.3E-06 51.4 3.2 23 153-175 3-25 (169)
475 PF13306 LRR_5: Leucine rich r 93.6 0.22 4.8E-06 44.9 6.9 86 481-571 8-96 (129)
476 COG2019 AdkA Archaeal adenylat 93.6 0.068 1.5E-06 49.1 3.3 25 151-175 4-28 (189)
477 TIGR02902 spore_lonB ATP-depen 93.6 0.12 2.6E-06 59.1 6.2 45 131-175 66-110 (531)
478 COG1124 DppF ABC-type dipeptid 93.5 0.089 1.9E-06 51.7 4.3 26 150-175 32-57 (252)
479 COG0529 CysC Adenylylsulfate k 93.5 0.092 2E-06 48.8 4.1 29 147-175 19-47 (197)
480 PRK09435 membrane ATPase/prote 93.5 0.51 1.1E-05 50.0 10.4 36 140-175 43-80 (332)
481 PRK14530 adenylate kinase; Pro 93.5 0.063 1.4E-06 53.7 3.4 24 152-175 4-27 (215)
482 TIGR03263 guanyl_kin guanylate 93.5 0.057 1.2E-06 52.3 3.1 24 152-175 2-25 (180)
483 PF02374 ArsA_ATPase: Anion-tr 93.5 0.084 1.8E-06 55.6 4.5 45 152-199 2-46 (305)
484 KOG0927 Predicted transporter 93.5 0.17 3.6E-06 55.4 6.7 33 151-183 101-133 (614)
485 TIGR01040 V-ATPase_V1_B V-type 93.5 0.43 9.2E-06 52.3 9.8 89 150-239 140-257 (466)
486 KOG0736 Peroxisome assembly fa 93.5 0.93 2E-05 51.9 12.5 166 133-324 404-599 (953)
487 PRK12339 2-phosphoglycerate ki 93.4 0.074 1.6E-06 52.0 3.7 25 151-175 3-27 (197)
488 PRK05986 cob(I)alamin adenolsy 93.4 0.2 4.3E-06 48.1 6.4 114 150-267 21-158 (191)
489 PRK05688 fliI flagellum-specif 93.4 0.34 7.3E-06 53.3 9.1 85 150-239 167-268 (451)
490 PF13086 AAA_11: AAA domain; P 93.4 0.17 3.7E-06 51.2 6.6 23 153-175 19-41 (236)
491 PRK08760 replicative DNA helic 93.4 5.2 0.00011 45.2 18.7 54 150-207 228-281 (476)
492 COG0714 MoxR-like ATPases [Gen 93.4 0.18 3.9E-06 54.1 7.0 64 131-202 25-88 (329)
493 cd04159 Arl10_like Arl10-like 93.4 0.2 4.3E-06 46.9 6.6 21 154-174 2-22 (159)
494 PF03193 DUF258: Protein of un 93.3 0.1 2.2E-06 48.7 4.2 36 137-175 24-59 (161)
495 KOG0738 AAA+-type ATPase [Post 93.3 0.47 1E-05 49.8 9.3 24 152-175 246-269 (491)
496 TIGR01041 ATP_syn_B_arch ATP s 93.3 0.22 4.9E-06 55.0 7.5 89 150-239 140-248 (458)
497 TIGR01039 atpD ATP synthase, F 93.3 0.46 1E-05 52.2 9.8 88 150-239 142-247 (461)
498 PRK07594 type III secretion sy 93.2 0.3 6.4E-06 53.5 8.3 86 149-239 153-255 (433)
499 COG4240 Predicted kinase [Gene 93.2 0.35 7.6E-06 46.8 7.6 80 149-230 48-134 (300)
500 PLN02165 adenylate isopentenyl 93.2 0.078 1.7E-06 55.6 3.7 29 147-175 39-67 (334)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-99 Score=873.52 Aligned_cols=819 Identities=42% Similarity=0.711 Sum_probs=676.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhHHhhh-------------
Q 038480 7 QLEENLASLQTQLQKLIEAKNDVVVRVANAEQQQMRRLNKVQGWISRVGSVEAEVGELIRKSSEEID------------- 73 (850)
Q Consensus 7 ~~~~~~~~l~~~l~~L~~~l~~i~~~~~~a~~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~------------- 73 (850)
.....+....+.+.+|+..+..++.++++|+.++.. ...+..|.+.+++++|+++|+++.+..+..
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~ 96 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSV 96 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHH
Confidence 344445555556777777777777777888776643 367889999999999999999998865432
Q ss_pred ---ccccCCcccCCccccchhhHHHHHHHHHHHHHHhcCCcceecc-cCCCCCccccCCCCcc-cchhHHHHHHHHHhcc
Q 038480 74 ---KLCLGGYCSKNCQSSHKFGKKVSKMLQVVDILMGEGAFDVVAE-KVPQPAVDERPLEPTI-VGLESTLDKVWRCFEE 148 (850)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vgr~~~~~~l~~~l~~ 148 (850)
+-|..++|++.....+.+++++.+++++++.+..++.|+.+.. ..+......+|..+.. ||.+..++++++.|.+
T Consensus 97 ~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 97 ERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLME 176 (889)
T ss_pred HHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhcc
Confidence 1233355666777778899999999999999988876766553 2222333334443333 9999999999999999
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS----FGNKSLEEKASDIFK 224 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~l~~ 224 (850)
++..+++|+||||+||||||++++|+...++.+||.++||+||+.++..+++++|++.++. +.....++.+..|.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 8889999999999999999999999984489999999999999999999999999999987 223334688999999
Q ss_pred HhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh-ccCcceEeccCCChhhHHHHHHHHhCCCCCC
Q 038480 225 ILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL-MGAQKKFKIECLRDKEAWELFLEKVGEEPLV 303 (850)
Q Consensus 225 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 303 (850)
.|++|||+|||||||+..+|+.++.++|...+|+||++|||+.+||.. +++...+++..|+.+|||.||++.++.....
T Consensus 257 ~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 257 LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999998 8888999999999999999999999988766
Q ss_pred CCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhc-cCCCCCCchhhHhHHHHhhcCCChHHHHHH
Q 038480 304 SHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRS-ASEFPGMGKEVYPLLKFSYDSLSSDVLRSC 382 (850)
Q Consensus 304 ~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~c 382 (850)
.++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.+++.+.+++++++||+.||+ ++|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHH
Confidence 7777999999999999999999999999999999999999999999887 666677788999999999999996 89999
Q ss_pred HhHhcCCCCCcccCHHHHHHHHHHcCCCCCCC-CccchhhHHHHHHHHHHhhhccccC----cceEEEhhhHHHHHHHHH
Q 038480 383 LLYCSLFPEDYQISKIELIECWIGEGFLNGFE-GMGVYNQGYYVIGVLVQACLLEEVG----TNFVKMHDVIRDMSLWIA 457 (850)
Q Consensus 383 f~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~----~~~~~mHdlv~~~~~~~~ 457 (850)
|+|||+||+||.|+++.||.+||||||+.+.+ +..+++.|+.|+.+|++++|++..+ ..+|+|||+||++|.|++
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 99999999999999999999999999999965 8889999999999999999999863 489999999999999999
Q ss_pred hhhccccccEEEEcCCccccCcccccccceEEEeecccccccccCCCCCCccceeeccccc--CCCCchhhhcCCCcceE
Q 038480 458 CEVEKEKENFLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINK--LDTITSNFFDFMPSLRV 535 (850)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~ 535 (850)
++.+.+++++++..+.+....|....+..+|++++++|.+..++....+++|++|.+..|. +..++..||..|+.|++
T Consensus 496 s~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrV 575 (889)
T KOG4658|consen 496 SDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRV 575 (889)
T ss_pred ccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEE
Confidence 9888888888888887777788888999999999999999999888999999999999996 78889999999999999
Q ss_pred EEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccceeecc---------cccccCCCccEEeccCCCCC
Q 038480 536 LNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 536 L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~ 606 (850)
|||++|..+.++|++|+.|.+||||+++++.++.||.++++|++|.+|++. .....+++|++|.+......
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc
Confidence 999999999999999999999999999999999999999999999999998 23345999999999876522
Q ss_pred CCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCe
Q 038480 607 ADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDK 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 686 (850)
. +...+.++.+|++|+.+.+...+...+..+.....+.+..+.+.+..+.. .... +++..+.+|+.
T Consensus 656 ~------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~-~~~~~l~~L~~ 721 (889)
T KOG4658|consen 656 N------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLI-SSLGSLGNLEE 721 (889)
T ss_pred c------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceee-cccccccCcce
Confidence 1 55678889999999999987666533344433333334444555433332 2222 45788999999
Q ss_pred eeeccCCCCcccccccccCCCCCCC-CCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCC-C-CC
Q 038480 687 LDFAYCSNLEEFNYVELRTAREPYG-FDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGE-V-PG 763 (850)
Q Consensus 687 L~l~~~~~l~~l~~~~~~~~~~~~~-l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~-~-~~ 763 (850)
|.|.+|...+.. ..+........ |+++..+.+.+|.....+.|....|+|+.|.+..|..++++++...... . ..
T Consensus 722 L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~ 799 (889)
T KOG4658|consen 722 LSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKEL 799 (889)
T ss_pred EEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccE
Confidence 999999766522 22221111112 7789999999999999998988999999999999999999876322111 0 12
Q ss_pred CCcCCCccEe-eccccccccccccCCCCCCCccEEeeccCCCCCCCCCCCcccccC---ceEEEehhhhhhccccccccc
Q 038480 764 LNPFAKLQCL-RLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLDINSARER---KIAIRGEQRWWNELKWEDQDT 839 (850)
Q Consensus 764 ~~~~~~L~~L-~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~~~---l~~~~~~~~~~~~l~w~~~~~ 839 (850)
...|+++..+ .+.+.+.+..+.+....+++|+.+.+..||+++++|......... ......+.+|-+.++|+++..
T Consensus 800 i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 879 (889)
T KOG4658|consen 800 ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELT 879 (889)
T ss_pred EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhh
Confidence 3456666666 567777777777777778889999999999999999976553222 233345677888999999987
Q ss_pred cccc
Q 038480 840 LRTF 843 (850)
Q Consensus 840 ~~~~ 843 (850)
+..+
T Consensus 880 ~~~~ 883 (889)
T KOG4658|consen 880 KLRF 883 (889)
T ss_pred hhhc
Confidence 7655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-63 Score=608.70 Aligned_cols=633 Identities=20% Similarity=0.280 Sum_probs=454.1
Q ss_pred CcccchhHHHHHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEe---cCC-----------
Q 038480 130 PTIVGLESTLDKVWRCFE--EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVV---SKD----------- 193 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 193 (850)
+.+|||++.++++..++. .+++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 468999999999999885 3578999999999999999999999987 678988887742 111
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh
Q 038480 194 MQ-LERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL 272 (850)
Q Consensus 194 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 272 (850)
.+ ...++++++.++......... ....+++.++++|+||||||||+..+|+.+.....+.++|++||||||+..++..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 01 123445555554331111111 1256788899999999999999999999887666666789999999999999988
Q ss_pred ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhc
Q 038480 273 MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRS 352 (850)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~ 352 (850)
++..++|+++.|+++|||+||+++||... ..+.++.+++++|+++|+|+|||++++|++|++ ++..+|+.++++++..
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNG 417 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Confidence 88889999999999999999999998765 334568899999999999999999999999998 5789999999998764
Q ss_pred cCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHHHHHHh
Q 038480 353 ASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIGVLVQA 432 (850)
Q Consensus 353 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~ 432 (850)
. ++.+..+|++||++|+++..|.||+++|+||.++.++ .|..|++.+.+.. +..++.|+++
T Consensus 418 ~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~k 478 (1153)
T PLN03210 418 L------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDK 478 (1153)
T ss_pred c------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhc
Confidence 3 3479999999999998746999999999999887554 4778888865432 1228899999
Q ss_pred hhccccCcceEEEhhhHHHHHHHHHhhhcc--ccccEEEEcCC---------ccc-----------------cCcccccc
Q 038480 433 CLLEEVGTNFVKMHDVIRDMSLWIACEVEK--EKENFLVSTGV---------QLS-----------------IAPEVRKW 484 (850)
Q Consensus 433 ~ll~~~~~~~~~mHdlv~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~-----------------~~~~~~~~ 484 (850)
||++.. ...+.|||++|++|+.++++... .+..++....+ +.. ....+..+
T Consensus 479 sLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m 557 (1153)
T PLN03210 479 SLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557 (1153)
T ss_pred CCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence 999875 46799999999999999876421 11222221100 000 00012223
Q ss_pred c-------------------------------ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcc
Q 038480 485 R-------------------------------DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSL 533 (850)
Q Consensus 485 ~-------------------------------~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 533 (850)
+ ++|.|.+.++.+..+|......+|+.|++.+|.+..++.. +..+++|
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~L 636 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGL 636 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCC
Confidence 3 3555555555555555555667888888888877766655 5778888
Q ss_pred eEEEccCCCCCcccChhhccccCCCeEeeccc-ccccccchhhcCCccceeecc--------cccccCCCccEEeccCCC
Q 038480 534 RVLNLSKNLSLKQLPSEISKLVSLQYLNLSET-SIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCG 604 (850)
Q Consensus 534 ~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~ 604 (850)
++|+|+++..++.+|. ++.+++|++|++++| .+..+|..+++|++|+.|+++ .....+++|+.|++.+|.
T Consensus 637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 8888888767777874 778888888888887 567888888888888888886 111257788888888875
Q ss_pred CCCCCCCCc-cc-----ccCCccccHHHhccCCCCCEEEEEeCchhhhh----hh-hcCCCccccceEEEeeecCCCCcc
Q 038480 605 FTADPVPED-SV-----LFGGSEILVEELINLKHLDVLTVSLRSFCALQ----KL-WSSPKLQSSTKSLQLRECKDSKSL 673 (850)
Q Consensus 605 ~~~~~~~~~-~~-----~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~----~l-~~~~~~~~~L~~L~l~~~~~~~~~ 673 (850)
.... +|.. .. ........++....+++|+.|.+..+....+. .+ ......+++|+.|++++|.....+
T Consensus 716 ~L~~-~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 716 RLKS-FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred Cccc-cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 3221 0000 00 00000000011112334444433321110000 00 000112357888888888777777
Q ss_pred ccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceec
Q 038480 674 NISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEII 753 (850)
Q Consensus 674 ~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~ 753 (850)
| .+++++++|+.|+|++|..++.+ |... .+++|+.|++++|..+..+|.+ .++|++|+|++ +.++.+|
T Consensus 795 P-~si~~L~~L~~L~Ls~C~~L~~L-------P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~-n~i~~iP 862 (1153)
T PLN03210 795 P-SSIQNLHKLEHLEIENCINLETL-------PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSR-TGIEEVP 862 (1153)
T ss_pred C-hhhhCCCCCCEEECCCCCCcCee-------CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCC-CCCccCh
Confidence 6 45778888888888888777765 2222 5788888888888877766643 46888888887 4566666
Q ss_pred cccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCCC
Q 038480 754 SVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLD 811 (850)
Q Consensus 754 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~ 811 (850)
. .+..+++|+.|+|++|++++.++.....+++|+.+.+++|++|+.++..
T Consensus 863 ~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 863 W--------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred H--------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 5 6788999999999999999999988889999999999999999987664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-45 Score=388.15 Aligned_cols=277 Identities=38% Similarity=0.639 Sum_probs=231.3
Q ss_pred hhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC--
Q 038480 135 LESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF-- 210 (850)
Q Consensus 135 r~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-- 210 (850)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. .++.+|+.++|+.++...+...+++.|+.+++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999996 4689999999999999999999999999999883
Q ss_pred ---CCCCHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhhccC-cceEeccCCCh
Q 038480 211 ---GNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSLMGA-QKKFKIECLRD 286 (850)
Q Consensus 211 ---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 286 (850)
...+.++....+.+.++++++||||||||+...|+.+...++....|++||||||+..++..++. ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34678889999999999999999999999999999988888777789999999999999877665 67899999999
Q ss_pred hhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhccCCCCCCchhhHhH
Q 038480 287 KEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRSASEFPGMGKEVYPL 366 (850)
Q Consensus 287 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 366 (850)
+||++||++.++.......+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999765523345567789999999999999999999999766677899999998888765544455789999
Q ss_pred HHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCC
Q 038480 367 LKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGF 413 (850)
Q Consensus 367 l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 413 (850)
+.+||+.||+ ++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4.9e-21 Score=237.26 Aligned_cols=297 Identities=23% Similarity=0.223 Sum_probs=180.6
Q ss_pred cccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 483 KWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
.++++++|++++|++........+++|++|++++|.+.+..+..++.+++|++|+|++|...+.+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56677777777777765433355777888888877776555555777888888888877444567777788888888888
Q ss_pred cccccc-cccchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCC
Q 038480 563 SETSIK-ELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKH 632 (850)
Q Consensus 563 s~~~i~-~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 632 (850)
++|.+. .+|..++++++|++|+++ ..++.+++|++|++.+|.+.+ ..+..+.++++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------------~~p~~l~~l~~ 261 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG--------------PIPSSLGNLKN 261 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc--------------ccChhHhCCCC
Confidence 887766 567777888888888776 335677778888887776432 23445666777
Q ss_pred CCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCC
Q 038480 633 LDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGF 712 (850)
Q Consensus 633 L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l 712 (850)
|+.|+++.|.+... ++.....+++|+.|++++|.....++ ..+..+++|+.|++++|.....+ +.....+
T Consensus 262 L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-------~~~~~~l 331 (968)
T PLN00113 262 LQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-------PVALTSL 331 (968)
T ss_pred CCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-------ChhHhcC
Confidence 77777776654321 11112223567777777665433333 34556667777777766433222 2223346
Q ss_pred CCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceecccccc---------------CCC-CCCCcCCCccEeec
Q 038480 713 DSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKL---------------GEV-PGLNPFAKLQCLRL 775 (850)
Q Consensus 713 ~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~---------------~~~-~~~~~~~~L~~L~L 775 (850)
++|+.|++.+|.....+| .++.+++|+.|++++|.....++..... +.. ..+..+++|+.|.+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 667777776665443444 3556666666666665433333220000 000 13445667777777
Q ss_pred cccccccccccCCCCCCCccEEeeccCC
Q 038480 776 QDLSNLEKIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 776 ~~~~~l~~i~~~~~~~~~L~~L~i~~C~ 803 (850)
++|.-...++.....+++|+.|++++|.
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 7665444455555567777777776653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.9e-20 Score=230.34 Aligned_cols=305 Identities=22% Similarity=0.177 Sum_probs=160.0
Q ss_pred ccccccceEEEeeccccccc-cc-CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCC
Q 038480 480 EVRKWRDRRRISLLRNKIVA-LS-ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSL 557 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~-l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L 557 (850)
.+..+++++.|++++|.+.. +| .+.++++|++|++++|.+.+..+..++.+++|++|+|++|...+.+|..++++++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 34555667777777666543 22 34566677777777766655545556667777777777663334566666777777
Q ss_pred CeEeecccccc-cccchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHh
Q 038480 558 QYLNLSETSIK-ELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEEL 627 (850)
Q Consensus 558 ~~L~Ls~~~i~-~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 627 (850)
++|++++|.+. .+|..++++++|++|++. ..+..+++|++|++.+|.+.+ ..+..+
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------~~p~~~ 304 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG--------------EIPELV 304 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc--------------CCChhH
Confidence 77777777665 566667777777777665 234456667777776665432 123344
Q ss_pred ccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccc------
Q 038480 628 INLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYV------ 701 (850)
Q Consensus 628 ~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~------ 701 (850)
.++++|+.|+++.|...... +.....+++|+.|++++|.....++ ..+..+++|+.|++++|.....++..
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred cCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 55666666666655443211 1111223456666666655333333 33455566666666655322111000
Q ss_pred -----------cccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCC
Q 038480 702 -----------ELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAK 769 (850)
Q Consensus 702 -----------~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~ 769 (850)
....+...+.+++|+.|++.+|.....+| .+..+++|+.|++++|.....++. ....+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~ 453 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS--------RKWDMPS 453 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh--------hhccCCC
Confidence 00001112234555555555554332333 244555555555555433222221 3345666
Q ss_pred ccEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCC
Q 038480 770 LQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPL 810 (850)
Q Consensus 770 L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~ 810 (850)
|+.|++++|.-...++.. ...++|+.|++++|.-...+|.
T Consensus 454 L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred CcEEECcCceeeeecCcc-cccccceEEECcCCccCCccCh
Confidence 666666665544443332 2346677777776643334443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1e-22 Score=214.14 Aligned_cols=284 Identities=22% Similarity=0.314 Sum_probs=151.4
Q ss_pred cceEEEeeccccccc--c-cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhh-ccccCCCeE
Q 038480 485 RDRRRISLLRNKIVA--L-SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEI-SKLVSLQYL 560 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~--l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~l~~L~~L 560 (850)
+.+|.+.+..|++.. + +++..+..|.+|+|++|.++..|.. +..-+++-+|+||+| +|+.+|.++ -+|..|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhh
Confidence 345555555555432 2 3345666666666666666666655 566666666666666 666666543 356666666
Q ss_pred eecccccccccchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCC
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLK 631 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 631 (850)
|||+|.+..||+.+..|.+|++|.++ ..+.++++|++|++++...+... .+..+..|.
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N-------------~Ptsld~l~ 222 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN-------------IPTSLDDLH 222 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc-------------CCCchhhhh
Confidence 67766666666666666667666666 23445555566666655433222 233344455
Q ss_pred CCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCC
Q 038480 632 HLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYG 711 (850)
Q Consensus 632 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 711 (850)
+|..++++.|+...++. ..-...+|+.|+|++|. ++.+.. ......+|++|+++.| .+..+ |.....
T Consensus 223 NL~dvDlS~N~Lp~vPe---cly~l~~LrrLNLS~N~-iteL~~-~~~~W~~lEtLNlSrN-QLt~L-------P~avcK 289 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPE---CLYKLRNLRRLNLSGNK-ITELNM-TEGEWENLETLNLSRN-QLTVL-------PDAVCK 289 (1255)
T ss_pred hhhhccccccCCCcchH---HHhhhhhhheeccCcCc-eeeeec-cHHHHhhhhhhccccc-hhccc-------hHHHhh
Confidence 55555555555433332 11222455555555554 233221 1233445556666555 33333 222234
Q ss_pred CCCccEEecccCC-CCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCC
Q 038480 712 FDSLQRVTIDCCK-KLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNAL 789 (850)
Q Consensus 712 l~~L~~L~L~~~~-~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 789 (850)
+++|++|.+.+|. ....+| .++.+.+|+.+...+ +.++-+|. ++..+++|+.|.|+. +.|-.+|..++
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE--------glcRC~kL~kL~L~~-NrLiTLPeaIH 359 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE--------GLCRCVKLQKLKLDH-NRLITLPEAIH 359 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCch--------hhhhhHHHHHhcccc-cceeechhhhh
Confidence 5555555555553 122333 255555666655554 34444443 555566666666654 34555555555
Q ss_pred CCCCccEEeeccCCCCC
Q 038480 790 SFPDLLELFVSECPKLK 806 (850)
Q Consensus 790 ~~~~L~~L~i~~C~~L~ 806 (850)
-+|.|+.|++.+.|+|.
T Consensus 360 lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hcCCcceeeccCCcCcc
Confidence 56666666666666655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-21 Score=203.75 Aligned_cols=328 Identities=18% Similarity=0.242 Sum_probs=222.6
Q ss_pred ccccCcccccc-cceEEEeecccccccc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-h
Q 038480 474 QLSIAPEVRKW-RDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-S 549 (850)
Q Consensus 474 ~~~~~~~~~~~-~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~ 549 (850)
.+..+|.+... .++.+|++.+|.|..+ ..+..++.||+|+|+.|.+..++...|..-.+|++|+|++| .|+.+- .
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccc
Confidence 44455555444 4588899988888776 34577888899999999888888777777788999999998 776653 4
Q ss_pred hhccccCCCeEeecccccccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCC
Q 038480 550 EISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGG 619 (850)
Q Consensus 550 ~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 619 (850)
.|..+.+|-+|.|+.|.++.||.- |.+|++|+.|++. -.+.+|++|+.|.+..|.+...
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL----------- 260 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL----------- 260 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc-----------
Confidence 677788899999999999988864 5569999999887 3457888888888888875432
Q ss_pred ccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccc
Q 038480 620 SEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFN 699 (850)
Q Consensus 620 ~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 699 (850)
.-..+-.|.+++.|++..|....+..-+ .-.++.|+.|+++.|. +..+...+...+++|+.|++++| .+.+++
T Consensus 261 ---~DG~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l~ 333 (873)
T KOG4194|consen 261 ---DDGAFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRLD 333 (873)
T ss_pred ---cCcceeeecccceeecccchhhhhhccc--ccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccCC
Confidence 1123556778888888888776654321 1234678888888876 44444456677788888888887 455452
Q ss_pred cccccCCCCCCCCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccc
Q 038480 700 YVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQD 777 (850)
Q Consensus 700 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~ 777 (850)
...+..+..|++|.|+.| .+..+. .+..+++|+.|+|+.|. +.-.+.. ....+..+|+|+.|.|.+
T Consensus 334 ------~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IED----aa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 334 ------EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED----AAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred ------hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec----chhhhccchhhhheeecC
Confidence 222335678888888887 455554 25678888888888754 3222221 112456688888888888
Q ss_pred ccccccccc-CCCCCCCccEEeeccCCCCCCCCCC-Cccc-------ccCceEEEehhhhhhcccccc
Q 038480 778 LSNLEKIYW-NALSFPDLLELFVSECPKLKKLPLD-INSA-------RERKIAIRGEQRWWNELKWED 836 (850)
Q Consensus 778 ~~~l~~i~~-~~~~~~~L~~L~i~~C~~L~~Lp~~-~~~~-------~~~l~~~~~~~~~~~~l~w~~ 836 (850)
++++.|+. .+..+++|++|++.+.+ +.++... +.+. ...-..|+|+..|. .+|.-
T Consensus 402 -Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl--~qWl~ 465 (873)
T KOG4194|consen 402 -NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWL--AQWLY 465 (873)
T ss_pred -ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHH--HHHHH
Confidence 46787775 35678888888887653 3333211 1110 11225688998887 34543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=4.9e-22 Score=209.04 Aligned_cols=319 Identities=20% Similarity=0.297 Sum_probs=249.0
Q ss_pred cEEEEcCCccccCc-ccccccceEEEeecccccccc-cCCCCCCccceeecccccC--CCCchhhhcCCCcceEEEccCC
Q 038480 466 NFLVSTGVQLSIAP-EVRKWRDRRRISLLRNKIVAL-SETPTCPHLVTLFLAINKL--DTITSNFFDFMPSLRVLNLSKN 541 (850)
Q Consensus 466 ~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~~~~l-~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~~ 541 (850)
.|+...+.++...| ++..+.++.||++..|++..+ ..+..++.||++.+..|++ .++|+++| .|..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 45555555555554 567889999999999998877 5678999999999999986 46888855 5999999999999
Q ss_pred CCCcccChhhccccCCCeEeecccccccccch-hhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCC
Q 038480 542 LSLKQLPSEISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPE 612 (850)
Q Consensus 542 ~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~ 612 (850)
.+.+.|..+...+++-.|+||+|+|..+|.. +-+|+-|-+||++ ..+..|.+|++|.+++|.+.
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~------ 186 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN------ 186 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh------
Confidence 9999999999999999999999999999977 4589999999998 55678889999999988742
Q ss_pred cccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccC
Q 038480 613 DSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYC 692 (850)
Q Consensus 613 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 692 (850)
..-+..|.++++|+.|.++....+ +..++.+...+.+|..++++.|. +..+| ..+-++++|+.|++++|
T Consensus 187 --------hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 187 --------HFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred --------HHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcC
Confidence 234556667777778877765442 34445555556789999998776 56666 45778899999999999
Q ss_pred CCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccc-cceeccccccCCCCCCCcCCCc
Q 038480 693 SNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYE-MDEIISVWKLGEVPGLNPFAKL 770 (850)
Q Consensus 693 ~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~-l~~i~~~~~~~~~~~~~~~~~L 770 (850)
.++++ ... .+.-.+|++|+++.| .++.+| .+..++.|+.|.+.++.. .+-|| .+++.+..|
T Consensus 256 -~iteL-~~~------~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiP--------SGIGKL~~L 318 (1255)
T KOG0444|consen 256 -KITEL-NMT------EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIP--------SGIGKLIQL 318 (1255)
T ss_pred -ceeee-ecc------HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCc--------cchhhhhhh
Confidence 55555 111 123579999999999 677777 488999999999876432 12333 378899999
Q ss_pred cEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCCCCcccccCceEEE
Q 038480 771 QCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLDINSARERKIAIR 823 (850)
Q Consensus 771 ~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~~~l~~~~ 823 (850)
+.+...+ ++|+-.|.+...|+.|+.|.+. |..|..||..+.- +..+++.+
T Consensus 319 evf~aan-N~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHl-L~~l~vLD 368 (1255)
T KOG0444|consen 319 EVFHAAN-NKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHL-LPDLKVLD 368 (1255)
T ss_pred HHHHhhc-cccccCchhhhhhHHHHHhccc-ccceeechhhhhh-cCCcceee
Confidence 9999988 5788889899999999999996 7789899987744 45555544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.1e-20 Score=195.94 Aligned_cols=300 Identities=18% Similarity=0.246 Sum_probs=215.2
Q ss_pred ccccccceEEEeecccccccccCCCCC-CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCC
Q 038480 480 EVRKWRDRRRISLLRNKIVALSETPTC-PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSL 557 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L 557 (850)
.+.++.+++.+++.+|.++.+|.+... .+|+.|+|.+|.++.+..+.+..++.||+||||.| .|..+|. ++..-.++
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNI 175 (873)
T ss_pred HHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCc
Confidence 345667888888888888888887554 45888888888888887777888888888888888 7777764 45555778
Q ss_pred CeEeecccccccccc-hhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHh
Q 038480 558 QYLNLSETSIKELPN-ELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEEL 627 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 627 (850)
++|+|++|.|+.+-. .|..|.+|-+|.++ ..+..|++|+.|++..|.+.- ..--.+
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri--------------ve~ltF 241 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI--------------VEGLTF 241 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee--------------ehhhhh
Confidence 888888888886643 36666677777776 345567778888877776432 112345
Q ss_pred ccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCC
Q 038480 628 INLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAR 707 (850)
Q Consensus 628 ~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 707 (850)
.+|++|+.|.+..|++..+..- ..-.+.+++.|+|+.|. +..+.-.++-+++.|+.|++++| .++.+....|+
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws--- 314 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS--- 314 (873)
T ss_pred cCchhhhhhhhhhcCcccccCc--ceeeecccceeecccch-hhhhhcccccccchhhhhccchh-hhheeecchhh---
Confidence 6777777777777777665542 12234688899998887 45554466778999999999998 56656333443
Q ss_pred CCCCCCCccEEecccCCCCCCCcc--cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccc
Q 038480 708 EPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIY 785 (850)
Q Consensus 708 ~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~ 785 (850)
..++|+.|+|+.| .++.++. +..|..|+.|+|+. +.++.+.. ..+..+.+|++|+|+.+.--..+.
T Consensus 315 ---ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-------~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 315 ---FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-------GAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred ---hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh-------hHHHHhhhhhhhcCcCCeEEEEEe
Confidence 5789999999998 5777764 77889999999998 56777754 356778999999999854322222
Q ss_pred ---cCCCCCCCccEEeeccCCCCCCCCCCCcc
Q 038480 786 ---WNALSFPDLLELFVSECPKLKKLPLDINS 814 (850)
Q Consensus 786 ---~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~ 814 (850)
.....+++|++|.+.+. +|+++|--..+
T Consensus 383 Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfs 413 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS 413 (873)
T ss_pred cchhhhccchhhhheeecCc-eeeecchhhhc
Confidence 23456999999999876 67776654333
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=3.9e-18 Score=211.27 Aligned_cols=311 Identities=21% Similarity=0.290 Sum_probs=230.8
Q ss_pred CCccccCcccccccceEEEeecccccccccC-CCCCCccceeeccccc-CCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINK-LDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
+..+...|....+.+++.|++.+|.+..++. +..+++|+.|+++++. +..+|. +..+++|+.|+|++|..+..+|.
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch
Confidence 3334444555567899999999999988854 5789999999999875 656654 78899999999999988999999
Q ss_pred hhccccCCCeEeeccc-ccccccchhhcCCccceeecc--cc----cccCCCccEEeccCCCCCCCCCCCcc-ccc---C
Q 038480 550 EISKLVSLQYLNLSET-SIKELPNELKALTNLKCWNLE--QL----ISSFSDLRVLRMLDCGFTADPVPEDS-VLF---G 618 (850)
Q Consensus 550 ~i~~l~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~l~--~~----i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~---~ 618 (850)
+++++++|++|++++| .++.+|..+ ++++|++|+++ .. ....++|+.|++.+|.+...+..... ... .
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccc
Confidence 9999999999999997 788999877 79999999987 11 12346889999998886653321000 000 0
Q ss_pred Cc----------ccc-HHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCee
Q 038480 619 GS----------EIL-VEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKL 687 (850)
Q Consensus 619 ~~----------~~~-~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 687 (850)
.. ... .......++|+.|+++.|.. +..++.....+++|+.|++++|..++.+|.. + ++++|+.|
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L 830 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--LVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESL 830 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCC--ccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEE
Confidence 00 000 00011235788888886642 2233444455689999999999988888732 3 68999999
Q ss_pred eeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCc
Q 038480 688 DFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNP 766 (850)
Q Consensus 688 ~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 766 (850)
++++|..+..+ +. ...+|+.|+|.+| .+..+| ++..+++|+.|+|++|+.++.++. ....
T Consensus 831 ~Ls~c~~L~~~-------p~---~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------~~~~ 891 (1153)
T PLN03210 831 DLSGCSRLRTF-------PD---ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------NISK 891 (1153)
T ss_pred ECCCCCccccc-------cc---cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc--------cccc
Confidence 99999887755 11 2578999999998 566677 588999999999999999999876 6778
Q ss_pred CCCccEeeccccccccccccCC-------------CCCCCccEEeeccCCCCCCC
Q 038480 767 FAKLQCLRLQDLSNLEKIYWNA-------------LSFPDLLELFVSECPKLKKL 808 (850)
Q Consensus 767 ~~~L~~L~L~~~~~l~~i~~~~-------------~~~~~L~~L~i~~C~~L~~L 808 (850)
+++|+.|.+++|++|..++... ..+|....+.+.+|.+|..-
T Consensus 892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 9999999999999998765421 23555567788889887643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.9e-20 Score=188.02 Aligned_cols=303 Identities=24% Similarity=0.319 Sum_probs=193.9
Q ss_pred ccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhcccc
Q 038480 476 SIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLV 555 (850)
Q Consensus 476 ~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~ 555 (850)
..++..+.+.++..|+++.|++..+|.|.+|..|..|.+..|.+..+|....+.+.+|.+|||++| .++++|..++.+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLr 275 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLR 275 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhh
Confidence 356778888899999999999999999999999999999999999999998889999999999999 9999999999999
Q ss_pred CCCeEeecccccccccchhhcCCccceeecc--------cccccCCC---ccEEeccCCCCCCCCC--CCcccc--cCCc
Q 038480 556 SLQYLNLSETSIKELPNELKALTNLKCWNLE--------QLISSFSD---LRVLRMLDCGFTADPV--PEDSVL--FGGS 620 (850)
Q Consensus 556 ~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~---L~~L~l~~~~~~~~~~--~~~~~~--~~~~ 620 (850)
+|.+||+|+|.|+.+|.++++| +|+.|-+. ..+-+.+. |++|.- ...+..+ +..+.. ....
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCCcccccccCCCC
Confidence 9999999999999999999999 89888775 11111111 222211 1111111 000000 0001
Q ss_pred cccHHHhccCCCCCEEEEEeCchhhhhh-hhcCCCccccceEEEeeecC-----------------------CCCccccc
Q 038480 621 EILVEELINLKHLDVLTVSLRSFCALQK-LWSSPKLQSSTKSLQLRECK-----------------------DSKSLNIS 676 (850)
Q Consensus 621 ~~~~~~L~~L~~L~~L~l~~~~~~~l~~-l~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~~~ 676 (850)
.........+.+.+.|+++.-..+.++. .+.... ..-.+..+++.|+ ....++ .
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~-~ 429 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP-L 429 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch-H
Confidence 1122222334444555554433333221 111000 0112233333332 122222 2
Q ss_pred cccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccc-cCCCCceEEeecccccceeccc
Q 038480 677 YLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLA-FAPNLKFVHIERCYEMDEIISV 755 (850)
Q Consensus 677 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~-~l~~L~~L~L~~c~~l~~i~~~ 755 (850)
.++.+++|..|++++| -+.++ |...+.+..|+.|+++.| ....+|... .+..|+.+-. ..+.+..+++
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~L-------P~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla-s~nqi~~vd~- 498 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDL-------PEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLA-SNNQIGSVDP- 498 (565)
T ss_pred HHHhhhcceeeecccc-hhhhc-------chhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHh-ccccccccCh-
Confidence 3455666677777666 23333 333335566777777766 344444322 2333333333 3355666654
Q ss_pred cccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCC
Q 038480 756 WKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 756 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~ 803 (850)
..++.+.+|.+|+|.+ ..+..+|...++|.+|++|.+++.|
T Consensus 499 ------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 ------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 3578899999999998 4789999999999999999999985
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=4.9e-17 Score=163.77 Aligned_cols=258 Identities=25% Similarity=0.305 Sum_probs=188.6
Q ss_pred ceEEEeecccccccc-cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 486 DRRRISLLRNKIVAL-SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
.+..+.++.|++..+ ++..++..|.+|.+++|.+...|+. ++.+..++.|+.+.| .+.++|..++.+..|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccc
Confidence 355677777877766 5667788888888888888777776 777888888888888 8888888888888888888888
Q ss_pred cccccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEE
Q 038480 565 TSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVL 636 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 636 (850)
|.+.++|++++.+..|..|+.. +.++++.+|..|++.+|.... .+++.-+++.|+.+
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~---------------l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA---------------LPENHIAMKRLKHL 188 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh---------------CCHHHHHHHHHHhc
Confidence 8888888888888888777765 555666777777777776443 33444447777777
Q ss_pred EEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCcc
Q 038480 637 TVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQ 716 (850)
Q Consensus 637 ~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~ 716 (850)
+...|-.+.++. ....+.+|..|++..|. +..+| .+..|..|++|+++.| .++.++ ......+++|.
T Consensus 189 d~~~N~L~tlP~---~lg~l~~L~~LyL~~Nk-i~~lP--ef~gcs~L~Elh~g~N-~i~~lp------ae~~~~L~~l~ 255 (565)
T KOG0472|consen 189 DCNSNLLETLPP---ELGGLESLELLYLRRNK-IRFLP--EFPGCSLLKELHVGEN-QIEMLP------AEHLKHLNSLL 255 (565)
T ss_pred ccchhhhhcCCh---hhcchhhhHHHHhhhcc-cccCC--CCCccHHHHHHHhccc-HHHhhH------HHHhcccccce
Confidence 777666555443 33445577777777766 55555 4778888888888877 444331 11122578899
Q ss_pred EEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccc
Q 038480 717 RVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIY 785 (850)
Q Consensus 717 ~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~ 785 (850)
.|+++.| +++.+| .+..+.+|++|++|+ +.+..+|. .++++ .|+.|.+.++| +++|-
T Consensus 256 vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~--------sLgnl-hL~~L~leGNP-lrTiR 313 (565)
T KOG0472|consen 256 VLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPY--------SLGNL-HLKFLALEGNP-LRTIR 313 (565)
T ss_pred eeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCc--------ccccc-eeeehhhcCCc-hHHHH
Confidence 9999998 677777 477889999999987 56777776 77888 89999999876 45544
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.5e-14 Score=161.63 Aligned_cols=248 Identities=20% Similarity=0.188 Sum_probs=157.4
Q ss_pred cEEEEcCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCc
Q 038480 466 NFLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLK 545 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~ 545 (850)
..+......+...|.. -..+++.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++| .+.
T Consensus 204 ~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chh
Confidence 3444444455544432 124788888988888888754 57889999998888877642 467888888888 777
Q ss_pred ccChhhccccCCCeEeecccccccccchhhcCCccceeecc-ccccc----CCCccEEeccCCCCCCCCCCCcccccCCc
Q 038480 546 QLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE-QLISS----FSDLRVLRMLDCGFTADPVPEDSVLFGGS 620 (850)
Q Consensus 546 ~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-~~i~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 620 (850)
.+|... .+|+.|++++|+++.+|.. +++|+.|+++ ..+.. ..+|+.|++.+|.+...+
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP----------- 338 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP----------- 338 (788)
T ss_pred hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCcccccc-----------
Confidence 777533 5688888888888888763 3567777776 22222 234666666666644311
Q ss_pred cccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCccccc
Q 038480 621 EILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNY 700 (850)
Q Consensus 621 ~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 700 (850)
. ...+|+.|+++.|.+..++.+ ..+|+.|++++|. +..++. + ..+|+.|++++| .+..+
T Consensus 339 -----~--lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~LP~--l--~~~L~~LdLs~N-~Lt~L-- 397 (788)
T PRK15387 339 -----T--LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLPA--L--PSGLKELIVSGN-RLTSL-- 397 (788)
T ss_pred -----c--cccccceEecCCCccCCCCCC------Ccccceehhhccc-cccCcc--c--ccccceEEecCC-cccCC--
Confidence 0 113677778877776654432 2466777777665 334431 1 246778888777 34433
Q ss_pred ccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 701 VELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 701 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
+. .+++|+.|++++|. +..+|.+ +.+|+.|++++ +.++.+|. .+..+++|+.|+|++++
T Consensus 398 -----P~---l~s~L~~LdLS~N~-LssIP~l--~~~L~~L~Ls~-NqLt~LP~--------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 398 -----PV---LPSELKELMVSGNR-LTSLPML--PSGLLSLSVYR-NQLTRLPE--------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----CC---cccCCCEEEccCCc-CCCCCcc--hhhhhhhhhcc-CcccccCh--------HHhhccCCCeEECCCCC
Confidence 11 24577888888873 5556532 34677788877 44666654 56677788888887764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=7.1e-14 Score=160.72 Aligned_cols=250 Identities=18% Similarity=0.177 Sum_probs=184.9
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
+-..|+++.+.++.+|... .++|+.|.+.+|.++.+|. .+++|++|+|++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4567899999999887632 3589999999999998875 2689999999999 89999853 468999999999
Q ss_pred ccccccchhhcCCccceeecc-ccc----ccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEe
Q 038480 566 SIKELPNELKALTNLKCWNLE-QLI----SSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSL 640 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~-~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 640 (850)
.++.+|... .+|+.|++. ..+ ..+++|+.|++++|.+...+. ...+|+.|.++.
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~------------------lp~~L~~L~Ls~ 331 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA------------------LPSELCKLWAYN 331 (788)
T ss_pred chhhhhhch---hhcCEEECcCCccccccccccccceeECCCCccccCCC------------------Cccccccccccc
Confidence 999888643 456677776 222 234689999999988654211 123466777887
Q ss_pred CchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEec
Q 038480 641 RSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTI 720 (850)
Q Consensus 641 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L 720 (850)
|.+..++.+ +.+|+.|++++|. ++.+|. + .++|+.|++++| .+..+ +. .+.+|+.|++
T Consensus 332 N~L~~LP~l------p~~Lq~LdLS~N~-Ls~LP~--l--p~~L~~L~Ls~N-~L~~L-------P~---l~~~L~~LdL 389 (788)
T PRK15387 332 NQLTSLPTL------PSGLQELSVSDNQ-LASLPT--L--PSELYKLWAYNN-RLTSL-------PA---LPSGLKELIV 389 (788)
T ss_pred Ccccccccc------ccccceEecCCCc-cCCCCC--C--Ccccceehhhcc-ccccC-------cc---cccccceEEe
Confidence 777665432 3589999999876 555542 2 357888998887 45544 11 2468999999
Q ss_pred ccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeec
Q 038480 721 DCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVS 800 (850)
Q Consensus 721 ~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~ 800 (850)
++| .+..+|.. .++|+.|++++|. ++.+|. .+.+|+.|+++++ .++.+|.....+++|+.|+++
T Consensus 390 s~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 390 SGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChHHhhccCCCeEECC
Confidence 998 46666643 4789999999964 666643 2357889999984 688898888889999999999
Q ss_pred cCC
Q 038480 801 ECP 803 (850)
Q Consensus 801 ~C~ 803 (850)
+++
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 885
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-15 Score=168.96 Aligned_cols=88 Identities=32% Similarity=0.440 Sum_probs=73.7
Q ss_pred cceEEEeecccccccccC-CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeec
Q 038480 485 RDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLS 563 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls 563 (850)
-++++|++++|.+...|. +..+++|+.|.++.|.+..+|.. ...+.+|++|+|.+| .+..+|.++..+++|++|++|
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 358899999998877643 46778899999999988888854 788999999999999 888999999999999999999
Q ss_pred ccccccccchh
Q 038480 564 ETSIKELPNEL 574 (850)
Q Consensus 564 ~~~i~~LP~~i 574 (850)
.|++..+|.-+
T Consensus 123 ~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 123 FNHFGPIPLVI 133 (1081)
T ss_pred hhccCCCchhH
Confidence 99888777543
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=1.5e-13 Score=161.79 Aligned_cols=318 Identities=24% Similarity=0.314 Sum_probs=200.6
Q ss_pred ccccCcccccccceEEEeecccc--cccccC--CCCCCccceeeccccc-CCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 474 QLSIAPEVRKWRDRRRISLLRNK--IVALSE--TPTCPHLVTLFLAINK-LDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 474 ~~~~~~~~~~~~~l~~L~l~~n~--~~~l~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
.....+....+++++.|-+..|. +..++. |..++.|++|++++|. +..+|.. ++++-+||||+|+++ .+..+|
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccccc
Confidence 33334444556689999999886 566655 7889999999999886 5566654 999999999999999 999999
Q ss_pred hhhccccCCCeEeecccc-cccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCC
Q 038480 549 SEISKLVSLQYLNLSETS-IKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGG 619 (850)
Q Consensus 549 ~~i~~l~~L~~L~Ls~~~-i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 619 (850)
.++++|+.|.+||+..+. +..+|..+..|++||+|.+. ..++.+.+|++|....+....
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s------------ 679 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS------------ 679 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch------------
Confidence 999999999999999984 44556666679999999987 234455566666555443221
Q ss_pred ccccHHHhccCCCCCEEEEEeC-chhhhhhhhcCCCccccceEEEeeecCCCCccc--cc--cccC-cCCcCeeeeccCC
Q 038480 620 SEILVEELINLKHLDVLTVSLR-SFCALQKLWSSPKLQSSTKSLQLRECKDSKSLN--IS--YLAD-LKHLDKLDFAYCS 693 (850)
Q Consensus 620 ~~~~~~~L~~L~~L~~L~l~~~-~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~--~l~~-~~~L~~L~l~~~~ 693 (850)
. ..+..+..+..|..+..... ..............+.+|+.|.+.+|....... .. .... ++++..+.+.+|.
T Consensus 680 ~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 680 V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred h-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 1 12233333333332221111 012222233334455788899998887533211 00 1111 4567777777776
Q ss_pred CCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc-cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccE
Q 038480 694 NLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW-LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQC 772 (850)
Q Consensus 694 ~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~ 772 (850)
....+ .|. ...++|+.|.+..|..+..+.+ ...+..++.+.+.. +...... .+...+.||++..
T Consensus 759 ~~r~l---~~~-----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~------~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 759 MLRDL---TWL-----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLR------MLCSLGGLPQLYW 823 (889)
T ss_pred ccccc---chh-----hccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccce------eeecCCCCceeEe
Confidence 66633 221 1478999999999988776653 44555555433322 2222220 0014455666666
Q ss_pred eeccccccccccccCC----CCCCCccEEeeccC-CCCCCCCCCCcccccCceEEEehhh
Q 038480 773 LRLQDLSNLEKIYWNA----LSFPDLLELFVSEC-PKLKKLPLDINSARERKIAIRGEQR 827 (850)
Q Consensus 773 L~L~~~~~l~~i~~~~----~~~~~L~~L~i~~C-~~L~~Lp~~~~~~~~~l~~~~~~~~ 827 (850)
+.+.+. .+..+.... ..+|.+.++.+.+| +++..+|.... ++.+++..+
T Consensus 824 ~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~-----~~~v~~~~~ 877 (889)
T KOG4658|consen 824 LPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW-----LEGVYWEDE 877 (889)
T ss_pred cccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc-----eeeEEehhh
Confidence 666553 255555443 56899999999997 88998887533 345555444
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=2.4e-11 Score=150.22 Aligned_cols=287 Identities=18% Similarity=0.213 Sum_probs=180.7
Q ss_pred CCcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHh
Q 038480 129 EPTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERI 207 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l 207 (850)
.+.++-|+.-.+.+-+. ...+++.|+|++|.||||++.++.+.. . .++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 45678887666555332 357899999999999999999988643 1 589999964 456666777777776
Q ss_pred cC--CC-------------CCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc--ccc-cccccCCCCCCCeEEEEecCch
Q 038480 208 GS--FG-------------NKSLEEKASDIFKILS--KKKFLLLLDDVWERI--DLV-KVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 208 ~~--~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~~~~~l~~~~~gs~iivTtR~~ 267 (850)
+. .. ..+.......+...+. +.+++|||||+.... ... .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 42 00 0112223333333333 689999999996432 112 2222223334567888999973
Q ss_pred hHh--hhcc-CcceEecc----CCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHH
Q 038480 268 DVC--SLMG-AQKKFKIE----CLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPE 340 (850)
Q Consensus 268 ~v~--~~~~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~ 340 (850)
.-. ..+. ......+. +|+.+|+..+|....+... ..+...+|.+.|+|.|+++..++..+.......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 211 1111 12344555 9999999999987665322 244578999999999999999887775432110
Q ss_pred HHHHHHHHHhhccCCCCCC-chhhHhHHHH-hhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccc
Q 038480 341 EWRYAIEMLRRSASEFPGM-GKEVYPLLKF-SYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGV 418 (850)
Q Consensus 341 ~w~~~l~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 418 (850)
......+ .+. ...+...+.- .++.||+ ..+..+...|+++ .++. .+... +..
T Consensus 237 --~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~-~l~~~-----l~~------- 290 (903)
T PRK04841 237 --HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMND-ALIVR-----VTG------- 290 (903)
T ss_pred --hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCH-HHHHH-----HcC-------
Confidence 0001111 110 1245554433 4889999 7999999999997 2332 22221 111
Q ss_pred hhhHHHHHHHHHHhhhccc-c--CcceEEEhhhHHHHHHHHH
Q 038480 419 YNQGYYVIGVLVQACLLEE-V--GTNFVKMHDVIRDMSLWIA 457 (850)
Q Consensus 419 ~~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~~~~~~~~ 457 (850)
.+.+...+++|.+.+++.. . ....|+.|++++++...-.
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2345778999999999753 2 3457899999999988754
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.6e-15 Score=133.07 Aligned_cols=153 Identities=23% Similarity=0.392 Sum_probs=99.2
Q ss_pred cCcccccccceEEEeecccccccc-cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhcccc
Q 038480 477 IAPEVRKWRDRRRISLLRNKIVAL-SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLV 555 (850)
Q Consensus 477 ~~~~~~~~~~l~~L~l~~n~~~~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~ 555 (850)
+.+....++++.+|.++.|.+..+ |.+..+.+|++|.+++|.+..+|.. ++.+++|+.|+++-| .+..+|..+|.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCc
Confidence 344555666677777777776665 4456677777777777777666665 666777777777766 6666777777777
Q ss_pred CCCeEeecccccc--cccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHH
Q 038480 556 SLQYLNLSETSIK--ELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVE 625 (850)
Q Consensus 556 ~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (850)
.|+.|||++|++. .+|-.|-.++.|+.|+++ ..++++++|+.|.+.+|.+. ..+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll---------------~lpk 167 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL---------------SLPK 167 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh---------------hCcH
Confidence 7777777777665 567666666666666665 44566666666666666532 2445
Q ss_pred HhccCCCCCEEEEEeCchhhh
Q 038480 626 ELINLKHLDVLTVSLRSFCAL 646 (850)
Q Consensus 626 ~L~~L~~L~~L~l~~~~~~~l 646 (850)
+++.|+.|+.|.+.+|..+.+
T Consensus 168 eig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred HHHHHHHHHHHhcccceeeec
Confidence 566666666666666555443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.9e-14 Score=159.94 Aligned_cols=276 Identities=21% Similarity=0.232 Sum_probs=160.1
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
++++|....|.+..+-..+.-.+|+++++++|.++.+| ++++.+.+|+.|+..+| .+..+|..+....+|++|.+.+|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 45555555555554333334455666666666666665 55666666666666666 55666666666666666666666
Q ss_pred ccccccchhhcCCccceeecc-cccccCCC---------ccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCE
Q 038480 566 SIKELPNELKALTNLKCWNLE-QLISSFSD---------LRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDV 635 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~-~~i~~l~~---------L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 635 (850)
.++.+|.....++.|++|++. ..+..++. |+.|..+.+.+...+ .+ . =..+..|+.
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-----~~---~------e~~~~~Lq~ 363 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-----SY---E------ENNHAALQE 363 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-----cc---c------chhhHHHHH
Confidence 666666666666666666665 22222221 122222222211100 00 0 012233455
Q ss_pred EEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCc
Q 038480 636 LTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSL 715 (850)
Q Consensus 636 L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L 715 (850)
|.+..|..+.- .++ ....+.+|+.|+|++|. ++.+|.+.+.+++.|+.|++++| .++.+ +.....++.|
T Consensus 364 LylanN~Ltd~-c~p-~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~L-------p~tva~~~~L 432 (1081)
T KOG0618|consen 364 LYLANNHLTDS-CFP-VLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTL-------PDTVANLGRL 432 (1081)
T ss_pred HHHhcCccccc-chh-hhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhh-------hHHHHhhhhh
Confidence 55555544321 111 12234688999998887 67777777889999999999998 66656 2222257888
Q ss_pred cEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCcc
Q 038480 716 QRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLL 795 (850)
Q Consensus 716 ~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~ 795 (850)
++|...+| .+..+|.+..++.|+.+||+. +.++.+.-. ..-.-|+|++|+|+++..+ ..+...|+.++
T Consensus 433 ~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~-------~~~p~p~LkyLdlSGN~~l---~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 433 HTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLP-------EALPSPNLKYLDLSGNTRL---VFDHKTLKVLK 500 (1081)
T ss_pred HHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhh-------hhCCCcccceeeccCCccc---ccchhhhHHhh
Confidence 88888877 677788888999999999975 556554321 1222389999999987642 22333445444
Q ss_pred EEeec
Q 038480 796 ELFVS 800 (850)
Q Consensus 796 ~L~i~ 800 (850)
.+...
T Consensus 501 ~l~~~ 505 (1081)
T KOG0618|consen 501 SLSQM 505 (1081)
T ss_pred hhhhe
Confidence 44443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.3e-12 Score=151.59 Aligned_cols=227 Identities=20% Similarity=0.245 Sum_probs=112.1
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
+++.|++++|+++.+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 444555555554444332 12345555555554444443321 23455555555 4444444432 24555555555
Q ss_pred ccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 566 SIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
+++.+|..+. ++|+.|++++|.++..+. .+ .++|+.|+++.|.+..
T Consensus 273 ~L~~LP~~l~-----------------~sL~~L~Ls~N~Lt~LP~---------------~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 273 KISCLPENLP-----------------EELRYLSVYDNSIRTLPA---------------HL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred ccCccccccC-----------------CCCcEEECCCCccccCcc---------------cc--hhhHHHHHhcCCcccc
Confidence 4444443221 356667777766543211 01 1245556666665544
Q ss_pred hhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC
Q 038480 646 LQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK 725 (850)
Q Consensus 646 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 725 (850)
++. ...++|+.|.+++|. ++.++ ..+ .++|+.|++++| .+..+ +.. ..++|+.|+|++|.
T Consensus 319 LP~-----~l~~sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N-~L~~L-------P~~--lp~~L~~LdLs~N~- 378 (754)
T PRK15370 319 LPE-----TLPPGLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKN-QITVL-------PET--LPPTITTLDVSRNA- 378 (754)
T ss_pred CCc-----cccccceeccccCCc-cccCC-hhh--cCcccEEECCCC-CCCcC-------Chh--hcCCcCEEECCCCc-
Confidence 322 122467777777765 44444 222 257777777777 34433 111 13577778888773
Q ss_pred CCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 726 LKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 726 l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
+..+|.- ..+.|+.|++++| .+..+|.... .....+|++..|.+.+++
T Consensus 379 Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~sl~----~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 379 LTNLPEN-LPAALQIMQASRN-NLVRLPESLP----HFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCCHh-HHHHHHHHhhccC-CcccCchhHH----HHhhcCCCccEEEeeCCC
Confidence 4455431 1235777777774 3455543000 022334667777777654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-14 Score=129.66 Aligned_cols=132 Identities=27% Similarity=0.400 Sum_probs=106.7
Q ss_pred cccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhc
Q 038480 497 IVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKA 576 (850)
Q Consensus 497 ~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~ 576 (850)
+.+++.+.++.+...|.+++|.++.+|+. +..+.+|++|++++| .++++|.+++.+++|+.|+++-|.+..+|.+|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 45567778899999999999999999988 888999999999999 9999999999999999999999999999999999
Q ss_pred CCccceeecc----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 577 LTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 577 L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
++-|+.||+. ..+-.++.|+-|++.+|.+. ..+.+.++|++|+.|.+..|+.-+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe---------------~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---------------ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc---------------cCChhhhhhcceeEEeeccCchhh
Confidence 9988888886 33444555666666666532 245566777777777776655433
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=3.9e-12 Score=147.62 Aligned_cols=215 Identities=20% Similarity=0.246 Sum_probs=143.9
Q ss_pred cCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
.+..+...|.. ...+++.|++++|.++.+|.. -.++|+.|++++|.+..+|..+. .+|+.|++++| .+..+|..
T Consensus 207 s~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N-~L~~LP~~ 280 (754)
T PRK15370 207 DNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPERLP---SALQSLDLFHN-KISCLPEN 280 (754)
T ss_pred cCCCCCcCChh-hccCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChhHh---CCCCEEECcCC-ccCccccc
Confidence 33444444432 235899999999999988653 23589999999999998887643 57999999999 88899987
Q ss_pred hccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC
Q 038480 551 ISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL 630 (850)
Q Consensus 551 i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 630 (850)
+. .+|++|++++|+++.+|..+. ++|+.|++.+|.+...+. .+ .
T Consensus 281 l~--~sL~~L~Ls~N~Lt~LP~~lp-----------------~sL~~L~Ls~N~Lt~LP~---------------~l--~ 324 (754)
T PRK15370 281 LP--EELRYLSVYDNSIRTLPAHLP-----------------SGITHLNVQSNSLTALPE---------------TL--P 324 (754)
T ss_pred cC--CCCcEEECCCCccccCcccch-----------------hhHHHHHhcCCccccCCc---------------cc--c
Confidence 64 589999999999998886432 234455555655443110 01 1
Q ss_pred CCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCC
Q 038480 631 KHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPY 710 (850)
Q Consensus 631 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 710 (850)
++|+.|+++.|.++.++. ..+++|+.|++++|. +..+|. .+ .++|+.|+|++| .+..+ +..
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~-L~~LP~-~l--p~~L~~LdLs~N-~Lt~L-------P~~-- 385 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA-----SLPPELQVLDVSKNQ-ITVLPE-TL--PPTITTLDVSRN-ALTNL-------PEN-- 385 (754)
T ss_pred ccceeccccCCccccCCh-----hhcCcccEEECCCCC-CCcCCh-hh--cCCcCEEECCCC-cCCCC-------CHh--
Confidence 456677777666554432 123578888888875 444442 22 357888888888 44444 211
Q ss_pred CCCCccEEecccCCCCCCCcc-----cccCCCCceEEeeccc
Q 038480 711 GFDSLQRVTIDCCKKLKEVTW-----LAFAPNLKFVHIERCY 747 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l~~-----l~~l~~L~~L~L~~c~ 747 (850)
...+|+.|++++|. +..+|. ...++++..|+|.+|+
T Consensus 386 l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 LPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 13468888888874 555552 2345888889888865
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=7.2e-10 Score=122.80 Aligned_cols=291 Identities=15% Similarity=0.113 Sum_probs=170.6
Q ss_pred CCcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
++.++||+++++++...+.+ .....+.|+|++|+|||++++.++++. ......-.++++.+....+...++..++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 35789999999999998843 344668899999999999999999987 3222233567777777778889999999
Q ss_pred HHhcC----CCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc------ccccccccCCCC-CCCeEEEEecCchhHhh
Q 038480 205 ERIGS----FGNKSLEEKASDIFKILS--KKKFLLLLDDVWERI------DLVKVGVPFPTS-ENASKVVFTTRLVDVCS 271 (850)
Q Consensus 205 ~~l~~----~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~-~~gs~iivTtR~~~v~~ 271 (850)
.++.. ....+.++....+.+.++ +++.+||||+++... .+..+...+... +....+|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 99865 123355667777777775 456899999997532 122222211111 11223555655544322
Q ss_pred hcc-------CcceEeccCCChhhHHHHHHHHhCCC---CCCCCCChHHHHHHHHHHcCCCchHHHHHHhhh--c---CC
Q 038480 272 LMG-------AQKKFKIECLRDKEAWELFLEKVGEE---PLVSHPDIPMLAQAMAKECAGLPLALITIGRAM--G---SK 336 (850)
Q Consensus 272 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l--~---~~ 336 (850)
.+. ....+.+.+++.++..+++...+... ..-.+..++.+++......|..+.|+.++-.+. + +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 221 12468999999999999999876321 111111222233333333455777776654322 1 11
Q ss_pred --CCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCC-C-CCcccCHHHHHHH--HHHcCCC
Q 038480 337 --NTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLF-P-EDYQISKIELIEC--WIGEGFL 410 (850)
Q Consensus 337 --~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f-p-~~~~i~~~~li~~--w~a~g~i 410 (850)
-+.+..+.+.+.+.. ....-.+..||. +.|..+..++.. . +...+....+... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 255666665554421 223446788998 555444333322 1 1123444444432 2222110
Q ss_pred CCCCCccchhhHHHHHHHHHHhhhccc
Q 038480 411 NGFEGMGVYNQGYYVIGVLVQACLLEE 437 (850)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~~~ll~~ 437 (850)
. ..........|+..|...+++..
T Consensus 334 ~---~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 Y---EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred C---CcCcHHHHHHHHHHHHhcCCeEE
Confidence 0 11123445678888888888875
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.27 E-value=1.2e-09 Score=114.39 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=114.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHh-
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF-GNKSLEEKASDIFKIL- 226 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~l~~~l- 226 (850)
.+.+++.|+|++|+||||+++.+++.. .. ..+ .+.|+ +....+..+++..++..++.. ...+.......+.+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999886 21 211 22333 333457788899999888762 2233333444444333
Q ss_pred ----ccCcEEEEEcccCCcc--ccccccc---cCCCCCCCeEEEEecCchhHhhhcc----------CcceEeccCCChh
Q 038480 227 ----SKKKFLLLLDDVWERI--DLVKVGV---PFPTSENASKVVFTTRLVDVCSLMG----------AQKKFKIECLRDK 287 (850)
Q Consensus 227 ----~~k~~LlVlDdv~~~~--~~~~~~~---~l~~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~ 287 (850)
.+++.++|+||++... .++.+.. .-........|++|.... ....+. ....+.+.+++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 5788999999998643 3443321 111122233556665432 221111 1346789999999
Q ss_pred hHHHHHHHHhCCCCCCCC-CChHHHHHHHHHHcCCCchHHHHHHhhh
Q 038480 288 EAWELFLEKVGEEPLVSH-PDIPMLAQAMAKECAGLPLALITIGRAM 333 (850)
Q Consensus 288 e~~~lf~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Plai~~~~~~l 333 (850)
|..+++...+........ .-.++..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999877643321111 1235778999999999999999888865
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=3.9e-11 Score=122.81 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=104.1
Q ss_pred ccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH--------
Q 038480 132 IVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI-------- 203 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-------- 203 (850)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. + ...+ .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 68999999999999988777899999999999999999999986 2 1111 344454444432222 2221
Q ss_pred --HHHhcC--C--C--------CCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc-ccc-------cc---cccCCCCCC
Q 038480 204 --GERIGS--F--G--------NKSLEEKASDIFKILS--KKKFLLLLDDVWERI-DLV-------KV---GVPFPTSEN 256 (850)
Q Consensus 204 --~~~l~~--~--~--------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~~---~~~l~~~~~ 256 (850)
.+.+.. . . ..........+.+.+. +++.+||+||+.... ... .+ ...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111211 0 0 1122333444444443 356999999997554 111 11 111112 23
Q ss_pred CeEEEEecCchhHhhh--------ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 257 ASKVVFTTRLVDVCSL--------MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 257 gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
...+|+++.+...... .+....+.+++|+.+++++++...+... ... +.-++..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3445555554544332 2233459999999999999999976443 122 22355679999999999998864
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=6.2e-13 Score=134.47 Aligned_cols=283 Identities=20% Similarity=0.191 Sum_probs=157.9
Q ss_pred CCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
+.++.+.|. .-......+.|..|.|+.+|. |..+++||.|+|++|.|+.+.+..|.+++.|-.|-+-++..|+.+|.
T Consensus 55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 345555543 223466778888888888854 57888888888888888888888888888887777766448888886
Q ss_pred -hhccccCCCeEeecccccccccc-hhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCC-CCCccccc
Q 038480 550 -EISKLVSLQYLNLSETSIKELPN-ELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADP-VPEDSVLF 617 (850)
Q Consensus 550 -~i~~l~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~ 617 (850)
.+++|..|+.|.+.-|++..++. .+..|++|..|.+. ..+..+..++++.+..|.+...- ++-.++.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~- 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD- 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH-
Confidence 46778888888888888886654 46777777777765 34556667777776665532210 0000000
Q ss_pred CCccccHHHhccCCCCCEEEEEeCchhhhh--hhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCC
Q 038480 618 GGSEILVEELINLKHLDVLTVSLRSFCALQ--KLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNL 695 (850)
Q Consensus 618 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 695 (850)
....+.+.+...-..-..+....+.... .+... ...+.+-..+.|......|...+..+++|++|++++| .+
T Consensus 213 --~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i 286 (498)
T KOG4237|consen 213 --LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KI 286 (498)
T ss_pred --HhhchhhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-cc
Confidence 0000111111110000000000000000 00000 0011111111222223333344677788888888877 45
Q ss_pred cccccccccCCCCCCCCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEe
Q 038480 696 EEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCL 773 (850)
Q Consensus 696 ~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L 773 (850)
+.+. ...+.....++.|.|..| ++..+. .+..+..|+.|+|.+ +.++.+.+ ..+..+.+|.+|
T Consensus 287 ~~i~------~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~-------~aF~~~~~l~~l 351 (498)
T KOG4237|consen 287 TRIE------DGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP-------GAFQTLFSLSTL 351 (498)
T ss_pred chhh------hhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec-------ccccccceeeee
Confidence 4441 122235677788888877 455554 266778888888877 45555544 145555666666
Q ss_pred eccc
Q 038480 774 RLQD 777 (850)
Q Consensus 774 ~L~~ 777 (850)
.|-.
T Consensus 352 ~l~~ 355 (498)
T KOG4237|consen 352 NLLS 355 (498)
T ss_pred ehcc
Confidence 6654
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=8.6e-09 Score=113.00 Aligned_cols=292 Identities=14% Similarity=0.127 Sum_probs=171.7
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CEEEEEEecCCCCHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~ 202 (850)
+.++||++++++|...+.+ ...+.+.|+|++|+|||++++.+++......... -.++|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999864 3456799999999999999999998752111111 24678888877788889999
Q ss_pred HHHHhc---C---CCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc-c----cccccccC-CCCC--CCeEEEEecCc
Q 038480 203 IGERIG---S---FGNKSLEEKASDIFKILS--KKKFLLLLDDVWERI-D----LVKVGVPF-PTSE--NASKVVFTTRL 266 (850)
Q Consensus 203 i~~~l~---~---~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~l-~~~~--~gs~iivTtR~ 266 (850)
|++++. . ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999983 2 122344556666666663 568899999997541 1 22221110 1111 22344555543
Q ss_pred hhHhhhcc-------CcceEeccCCChhhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHcCCCchHHHHHH-hhh---
Q 038480 267 VDVCSLMG-------AQKKFKIECLRDKEAWELFLEKVGE--EPLVSHPDIPMLAQAMAKECAGLPLALITIG-RAM--- 333 (850)
Q Consensus 267 ~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~-~~l--- 333 (850)
......+. ....+.+.+++.+|..+++...+.. .....+++..+....++..+.|.|..+..+. .+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43321111 1246899999999999999988642 1111223333344556667778875443222 211
Q ss_pred -c-C--CCCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCC--CCCcccCHHHHHHHH--H
Q 038480 334 -G-S--KNTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLF--PEDYQISKIELIECW--I 405 (850)
Q Consensus 334 -~-~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f--p~~~~i~~~~li~~w--~ 405 (850)
. . .-+.+..+.+.+.+.. ....-++..||. +.|..+..++.. .++..+...++...+ +
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 1244555555444321 223446678887 566554443321 134446666666633 2
Q ss_pred HcCCCCCCCCccchhhHHHHHHHHHHhhhcccc
Q 038480 406 GEGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV 438 (850)
Q Consensus 406 a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 438 (850)
++.+ .. .+.......+++..|...|++...
T Consensus 321 ~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 10 123346677788999999988753
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.15 E-value=3e-09 Score=119.14 Aligned_cols=286 Identities=18% Similarity=0.166 Sum_probs=187.3
Q ss_pred cccchhHHHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhc
Q 038480 131 TIVGLESTLDKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIG 208 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~ 208 (850)
..|-|. .+++.|.. .+.+.+.|..++|.|||||+.+..... ..-..+.|.++.+. .++..+..-++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 345564 45555554 378999999999999999999998743 34457999998764 568888888888877
Q ss_pred CC---------------CCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc--c-cccccccCCCCCCCeEEEEecCchh
Q 038480 209 SF---------------GNKSLEEKASDIFKILS--KKKFLLLLDDVWERI--D-LVKVGVPFPTSENASKVVFTTRLVD 268 (850)
Q Consensus 209 ~~---------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~-~~~~~~~l~~~~~gs~iivTtR~~~ 268 (850)
.. ...+...+.+.+...+. .++..+||||-.-.. . -..+...+.....+-.+|||||+..
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 41 12233334444444443 468999999986321 1 2222222334456788999999754
Q ss_pred Hhhh--cc-CcceEecc----CCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHH
Q 038480 269 VCSL--MG-AQKKFKIE----CLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEE 341 (850)
Q Consensus 269 v~~~--~~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~ 341 (850)
-+.. +. .+..++++ .++.+|+-++|....+.+- .+...+.+.+..+|-+-|+..++=.++.+.+.+.
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 4221 11 11223332 4889999999988764332 2345788999999999999999888884444433
Q ss_pred HHHHHHHHhhccCCCCCCchhhHhH-HHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchh
Q 038480 342 WRYAIEMLRRSASEFPGMGKEVYPL-LKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYN 420 (850)
Q Consensus 342 w~~~l~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 420 (850)
-...+. +..+.+... ..--++.||+ .++..++-||+++.= -..|+..- +.++
T Consensus 246 ~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L------------tg~~ 298 (894)
T COG2909 246 SLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL------------TGEE 298 (894)
T ss_pred Hhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH------------hcCC
Confidence 222111 111122222 2335789999 799999999998642 12333321 2346
Q ss_pred hHHHHHHHHHHhhhcccc---CcceEEEhhhHHHHHHHHH
Q 038480 421 QGYYVIGVLVQACLLEEV---GTNFVKMHDVIRDMSLWIA 457 (850)
Q Consensus 421 ~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~~~ 457 (850)
.|..++++|.+++|+-.. ....|+.|.+..||.+.--
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 788889999999998754 6789999999999987443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=2.2e-12 Score=130.56 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=159.7
Q ss_pred cccccccCCCCC-CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecc-ccccccc
Q 038480 495 NKIVALSETPTC-PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSE-TSIKELP 571 (850)
Q Consensus 495 n~~~~l~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~-~~i~~LP 571 (850)
.++.++|. ++ +.-..+.|..|.|+.+|+..|+.+++||.||||+| .|+.+ |..|..+..|-.|-+-+ |+|+.+|
T Consensus 56 ~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34444443 22 35678889999999999999999999999999999 78765 77888899887776665 8999999
Q ss_pred ch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeC
Q 038480 572 NE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLR 641 (850)
Q Consensus 572 ~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 641 (850)
++ |+.|..|+.|.+. ..+..+++|..|.+.+|.+.... . ..+..+..++.+.+..|
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-----------~---~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-----------K---GTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-----------c---ccccchhccchHhhhcC
Confidence 75 7889999988887 66788899999999888754310 0 12333444444444433
Q ss_pred chhh---hhhhhc-------CCCccccceEEEeeecCCCCcccccc-ccCcCCcCeeeeccCCCCcccccccccCCCCCC
Q 038480 642 SFCA---LQKLWS-------SPKLQSSTKSLQLRECKDSKSLNISY-LADLKHLDKLDFAYCSNLEEFNYVELRTAREPY 710 (850)
Q Consensus 642 ~~~~---l~~l~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 710 (850)
.+.. ++.+.. ..+..+......+.+.. ....+... ......+.+=-.+.| ....+ .+ ...++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d-~~d~~-cP----~~cf~ 271 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSED-FPDSI-CP----AKCFK 271 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHH-hcccchhhhhhhHHhHHHhhcccc-CcCCc-Ch----HHHHh
Confidence 3111 110000 00000011111111110 01111000 011111110011111 11111 00 01134
Q ss_pred CCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccccc-C
Q 038480 711 GFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-N 787 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~ 787 (850)
.+++|++|++++| .++.+. ++..+..++.|.|.. +.++.+-. ..+.++..|+.|+|+++ +++.+.+ .
T Consensus 272 ~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~-------~~f~~ls~L~tL~L~~N-~it~~~~~a 341 (498)
T KOG4237|consen 272 KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS-------GMFQGLSGLKTLSLYDN-QITTVAPGA 341 (498)
T ss_pred hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH-------HhhhccccceeeeecCC-eeEEEeccc
Confidence 6889999999988 455553 578889999999987 56666644 25677889999999985 4555443 3
Q ss_pred CCCCCCccEEeec
Q 038480 788 ALSFPDLLELFVS 800 (850)
Q Consensus 788 ~~~~~~L~~L~i~ 800 (850)
+....+|.+|.+-
T Consensus 342 F~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 342 FQTLFSLSTLNLL 354 (498)
T ss_pred ccccceeeeeehc
Confidence 4445555555543
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.06 E-value=3.2e-08 Score=105.39 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=146.3
Q ss_pred cccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.|+|++..++++..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHHH
Confidence 589999999999888863 345668899999999999999999986 2 222 12222211112222 12222
Q ss_pred HhcCCC-------CCCHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhhcc--Cc
Q 038480 206 RIGSFG-------NKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSLMG--AQ 276 (850)
Q Consensus 206 ~l~~~~-------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--~~ 276 (850)
.++... ..-.....+.+...+.+.+..+|+|+..+...+.. +++ +.+-|..||+...+...+. ..
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcc
Confidence 222100 00011223345555566666667766544433321 111 2444556777644432221 13
Q ss_pred ceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhc------CC--CCHHHHHHHHHH
Q 038480 277 KKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMG------SK--NTPEEWRYAIEM 348 (850)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~------~~--~~~~~w~~~l~~ 348 (850)
..+.+.+++.+|..+++.+.+....... .++....|++.|+|.|..+..++..+. .. -+.+..+
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~----- 223 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL----- 223 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH-----
Confidence 4678999999999999998886443222 255678999999999987755554321 00 0111111
Q ss_pred HhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHh-HhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHH
Q 038480 349 LRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLL-YCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIG 427 (850)
Q Consensus 349 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 427 (850)
.....+...|..++. +.+..+. ..+.++.+ .+..+.+.... | ......+..++
T Consensus 224 -------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e 277 (305)
T TIGR00635 224 -------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYE 277 (305)
T ss_pred -------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhh
Confidence 122224456777887 5555554 54656543 34443333221 1 12234556677
Q ss_pred -HHHHhhhcccc
Q 038480 428 -VLVQACLLEEV 438 (850)
Q Consensus 428 -~L~~~~ll~~~ 438 (850)
.|++++|+...
T Consensus 278 ~~Li~~~li~~~ 289 (305)
T TIGR00635 278 PYLLQIGFLQRT 289 (305)
T ss_pred HHHHHcCCcccC
Confidence 59999998754
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=5.2e-11 Score=128.23 Aligned_cols=217 Identities=22% Similarity=0.204 Sum_probs=101.0
Q ss_pred CCCCccceeecccccCCCC----chhhhcCCCcceEEEccCCCCCcc-------cChhhccccCCCeEeecccccc-ccc
Q 038480 504 PTCPHLVTLFLAINKLDTI----TSNFFDFMPSLRVLNLSKNLSLKQ-------LPSEISKLVSLQYLNLSETSIK-ELP 571 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~-------lp~~i~~l~~L~~L~Ls~~~i~-~LP 571 (850)
..+.+|+.|.+.++.++.. ....+...+.|+.|+++++ .+.. ++..+..+++|+.|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3455577777777765331 1223556667777777776 3332 3344566777777777777665 334
Q ss_pred chhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC-CCCCEEEEEeCchhh--hhh
Q 038480 572 NELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL-KHLDVLTVSLRSFCA--LQK 648 (850)
Q Consensus 572 ~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~~~~--l~~ 648 (850)
..+..+.+ . ++|++|++.+|.+.... .......+..+ ++|+.|+++.|.+.. ...
T Consensus 99 ~~~~~l~~-----------~-~~L~~L~ls~~~~~~~~----------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 99 GVLESLLR-----------S-SSLQELKLNNNGLGDRG----------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHHHHHhc-----------c-CcccEEEeeCCccchHH----------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 44443332 1 33555555555432100 01122334444 556666666555431 111
Q ss_pred hhcCCCccccceEEEeeecCCCCc-cc--cccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC
Q 038480 649 LWSSPKLQSSTKSLQLRECKDSKS-LN--ISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK 725 (850)
Q Consensus 649 l~~~~~~~~~L~~L~l~~~~~~~~-~~--~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 725 (850)
+......++.|+.|++++|.-... .. ...+..+++|+.|++++|. +........ ......+++|++|++++|.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l--~~~~~~~~~L~~L~ls~n~- 232 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASAL--AETLASLKSLEVLNLGDNN- 232 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHH--HHHhcccCCCCEEecCCCc-
Confidence 111112223555666655542110 00 0122334566666666663 221100000 0111235666666666663
Q ss_pred CCCC--ccc-c----cCCCCceEEeeccc
Q 038480 726 LKEV--TWL-A----FAPNLKFVHIERCY 747 (850)
Q Consensus 726 l~~l--~~l-~----~l~~L~~L~L~~c~ 747 (850)
+... ..+ . ..+.|++|++++|.
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 2221 111 1 13566666666653
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=5.8e-08 Score=104.06 Aligned_cols=270 Identities=14% Similarity=0.071 Sum_probs=143.5
Q ss_pred CcccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..|+|++..++.+..++.. ...+.+.|+|++|+||||+|+.+++.. . ..+ .++..+.. .....+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~~-~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPAL-EKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecccc-cChHHHHHHH
Confidence 4589999999998877752 345678899999999999999999987 2 222 12222211 1111222222
Q ss_pred HHhcCCC-----CCC--HHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhhcc--C
Q 038480 205 ERIGSFG-----NKS--LEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSLMG--A 275 (850)
Q Consensus 205 ~~l~~~~-----~~~--~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--~ 275 (850)
..+.... +.+ .....+.+...+.+.+..+|+|+..+...... .++ +.+-|..|++...+...+. .
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhc
Confidence 2222100 000 01112233444444555555555433221110 111 2344556777544432221 1
Q ss_pred cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhccCC
Q 038480 276 QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRSASE 355 (850)
Q Consensus 276 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~ 355 (850)
...+.+++++.++..+++.+.+.......+ ++.+..|++.|+|.|..+..+...+. .|.... ....-.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC
Confidence 346899999999999999998876543322 45689999999999976655544321 121100 000000
Q ss_pred CCCCchhhHhHHHHhhcCCChHHHHHHHh-HhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHH-HHHHhh
Q 038480 356 FPGMGKEVYPLLKFSYDSLSSDVLRSCLL-YCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIG-VLVQAC 433 (850)
Q Consensus 356 ~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ 433 (850)
...-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... | ...+..++.++ .|++.+
T Consensus 240 -~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 240 -KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred -HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcC
Confidence 00001233444556777887 4555553 66667655 34444443321 1 11233444455 788888
Q ss_pred hcccc
Q 038480 434 LLEEV 438 (850)
Q Consensus 434 ll~~~ 438 (850)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 88754
No 33
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2e-09 Score=103.57 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=90.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCC----CCEEEEEEecCCCCHH---HHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPND----FDVVIWVVVSKDMQLE---RIQEKIGERIGSFGNKSLEEKASDIFK 224 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~l~~ 224 (850)
+++.|+|.+|+||||+++.++.+. ..... +..++|+......... .+...+..+.... ...... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-IAPIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-hhhhHH---HHHH
Confidence 579999999999999999999887 32222 4567777776554332 3444444433321 111111 1222
Q ss_pred H-hccCcEEEEEcccCCccc---------ccccc-ccCCC-CCCCeEEEEecCchhH---hhhccCcceEeccCCChhhH
Q 038480 225 I-LSKKKFLLLLDDVWERID---------LVKVG-VPFPT-SENASKVVFTTRLVDV---CSLMGAQKKFKIECLRDKEA 289 (850)
Q Consensus 225 ~-l~~k~~LlVlDdv~~~~~---------~~~~~-~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~e~ 289 (850)
. -+.+++++|+|++++... +..+. ..+.. ..++.+++||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 257899999999975432 11221 11222 2467899999998766 33334446899999999999
Q ss_pred HHHHHHHh
Q 038480 290 WELFLEKV 297 (850)
Q Consensus 290 ~~lf~~~~ 297 (850)
.+++.+.+
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=2.1e-10 Score=123.47 Aligned_cols=267 Identities=19% Similarity=0.138 Sum_probs=157.7
Q ss_pred cccceEEEeeccccccc-----cc-CCCCCCccceeecccccCCCC------chhhhcCCCcceEEEccCCCCCcccChh
Q 038480 483 KWRDRRRISLLRNKIVA-----LS-ETPTCPHLVTLFLAINKLDTI------TSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~-----l~-~~~~~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
....++.+.+.++.+.. ++ .+...++|+.|.++++.+... ....+..+++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34568888888888733 22 346677899999998876521 2234777899999999999443455556
Q ss_pred hccccC---CCeEeecccccccccc-hhhcCCccceeecccccccC-CCccEEeccCCCCCCCCCCCcccccCCccccHH
Q 038480 551 ISKLVS---LQYLNLSETSIKELPN-ELKALTNLKCWNLEQLISSF-SDLRVLRMLDCGFTADPVPEDSVLFGGSEILVE 625 (850)
Q Consensus 551 i~~l~~---L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (850)
+..+.+ |++|++++|++..-+. .+. ..+..+ ++|+.|++.+|.++... ......
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-----------~~l~~~~~~L~~L~L~~n~l~~~~----------~~~~~~ 159 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLA-----------KGLKDLPPALEKLVLGRNRLEGAS----------CEALAK 159 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHH-----------HHHHhCCCCceEEEcCCCcCCchH----------HHHHHH
Confidence 665555 9999999998763110 010 112344 67777888887755310 112344
Q ss_pred HhccCCCCCEEEEEeCchhh--hhhhhcCCCccccceEEEeeecCCCCcccc----ccccCcCCcCeeeeccCCCCcccc
Q 038480 626 ELINLKHLDVLTVSLRSFCA--LQKLWSSPKLQSSTKSLQLRECKDSKSLNI----SYLADLKHLDKLDFAYCSNLEEFN 699 (850)
Q Consensus 626 ~L~~L~~L~~L~l~~~~~~~--l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~l~~l~ 699 (850)
.+..+++|+.|+++.+.+.. +..+.......++|+.|++++|.. ..... ..+..+++|+.|++++|. +....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~ 237 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNN-LTDAG 237 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHHHHHHHHHhcccCCCCEEecCCCc-CchHH
Confidence 56677788888888776542 222221122235788888888752 22211 235567889999999884 33210
Q ss_pred cccccCCCCCCCCCCccEEecccCCCCCC-----C-cccccCCCCceEEeecccccceeccccccCCCCCCCcC-CCccE
Q 038480 700 YVELRTAREPYGFDSLQRVTIDCCKKLKE-----V-TWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPF-AKLQC 772 (850)
Q Consensus 700 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-----l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~-~~L~~ 772 (850)
..... .......+.|++|++.+|. ++. + ..+..+++|++|++++|..-..- .... . .....+ +.|+.
T Consensus 238 ~~~l~-~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~-~~~~-~--~~~~~~~~~~~~ 311 (319)
T cd00116 238 AAALA-SALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLL-A--ESLLEPGNELES 311 (319)
T ss_pred HHHHH-HHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH-HHHH-H--HHHhhcCCchhh
Confidence 00000 0000024789999999884 331 1 12455688999999986543221 0000 0 133445 67888
Q ss_pred eecccc
Q 038480 773 LRLQDL 778 (850)
Q Consensus 773 L~L~~~ 778 (850)
|++.+.
T Consensus 312 ~~~~~~ 317 (319)
T cd00116 312 LWVKDD 317 (319)
T ss_pred cccCCC
Confidence 887664
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=8.4e-10 Score=104.32 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=50.9
Q ss_pred CcccccccceEEEeecccccccccCCC-CCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhh-cccc
Q 038480 478 APEVRKWRDRRRISLLRNKIVALSETP-TCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEI-SKLV 555 (850)
Q Consensus 478 ~~~~~~~~~l~~L~l~~n~~~~l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~l~ 555 (850)
.+...++.+++.|++.+|.|..+..+. .+.+|++|++++|.++.+.. +..+++|+.|++++| .++.++..+ ..++
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCC
Confidence 344455567899999999998887775 57899999999999887764 788999999999999 888887655 4689
Q ss_pred CCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCE
Q 038480 556 SLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDV 635 (850)
Q Consensus 556 ~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 635 (850)
+|+.|++++|+|..+-. +. .++.+++|+.|++.+|.++.. ......-+..+++|+.
T Consensus 89 ~L~~L~L~~N~I~~l~~-l~------------~L~~l~~L~~L~L~~NPv~~~-----------~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE-LE------------PLSSLPKLRVLSLEGNPVCEK-----------KNYRLFVIYKLPSLKV 144 (175)
T ss_dssp T--EEE-TTS---SCCC-CG------------GGGG-TT--EEE-TT-GGGGS-----------TTHHHHHHHH-TT-SE
T ss_pred cCCEEECcCCcCCChHH-hH------------HHHcCCCcceeeccCCcccch-----------hhHHHHHHHHcChhhe
Confidence 99999999998876521 11 235677788888888775431 1223445667777877
Q ss_pred EEEE
Q 038480 636 LTVS 639 (850)
Q Consensus 636 L~l~ 639 (850)
|+-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 7754
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.8e-10 Score=116.26 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=149.1
Q ss_pred CCCCCccceeecccccCCCCch-hhhcCCCcceEEEccCCCCCccc---ChhhccccCCCeEeecccccccccchhhcCC
Q 038480 503 TPTCPHLVTLFLAINKLDTITS-NFFDFMPSLRVLNLSKNLSLKQL---PSEISKLVSLQYLNLSETSIKELPNELKALT 578 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~ 578 (850)
-.++++|+.+.|.++.+...+. .....|++++.||||+| .+... -.-...|++|+.|+|+.|.+...-++..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--- 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--- 192 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc---
Confidence 3678999999999988655443 45788999999999999 65543 3345679999999999998764322111
Q ss_pred ccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCcccc
Q 038480 579 NLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSS 658 (850)
Q Consensus 579 ~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~ 658 (850)
-..++.|+.|.+..|+++. ......+...++|..|.+..|....... .....+..
T Consensus 193 ----------~~~l~~lK~L~l~~CGls~-------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i~~~ 247 (505)
T KOG3207|consen 193 ----------TLLLSHLKQLVLNSCGLSW-------------KDVQWILLTFPSLEVLYLEANEIILIKA--TSTKILQT 247 (505)
T ss_pred ----------hhhhhhhheEEeccCCCCH-------------HHHHHHHHhCCcHHHhhhhcccccceec--chhhhhhH
Confidence 1246678888999998652 2345556778899999998885222221 12234467
Q ss_pred ceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC--CCCCcccccCC
Q 038480 659 TKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK--LKEVTWLAFAP 736 (850)
Q Consensus 659 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~--l~~l~~l~~l~ 736 (850)
|+.|+|++|..+..-....+..++.|..|+++.| ++.++..++..+..-...|++|+.|.+..|+. +..+..+..++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 8999999988655444445778899999999988 66666444433232234689999999999964 44444566778
Q ss_pred CCceEEeeccc
Q 038480 737 NLKFVHIERCY 747 (850)
Q Consensus 737 ~L~~L~L~~c~ 747 (850)
+|+.|.+..++
T Consensus 327 nlk~l~~~~n~ 337 (505)
T KOG3207|consen 327 NLKHLRITLNY 337 (505)
T ss_pred hhhhhhccccc
Confidence 88888876543
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=4.4e-08 Score=116.50 Aligned_cols=302 Identities=13% Similarity=0.175 Sum_probs=172.2
Q ss_pred ccchhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC---HHHHHHHHHH
Q 038480 132 IVGLESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ---LERIQEKIGE 205 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 205 (850)
++||+.+++.+...+.. +...++.|.|..|||||+|+++|.+...+.++.|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998865 45679999999999999999999998732222221111111222222 2333344444
Q ss_pred HhcCC----------------------------------C---------CCCHHHHH-----HHHHHHh-ccCcEEEEEc
Q 038480 206 RIGSF----------------------------------G---------NKSLEEKA-----SDIFKIL-SKKKFLLLLD 236 (850)
Q Consensus 206 ~l~~~----------------------------------~---------~~~~~~~~-----~~l~~~l-~~k~~LlVlD 236 (850)
++... + +...+.+. ..+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33110 0 00001111 1122222 3469999999
Q ss_pred cc-CCccc-cc---cccccCCC-CCCCeEEE--EecCch--hHhhhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCC
Q 038480 237 DV-WERID-LV---KVGVPFPT-SENASKVV--FTTRLV--DVCSLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHP 306 (850)
Q Consensus 237 dv-~~~~~-~~---~~~~~l~~-~~~gs~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 306 (850)
|+ |-+.. +. .+...... .-.-..|. .|.+.. .+.........|.|.||+..+.-.+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 53321 11 11111110 00011222 233321 2222223447899999999999999999887643 2
Q ss_pred ChHHHHHHHHHHcCCCchHHHHHHhhhcCC------CCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHH
Q 038480 307 DIPMLAQAMAKECAGLPLALITIGRAMGSK------NTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLR 380 (850)
Q Consensus 307 ~~~~~~~~i~~~~~G~Plai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 380 (850)
...+..+.|.++..|+|+.+..+-+.+..+ .+...|..-...+.. .+..+.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HHH
Confidence 335568999999999999999988888764 344455543322221 11223456678888999999 799
Q ss_pred HHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHHHHHHhhhcccc---------Ccc-eEEEhhhHH
Q 038480 381 SCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV---------GTN-FVKMHDVIR 450 (850)
Q Consensus 381 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---------~~~-~~~mHdlv~ 450 (850)
..+...|++...|. ...|...|-. .....+...++.|....++-.. ... +-..||.|+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999976554 4444433321 1223344444445444444311 111 225788888
Q ss_pred HHHHH
Q 038480 451 DMSLW 455 (850)
Q Consensus 451 ~~~~~ 455 (850)
+.+-.
T Consensus 380 qaaY~ 384 (849)
T COG3899 380 QAAYN 384 (849)
T ss_pred HHHhc
Confidence 87643
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.87 E-value=2e-07 Score=96.16 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=125.3
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF 210 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 210 (850)
+++|.+..+ -+++..+.+.-..+||++|+||||||+.+.... ...| ..+|...+-.+-++++++
T Consensus 31 HLlg~~~~l---rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e----- 94 (436)
T COG2256 31 HLLGEGKPL---RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIE----- 94 (436)
T ss_pred hhhCCCchH---HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHH-----
Confidence 344444443 344455778888899999999999999999876 4444 333333222222222222
Q ss_pred CCCCHHHHHHHH-HHHhccCcEEEEEcccCC--ccccccccccCCCCCCCeEEEE--ecCchhH---hhhccCcceEecc
Q 038480 211 GNKSLEEKASDI-FKILSKKKFLLLLDDVWE--RIDLVKVGVPFPTSENASKVVF--TTRLVDV---CSLMGAQKKFKIE 282 (850)
Q Consensus 211 ~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~ 282 (850)
.- .....+++.+|++|.|.. ..+.+.+ +|.-.+|.-|+| ||.++.. .....-..++.++
T Consensus 95 ----------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk 161 (436)
T COG2256 95 ----------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELK 161 (436)
T ss_pred ----------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeee
Confidence 22 223348999999999963 3333333 555677887777 7776654 2223445789999
Q ss_pred CCChhhHHHHHHHHhCCCCCC---CCCCh-HHHHHHHHHHcCCCchHHHHHHh---hhcCCC---CHHHHHHHHHHHhhc
Q 038480 283 CLRDKEAWELFLEKVGEEPLV---SHPDI-PMLAQAMAKECAGLPLALITIGR---AMGSKN---TPEEWRYAIEMLRRS 352 (850)
Q Consensus 283 ~L~~~e~~~lf~~~~~~~~~~---~~~~~-~~~~~~i~~~~~G~Plai~~~~~---~l~~~~---~~~~w~~~l~~l~~~ 352 (850)
+|+.+|-.+++.+.+...... ....+ ++....+++.++|--.++-.... .+.... ..+..+..+++-...
T Consensus 162 ~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~ 241 (436)
T COG2256 162 PLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSAR 241 (436)
T ss_pred cCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhc
Confidence 999999999999854322211 11112 44678889999997654433222 222211 234444433322111
Q ss_pred cCCCCCCchhhHhHHHHhhcCCChH
Q 038480 353 ASEFPGMGKEVYPLLKFSYDSLSSD 377 (850)
Q Consensus 353 ~~~~~~~~~~~~~~l~~sy~~L~~~ 377 (850)
.....+..=++..++.-|...-.++
T Consensus 242 ~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 242 FDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred cCCCcchHHHHHHHHHHhhccCCcC
Confidence 1111011115677777788777764
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=3.6e-09 Score=100.09 Aligned_cols=115 Identities=28% Similarity=0.357 Sum_probs=53.6
Q ss_pred EcCCccccCcccc-cccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 470 STGVQLSIAPEVR-KWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 470 ~~~~~~~~~~~~~-~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
..+.....+.... .+.+++.|++++|.+..++.+..+++|++|++++|.++.+.+.+...+++|+.|++++| .+..+-
T Consensus 26 L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~ 104 (175)
T PF14580_consen 26 LRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLN 104 (175)
T ss_dssp ----------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCC
T ss_pred ccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChH
Confidence 3444555555554 46789999999999999999999999999999999999987665567999999999999 776653
Q ss_pred --hhhccccCCCeEeecccccccccc----hhhcCCccceeec
Q 038480 549 --SEISKLVSLQYLNLSETSIKELPN----ELKALTNLKCWNL 585 (850)
Q Consensus 549 --~~i~~l~~L~~L~Ls~~~i~~LP~----~i~~L~~L~~L~l 585 (850)
..+..+++|++|++.+|++...+. .+..+++|+.||-
T Consensus 105 ~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 105 ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 356789999999999999986653 2455555555553
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=7.4e-07 Score=101.07 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=121.8
Q ss_pred CCcccchhHHHHHHHHHhcc----C-CceEEEEEcCCCChHHHHHHHHHHhhccC--CCCCC--EEEEEEecCCCCHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE----V-QVGIIGLYGMGGVGKTTLLTQINNKFIDT--PNDFD--VVIWVVVSKDMQLERI 199 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~----~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 199 (850)
++.+.|||+++++|...|.+ . ...++.|+|.+|+|||+.++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999988864 2 23577899999999999999998875211 11222 3677888777788899
Q ss_pred HHHHHHHhcCC---CCCCHHHHHHHHHHHhc---cCcEEEEEcccCCcc-----ccccccccCCCCCCCeEEEE--ecCc
Q 038480 200 QEKIGERIGSF---GNKSLEEKASDIFKILS---KKKFLLLLDDVWERI-----DLVKVGVPFPTSENASKVVF--TTRL 266 (850)
Q Consensus 200 ~~~i~~~l~~~---~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~-----~~~~~~~~l~~~~~gs~iiv--TtR~ 266 (850)
+..|++++... ......+....+...+. ....+||||+++... .+..+... +. ..+++|+| +|.+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecCc
Confidence 99999998541 12233344555555442 224599999997432 12222111 11 23444444 3332
Q ss_pred hhH--------hhhccCcceEeccCCChhhHHHHHHHHhCCCC-CCCCCChHHHHHHHHHHcCCCchHHHHHHhhh
Q 038480 267 VDV--------CSLMGAQKKFKIECLRDKEAWELFLEKVGEEP-LVSHPDIPMLAQAMAKECAGLPLALITIGRAM 333 (850)
Q Consensus 267 ~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 333 (850)
.+. ...++ ...+...+++.++-.+++..++.... .-.+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 222 12222 23477899999999999999886422 11222233344444444455666666555544
No 41
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=8.8e-07 Score=89.50 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=105.6
Q ss_pred HHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 038480 142 VWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASD 221 (850)
Q Consensus 142 l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 221 (850)
+.+++..+..+-+.+||++|+||||||+.+.+.. +... +.||..|....-..-.+.|.++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 3444555788899999999999999999999886 3222 567877766544444444444322
Q ss_pred HHHHhccCcEEEEEcccCC--ccccccccccCCCCCCCeEEEE--ecCchhH---hhhccCcceEeccCCChhhHHHHHH
Q 038480 222 IFKILSKKKFLLLLDDVWE--RIDLVKVGVPFPTSENASKVVF--TTRLVDV---CSLMGAQKKFKIECLRDKEAWELFL 294 (850)
Q Consensus 222 l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~ 294 (850)
=...+.++|.+|++|.|.. ..+.+. .+|...+|.-++| ||.++.. +..+....++-|++|..++...++.
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 215 NEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred HHHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 1233467899999999963 333332 3666778887776 7777655 3334456789999999999999988
Q ss_pred HHhC---CCCC--CCCCC-----hHHHHHHHHHHcCCCch
Q 038480 295 EKVG---EEPL--VSHPD-----IPMLAQAMAKECAGLPL 324 (850)
Q Consensus 295 ~~~~---~~~~--~~~~~-----~~~~~~~i~~~~~G~Pl 324 (850)
+... .... ..-++ ...+.+-++..|.|-..
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7432 2111 01111 23456667777887654
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=5.6e-08 Score=98.12 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=93.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
..+.+.++|++|+|||+|++.+++... .....+.|+.+.... ... ..+.+.++ +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~-------------------~~~~~~~~-~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFS-------------------PAVLENLE-Q 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhh-------------------HHHHhhcc-c
Confidence 346789999999999999999999862 123345677653210 000 01112222 2
Q ss_pred cEEEEEcccCCc---ccccc-ccccCCC-CCCCeEE-EEecCc---------hhHhhhccCcceEeccCCChhhHHHHHH
Q 038480 230 KFLLLLDDVWER---IDLVK-VGVPFPT-SENASKV-VFTTRL---------VDVCSLMGAQKKFKIECLRDKEAWELFL 294 (850)
Q Consensus 230 ~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~i-ivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 294 (850)
.-+||+||+|.. ..|+. +...+.. ...|..+ |+|++. +++.+.+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 348999999853 33442 2111211 1234445 455544 3555666667789999999999999999
Q ss_pred HHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 295 EKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
+.+.......+ +++..-|++.+.|..-++..+
T Consensus 172 ~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 172 RNAYQRGIELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 98864442222 566788888888766555433
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=9.3e-07 Score=97.77 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=106.0
Q ss_pred cccchhHHHHH---HHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGLESTLDK---VWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr~~~~~~---l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++|++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-.+-.+.+.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~-- 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE-- 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH--
Confidence 47888877665 7777777777788899999999999999999876 2332 222222111111122221
Q ss_pred cCCCCCCHHHHHHHHHHH-hccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE--ecCchhH--h-hhccCcceE
Q 038480 208 GSFGNKSLEEKASDIFKI-LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF--TTRLVDV--C-SLMGAQKKF 279 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv--TtR~~~v--~-~~~~~~~~~ 279 (850)
..... ..+++.+|++|+++.. ...+.+...+. .|..++| ||.+... . ........+
T Consensus 83 -------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 83 -------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred -------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceee
Confidence 11111 2467889999999854 23333333222 2444444 3444322 1 112223678
Q ss_pred eccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHh
Q 038480 280 KIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGR 331 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 331 (850)
.+.+++.++...++.+.+.........-.++..+.|++.|+|.+..+..+..
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999998764321000022356678899999999977654443
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.4e-07 Score=95.89 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCC
Q 038480 135 LESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKS 214 (850)
Q Consensus 135 r~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 214 (850)
.+..++.+.+++.......+.|+|..|+|||+||+.+++.. . ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~-~--~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA-E--ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hcCCcEEEEeHHHHHH------hH-----------
Confidence 44567777777655566789999999999999999999886 2 2233456665543211 00
Q ss_pred HHHHHHHHHHHhccCcEEEEEcccCCcc---ccc-cccccCCC-CCCCeEEEEecCchh---------HhhhccCcceEe
Q 038480 215 LEEKASDIFKILSKKKFLLLLDDVWERI---DLV-KVGVPFPT-SENASKVVFTTRLVD---------VCSLMGAQKKFK 280 (850)
Q Consensus 215 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~ 280 (850)
..+.+.+++ .-+||+||++... .|. .+...+.. ...+.++|+||+... +...+.....++
T Consensus 82 -----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 82 -----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred -----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 011122222 2389999997532 222 22221211 122347888887432 222233346799
Q ss_pred ccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHh
Q 038480 281 IECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGR 331 (850)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 331 (850)
+.+++.++...++...+....... -++..+.+++.++|.|..+..+..
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999999987653322122 245567888888888877765443
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.66 E-value=2e-06 Score=97.08 Aligned_cols=242 Identities=16% Similarity=0.191 Sum_probs=138.6
Q ss_pred CcccchhHHHHHHHHHhccC----CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEV----QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
..++|.++.++++.+|+..- ..+.+.|+|++|+||||+|+.+++.. .++ ++-+..+...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 35899999999999998641 26789999999999999999999986 233 2333444433322 2222222
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc------cccccccCCCCCCCeEEEEecCch-hHhh-hc-cCc
Q 038480 206 RIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID------LVKVGVPFPTSENASKVVFTTRLV-DVCS-LM-GAQ 276 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~iivTtR~~-~v~~-~~-~~~ 276 (850)
..... ......++-+||+|+++.... +..+...+. ..+..||+|+.+. .... .+ ...
T Consensus 87 ~~~~~------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 87 EAATS------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred Hhhcc------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccc
Confidence 22110 001113678999999975421 333322222 1233456555432 2211 11 234
Q ss_pred ceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCC---CHHHHHHHHHHHhhcc
Q 038480 277 KKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKN---TPEEWRYAIEMLRRSA 353 (850)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~---~~~~w~~~l~~l~~~~ 353 (850)
..+.+.+++.++....+.+.+.......+ .+....|++.++|....+......+.... +.+....+ ..
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~----~~-- 223 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL----GR-- 223 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh----hc--
Confidence 67899999999999999888755443322 46689999999997766644333333321 22222211 11
Q ss_pred CCCCCCchhhHhHHHHhhc-CCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCC
Q 038480 354 SEFPGMGKEVYPLLKFSYD-SLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGF 413 (850)
Q Consensus 354 ~~~~~~~~~~~~~l~~sy~-~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 413 (850)
......++.++..-+. .-+. .+...+..+. ++. ..+-.|+.|.+....
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~-~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNAD-QALEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHH-HHHHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 1122467777776655 3333 3444332222 222 347789999997654
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=9e-09 Score=106.34 Aligned_cols=150 Identities=21% Similarity=0.216 Sum_probs=95.3
Q ss_pred cccceEEEeeccccccccc---CCCCCCccceeecccccCCCCc--hhhhcCCCcceEEEccCCCCCcccChh--hcccc
Q 038480 483 KWRDRRRISLLRNKIVALS---ETPTCPHLVTLFLAINKLDTIT--SNFFDFMPSLRVLNLSKNLSLKQLPSE--ISKLV 555 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~---~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~l~ 555 (850)
++++++.+++.+..+...+ ....|++++.|+|+.|-+..+. ..+...+++|+.|+|+.| .+...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 4568888889888777665 4578999999999998765433 345788999999999999 55433222 23578
Q ss_pred CCCeEeecccccc--cccchhhcCCccceeeccc---------ccccCCCccEEeccCCCCCCCCCCCcccccCCccccH
Q 038480 556 SLQYLNLSETSIK--ELPNELKALTNLKCWNLEQ---------LISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILV 624 (850)
Q Consensus 556 ~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~l~~---------~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
+|+.|.|+.|.++ .+-.....+++|..|++.. ...-+..|++|++.+|.+...+ ..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-------------~~ 264 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-------------QG 264 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-------------cc
Confidence 9999999999887 3333344556666666651 1123345666666666544321 11
Q ss_pred HHhccCCCCCEEEEEeCchhhh
Q 038480 625 EELINLKHLDVLTVSLRSFCAL 646 (850)
Q Consensus 625 ~~L~~L~~L~~L~l~~~~~~~l 646 (850)
...+.++.|..|+++.+++.++
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cccccccchhhhhccccCcchh
Confidence 2234455555555555554443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1e-08 Score=100.50 Aligned_cols=123 Identities=26% Similarity=0.406 Sum_probs=95.5
Q ss_pred cccccceEEEeecccccccccC-CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCe
Q 038480 481 VRKWRDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQY 559 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~ 559 (850)
...|+.+..++++.|.|+.+.. ..-.|++|.|++++|.+..+.. +..+++|+.||||+| .+.++...--++-|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 3457788888899888887743 3557888999999888876655 778888889999988 77666554556778888
Q ss_pred EeecccccccccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 560 LNLSETSIKELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 560 L~Ls~~~i~~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
|.|++|.|..+ +++++|.+|..||++ ..|++++.|++|.+.+|.+..
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88888888777 577888888888887 667888888888888877543
No 48
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=1.3e-07 Score=86.18 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
.+++.|.|+.|+||||++++++++. . ....+++++............ + ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLADP--------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhhh--------------h-hHHHHHHhhccCC
Confidence 3689999999999999999999887 2 345567777665432111000 0 2233333344478
Q ss_pred EEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh------ccCcceEeccCCChhhH
Q 038480 231 FLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL------MGAQKKFKIECLRDKEA 289 (850)
Q Consensus 231 ~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 289 (850)
.+|+||++....+|......+.+.....+|++|+.+...... .+....++|.||+..|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999888888776666555556789999987766532 12235689999998773
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=3.4e-06 Score=95.50 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEEe
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVVV 190 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~ 190 (850)
.+||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+... -.. .|.-++++..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 579999999999999987654 4567999999999999999988761 111 1112333332
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCchh
Q 038480 191 SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRLVD 268 (850)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~~~ 268 (850)
+....+.++ +++++... ..-..++.-++|||+++... .+..+...+-......++|+||++..
T Consensus 96 as~rgVDdI-ReLIe~a~--------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 96 ASNRGVDEM-AALLERAV--------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred cccccHHHH-HHHHHHHH--------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 222111111 11111110 00113455689999997543 35555444433334677777766543
Q ss_pred H-hhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHh
Q 038480 269 V-CSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIGR 331 (850)
Q Consensus 269 v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 331 (850)
- ...+ .-...|++..++.++..+.+.+.+..+.... ..+..+.|++.++|... |+..+-.
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3 2222 2236799999999999999999876554322 24567889999998664 5554333
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=3.7e-09 Score=112.44 Aligned_cols=165 Identities=25% Similarity=0.310 Sum_probs=93.3
Q ss_pred ccceEEEeeccccccccc-CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 484 WRDRRRISLLRNKIVALS-ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
+..+..+.+..|.+..+| .+..+..|..|+++.|.+...|.. ++.|+ |++|.+++| +++.+|..++.+..|..||.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 334555555555555553 235566666666776666666655 33333 667777766 66777777776666777777
Q ss_pred cccccccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 563 SETSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 563 s~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
+.|.+..+|+.++.|.+|+.|+++ ..+.. -.|..|+++.|++.. .+-++.+|++|+
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~---------------iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISY---------------LPVDFRKMRHLQ 237 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceee---------------cchhhhhhhhhe
Confidence 777777777777777666666665 22221 235566666665332 334556666666
Q ss_pred EEEEEeCchhhhhhhhcCCCccccceEEEeeec
Q 038480 635 VLTVSLRSFCALQKLWSSPKLQSSTKSLQLREC 667 (850)
Q Consensus 635 ~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 667 (850)
.|-+..|...+-+.-.+..+...=.++|+..-|
T Consensus 238 ~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 238 VLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 666666655443322222222222344555544
No 51
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.4e-06 Score=89.51 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=129.2
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
..+.+||++++++...|.. ....-+.|+|..|+|||+.++.|.+.........+ +++|.+....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3478999999999988864 33344899999999999999999998732222233 899999999999999999999
Q ss_pred HhcC--CCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcccc--ccccccCCCCC-CCeEEE--EecCchhHhh-----
Q 038480 206 RIGS--FGNKSLEEKASDIFKILS--KKKFLLLLDDVWERIDL--VKVGVPFPTSE-NASKVV--FTTRLVDVCS----- 271 (850)
Q Consensus 206 ~l~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~~~-~gs~ii--vTtR~~~v~~----- 271 (850)
+++. .......+....+.+.+. ++.+++|||+++....- +.+-..+.... ..++|+ ..+-+.....
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 9975 334566777778887775 58899999999743221 11111111111 134443 3444433322
Q ss_pred ---hccCcceEeccCCChhhHHHHHHHHhC---CCCCCCCCChHHHHHHHHHHcC-CCchHHHHHH
Q 038480 272 ---LMGAQKKFKIECLRDKEAWELFLEKVG---EEPLVSHPDIPMLAQAMAKECA-GLPLALITIG 330 (850)
Q Consensus 272 ---~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~~~-G~Plai~~~~ 330 (850)
.++. ..+...+.+.+|-..++...+. ... ..+...-++...++..-+ -.-.||..+-
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2222 3488999999999999988773 233 333343444444444444 4455554443
No 52
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=1.9e-05 Score=91.11 Aligned_cols=197 Identities=16% Similarity=0.063 Sum_probs=113.4
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CEEEEEEecCC---CCHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DVVIWVVVSKD---MQLERIQEKI 203 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~i 203 (850)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3578999999988888876666789999999999999999998765 222222 12234444321 1222221111
Q ss_pred ---------------HHHhcC-------------------CCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccc
Q 038480 204 ---------------GERIGS-------------------FGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKV 247 (850)
Q Consensus 204 ---------------~~~l~~-------------------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~ 247 (850)
+...+. ....=....+..+.+.++++++.++-|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 111110 00011123467788888888888887776643 346666
Q ss_pred cccCCCCCCCeEEEE--ecCchhH-hhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 248 GVPFPTSENASKVVF--TTRLVDV-CSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 248 ~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
...+....+...|+| ||++... ...+ .....+.+.+++.+|.+.++.+.+.......+ +++.+.|++.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHH
Confidence 555554444444555 5664432 1111 12246789999999999999987754321111 334455555444334
Q ss_pred hHHHHHH
Q 038480 324 LALITIG 330 (850)
Q Consensus 324 lai~~~~ 330 (850)
.|+..++
T Consensus 390 raln~L~ 396 (615)
T TIGR02903 390 KAVNILA 396 (615)
T ss_pred HHHHHHH
Confidence 4444443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=3.4e-09 Score=108.81 Aligned_cols=285 Identities=18% Similarity=0.222 Sum_probs=150.2
Q ss_pred ceEEEeecccccccc---cC-CCCCCccceeeccccc-CCCC-chhhhcCCCcceEEEccCCCCCcccC-h-hhccccCC
Q 038480 486 DRRRISLLRNKIVAL---SE-TPTCPHLVTLFLAINK-LDTI-TSNFFDFMPSLRVLNLSKNLSLKQLP-S-EISKLVSL 557 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l---~~-~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~~~~i~~lp-~-~i~~l~~L 557 (850)
.++.|++.+..-... .. ..+|++++.|.+.+|. +++. ...+-..+++|++|+|..|..++..- . -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466677766543322 11 2678888888888876 3322 22334578889999998876776532 1 23457889
Q ss_pred CeEeeccc-ccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhc----cCCC
Q 038480 558 QYLNLSET-SIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELI----NLKH 632 (850)
Q Consensus 558 ~~L~Ls~~-~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~~ 632 (850)
.+|++++| .|+. .++ +. ...++.+++.+...+|.-. ..+.+. ....
T Consensus 219 ~~lNlSwc~qi~~--~gv------~~-----~~rG~~~l~~~~~kGC~e~----------------~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--NGV------QA-----LQRGCKELEKLSLKGCLEL----------------ELEALLKAAAYCLE 269 (483)
T ss_pred HHhhhccCchhhc--Ccc------hH-----Hhccchhhhhhhhcccccc----------------cHHHHHHHhccChH
Confidence 99999888 3432 111 11 1123333444433344211 111111 1111
Q ss_pred CCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccc-cCcCCcCeeeeccCCCCcccccccccCCCCCCC
Q 038480 633 LDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYL-ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYG 711 (850)
Q Consensus 633 L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 711 (850)
+..+++..+..-.-..+......+..|+.|..++|...++.++..+ .+.++|+.|.+++|..+... .+..+. .+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~--rn 344 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---GFTMLG--RN 344 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---hhhhhh--cC
Confidence 2222222221111111222233345667777777776666554444 34567777777777655432 221121 24
Q ss_pred CCCccEEecccCCCCCCCc--c-cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccC-
Q 038480 712 FDSLQRVTIDCCKKLKEVT--W-LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWN- 787 (850)
Q Consensus 712 l~~L~~L~L~~~~~l~~l~--~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~- 787 (850)
.+.|+.+++.+|.....-. . -.+.|.|+.|.++.|..+++...... . ........|..|.|++||.+.+-...
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-~--~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-S--SSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-h--hccccccccceeeecCCCCchHHHHHH
Confidence 6777777777775443321 1 13567778888877777666411000 0 12344566777777777766553332
Q ss_pred CCCCCCccEEeeccCCCCCC
Q 038480 788 ALSFPDLLELFVSECPKLKK 807 (850)
Q Consensus 788 ~~~~~~L~~L~i~~C~~L~~ 807 (850)
...+++|+.+++.+|....+
T Consensus 422 l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HhhCcccceeeeechhhhhh
Confidence 23466777777776665554
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=6.9e-09 Score=110.43 Aligned_cols=186 Identities=25% Similarity=0.289 Sum_probs=133.6
Q ss_pred ccceEEEeecccccccccC-CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 484 WRDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
+......+++.|.+..+|. ...|..|..+.+..|.+..++.. ++++..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 3455667888888888854 46788899999999998888776 889999999999999 8999999888876 999999
Q ss_pred cccccccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 563 SETSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 563 s~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
++|+++.+|..++.+.+|..|+.+ ..++.+.+|+.|.+..|.+.. .+.++..|+ |.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~---------------lp~El~~Lp-Li 214 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED---------------LPEELCSLP-LI 214 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh---------------CCHHHhCCc-ee
Confidence 999999999999988888888876 445667777777777776432 455666444 66
Q ss_pred EEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccc--cCcCCcCeeeeccC
Q 038480 635 VLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYL--ADLKHLDKLDFAYC 692 (850)
Q Consensus 635 ~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~ 692 (850)
.|+++.|++..++. ....++.|+.|.|++|+ ++.-|.... +...=.++|++..|
T Consensus 215 ~lDfScNkis~iPv---~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKISYLPV---DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCceeecch---hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 77777776655432 23345677777777776 444432211 11222355666555
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=6.4e-06 Score=92.35 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=109.6
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 189 (850)
..++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++.. .-.. .|.-++.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 3579999999999999987653 577899999999999999998875 1111 111122222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCch
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
.+....+.++ ++++..+. ..-..++.-++|+|+++.. .....+...+-....+.++|++|.+.
T Consensus 94 AAs~~~VddI-Reli~~~~--------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 94 AASRTKVEDT-RELLDNVP--------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred ccccCCHHHH-HHHHHHHh--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 2211111111 11111110 0112356679999999743 33444443333333456677766543
Q ss_pred h-Hhhh-ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 268 D-VCSL-MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 268 ~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
. +... ......+++.+++.++....+.+.+....... ..+....|++.++|.+..+..
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3 3211 23346899999999999999988875544222 245578899999998755543
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=9.4e-09 Score=105.64 Aligned_cols=290 Identities=18% Similarity=0.195 Sum_probs=179.3
Q ss_pred CccceeecccccCC--CCchhhhcCCCcceEEEccCCCCCccc-Chhh-ccccCCCeEeeccc-ccccccchhhcCCccc
Q 038480 507 PHLVTLFLAINKLD--TITSNFFDFMPSLRVLNLSKNLSLKQL-PSEI-SKLVSLQYLNLSET-SIKELPNELKALTNLK 581 (850)
Q Consensus 507 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i-~~l~~L~~L~Ls~~-~i~~LP~~i~~L~~L~ 581 (850)
..|+.|.+.++.-. .....+...+++++.|++.+|..+++- -.++ ..+.+|++|++-.| .++.. .+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--~Lk------ 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--SLK------ 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--HHH------
Confidence 46778888877521 122344667888888888888655531 1223 34778888888775 44422 000
Q ss_pred eeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceE
Q 038480 582 CWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKS 661 (850)
Q Consensus 582 ~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~ 661 (850)
.....+++|.+|+++.|.-.. ....-.-..++..++.+...++.-..++.+......+..+..
T Consensus 210 -----~la~gC~kL~~lNlSwc~qi~------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 210 -----YLAEGCRKLKYLNLSWCPQIS------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILK 272 (483)
T ss_pred -----HHHHhhhhHHHhhhccCchhh------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhc
Confidence 123567777777777765211 001111223444455554444433344444444444556677
Q ss_pred EEeeecCCCCccccccc-cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc--c-ccCCC
Q 038480 662 LQLRECKDSKSLNISYL-ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW--L-AFAPN 737 (850)
Q Consensus 662 L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--l-~~l~~ 737 (850)
+++..|..+++..+..+ ..+..|+.|..++|..+... .+ | .+. ...++|+.|.+.+|..+..... + ...+.
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~-~l-~-aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE-VL-W-ALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH-HH-H-HHh--cCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 77888877777653222 35678999999999876643 11 1 111 2569999999999987665542 3 36799
Q ss_pred CceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccc-----ccCCCCCCCccEEeeccCCCCCCCCCCC
Q 038480 738 LKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKI-----YWNALSFPDLLELFVSECPKLKKLPLDI 812 (850)
Q Consensus 738 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-----~~~~~~~~~L~~L~i~~C~~L~~Lp~~~ 812 (850)
|+.+++.+|..+.+-.- .....++|.|+.|.|+.|...+.- .....++..|+.+.+.+||.++.--+..
T Consensus 348 Le~l~~e~~~~~~d~tL------~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTL------ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred hhhhcccccceehhhhH------hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 99999999876655310 024567899999999999876665 2334567889999999999988754443
Q ss_pred cc---cccCceEEEehhhhhhcc
Q 038480 813 NS---ARERKIAIRGEQRWWNEL 832 (850)
Q Consensus 813 ~~---~~~~l~~~~~~~~~~~~l 832 (850)
++ .++....++|+.-..+.+
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred HhhCcccceeeeechhhhhhhhh
Confidence 33 345555566765444443
No 57
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=1.4e-06 Score=88.07 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=97.8
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF 210 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 210 (850)
.++|-......+...........+.|+|..|+|||+|++.+++... .....+.|+++.+ ....+.
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH------
Confidence 3344444444444443333445799999999999999999998862 2233556675432 111111
Q ss_pred CCCCHHHHHHHHHHHhccCcEEEEEcccCCcc---cccc-ccccCCC-CCCCeEEEEecCchh---------HhhhccCc
Q 038480 211 GNKSLEEKASDIFKILSKKKFLLLLDDVWERI---DLVK-VGVPFPT-SENASKVVFTTRLVD---------VCSLMGAQ 276 (850)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~ 276 (850)
...+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++... +.+.+...
T Consensus 86 ----------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~ 154 (233)
T PRK08727 86 ----------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC 154 (233)
T ss_pred ----------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC
Confidence 111122 233489999996432 2221 1111110 123556999887422 22333445
Q ss_pred ceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 277 KKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 277 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
..+++++++.++-..++.+.+.......+ ++...-|++.++|-.-.+
T Consensus 155 ~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 155 IRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred ceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 68999999999999999987754332222 556788888888765554
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=9.9e-08 Score=73.94 Aligned_cols=60 Identities=40% Similarity=0.667 Sum_probs=47.6
Q ss_pred CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEeeccccc
Q 038480 507 PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSETSI 567 (850)
Q Consensus 507 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i 567 (850)
|+|++|++++|.++.+++..|.++++|++|++++| .+..+|. .+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888888888888888888888888 7776654 667888888888888764
No 59
>PTZ00202 tuzin; Provisional
Probab=98.48 E-value=8.1e-06 Score=86.10 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred CCCcccchhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 128 LEPTIVGLESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 128 ~~~~~vgr~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..+.|+||+.+..++...|.+ +..+++.|+|++|+|||||++.+.... . + ..++++.. +..++++.++
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL 330 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVV 330 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHH
Confidence 356899999999999999864 234589999999999999999999765 1 1 12222222 6799999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHh-----c-cCcEEEEEcccCCccccccc---cccCCCCCCCeEEEEecCchhHhh---h
Q 038480 205 ERIGSFGNKSLEEKASDIFKIL-----S-KKKFLLLLDDVWERIDLVKV---GVPFPTSENASKVVFTTRLVDVCS---L 272 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~iivTtR~~~v~~---~ 272 (850)
.+||........++...|.+.+ . +++.+||+-== +-..+..+ ...+.....-|.|++----+.+.. .
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 9999744444455666665554 2 55666665322 21222211 111223334455665433222211 1
Q ss_pred ccCcceEeccCCChhhHHHHHHHHh
Q 038480 273 MGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+.--..|-+.+++.++|...-.+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 1223578899999999998877654
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=1.8e-06 Score=93.62 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=109.1
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-EEEEEEecCCCCH--HHHHH--HHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-VVIWVVVSKDMQL--ERIQE--KIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~--~i~ 204 (850)
..++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+.+.. . ...+. ..+.++++.-.+. ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 4579999999999999987776678899999999999999999876 2 22222 2344444321100 00000 000
Q ss_pred HHhcCC--CCCCHHHHHHHH-HHHh-----ccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCch-hHhhhc
Q 038480 205 ERIGSF--GNKSLEEKASDI-FKIL-----SKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRLV-DVCSLM 273 (850)
Q Consensus 205 ~~l~~~--~~~~~~~~~~~l-~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~ 273 (850)
..++.. ......+....+ .... .+.+-+||+||+.... ....+...+......+++|+||... .+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 000011111111 1111 1345589999996442 2222322222223446677776433 222222
Q ss_pred -cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 274 -GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.....+.+.+++.++...++.+.+....... ..+..+.+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2235788999999999999988775444222 255688899999987665543
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1.1e-06 Score=82.32 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=74.4
Q ss_pred cchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 038480 133 VGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGN 212 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 212 (850)
+|++..++.+...+.....+.+.|+|.+|+||||+++.+++.. . ..-..++++.+++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999999877666789999999999999999999987 2 222456677665543322221111100
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEcccCCc-----cccccccccCCC---CCCCeEEEEecCchh
Q 038480 213 KSLEEKASDIFKILSKKKFLLLLDDVWER-----IDLVKVGVPFPT---SENASKVVFTTRLVD 268 (850)
Q Consensus 213 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~---~~~gs~iivTtR~~~ 268 (850)
............++.++|+||++.. ..+......+.. ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999843 122222222211 135678888887543
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.8e-06 Score=97.03 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=110.8
Q ss_pred CcccchhHHHHHHHHHhccCCceE-EEEEcCCCChHHHHHHHHHHhhccCCCC-------------------CCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGI-IGLYGMGGVGKTTLLTQINNKFIDTPND-------------------FDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 189 (850)
..+||.+..++.+.+++..+++.- +.++|+.|+||||+|+.+++... -... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 357999999999999998776664 57999999999999999998862 1111 11122232
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEe-cCc
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFT-TRL 266 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivT-tR~ 266 (850)
.+....+.. .++|.+.+. .....+++-++|||+++.. ..+..+...+-......++|++ |..
T Consensus 95 Aas~~kVDd-IReLie~v~--------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 95 AASRTKVDD-TRELLDNVQ--------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred cccccCHHH-HHHHHHHHH--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 221111111 122222111 0112467779999999743 3445544333222344555554 444
Q ss_pred hhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 267 VDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 267 ~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..+...+ .....|++.+|+.++....+.+.+...... -..+....|++.++|.|.-+..+
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4443222 223689999999999999998877543321 12456788999999988655444
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.5e-06 Score=88.90 Aligned_cols=176 Identities=13% Similarity=0.162 Sum_probs=114.8
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhc---cCCCCCCEEEEEEe-cCCCCHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFI---DTPNDFDVVIWVVV-SKDMQLERIQEKIGE 205 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~ 205 (850)
.++|.+..++.+.+++..++. ....++|+.|+||||+|+.+++... ....++|...|... +....+++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 478999999999999987654 4668999999999999999998641 12356676666542 22223333 222223
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccC--CccccccccccCCCCCCCeEEEEecCchhHh-hhc-cCcceEec
Q 038480 206 RIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVW--ERIDLVKVGVPFPTSENASKVVFTTRLVDVC-SLM-GAQKKFKI 281 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~~-~~~~~~~l 281 (850)
.+.. .-..+++-++|+|+++ +...+..+...+.....++.+|++|.+.+.. ..+ .....+++
T Consensus 84 ~~~~--------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 84 EVNK--------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKL 149 (313)
T ss_pred HHhc--------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeC
Confidence 2221 0112455577777774 4456777766666656788888888765432 111 22368899
Q ss_pred cCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 282 ECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 282 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.++++++....+.+..... ..+.++.++..++|.|..+..
T Consensus 150 ~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 150 NRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 9999999988887654311 133467889999999876643
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.1e-06 Score=89.50 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCC-------------------CCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPND-------------------FDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 189 (850)
..++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.+.+.. .-... +.-..++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 3579999999999999887654 467899999999999999999876 21100 11112222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCch
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
.+......+ .+++.+.+.. ....+++-++|+|+++... .++.+...+-......++|++|.+.
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~--------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYY--------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred ccccCCHHH-HHHHHHHHhc--------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 111111111 1112111110 0012445699999997543 3455544443334456677666543
Q ss_pred -hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 268 -DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 268 -~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.+...+ +....+++.+++.++..+.+.+.+...+... .++.++.|++.++|.|..+.
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 332222 2236789999999999998888765433111 24567889999999886543
No 65
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=5.6e-08 Score=95.36 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=55.2
Q ss_pred CCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccceeecc--------cccccCCCccEEecc
Q 038480 530 MPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRML 601 (850)
Q Consensus 530 l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~ 601 (850)
.+.|..||||+| .|+.+..++.-++.++.|++|+|.|..+-. +..|++|++||++ ..-.++.|+++|.+.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 445666777777 666666666666677777777776665532 5555555555554 111344555555555
Q ss_pred CCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhh
Q 038480 602 DCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQK 648 (850)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~ 648 (850)
.|.+. .+..|..|-+|..|+++.|.+..+..
T Consensus 361 ~N~iE----------------~LSGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 361 QNKIE----------------TLSGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred hhhHh----------------hhhhhHhhhhheeccccccchhhHHH
Confidence 55421 23344444455555555555544443
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=2.8e-06 Score=86.10 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=100.0
Q ss_pred Ccccchh-HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLE-STLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~-~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.. ..+..+.++......+.+.|+|+.|+|||+|++.+++... .....+.++++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 3445632 2344444444444556899999999999999999999862 2234566776643110
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc---ccccccc-ccCCC-CCCC-eEEEEecCch---------hHhhhc
Q 038480 209 SFGNKSLEEKASDIFKILSKKKFLLLLDDVWER---IDLVKVG-VPFPT-SENA-SKVVFTTRLV---------DVCSLM 273 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~-~~l~~-~~~g-s~iivTtR~~---------~v~~~~ 273 (850)
...+ +.+.+.. --+|++||+... ..|+... ..+.. ...| .++|+||+.. ++.+.+
T Consensus 87 -----~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 -----FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred -----hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 0011 1111211 237899999642 2333221 11111 1123 3688888754 234445
Q ss_pred cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 274 GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
....++++.+++.++-.+++++.+....... .+++..-|++.+.|..-++..
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHH
Confidence 5667899999999999999988664433222 256678888888876655543
No 67
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=6.3e-07 Score=82.21 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccC--CCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDT--PNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGN--KSLEEKASDIFKIL 226 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~l~~~l 226 (850)
.+++.|+|.+|+|||++++.+.+..... ...-..++|+.++...+...+...|+..++.... .+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999876210 0013457799999888999999999999998333 46777888888888
Q ss_pred ccCcE-EEEEcccCCc-c--ccccccccCCCCCCCeEEEEecCc
Q 038480 227 SKKKF-LLLLDDVWER-I--DLVKVGVPFPTSENASKVVFTTRL 266 (850)
Q Consensus 227 ~~k~~-LlVlDdv~~~-~--~~~~~~~~l~~~~~gs~iivTtR~ 266 (850)
...+. +||+|+++.. . .++.+.... + ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 76655 9999999654 2 223332222 2 566777776653
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=3.1e-07 Score=101.91 Aligned_cols=102 Identities=30% Similarity=0.432 Sum_probs=73.0
Q ss_pred cccceEEEeecccccccccCCCCCC--ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeE
Q 038480 483 KWRDRRRISLLRNKIVALSETPTCP--HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYL 560 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L 560 (850)
..+.+..|++.+|.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.++.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 3456777888888887776655543 788888888877766533 677888888888888 777777766677888888
Q ss_pred eecccccccccchhhcCCccceeecc
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
++++|++..+|..+..+..|+.|.+.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhc
Confidence 88888888887766555555555443
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-08 Score=99.52 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=78.7
Q ss_pred ccceEEEeeecCCCCccccc-cccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCC---CCcc-
Q 038480 657 SSTKSLQLRECKDSKSLNIS-YLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLK---EVTW- 731 (850)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~---~l~~- 731 (850)
.+|+.|++++|.+.+...++ -+.+++.|..|++++|....+. +... ... --++|+.|+|+||...- ++..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~--Vtv~-V~h--ise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK--VTVA-VAH--ISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh--hhHH-Hhh--hchhhhhhhhhhhHhhhhhhHHHHH
Confidence 46677777777666554432 2456777777888877443322 1100 111 23577777787775321 1222
Q ss_pred cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccc-ccCCCCCCCccEEeeccCC
Q 038480 732 LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKI-YWNALSFPDLLELFVSECP 803 (850)
Q Consensus 732 l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~~~L~~L~i~~C~ 803 (850)
...+|+|.+|+|++|..++.-.. ..+..|+.|++|.++.|..+.-- -...+..|+|.+|++.+|-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 23578888888888776655322 24567788888888877643211 1234567888888877763
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.38 E-value=9.2e-06 Score=87.33 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=105.5
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++|+++.++.+..++.....+.+.++|..|+||||+|+.+++... ...+. ..+-+..+.......+...+ ..+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~~ 94 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKI-KEFAR 94 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHH-HHHHh
Confidence 4789999999999999877667789999999999999999998862 22221 11222222222222111111 11110
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCch-hHhhhc-cCcceEeccCCC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRLV-DVCSLM-GAQKKFKIECLR 285 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~ 285 (850)
.. ......+-++++|+++... ....+...+......+++|+++... .+.... .....+.+.+++
T Consensus 95 ~~------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 95 TA------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred cC------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 00 0001335689999986432 2233332232223345677666432 221111 123468999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 286 DKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 286 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.++....+...+....... .++....+++.++|.+.-+.
T Consensus 163 ~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 163 KEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 9999999988875444222 24568889999999876643
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=6.4e-06 Score=87.90 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=106.4
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++|.+..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..+...+.. ..+++++.+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHHh
Confidence 4789998888888888777667788999999999999999998861 22232 22222233322222 22222221111
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCc-hhHhhhcc-CcceEeccCCC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRL-VDVCSLMG-AQKKFKIECLR 285 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~~~~~l~~L~ 285 (850)
... ..-.++.-++++|+++... ....+...+-.....+++|+++.. ..+...+. ....+++.+++
T Consensus 91 ~~~-----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 91 KKV-----------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred ccc-----------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 000 0002456799999997532 222332222222344667766643 22222111 23578999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 286 DKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 286 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.++....+...+...+...+ ++....|++.++|....+.
T Consensus 160 ~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999888765442222 4567889999998664443
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.2e-06 Score=91.00 Aligned_cols=190 Identities=16% Similarity=0.109 Sum_probs=108.4
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++|.+..++.+..++..+... .+.++|+.|+||||+|+.+++.. .-.+.+....|.|.+.. .+......-+..+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCL-AVRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhH-HHhcCCCCceEEecc
Confidence 5799999999999998876654 56899999999999999998876 21122221222221100 000000000000000
Q ss_pred CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecC-chhHhhhcc-CcceEe
Q 038480 210 FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTR-LVDVCSLMG-AQKKFK 280 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~~~-~~~~~~ 280 (850)
......+. .+.+.+.+ .+++-++|+|+++.. ..+..+...+......+.+|++|. ...+...+. ....++
T Consensus 93 ~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~ 171 (504)
T PRK14963 93 ASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFR 171 (504)
T ss_pred cccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEE
Confidence 00111111 11122222 346679999999743 335555444433334455555554 333322222 246899
Q ss_pred ccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 281 IECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 281 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+.+++.++....+.+.+...+... .++....|++.++|.+--+
T Consensus 172 f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 172 FRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999999999998875544222 2456788999999988655
No 73
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=8.7e-07 Score=89.53 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHhcC--CCCCCHH------HH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD--MQLERIQEKIGERIGS--FGNKSLE------EK 218 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~--~~~~~~~------~~ 218 (850)
..-..++|+|++|+|||||++.+++.. . ..+|+.++|+.+.+. +++.++++.+...+-. .+..... ..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 345689999999999999999999987 3 348999999998776 7899999998333222 1111111 11
Q ss_pred HHHHHHH-hccCcEEEEEcccCC
Q 038480 219 ASDIFKI-LSKKKFLLLLDDVWE 240 (850)
Q Consensus 219 ~~~l~~~-l~~k~~LlVlDdv~~ 240 (850)
.+....+ -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 1122222 247999999999953
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7.6e-06 Score=91.49 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=109.4
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC---C--------------------CCCEEE
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP---N--------------------DFDVVI 186 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~---~--------------------~f~~~~ 186 (850)
.+||.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...-.. . .|.-++
T Consensus 17 dVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi 96 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI 96 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce
Confidence 5799999999999999877654 568999999999999999988762100 0 011122
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----hccCcEEEEEcccCCc--cccccccccCCCCCCCeEE
Q 038480 187 WVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKI----LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKV 260 (850)
Q Consensus 187 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~i 260 (850)
++..+.. ...++..+.+... ..++.-++|+|+++.. ..++.+...+-.-...+++
T Consensus 97 EIdAas~-------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 97 EMDAASN-------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred Eeccccc-------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 2222211 1222222222211 2356679999999743 3455554444322334555
Q ss_pred E-EecCchhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 261 V-FTTRLVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 261 i-vTtR~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
| +||....+...+. -...+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|..+..+
T Consensus 158 ILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 158 ILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 5 4555555543322 236799999999999999988775443221 1345688999999998755443
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.34 E-value=7.2e-06 Score=79.36 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=92.0
Q ss_pred CcccchhHHHHHHHHHhc-----cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFE-----EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..|||.+.-++.+.-++. ++...-+.+||++|+||||||..+++.. ...|. +++.+.-..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k--------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEK--------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--S---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhh---------
Confidence 468999988877654443 2356778999999999999999999987 34442 233211101
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cc-------ccccccc-CCCCCC-----------CeEEEEe
Q 038480 205 ERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--ID-------LVKVGVP-FPTSEN-----------ASKVVFT 263 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~~~~~-l~~~~~-----------gs~iivT 263 (850)
..+++..+.+ + +++-+|++|++..- .. .++.... .-..+. =+-|=-|
T Consensus 89 ----------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 89 ----------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp ----------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred ----------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1112221211 2 23557788998642 11 1111000 001111 1223358
Q ss_pred cCchhHhhhccCc--ceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhh
Q 038480 264 TRLVDVCSLMGAQ--KKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAM 333 (850)
Q Consensus 264 tR~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 333 (850)
||..-+...+... -..+++..+.+|-..+..+.+..-.... .++.+.+|++.|.|.|--+.-+-+..
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8865554333332 2458999999999999998875544222 25679999999999997665544443
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6.3e-06 Score=89.86 Aligned_cols=191 Identities=12% Similarity=0.073 Sum_probs=109.2
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.+..+..+..++..++++ .+.++|+.|+||||+|+.+++.. . +..... ...+....+...+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-n-ce~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-N-CENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-C-cccccC--ccccCCCcHHHHHHccCCccce
Confidence 35799999999999999887654 57899999999999999999876 2 111100 0011111111111111100000
Q ss_pred C---CCCCCHHH---HHHHHHH-HhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCchhHhhhcc-Ccc
Q 038480 209 S---FGNKSLEE---KASDIFK-ILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRLVDVCSLMG-AQK 277 (850)
Q Consensus 209 ~---~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~~-~~~ 277 (850)
. ......++ +.+.+.. ...++.-++|+|+++.. ..+..+...+-.......+|. ||....+...+. -..
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 0 00111111 1122211 12356679999999743 445555444432223444444 555444433322 235
Q ss_pred eEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 278 KFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.|.+.+++.++..+.+.+.+...+... .++....|++.++|.+.-+.
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHHH
Confidence 799999999999999988875543222 24567889999999875443
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=3.6e-07 Score=101.34 Aligned_cols=195 Identities=24% Similarity=0.317 Sum_probs=103.0
Q ss_pred Eeeccccc-ccccCCCCCCccceeecccccCCCCchhhhcCCC-cceEEEccCCCCCcccChhhccccCCCeEeeccccc
Q 038480 490 ISLLRNKI-VALSETPTCPHLVTLFLAINKLDTITSNFFDFMP-SLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSI 567 (850)
Q Consensus 490 L~l~~n~~-~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i 567 (850)
+....+.+ .........+.+..|.+.+|.++.+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333334456677777777776666653 33342 6777777777 7777766677777777777777777
Q ss_pred ccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhh
Q 038480 568 KELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQ 647 (850)
Q Consensus 568 ~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~ 647 (850)
..+|...+.++ +|+.|++.+|.+... ......+..|+.+.++.|......
T Consensus 176 ~~l~~~~~~~~---------------~L~~L~ls~N~i~~l---------------~~~~~~~~~L~~l~~~~N~~~~~~ 225 (394)
T COG4886 176 SDLPKLLSNLS---------------NLNNLDLSGNKISDL---------------PPEIELLSALEELDLSNNSIIELL 225 (394)
T ss_pred hhhhhhhhhhh---------------hhhheeccCCccccC---------------chhhhhhhhhhhhhhcCCcceecc
Confidence 77766554444 445555555553321 111123334555555544211111
Q ss_pred hhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCC
Q 038480 648 KLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLK 727 (850)
Q Consensus 648 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 727 (850)
.......++..+.+.++. ...++ ..+..+++|+.|++++| .+.++ ...+.+.+|+.|+++++....
T Consensus 226 ---~~~~~~~~l~~l~l~~n~-~~~~~-~~~~~l~~l~~L~~s~n-~i~~i--------~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 226 ---SSLSNLKNLSGLELSNNK-LEDLP-ESIGNLSNLETLDLSNN-QISSI--------SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ---hhhhhcccccccccCCce-eeecc-chhccccccceeccccc-ccccc--------ccccccCccCEEeccCccccc
Confidence 111112233444433333 11111 34566667777777777 34433 113356778888887775444
Q ss_pred CCc
Q 038480 728 EVT 730 (850)
Q Consensus 728 ~l~ 730 (850)
.++
T Consensus 292 ~~~ 294 (394)
T COG4886 292 ALP 294 (394)
T ss_pred cch
Confidence 433
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.5e-05 Score=89.47 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=109.2
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCC------------------CCCCEEEEEEec
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTP------------------NDFDVVIWVVVS 191 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~s 191 (850)
.++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++...... ..|.-++++...
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 579999999999999987654 4577999999999999999988651100 112223333332
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEE-EecCch
Q 038480 192 KDMQLERIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVV-FTTRLV 267 (850)
Q Consensus 192 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ii-vTtR~~ 267 (850)
....+.++ +++++ .+.. -..+++-++|+|+++.. ..++.+...+-.....+.+| +||...
T Consensus 97 s~~gvd~i-r~ii~---------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 97 SRTGVEET-KEILD---------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred cccCHHHH-HHHHH---------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 22222211 12221 1111 12456779999999743 33444444443333445555 455444
Q ss_pred hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHh
Q 038480 268 DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIGR 331 (850)
Q Consensus 268 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 331 (850)
.+...+ .....+++.+++.++....+.+.+...+.. -.++....|++.++|.+. |+..+-.
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 443222 234689999999999988888766443322 124556889999999664 4444443
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.1e-05 Score=87.68 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=109.1
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCE-EEEEEecCCCCHHHHHHHHHHH--
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDV-VIWVVVSKDMQLERIQEKIGER-- 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~-- 206 (850)
.++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+++... -...... --+..+....+ -..+...
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C~~----C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQCTN----CISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCChH----HHHHhcCCC
Confidence 479999999988888776654 5788999999999999999998762 1111000 00000110000 0000000
Q ss_pred -----hcCCCCCCHHHHHHHHHH----HhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCchhHhhhcc
Q 038480 207 -----IGSFGNKSLEEKASDIFK----ILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRLVDVCSLMG 274 (850)
Q Consensus 207 -----l~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~~ 274 (850)
+........+++...+.. -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+...+.
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 000011122222222211 12356779999999853 346666544444344566554 555555543332
Q ss_pred -CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 275 -AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 275 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
....+.+.+++.++....+.+.+....... ..+....|++.++|.+.-+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 235789999999999999998886544222 2455678999999977554
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=3.4e-05 Score=89.94 Aligned_cols=170 Identities=22% Similarity=0.249 Sum_probs=98.9
Q ss_pred cccchhHHHH---HHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGLESTLD---KVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr~~~~~---~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .+..+. ....+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 4789887764 46666666777788999999999999999999876 33441 111110 01111
Q ss_pred cCCCCCCHHHHHHHHHHHh--ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE--ecCchh--Hhhh-ccCcce
Q 038480 208 GSFGNKSLEEKASDIFKIL--SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF--TTRLVD--VCSL-MGAQKK 278 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv--TtR~~~--v~~~-~~~~~~ 278 (850)
..+......+.+ .+++.+|||||++.. ...+.+...+ ..|+.++| ||++.. +... ......
T Consensus 93 -------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v 162 (725)
T PRK13341 93 -------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRL 162 (725)
T ss_pred -------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccc
Confidence 111112222222 246779999999643 3344443222 33555555 344432 2111 122357
Q ss_pred EeccCCChhhHHHHHHHHhCCCC----CCCCCChHHHHHHHHHHcCCCchHH
Q 038480 279 FKIECLRDKEAWELFLEKVGEEP----LVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 279 ~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+.+.+|+.++...++.+.+.... ...-.-.++....|++.+.|..-.+
T Consensus 163 ~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999999988764110 0011112456788899998865433
No 81
>PRK09087 hypothetical protein; Validated
Probab=98.27 E-value=8.7e-06 Score=81.63 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
..+.+.|+|..|+|||+|++.+++.. . ..+++.. .+..++.. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-------------------~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-------------------AAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-------------------hhhc-
Confidence 34679999999999999999998764 1 1133221 11111111 1111
Q ss_pred cEEEEEcccCCcc-ccccccccCC-CCCCCeEEEEecCc---------hhHhhhccCcceEeccCCChhhHHHHHHHHhC
Q 038480 230 KFLLLLDDVWERI-DLVKVGVPFP-TSENASKVVFTTRL---------VDVCSLMGAQKKFKIECLRDKEAWELFLEKVG 298 (850)
Q Consensus 230 ~~LlVlDdv~~~~-~~~~~~~~l~-~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (850)
-+|++||+.... +-..+...+. ....|..||+|++. ++..+.+.....+++++++.++-..++++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889996421 1111211111 01235678888863 33344555668899999999999999999885
Q ss_pred CCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 299 EEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 299 ~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
......+ +++..-|++.+.|..-++..
T Consensus 168 ~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 5432222 56688888888887766653
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2e-05 Score=87.51 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 189 (850)
..++|.+..+..+...+..+.. +.+.++|++|+||||+|+.+++.. .... .+..++.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 3579999888888888877766 457899999999999999998875 1110 011122333
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL- 266 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~- 266 (850)
.+.......+ ++|.+.... ....+++-++|+|+++.. .....+...+........+|++|.+
T Consensus 93 aa~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 3222222222 122211110 012345679999999643 2334443333332234444444433
Q ss_pred hhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC-CchHHHHHHhhh
Q 038480 267 VDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG-LPLALITIGRAM 333 (850)
Q Consensus 267 ~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~l 333 (850)
..+...+ .....+.+.+++.++....+.+.+....... .++....|++.++| .+.|+..+-.+.
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3343222 2336789999999999999988875433222 24567888888765 566766665543
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.6e-05 Score=90.54 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH--
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER-- 206 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 206 (850)
..+||.+..++.+.+.+..+++. .+.++|..|+||||+|+.+++... -...+. ...+.....-+.|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 35799999999999999876654 467999999999999999988762 110000 0000000111111100
Q ss_pred -----hcCCCCCCHHHHHHHHHHH-----hccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCchhHhhhc
Q 038480 207 -----IGSFGNKSLEEKASDIFKI-----LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRLVDVCSLM 273 (850)
Q Consensus 207 -----l~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~ 273 (850)
+........++.. .+.+. ..+++-++|+|+++.. .....+...+-......++|+ ||....+...+
T Consensus 88 ~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0000001122211 11111 2466779999999743 334444333322233455555 44444443222
Q ss_pred -cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 274 -GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
.-...|++.+++.++....+.+.+...... ...+....|++.++|.+..+..+.
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 224689999999999999998876433311 124456789999999887554443
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.3e-05 Score=87.91 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=105.9
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-------------------EEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-------------------VVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-------------------~~~wv~ 189 (850)
..++|++..++.+.+++..++. +.+.++|+.|+||||+|+.+++... -....+ -++++.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 3579999999999999977544 4688999999999999999988762 111100 112222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCc
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRL 266 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~ 266 (850)
.+....+.++ +++...+.. .-..+++-++|+|+++.. ..+..+...+-.....+.+|+ |+..
T Consensus 95 aas~igVd~I-ReIi~~~~~--------------~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 95 AASNNGVDEI-RNIIDNINY--------------LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred cccccCHHHH-HHHHHHHHh--------------chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 2111111111 111111110 001234457999999643 344444443332233455554 4444
Q ss_pred hhHhhh-ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHh
Q 038480 267 VDVCSL-MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIGR 331 (850)
Q Consensus 267 ~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 331 (850)
..+... ......+++.+++.++....+...+...+...+ .+.+..+++.++|.+. |+..+-.
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444322 223457899999999999988887754332222 4557889999999665 4444433
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.5e-05 Score=88.82 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=107.5
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCC--CEEEEEEecCCCCHHHHHHHHHHH-
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDF--DVVIWVVVSKDMQLERIQEKIGER- 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~- 206 (850)
.+||-+..++.+.+++..++. ..+.++|..|+||||+|+.+.+... -.... ...-. ..++....-+.|...
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 579999999999999987765 4668999999999999999977651 10000 00000 000001111111000
Q ss_pred ------hcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-CchhHhhh
Q 038480 207 ------IGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLVDVCSL 272 (850)
Q Consensus 207 ------l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~ 272 (850)
+........++..+.+ +.. .++.-++|+|+++.. ..+..+...+-.....+++|++| ....+...
T Consensus 92 h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000011122222211 111 244558999999743 34555544443333455566544 44444322
Q ss_pred c-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 273 M-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 273 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 23468999999999999999888755442222 455788999999977555443
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.21 E-value=5.3e-05 Score=74.86 Aligned_cols=173 Identities=17% Similarity=0.161 Sum_probs=99.5
Q ss_pred CcccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..|+|.++.++++-=.+.. ....-|.++|++|.||||||.-+++.. . ..+.. .+.+-+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~k~------tsGp~l-------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNLKI------TSGPAL-------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCeEe------cccccc--------
Confidence 3589999988888666643 456689999999999999999999987 2 22211 111100
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc---------cccccccc-CCCCCCCeEE-----------EEe
Q 038480 205 ERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI---------DLVKVGVP-FPTSENASKV-----------VFT 263 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~-l~~~~~gs~i-----------ivT 263 (850)
....+++..+- .|+.. =++++|.+.... ..+++... .-..++++|. =-|
T Consensus 89 --------eK~gDlaaiLt-~Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 89 --------EKPGDLAAILT-NLEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred --------cChhhHHHHHh-cCCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 01111111111 12222 245667775321 01111000 0011222322 248
Q ss_pred cCchhHhhhccC--cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhh
Q 038480 264 TRLVDVCSLMGA--QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRA 332 (850)
Q Consensus 264 tR~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 332 (850)
||.--+..-+.. .-+.+++..+.+|-.++..+.+..-....+ ++-+.+|++...|-|.-+.-+-+.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHH
Confidence 885444332222 246789999999999999998865443333 455899999999999765544443
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=1.5e-05 Score=80.72 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=94.6
Q ss_pred cchhHHH-HHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC
Q 038480 133 VGLESTL-DKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF 210 (850)
Q Consensus 133 vgr~~~~-~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 210 (850)
.|..... ..+.++... ...+.+.|+|..|+|||+||+.+++... ... ..+.+++...... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~~------~----~--- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPLL------A----F--- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhHH------H----H---
Confidence 4554433 333333332 3456789999999999999999998752 122 2344554433110 0 0
Q ss_pred CCCCHHHHHHHHHHHhccCcEEEEEcccCCcccc--ccccccCCC-CCCCe-EEEEecCchhHhh--------hccCcce
Q 038480 211 GNKSLEEKASDIFKILSKKKFLLLLDDVWERIDL--VKVGVPFPT-SENAS-KVVFTTRLVDVCS--------LMGAQKK 278 (850)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--~~~~~~l~~-~~~gs-~iivTtR~~~v~~--------~~~~~~~ 278 (850)
... ...-+||+||+.....+ ..+...+.. ...+. .||+|++...... .+.....
T Consensus 86 -------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 86 -------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151 (227)
T ss_pred -------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeE
Confidence 111 23347899999643221 122222211 11233 4666766433221 2223468
Q ss_pred EeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhh
Q 038480 279 FKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAM 333 (850)
Q Consensus 279 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 333 (850)
+++.++++++-..++.+.+....... -++..+.+++.+.|.+..+..+...+
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 89999999887777776553322222 24567888888999988877665544
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.1e-05 Score=81.56 Aligned_cols=188 Identities=12% Similarity=0.137 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC-CCCC------EEEEEEecCCCCHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP-NDFD------VVIWVVVSKDMQLERIQE 201 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~------~~~wv~~s~~~~~~~~~~ 201 (850)
..++|.+..++.+.+.+..++.+ .+.++|+.|+||+|+|..+.+...-.. ...+ ...-++ .. ...-+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~---c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PD---HPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CC---ChHHH
Confidence 45899999999999999887655 588999999999999998888762110 0000 000000 00 00111
Q ss_pred HHHHHhcC----------------CCCCCHHHHHHHHHHHhc-----cCcEEEEEcccCCc--cccccccccCCCCCCCe
Q 038480 202 KIGERIGS----------------FGNKSLEEKASDIFKILS-----KKKFLLLLDDVWER--IDLVKVGVPFPTSENAS 258 (850)
Q Consensus 202 ~i~~~l~~----------------~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs 258 (850)
.|...-.. ......++ ++.+.+++. +++.++|+||++.. .....+...+-....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 11100000 01112333 333444432 56779999999643 33344433333333455
Q ss_pred EEEEecCchh-Hhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 259 KVVFTTRLVD-VCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 259 ~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
.+|++|.+.+ +.... .....+.+.+++.++...++.+...... .+....+++.++|.|+.+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 5666665543 32222 2346899999999999999987642211 1223678999999998775543
No 89
>PF14516 AAA_35: AAA-like domain
Probab=98.20 E-value=0.00028 Score=75.41 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=119.1
Q ss_pred CCcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-----CCHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-----MQLERIQEKI 203 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 203 (850)
.+..|.|...-+++.+.+.+. -..+.|.|+-.+|||||...+.+.. +. ..+ .++++++... .+....++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 345688987777788887763 3689999999999999999999887 22 233 4567876652 2456566555
Q ss_pred HHHhcC----CC---------CCCHHHHHHHHHHHh---ccCcEEEEEcccCCcccc----ccccccC----CC---C--
Q 038480 204 GERIGS----FG---------NKSLEEKASDIFKIL---SKKKFLLLLDDVWERIDL----VKVGVPF----PT---S-- 254 (850)
Q Consensus 204 ~~~l~~----~~---------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~~~~~l----~~---~-- 254 (850)
+..+.. .. ..........+.+.+ .+++.+|++|+|+..... .++...+ .. .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 544433 11 011112223344432 268999999999743221 1111100 00 0
Q ss_pred CCCeEEE-Ee-cCchhHh----hhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 255 ENASKVV-FT-TRLVDVC----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 255 ~~gs~ii-vT-tR~~~v~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
-..-+++ +. |+..... +-+.....++|.+++.+|...|..++-..-. ....++|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHH
Confidence 0111222 22 2211111 1122345789999999999999987632211 23389999999999999999
Q ss_pred HHhhhcCC
Q 038480 329 IGRAMGSK 336 (850)
Q Consensus 329 ~~~~l~~~ 336 (850)
++..+..+
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99988653
No 90
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=4.3e-07 Score=91.68 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=64.3
Q ss_pred hcCCCcceEEEccCCCCCc-ccCh----hhccccCCCeEeecccccccccc-hhhcCCccceeecccccccCCCccEEec
Q 038480 527 FDFMPSLRVLNLSKNLSLK-QLPS----EISKLVSLQYLNLSETSIKELPN-ELKALTNLKCWNLEQLISSFSDLRVLRM 600 (850)
Q Consensus 527 ~~~l~~L~~L~Ls~~~~i~-~lp~----~i~~l~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~~~i~~l~~L~~L~l 600 (850)
+.++++|++||||+| -++ ..+. -+.++..|+.|.|.+|.+....- .++. -|..|.....+++-++|+++..
T Consensus 88 L~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHHHhccCCCcceEEEEe
Confidence 334555666666655 332 2221 23345555555555554432110 0110 1111221133455556666666
Q ss_pred cCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh--hhhhhcCCCccccceEEEeeecCCCCcccc---
Q 038480 601 LDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA--LQKLWSSPKLQSSTKSLQLRECKDSKSLNI--- 675 (850)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~--l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--- 675 (850)
..|.+...+ -......++..+.|+.+.+..|++.. +..+......+++|+.|+|.+|........
T Consensus 165 ~rNrlen~g----------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 165 GRNRLENGG----------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ecccccccc----------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 665533210 11223344555666666666554421 112222233345555555555432111100
Q ss_pred ccccCcCCcCeeeeccC
Q 038480 676 SYLADLKHLDKLDFAYC 692 (850)
Q Consensus 676 ~~l~~~~~L~~L~l~~~ 692 (850)
..++.+++|+.|++++|
T Consensus 235 kaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhcccchheeeccccc
Confidence 12334455555555555
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.20 E-value=1.3e-05 Score=87.25 Aligned_cols=170 Identities=20% Similarity=0.245 Sum_probs=99.1
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
..+.|+++.++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3578999999999887631 124458899999999999999999986 3333 22211
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc----------------ccccccccCC--CCCCC
Q 038480 197 ERIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI----------------DLVKVGVPFP--TSENA 257 (850)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~~~~g 257 (850)
..+.... ++ ........+.+.. ...+.+|++||++... .+..+...+. ....+
T Consensus 190 ~~l~~~~---~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKY---IG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHh---hh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1111111 11 0111122222222 3467899999997431 0111111111 11346
Q ss_pred eEEEEecCchhHh-----hhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 258 SKVVFTTRLVDVC-----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 258 s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.+||.||...+.. ........+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 6788888754332 1112346789999999999999998875543222222 466777787754
No 92
>PRK05642 DNA replication initiation factor; Validated
Probab=98.20 E-value=1.5e-05 Score=80.59 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=89.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF 231 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 231 (850)
..+.|+|..|+|||.|++.+++.. . ..-..++|++..+ +... ...+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~------~~~~----------------~~~~~~~~~~~d- 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAE------LLDR----------------GPELLDNLEQYE- 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHH------HHhh----------------hHHHHHhhhhCC-
Confidence 578999999999999999999876 2 1224567776432 1111 012233333333
Q ss_pred EEEEcccCCc---ccccc-ccccCCC-CCCCeEEEEecCchhH---------hhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 232 LLLLDDVWER---IDLVK-VGVPFPT-SENASKVVFTTRLVDV---------CSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 232 LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+||+||+... ..|.. +...+.. ...|..||+|++...- .+.+.....+++++++.++-..+++.++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6789999632 23432 2221211 1245678888764332 2223344678999999999999998665
Q ss_pred CCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 298 GEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 298 ~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.......+ +++..-|++.+.|..-++..
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 43322222 56678888888876655543
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=87.67 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=108.1
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEEe
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVVV 190 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~ 190 (850)
.+||-+..++.+.+++..+.++ .+.++|+.|+||||+|+.+.+... -.. .|.-++.+..
T Consensus 17 divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 5799999999999999876655 568999999999999999988761 111 1212333333
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecC-ch
Q 038480 191 SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTR-LV 267 (850)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR-~~ 267 (850)
+....++++ +++++.+.. .-..++.-++|+|+++.. .....+...+-.....+++|++|. ..
T Consensus 96 as~~~v~~i-R~l~~~~~~--------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY--------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred cccCCHHHH-HHHHHHHhh--------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 322223222 222222211 011356668999999743 334444433333334566665544 33
Q ss_pred hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 268 DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 268 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.+...+ .....+++.+++.++....+.+.+...+... ..+....|++.++|.+.-+..
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 333222 2235789999999998888777765443222 234567899999998865543
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.7e-05 Score=88.37 Aligned_cols=181 Identities=14% Similarity=0.187 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 189 (850)
..++|.+..+..|.+++..+++. .+.++|..|+||||+|+.+.+... -.. .|--++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 35799999999999999876644 678999999999999999988641 110 011112222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCc-
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRL- 266 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~- 266 (850)
.+....+.. .+++++... ..-..+++-++|+|+++... ....+...+-.....+++|++|.+
T Consensus 95 aAs~~gVd~-IRelle~a~--------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 95 AASNTGIDN-IREVLENAQ--------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred ccccCCHHH-HHHHHHHHH--------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 222212211 111111110 00123566799999997532 233333333222234566666543
Q ss_pred hhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 267 VDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 267 ~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..+...+ +....+++.+++.++....+.+.+....... ..+....|++.++|.+.-+..+
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 3332221 2235688999999999999988876544222 2456789999999988555433
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.18 E-value=2.2e-06 Score=83.94 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHHHhc---cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 132 IVGLESTLDKVWRCFE---EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|+||+++++++...+. ....+.+.|+|.+|+|||+|++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2456899999999999999999999987
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.9e-05 Score=84.07 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=110.4
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccC------------------CCCCCEEEEEEe
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDT------------------PNDFDVVIWVVV 190 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~~ 190 (850)
..+||.+..++.+.+.+..+++. .+.++|+.|+||||+|+.+++...-. ...+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 35799999999998888877665 78899999999999999998743100 011122344444
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-Cch
Q 038480 191 SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLV 267 (850)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~ 267 (850)
+....+.++ +++++.... .-+.++.-++|+|+++.. .....+...+-.....+++|++| ...
T Consensus 93 as~~~vddI-R~Iie~~~~--------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY--------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh--------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 333333322 222222110 001345668999999643 33444444443333456666555 444
Q ss_pred hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 268 DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 268 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
.+...+ .....+.+.+++.++....+.+.+.......+ ++....|++.++|.+..+
T Consensus 158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 443322 23467899999999999999988765542222 455788999999977544
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.16 E-value=6.2e-05 Score=82.21 Aligned_cols=182 Identities=12% Similarity=0.137 Sum_probs=108.8
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccC-C------------------CCCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDT-P------------------NDFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 189 (850)
..++|.+..++.+.+++..++.+ .+.++|+.|+||||+|+.+.+..... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 35799999999999999876544 67899999999999999998775210 0 12332 3332
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCch
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
......... .+++...+.. .-..+++-++|+|+++.. .....+...+......+.+|++|.+.
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~--------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKY--------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred ccccCCHHH-HHHHHHHHhc--------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 221111111 1222222111 001245568999998643 33444443443333456666666544
Q ss_pred h-Hhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 268 D-VCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 268 ~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
. +...+ .....+++.++++++....+...+...+...+ ++.+..+++.++|.|..+....
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 3 22222 22357889999999999998887754332222 4667889999999987664443
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=6.6e-05 Score=81.42 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=102.1
Q ss_pred CcccchhHHHHHHHHHhccCC----------ceEEEEEcCCCChHHHHHHHHHHhhccC------------------CCC
Q 038480 130 PTIVGLESTLDKVWRCFEEVQ----------VGIIGLYGMGGVGKTTLLTQINNKFIDT------------------PND 181 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~----------~~vi~I~G~gGvGKTtLa~~v~~~~~~~------------------~~~ 181 (850)
..++|.+..++.+.+++..+. ...+.++|+.|+||||+|+.+.....-. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357899999999999997653 4568899999999999999998764110 011
Q ss_pred CCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCC
Q 038480 182 FDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTS 254 (850)
Q Consensus 182 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~ 254 (850)
.| +.++..... ....+++. .+.+.+ .+++-++|+|+++.. .....+...+-..
T Consensus 85 pD-~~~i~~~~~------------------~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PD-VRVVAPEGL------------------SIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CC-EEEeccccc------------------cCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 12 112211100 11122211 222222 245568899999743 2233333333222
Q ss_pred CCCeEEEEecCc-hhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 255 ENASKVVFTTRL-VDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 255 ~~gs~iivTtR~-~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..++.+|++|.+ ..+...+. -...+.+.+++.++....+.+..+ . ..+.+..+++.++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 344555555544 44433322 236899999999999988875332 1 1345788999999999766443
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00011 Score=82.96 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=109.4
Q ss_pred cccchhHHHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-------------------EEEEEEe
Q 038480 131 TIVGLESTLDKVWRCFEEVQ-VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-------------------VVIWVVV 190 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-------------------~~~wv~~ 190 (850)
.++|.+..++.+.+.+..++ ...+.++|+.|+||||+|+.+.+... -....+ -++++..
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 57899988888999888765 46777899999999999999988762 111000 0222322
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-h
Q 038480 191 SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-V 267 (850)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~ 267 (850)
+....+.++ +.+.+.+.. .-..+++-++|+|+++.. .....+...+-.......+|++|.+ .
T Consensus 96 a~~~~Id~i-R~L~~~~~~--------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 96 ASNRGIDDA-KRLKEAIGY--------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred ccccCHHHH-HHHHHHHHh--------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 111111111 111111110 012356679999999643 3344444433222234555555543 4
Q ss_pred hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc-hHHHHHHhhh
Q 038480 268 DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP-LALITIGRAM 333 (850)
Q Consensus 268 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~l 333 (850)
.+...+ .....+++.+++.++....+...+....... ..+.++.|++.++|.+ .|+..+..++
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 443222 2235789999999999999988775443222 2456788999999965 6777766554
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.6e-07 Score=92.35 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCCCccEEecccCCCCCCC--cccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 711 GFDSLQRVTIDCCKKLKEV--TWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
.+|+|..|+|++|..++.- ..+..++.|++|.++.|+.+. +. .+-.++..|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~----~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PE----TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hH----HeeeeccCcceEEEEecccc
Confidence 4677888888877655441 125577888888888887542 11 11256777888888888764
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.15 E-value=6.8e-06 Score=86.42 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=65.4
Q ss_pred HHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhcC--CCCCCH
Q 038480 141 KVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGS--FGNKSL 215 (850)
Q Consensus 141 ~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~--~~~~~~ 215 (850)
++++.+.. +.-....|+|++|+||||||+.+++.. .. .+|+.++||.+.+.. ++.++++.+...+-. .+....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 34444443 345678899999999999999999997 33 389999999999887 788888888632221 111111
Q ss_pred HHHH-----HHHHHH--hccCcEEEEEcccC
Q 038480 216 EEKA-----SDIFKI--LSKKKFLLLLDDVW 239 (850)
Q Consensus 216 ~~~~-----~~l~~~--l~~k~~LlVlDdv~ 239 (850)
.... -...+. -.+++++|++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1111 111112 25799999999995
No 102
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=3.2e-06 Score=88.23 Aligned_cols=288 Identities=18% Similarity=0.213 Sum_probs=176.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSK 228 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 228 (850)
..+-+.++|.|||||||++-++.+ . ...| +.+.++....-.+...+.-.+...++. ...+.+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl-~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGL-HVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccc-ccccchHHHHHHHHHHhh
Confidence 357899999999999999999988 4 3445 566677777777777777777766765 222333445567777889
Q ss_pred CcEEEEEcccCCcccc-ccccccCCCCCCCeEEEEecCchhHhhhccCcceEeccCCChh-hHHHHHHHHhCCCC--CCC
Q 038480 229 KKFLLLLDDVWERIDL-VKVGVPFPTSENASKVVFTTRLVDVCSLMGAQKKFKIECLRDK-EAWELFLEKVGEEP--LVS 304 (850)
Q Consensus 229 k~~LlVlDdv~~~~~~-~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~--~~~ 304 (850)
+|.++|+||..+..+- ......+..+...-.|+.|+|.... ........+.+|+.. ++.++|...+.... ...
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 9999999999654221 1111122223334467888885332 334566778888875 78899877664322 122
Q ss_pred CCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHH----HHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHH
Q 038480 305 HPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEE----WRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLR 380 (850)
Q Consensus 305 ~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~----w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 380 (850)
.......+.+|.+...|.|++|..++...++- ...+ ...-+..+.........-.......+.+||.-|.. -.+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHH
Confidence 33446678999999999999999998887763 2222 22222222222111111123567889999999987 688
Q ss_pred HHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHHHHHHhhhcccc---CcceEEEhhhHHHHHHH
Q 038480 381 SCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV---GTNFVKMHDVIRDMSLW 455 (850)
Q Consensus 381 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~ 455 (850)
--|.-++.|...|.... ..|.+.|-... ........-+..+++.++.... ....|+.-+-+|.++.-
T Consensus 243 ~~~~rLa~~~g~f~~~l----~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 243 ALFGRLAVFVGGFDLGL----ALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHhcchhhhhhhhcccH----HHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888899987776542 33444432211 0112233335556666665432 23344444445555443
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=6.4e-05 Score=73.65 Aligned_cols=160 Identities=12% Similarity=0.150 Sum_probs=92.3
Q ss_pred HHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCC-------------------CCCCEEEEEEec-CCCCHHHH
Q 038480 141 KVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTP-------------------NDFDVVIWVVVS-KDMQLERI 199 (850)
Q Consensus 141 ~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s-~~~~~~~~ 199 (850)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45556655555 5788999999999999999988762110 12222 222211 1111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCch-hHhhhc-cC
Q 038480 200 QEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV-DVCSLM-GA 275 (850)
Q Consensus 200 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~ 275 (850)
.+++.+.+.. .-..+.+-++|+||++.. ...+.+...+......+.+|++|++. .+...+ ..
T Consensus 81 i~~i~~~~~~--------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 81 VRELVEFLSR--------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HHHHHHHHcc--------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 1122222111 001245668999999643 23444444443333455666666543 222222 12
Q ss_pred cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchH
Q 038480 276 QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLA 325 (850)
Q Consensus 276 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 325 (850)
...+.+.+++.++....+.+. + . + ++.+..|++.++|.|..
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~-g--i---~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 147 CQVLPFPPLSEEALLQWLIRQ-G--I---S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred cEEeeCCCCCHHHHHHHHHHc-C--C---C---HHHHHHHHHHcCCCccc
Confidence 358999999999999888876 1 1 1 45688999999998853
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.13 E-value=2e-05 Score=78.81 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
...+.|+|..|+|||.|.+.+++...+ ...-..+++++ ..++...++..+.. .. ...+.+.+++ -
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~---~~----~~~~~~~~~~-~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRD---GE----IEEFKDRLRS-A 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHT---TS----HHHHHHHHCT-S
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHc---cc----chhhhhhhhc-C
Confidence 457899999999999999999998722 12223466664 45555666655532 11 2334455553 3
Q ss_pred EEEEEcccCCcc---ccccc-cccCC-CCCCCeEEEEecCchh---------HhhhccCcceEeccCCChhhHHHHHHHH
Q 038480 231 FLLLLDDVWERI---DLVKV-GVPFP-TSENASKVVFTTRLVD---------VCSLMGAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 231 ~LlVlDdv~~~~---~~~~~-~~~l~-~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
=+|++||++... .|... ...+. ....|.+||+|++... ..+.+...-.+++.+++.++-..++.+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 378999997532 22221 11110 0124567999985432 2344455678999999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 297 VGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+....... .+++++-|++.+.+..-.+
T Consensus 179 a~~~~~~l---~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 179 AKERGIEL---PEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHTT--S----HHHHHHHHHHTTSSHHHH
T ss_pred HHHhCCCC---cHHHHHHHHHhhcCCHHHH
Confidence 86544222 2556777777776554444
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.3e-06 Score=66.20 Aligned_cols=57 Identities=33% Similarity=0.499 Sum_probs=52.8
Q ss_pred cceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCC
Q 038480 485 RDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKN 541 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~ 541 (850)
++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 36889999999999986 4688999999999999999999999999999999999999
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=84.37 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=107.8
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE-ecCCCCHHHHHHHHHHHh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV-VSKDMQLERIQEKIGERI 207 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 207 (850)
..++|.+..++.+.+++..++++ .+.++|+.|+||||+|+.+++... -....+...|.. +......-..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35789999999999999877665 488999999999999999988762 111111000000 000000000001111000
Q ss_pred -------cCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-CchhHhhh
Q 038480 208 -------GSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLVDVCSL 272 (850)
Q Consensus 208 -------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~ 272 (850)
........+++. .+.+.+ .+++-++|+|+++.. ..+..+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000011122222 222333 245568999999743 34555544444334456665544 44444332
Q ss_pred cc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 273 MG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 273 ~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
+. ....+++.++++++....+...+....... .++.+..|++.++|.+.-+.
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 22 235789999999999888888764333112 25568999999999775443
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5e-05 Score=85.99 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=105.8
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC------------------CCCCEEEEEEe
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP------------------NDFDVVIWVVV 190 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 190 (850)
..++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.+.+...-.. +.|.-++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 35799999999999999876655 567999999999999999988751000 01112223332
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCc-h
Q 038480 191 SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRL-V 267 (850)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~-~ 267 (850)
+....+.+ .+++.+.+.. .-..+++-++|+|+++... ....+...+-.....+.+|++|.+ +
T Consensus 96 ~~~~~vd~-ir~l~~~~~~--------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQY--------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred cccCCHHH-HHHHHHHHhh--------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 22212211 1122221110 0113566799999997542 344444334333345556655543 3
Q ss_pred hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 268 DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 268 ~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
.+...+ .....+++.+++.++....+.+.+...+.. ..++....|++.++|.+.-+
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 332221 123578999999999998888876543322 12445688999999987544
No 108
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=5.9e-06 Score=96.18 Aligned_cols=89 Identities=25% Similarity=0.325 Sum_probs=46.0
Q ss_pred eEEEeecccccccc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 487 RRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 487 l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
++.|+|++|.+... +.+..+++|+.|+|++|.+.+..+..++.+++|++|+|++|...+.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555554432 2234555555555555555544433455555555555555533334555555555555555555
Q ss_pred cccc-cccchhh
Q 038480 565 TSIK-ELPNELK 575 (850)
Q Consensus 565 ~~i~-~LP~~i~ 575 (850)
|++. .+|..++
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 5554 4555444
No 109
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.1e-05 Score=86.20 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=110.5
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCC-CCCCEEEEEEecCCCCHHHHHHHHHHH-
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTP-NDFDVVIWVVVSKDMQLERIQEKIGER- 206 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~- 206 (850)
..++|.++..+.+...+..++. ..+.|+|+.|+||||+|..+.+...... ..+... ............+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4579999999999999987654 4688999999999999999988762110 001111 001111111122222221
Q ss_pred ------hcC---------CCCCCHHHHHHHHHHHhc-----cCcEEEEEcccCCc--cccccccccCCCCCCCeE-EEEe
Q 038480 207 ------IGS---------FGNKSLEEKASDIFKILS-----KKKFLLLLDDVWER--IDLVKVGVPFPTSENASK-VVFT 263 (850)
Q Consensus 207 ------l~~---------~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~-iivT 263 (850)
+.. ......++. ..+.+++. +++-++|+|+++.. ...+.+...+-.....+. |++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 000 011123332 34444443 56779999999743 223333322222222334 4555
Q ss_pred cCchhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 264 TRLVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 264 tR~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
++...+..... ....+++.+++.++...++.+...... -.++....+++.++|.|..+..+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55444432222 235899999999999999987432111 124457889999999998776544
No 110
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.3e-06 Score=84.30 Aligned_cols=218 Identities=17% Similarity=0.148 Sum_probs=109.4
Q ss_pred EEeecccccccccCC----CCCCccceeecccccCCCCc--hhhhcCCCcceEEEccCCCC---CcccChhhccccCCCe
Q 038480 489 RISLLRNKIVALSET----PTCPHLVTLFLAINKLDTIT--SNFFDFMPSLRVLNLSKNLS---LKQLPSEISKLVSLQY 559 (850)
Q Consensus 489 ~L~l~~n~~~~l~~~----~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~---i~~lp~~i~~l~~L~~ 559 (850)
-+.+.++.|.....+ ..+.+++.++|.+|.+++.. ..++.+||.|++|+|+.|+. |+.+| ..+.+|++
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 344444444433222 45777888888888776543 23467788888888888721 22233 23567888
Q ss_pred Eeecccccc--cccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 560 LNLSETSIK--ELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 560 L~Ls~~~i~--~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
|-|.++.+. ..-+.+. .++.++.|+++.|++....+ +....+.. -+.++.+.
T Consensus 126 lVLNgT~L~w~~~~s~l~---------------~lP~vtelHmS~N~~rq~n~---------Dd~c~e~~--s~~v~tlh 179 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLD---------------DLPKVTELHMSDNSLRQLNL---------DDNCIEDW--STEVLTLH 179 (418)
T ss_pred EEEcCCCCChhhhhhhhh---------------cchhhhhhhhccchhhhhcc---------cccccccc--chhhhhhh
Confidence 888777543 3333333 44445555555554322111 00000000 01122222
Q ss_pred EEeCchhhhhhhhcCCCccccceEEEeeecCCCCccc-cccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCcc
Q 038480 638 VSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLN-ISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQ 716 (850)
Q Consensus 638 l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~ 716 (850)
...|..............++++..+.+..|+- ++.. ......++.+--|+++.+ .+.++.. ......|+.|.
T Consensus 180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~-~idswas-----vD~Ln~f~~l~ 252 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGAN-NIDSWAS-----VDALNGFPQLV 252 (418)
T ss_pred cCCcHHHHHHHHHhHHhhcccchheeeecCcc-cchhhcccCCCCCcchhhhhccc-ccccHHH-----HHHHcCCchhh
Confidence 22222222222222233446777777766652 2221 123445566666777665 3433312 22233678888
Q ss_pred EEecccCCCCCCCcc-------cccCCCCceEE
Q 038480 717 RVTIDCCKKLKEVTW-------LAFAPNLKFVH 742 (850)
Q Consensus 717 ~L~L~~~~~l~~l~~-------l~~l~~L~~L~ 742 (850)
.|.+.+++....+.. ++.+++++.|+
T Consensus 253 dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 253 DLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 888888876655431 45667777665
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=8e-05 Score=85.01 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCC--EEEEEEecCCCCHHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFD--VVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
..++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.+.+... -..... ...+-.+... .--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCccc----HHHHHHhcC
Confidence 35799999999999999877644 688999999999999999988751 111100 0000000000 000111110
Q ss_pred hcC-------CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCchhHhh
Q 038480 207 IGS-------FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRLVDVCS 271 (850)
Q Consensus 207 l~~-------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~ 271 (850)
-.. ......+++. .+.+.+ .+++-++|+|+++.. .....+...+-.....+.+|+ |+....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 000 0111122222 122222 245568999999643 234444433433334566665 444444433
Q ss_pred hcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 272 LMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 272 ~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
.+. ....+.+..++.++....+.+.+.......+ .+....|++.++|.+.-+....
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 2357899999999999999888754442222 4567889999999886664433
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00014 Score=82.50 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC---------------------CCCCEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP---------------------NDFDVVIW 187 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~---------------------~~f~~~~w 187 (850)
..++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.+++...-.. .+.+ ++.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vie 91 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVE 91 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEE
Confidence 35799999999999999887655 468999999999999999988752000 0111 222
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-e
Q 038480 188 VVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-T 263 (850)
Q Consensus 188 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-T 263 (850)
+..+....+.++ ++|. +.+.. -..+++-++|+|+++.. .....+...+-.....+.+|+ |
T Consensus 92 idaas~~gvd~i-Rel~---------------~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 92 LDAASHGGVDDT-RELR---------------DRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred eccccccCHHHH-HHHH---------------HHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 222211111111 1111 11111 11345668999999743 344454444433334555554 5
Q ss_pred cCchhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHHhhh
Q 038480 264 TRLVDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIGRAM 333 (850)
Q Consensus 264 tR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~~l 333 (850)
|....+...+ .-...+++..++.++..+.+.+.+...+...+ .+....|++.++|.+. |+..+-.++
T Consensus 156 te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5544444332 23468999999999999888887754432222 4456888999999775 444444433
No 113
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.04 E-value=9e-05 Score=81.05 Aligned_cols=170 Identities=16% Similarity=0.255 Sum_probs=97.8
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3578999999998887631 234568899999999999999999986 222 222221
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc------------cc-cccccc---CC--CCCCC
Q 038480 197 ERIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI------------DL-VKVGVP---FP--TSENA 257 (850)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~~-~~~~~~---l~--~~~~g 257 (850)
..+.... . ... ......+.+.. ...+.+|+|||++... .. ..+... +. ....+
T Consensus 199 ~~l~~~~---~----g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQKF---I----GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHhh---c----cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1111111 1 111 12222233322 3467899999997421 01 111111 11 11235
Q ss_pred eEEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 258 SKVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 258 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
..||.||...+.... . .-...+.+...+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 667777765443211 1 1245799999999999999998876544222223 355666776643
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00012 Score=79.97 Aligned_cols=183 Identities=13% Similarity=0.151 Sum_probs=105.2
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccC-----CCCCCE-EEEEEecCCCCHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDT-----PNDFDV-VIWVVVSKDMQLERIQEKI 203 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~~s~~~~~~~~~~~i 203 (850)
.++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|.. ++-+......+..+ .+++
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHH
Confidence 579999999999999987654 478899999999999999998875210 111211 11111111111111 1122
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-CchhHhhh-ccCcceE
Q 038480 204 GERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLVDVCSL-MGAQKKF 279 (850)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~-~~~~~~~ 279 (850)
.+.+.. .-..+++-++++|++... ..+..+...+......+.+|++| ....+... ......+
T Consensus 97 ~~~~~~--------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v 162 (367)
T PRK14970 97 IDQVRI--------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIF 162 (367)
T ss_pred HHHHhh--------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeE
Confidence 221110 011245568999999643 23444433332223345555544 33333222 2233578
Q ss_pred eccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH-HHHHh
Q 038480 280 KIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL-ITIGR 331 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai-~~~~~ 331 (850)
++.++++++....+...+...+...+ ++.++.+++.++|.+-.+ ..+-.
T Consensus 163 ~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 163 DFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred ecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998887754442222 456888999999866543 43333
No 115
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=0.00017 Score=73.51 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC----EEEEEEecCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD----VVIWVVVSKDMQLERIQEKIGERIGS--FGNKSLEEKASDIF 223 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~ 223 (850)
..+-+.|+|.+|.|||++++++...+. ....-+ .++.|.....++...++..|+.+++. ....+.........
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 456799999999999999999998762 211111 47788888999999999999999998 23344555555556
Q ss_pred HHhcc-CcEEEEEcccCCccc--------cccccccCCCCCCCeEEEEecCchhHhhhcc-----CcceEeccCCChhh-
Q 038480 224 KILSK-KKFLLLLDDVWERID--------LVKVGVPFPTSENASKVVFTTRLVDVCSLMG-----AQKKFKIECLRDKE- 288 (850)
Q Consensus 224 ~~l~~-k~~LlVlDdv~~~~~--------~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~-----~~~~~~l~~L~~~e- 288 (850)
..++. +--+||+|++.+.-. .-.....+.+.-.-+-|.+-|+..--+-..+ -..++.+..-..++
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~e 218 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEE 218 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcH
Confidence 66654 455899999976311 1111122222223344566666433321111 12345555555443
Q ss_pred HHHHHHHHhCCC--CCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 289 AWELFLEKVGEE--PLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 289 ~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
...|+......- .....-...++++.|...++|+.--+..+
T Consensus 219 f~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 219 FRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 344443322111 11223345778999999999987655433
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.00052 Score=72.75 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=119.6
Q ss_pred CCcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
+..++||+.+++.+-+++.. +..+-+.|.|.+|.|||.+...++.+.. ....--.++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999998864 4677899999999999999999999872 111112557777776567777888887
Q ss_pred HHhcC--CCCCCHHHHHHHHHHHhccC--cEEEEEcccCCcc-----ccccccccCCCCCCCeEEEEecC--chhH----
Q 038480 205 ERIGS--FGNKSLEEKASDIFKILSKK--KFLLLLDDVWERI-----DLVKVGVPFPTSENASKVVFTTR--LVDV---- 269 (850)
Q Consensus 205 ~~l~~--~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~-----~~~~~~~~l~~~~~gs~iivTtR--~~~v---- 269 (850)
..+-. .......+....+.++..+. .+|+|+|.++... .+..+. -++ .-+++++|+.-- .-+.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lF-ewp-~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLF-EWP-KLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeeh-hcc-cCCcceeeeeeehhhhhHHHHH
Confidence 77722 22233355666777766553 5899999997421 111111 011 223455543211 1111
Q ss_pred hhhcc-----CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 270 CSLMG-----AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 270 ~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
...+. ....+...+.+.++-.+++.+...... .........+.+++++.|.---+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHH
Confidence 11111 235678899999999999999875543 112223344555555554443333
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00014 Score=86.05 Aligned_cols=177 Identities=11% Similarity=0.122 Sum_probs=106.9
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC---------------------CCCCEEEEE
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP---------------------NDFDVVIWV 188 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~---------------------~~f~~~~wv 188 (850)
.+||.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...-.. .++| ++++
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ei 94 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEI 94 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEe
Confidence 5799999999999999886655 578999999999999999988762100 1111 2223
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-C
Q 038480 189 VVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-R 265 (850)
Q Consensus 189 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R 265 (850)
.......++++ +++.+.+. ..-..++.-++|||+++.. ..++.+...+-.-...+.+|++| .
T Consensus 95 daas~~~Vd~i-R~l~~~~~--------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 95 DAASHGGVDDA-RELRERAF--------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cccccCCHHHH-HHHHHHHH--------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 22111112211 11111110 1112355668999999743 34445544443333455556544 4
Q ss_pred chhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 266 LVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 266 ~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
...+...+. ....|++..++.++....+.+.+....... ..+....|++.++|.+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 444443332 346889999999999988888764433221 2445678999999988544
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=6.3e-06 Score=58.31 Aligned_cols=40 Identities=40% Similarity=0.649 Sum_probs=30.8
Q ss_pred CcceEEEccCCCCCcccChhhccccCCCeEeeccccccccc
Q 038480 531 PSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELP 571 (850)
Q Consensus 531 ~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP 571 (850)
++|++|++++| .++.+|..+++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46888888888 88888877888888888888888887664
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=6.6e-05 Score=83.38 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=101.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
...+.|+|..|+|||+|++.+++.. .....-..+++++ ..++...+...+... ......+.+.++. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-----~~~~~~~~~~~~~-~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKT-----HKEIEQFKNEICQ-N 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHh-----hhHHHHHHHHhcc-C
Confidence 3568999999999999999999965 2112223445553 355667777666420 0122334444443 3
Q ss_pred EEEEEcccCCcc---cc-ccccccCCC-CCCCeEEEEecCch---------hHhhhccCcceEeccCCChhhHHHHHHHH
Q 038480 231 FLLLLDDVWERI---DL-VKVGVPFPT-SENASKVVFTTRLV---------DVCSLMGAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 231 ~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
-+||+||+.... .+ +.+...+.. ...|..||+|+... .+.+.+...-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 478899996432 11 222111110 12344688886532 22334445667889999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 297 VGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
+...... ..-.+++..-|++.++|.|-.+.-+.
T Consensus 288 ~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8543311 12236778999999999998775544
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00019 Score=82.12 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE-ecCCCCHHHHHHHHHHHh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV-VSKDMQLERIQEKIGERI 207 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 207 (850)
..++|.+..+..+.+++..+++. .+.++|+.|+||||+|+.+.+... -....+...|-. +.........-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 35799999999999999876654 488999999999999999988762 111111000110 000000000001110000
Q ss_pred -------cCCCCCCHHHHHHHHHHH----hccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCchhHhhhc
Q 038480 208 -------GSFGNKSLEEKASDIFKI----LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRLVDVCSLM 273 (850)
Q Consensus 208 -------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~ 273 (850)
........+++...+... ..+++-++|+|+++.. ...+.+...+-.....+.+|+ |++...+...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000111123332222111 2345668999999654 234444444433333455554 44444443322
Q ss_pred -cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 038480 274 -GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITI 329 (850)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 329 (850)
.....+++.+++.++....+.+.+....... ..+.++.|++.++|..- |+..+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 2346899999999998888887664333112 25568889999999654 44433
No 121
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.6e-06 Score=96.41 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=79.0
Q ss_pred cccccceEEEeecccccccccC-CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCe
Q 038480 481 VRKWRDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQY 559 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~ 559 (850)
...++++..|++.+|.+..+.. +..+++|++|++++|.++.+.. +..++.|+.|++++| .+..++ .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4455688888888888888877 7788899999999888877765 677888888999988 777766 3566888888
Q ss_pred Eeecccccccccch-hhcCCccceeecc
Q 038480 560 LNLSETSIKELPNE-LKALTNLKCWNLE 586 (850)
Q Consensus 560 L~Ls~~~i~~LP~~-i~~L~~L~~L~l~ 586 (850)
+++++|.+..++.. ...+.+|+.+.+.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 89988888877654 4566666666555
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=6.9e-05 Score=74.92 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=115.4
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEE-EEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIW-VVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.+..+..+.+.+.....+....+|++|.|||+-|+.++... --..-|.+++- .++|....+.-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh------
Confidence 3578999999999999887778899999999999999999998876 33355554432 334433222200000
Q ss_pred CCCCCCHHHHHHHHHHHh--ccCc-EEEEEcccCCc--cccccccccCCCCCCCeEEEEecCch-hHhhhcc-CcceEec
Q 038480 209 SFGNKSLEEKASDIFKIL--SKKK-FLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV-DVCSLMG-AQKKFKI 281 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~~~~~l 281 (850)
..+...+........ .-++ -.+|||+++.. +.|..++..+-.....++.|+.+... .+...+. -...|+.
T Consensus 109 ---ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 109 ---IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred ---hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 011111110000000 0133 48899999853 56887766555544555655443322 2221111 2246899
Q ss_pred cCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHh
Q 038480 282 ECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALITIGR 331 (850)
Q Consensus 282 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 331 (850)
++|.+++...-++.++..++...+ .+..+.|++.++|. --|+.++-+
T Consensus 186 k~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 186 KKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred CCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999999999999999876664443 44578899999984 445544443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00019 Score=82.55 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhc--------------------cCCCCCCEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFI--------------------DTPNDFDVVIWV 188 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~--------------------~~~~~f~~~~wv 188 (850)
..++|.+..++.+.+++..+... .+.++|+.|+||||+|+.+.+... ....+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 35799999999999999887655 578999999999999999887651 01123432 223
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecC
Q 038480 189 VVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTR 265 (850)
Q Consensus 189 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR 265 (850)
..+......++. ++++++... -..+++-++|+|+++.. ..+..+...+-.....+.+|+ ||+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~--------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP--------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC--------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 332222222222 122221110 01245568899999743 335555444433334555554 555
Q ss_pred chhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 266 LVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 266 ~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
...+...+. ....+++.+++.++....+.+.+...+...+ .+.+..|++.++|...-+
T Consensus 161 ~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 455543322 3467999999999999999887755442222 445788999999976544
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.94 E-value=8.1e-05 Score=76.99 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHH---hc------c------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC
Q 038480 131 TIVGLESTLDKVWRC---FE------E------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ 195 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~---l~------~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 195 (850)
.++|.+..+++|.+. .. . +....+.++|++|+||||+|+.+++.... ...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 468888777666433 21 0 23456789999999999999999886511 111111122333221
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc----------ccccccccCCCCCCCeEEEEecC
Q 038480 196 LERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI----------DLVKVGVPFPTSENASKVVFTTR 265 (850)
Q Consensus 196 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~gs~iivTtR 265 (850)
++... .+ ..........+ +.. ..-+|++|+++... ....+...+........+|+++.
T Consensus 84 --~l~~~---~~----g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 84 --DLVGE---YI----GHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred --Hhhhh---hc----cchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 11111 11 11111111112 111 23489999997421 12223222222223345555554
Q ss_pred chhHhh------hc-c-CcceEeccCCChhhHHHHHHHHhCCC
Q 038480 266 LVDVCS------LM-G-AQKKFKIECLRDKEAWELFLEKVGEE 300 (850)
Q Consensus 266 ~~~v~~------~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (850)
..+... .+ . ....+.+++++.+|-.+++.+.+...
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 322210 11 1 12468899999999999998887543
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00028 Score=78.42 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccC--------------------CCCCCEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDT--------------------PNDFDVVIWV 188 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 188 (850)
..++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.+..... ..+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 3579999999999999987665 467899999999999999998875210 01122 1222
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecC-
Q 038480 189 VVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTR- 265 (850)
Q Consensus 189 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR- 265 (850)
.........++ +++.+.+.. ....+++-++|+|+++.. ...+.+...+-.....+.+|++|.
T Consensus 96 ~g~~~~gid~i-r~i~~~l~~--------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVLF--------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred eccccCCHHHH-HHHHHHHHh--------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 21111111111 112111110 011356678999999643 233334333333233555665553
Q ss_pred chhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038480 266 LVDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIG 330 (850)
Q Consensus 266 ~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 330 (850)
...+...+ .....+++.++++++....+.+.+...+... .++.++.|++.++|.+. |+..+-
T Consensus 161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33332222 2235789999999999988887765433222 24567889999999764 444433
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00025 Score=81.89 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.+..++.+..++..+.+ ..+.++|..|+||||+|+.+++.. ....... ....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 3579999999999999887654 456899999999999999999876 1111000 0001111112222221111
Q ss_pred C-------CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhHhhhc
Q 038480 209 S-------FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDVCSLM 273 (850)
Q Consensus 209 ~-------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~ 273 (850)
. ......++. +.+.+.+ .+++-++|+|+++.. ...+.+...+-.....+.+|++|.+ ..+...+
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 0 001112221 1222222 245668999999643 3344444333333345566655543 3333222
Q ss_pred -cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 274 -GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 274 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.....+.+..++.++....+...+...+...+ .+.+..|++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22357889999999999888887754432222 45688999999998865543
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.00019 Score=74.75 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=71.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEE
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFL 232 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 232 (850)
.+.++|.+|+||||+|+.+++.. ...+.-...-|+.++. .++.... .+ . ........+.+ . ..-+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l~~~~---~g---~-~~~~~~~~l~~-a--~ggV 125 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDLVGQY---IG---H-TAPKTKEVLKK-A--MGGV 125 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHHHHHH---hc---c-chHHHHHHHHH-c--cCCE
Confidence 47899999999999999998865 1111111112444442 2222211 11 1 11111122222 2 2348
Q ss_pred EEEcccCCc-----------cccccccccCCCCCCCeEEEEecCchhHhhhc--------cCcceEeccCCChhhHHHHH
Q 038480 233 LLLDDVWER-----------IDLVKVGVPFPTSENASKVVFTTRLVDVCSLM--------GAQKKFKIECLRDKEAWELF 293 (850)
Q Consensus 233 lVlDdv~~~-----------~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~lf 293 (850)
|++|++... .....+...+.......+||+++....+...+ .....+.+.+++.+|..+++
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~ 205 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIA 205 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHH
Confidence 999999642 11122222233333456677777543332111 12357899999999999999
Q ss_pred HHHhCCC
Q 038480 294 LEKVGEE 300 (850)
Q Consensus 294 ~~~~~~~ 300 (850)
...+...
T Consensus 206 ~~~l~~~ 212 (287)
T CHL00181 206 KIMLEEQ 212 (287)
T ss_pred HHHHHHh
Confidence 8887543
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00027 Score=79.05 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=108.0
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC-------------------CCCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP-------------------NDFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 189 (850)
..++|-+..++.+...+..++.. +..++|+.|+||||+|+.+.+...... .+++ ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 35799999999999999877655 568999999999999999887751100 0111 22222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCch
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
.+....+.++. ++++.... .-..+++-++|+|+++.. .....+...+-.....+++|++|.+.
T Consensus 93 aas~~gId~IR-elie~~~~--------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 93 AASNRGIDDIR-ELIEQTKY--------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred cccccCHHHHH-HHHHHHhh--------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 21111122211 11111100 001245668999999643 33444433332333456666666543
Q ss_pred -hHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 268 -DVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 268 -~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
.+...+ .....+++.+++.++....+.+.+...+... .++.++.|++.++|.+.-+..+.
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 222111 2236889999999999999888775544222 24567899999999886554443
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00027 Score=81.24 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=103.6
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC----------------CCCEEEEEEecCC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN----------------DFDVVIWVVVSKD 193 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~----------------~f~~~~wv~~s~~ 193 (850)
.++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.+++...-... +++ ++++.....
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn 97 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASN 97 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEecccc
Confidence 5799999999999999876544 5679999999999999999876511000 011 111111111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEE-EecC
Q 038480 194 MQLERIQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVV-FTTR 265 (850)
Q Consensus 194 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ii-vTtR 265 (850)
...++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+-.....+.+| +|++
T Consensus 98 -------------------~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte 157 (725)
T PRK07133 98 -------------------NGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157 (725)
T ss_pred -------------------CCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCC
Confidence 11121 12222222 356669999999643 34444443332223344444 4555
Q ss_pred chhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 266 LVDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 266 ~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
...+...+ .....+++.+++.++....+...+...+... ..+.++.|++.++|.+.-+.
T Consensus 158 ~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 44443322 2335899999999999988887664433221 14457889999999765443
No 130
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=1.8e-05 Score=92.19 Aligned_cols=79 Identities=29% Similarity=0.371 Sum_probs=64.0
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccc-cccchhhcCCccceeecc
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIK-ELPNELKALTNLKCWNLE 586 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~l~ 586 (850)
.++.|+|++|.+.+..+..+..+++|+.|+|++|...+.+|..++.+++|++|+|++|++. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887766666888999999999998444588888999999999999999887 678888777777766664
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=4.6e-07 Score=99.31 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCccccCcccccccceEEEeecccccccccCCC---------------------------------CCCccceeeccccc
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALSETP---------------------------------TCPHLVTLFLAINK 518 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~---------------------------------~~~~L~~L~l~~n~ 518 (850)
+.+...+-++..++.+|+|-+.++++.....+. ....|.+.+++.|.
T Consensus 96 a~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 96 ARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred CCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 334444455667788888888887765422111 11123333333333
Q ss_pred CCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccch-hhcCCccceeecc-------cccc
Q 038480 519 LDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLE-------QLIS 590 (850)
Q Consensus 519 l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~-------~~i~ 590 (850)
+..... .+.-++.|+.|||++| .+.+.. .+..|++|++|||++|.+..+|.- ...+ +|+.|.++ .++.
T Consensus 176 L~~mD~-SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie 251 (1096)
T KOG1859|consen 176 LVLMDE-SLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIE 251 (1096)
T ss_pred HHhHHH-HHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHH
Confidence 322222 2444555666666666 555444 455566666666666655555432 1111 24555544 3445
Q ss_pred cCCCccEEeccCCC
Q 038480 591 SFSDLRVLRMLDCG 604 (850)
Q Consensus 591 ~l~~L~~L~l~~~~ 604 (850)
+|.+|+.|++++|-
T Consensus 252 ~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhhhccchhHhh
Confidence 55555555555554
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=0.0002 Score=74.76 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=70.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEE
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFL 232 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 232 (850)
-+.++|.+|+||||+|+.+++.. ...+.....-++.++. .++ ...+.. .+.......+.+ . ..-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~----~~l----~~~~~g---~~~~~~~~~~~~-a--~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR----DDL----VGQYIG---HTAPKTKEILKR-A--MGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----HHH----hHhhcc---cchHHHHHHHHH-c--cCcE
Confidence 58899999999999998887765 2122221112444442 122 222211 111111222222 2 3358
Q ss_pred EEEcccCCc-----------cccccccccCCCCCCCeEEEEecCchhHhhhcc--------CcceEeccCCChhhHHHHH
Q 038480 233 LLLDDVWER-----------IDLVKVGVPFPTSENASKVVFTTRLVDVCSLMG--------AQKKFKIECLRDKEAWELF 293 (850)
Q Consensus 233 lVlDdv~~~-----------~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~e~~~lf 293 (850)
|+||++... ..+..+...+.....+.+||.++.....-.... ....+.+.+++.+|-..++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 899999632 112223333333344566777665432211111 1357899999999999999
Q ss_pred HHHhCC
Q 038480 294 LEKVGE 299 (850)
Q Consensus 294 ~~~~~~ 299 (850)
...+..
T Consensus 205 ~~~l~~ 210 (284)
T TIGR02880 205 GLMLKE 210 (284)
T ss_pred HHHHHH
Confidence 887644
No 133
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=4.9e-05 Score=80.57 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHhcC--CCCCCHH--HHHHH-
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD--MQLERIQEKIGERIGS--FGNKSLE--EKASD- 221 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~--~~~~~~~--~~~~~- 221 (850)
+.-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.+...+-. .+..... ..+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 345689999999999999999999987 3 348999999999866 7899999998544332 1111111 11111
Q ss_pred ---HHHH-hccCcEEEEEcccCC
Q 038480 222 ---IFKI-LSKKKFLLLLDDVWE 240 (850)
Q Consensus 222 ---l~~~-l~~k~~LlVlDdv~~ 240 (850)
.... -.+++.+|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1111 257999999999953
No 134
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.90 E-value=0.00014 Score=78.50 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=71.4
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH-Hhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE-RIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~-~l~ 208 (850)
..+++.+...+.+...+... +.|.++|++|+|||++|+.+++.. .....|+.+.||.+++..+..++...+.- ..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 34688899999999998753 567789999999999999999987 44567888999999998887665532210 000
Q ss_pred CCCCCCHHHHHHHHHHHh--ccCcEEEEEcccCC
Q 038480 209 SFGNKSLEEKASDIFKIL--SKKKFLLLLDDVWE 240 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (850)
. . ....-..+.+.... .+++++||+|++..
T Consensus 252 y-~-~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 252 F-R-RKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred e-E-ecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0 0 00001111222222 24789999999963
No 135
>PRK06620 hypothetical protein; Validated
Probab=97.89 E-value=5.4e-05 Score=75.23 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF 231 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 231 (850)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..+ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------------------~-~-------~~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------------------N-E-------EILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh------------------c-h-------hHHh-cCC
Confidence 568999999999999999988765 11 1111 0000 0 0 1111 234
Q ss_pred EEEEcccCCccc--cccccccCCCCCCCeEEEEecCchhH-------hhhccCcceEeccCCChhhHHHHHHHHhCCCCC
Q 038480 232 LLLLDDVWERID--LVKVGVPFPTSENASKVVFTTRLVDV-------CSLMGAQKKFKIECLRDKEAWELFLEKVGEEPL 302 (850)
Q Consensus 232 LlVlDdv~~~~~--~~~~~~~l~~~~~gs~iivTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 302 (850)
++++||++...+ +-.+...+ ...|..||+|++.... .+.+...-.+.+++++.++-..++++.+.....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 788999963221 11111111 1346678888874332 333445568999999999988888887653322
Q ss_pred CCCCChHHHHHHHHHHcCCCchHH
Q 038480 303 VSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
..+ +++.+-|++.+.|.--.+
T Consensus 166 ~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 166 TIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCC---HHHHHHHHHHccCCHHHH
Confidence 222 566778888887654443
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2.3e-06 Score=95.07 Aligned_cols=84 Identities=29% Similarity=0.359 Sum_probs=62.1
Q ss_pred ccceEEEeecccccccc-cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 484 WRDRRRISLLRNKIVAL-SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
+..+..+++..|.+..+ .....+.+|..|++.+|.+..+... +..|++|++|++++| .|+.+. .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 44566666777777763 3467778888888888887766553 567888888888888 777766 4677777888888
Q ss_pred cccccccc
Q 038480 563 SETSIKEL 570 (850)
Q Consensus 563 s~~~i~~L 570 (850)
++|.|..+
T Consensus 148 ~~N~i~~~ 155 (414)
T KOG0531|consen 148 SGNLISDI 155 (414)
T ss_pred ccCcchhc
Confidence 88887766
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.87 E-value=0.00025 Score=78.62 Aligned_cols=158 Identities=22% Similarity=0.202 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
...+.|+|..|+|||+|++.+++... ....-..++++++ .++..++...+.. ... ..+.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~---~~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRN---NKM----EEFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHc---CCH----HHHHHHHHh-C
Confidence 34689999999999999999999872 2211234566643 3444455555432 122 223333433 3
Q ss_pred EEEEEcccCCccc---c-ccccccCCC-CCCCeEEEEecCc-hhH--------hhhccCcceEeccCCChhhHHHHHHHH
Q 038480 231 FLLLLDDVWERID---L-VKVGVPFPT-SENASKVVFTTRL-VDV--------CSLMGAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 231 ~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~iivTtR~-~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
-+|||||+..... + +.+...+.. ...+..+|+|+.. +.- .+.+.....+.+.+.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999974321 1 112111110 1134457777753 222 222333457899999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 297 VGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+.......+ +++...|++.+.|..-.+
T Consensus 281 ~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 865442222 566788888888876543
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0005 Score=76.95 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=105.3
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccC-C-----------------CCCCEEEEEEec
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDT-P-----------------NDFDVVIWVVVS 191 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-~-----------------~~f~~~~wv~~s 191 (850)
.++|.+..+..+.+++..+... .+.++|+.|+||||+|+.++...... . +.|.-++++..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 5789999999999999876544 56789999999999999998865100 0 011112222221
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-e
Q 038480 192 KDMQLERIQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-T 263 (850)
Q Consensus 192 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-T 263 (850)
..... ++ .+.+.+.+ .+++-++|+|+++.. .....+...+......+.+|+ |
T Consensus 97 s~~gv-------------------d~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 97 SNRGI-------------------DD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred cCCCH-------------------HH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 11111 11 11222222 356679999999743 234444333333333445554 4
Q ss_pred cCchhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 264 TRLVDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 264 tR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
|+...+...+ .....+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+..+..+.
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433333222 2335789999999999988888765443222 24557889999999776554433
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=0.00014 Score=79.57 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=96.4
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.+..++++.+.+.- ....-+.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 467899988888776631 134568899999999999999999976 3333 2222111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----------------cccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----------------LVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~gs~ 259 (850)
+... .. ..........+.....+.+.+|+||+++.... +..+...+. ....+.+
T Consensus 253 -L~~k----~~---Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 253 -LIQK----YL---GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred -hhhh----hc---chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 1111 10 11111122222223346788999999863210 001111111 1123567
Q ss_pred EEEecCchhHhhhc-----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 260 VVFTTRLVDVCSLM-----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 260 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
||.||...+..... .....|.+...+.++..++|..++.........++ ..++..+.|.-
T Consensus 325 VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 325 VIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred EEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 88888755553221 22467899999999999999988755443333333 44555555543
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00044 Score=79.67 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=106.3
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++|.+..+..+..++..++. ..+.++|..|+||||+|+.+++... +...+... ..........+.+......
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCCc
Confidence 478999999999999987653 5778999999999999999998862 11111000 0011111122222111110
Q ss_pred -------CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-CchhHhhhcc
Q 038480 210 -------FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLVDVCSLMG 274 (850)
Q Consensus 210 -------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~~ 274 (850)
......++..+.+ +.+ .+++-++|+|+++.. ..+..+...+-.....+.+|++| ....+...+.
T Consensus 91 D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred cEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 0111122222211 211 245568999999743 33444544443323345455444 3333332222
Q ss_pred -CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 275 -AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 275 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
....+.+..++.++....+...+.......+ .+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2356888899999988888877654332211 355788999999987655443
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00017 Score=80.05 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
..-+.|+|..|+|||+|++.+++... .... ..++|++. .++..++...+.. ... ..+.+.++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~---~~~----~~f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKE---GKL----NEFREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhc---ccH----HHHHHHHHhc
Confidence 34699999999999999999999862 2222 24667753 4556666655532 112 2233444445
Q ss_pred cEEEEEcccCCcc---cc-ccccccCCC-CCCCeEEEEecC-chhHh--------hhccCcceEeccCCChhhHHHHHHH
Q 038480 230 KFLLLLDDVWERI---DL-VKVGVPFPT-SENASKVVFTTR-LVDVC--------SLMGAQKKFKIECLRDKEAWELFLE 295 (850)
Q Consensus 230 ~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~iivTtR-~~~v~--------~~~~~~~~~~l~~L~~~e~~~lf~~ 295 (850)
.-+|++||+.... .+ ..+...+.. ...|..||+||. .+.-. +.+.....+.+++.+.++-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 6689999997431 11 122111110 112446888774 33322 2233456789999999999999998
Q ss_pred HhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 296 KVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
.+.......+ +++..-|++.+.|.--.+
T Consensus 275 ~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 8764332222 567888888888765443
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00034 Score=76.15 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=96.6
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 468998888888776531 135678899999999999999999876 2333 22211 1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc------------c----cccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI------------D----LVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~~~~gs~ 259 (850)
.+.... ++ .....+...+.......+.+|++|+++... . +..+...+. ....+..
T Consensus 214 ~l~~k~---~g----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 214 EFVQKY---LG----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred HHHHHh---cc----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 111111 11 111112222222334678999999986321 0 111111111 1224567
Q ss_pred EEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 260 VVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 260 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
||.||...+.... . .-+..+.+...+.++...+|..+........+.+ ..++++.+.|..
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 8888875544321 1 2345789999999998899987765443222233 345666666654
No 143
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=2.3e-05 Score=73.34 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=72.2
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh--hhccccCCCeEeec
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS--EISKLVSLQYLNLS 563 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~--~i~~l~~L~~L~Ls 563 (850)
....+++++|++..++.++.++.|.+|.+.+|.++.+.+..-.-+++|..|.|.+| .+.++-+ .+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 56678999999999999999999999999999999998887777888999999999 7766532 36678999999999
Q ss_pred cccccccc
Q 038480 564 ETSIKELP 571 (850)
Q Consensus 564 ~~~i~~LP 571 (850)
+|+++..+
T Consensus 122 ~Npv~~k~ 129 (233)
T KOG1644|consen 122 GNPVEHKK 129 (233)
T ss_pred CCchhccc
Confidence 99877553
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.80 E-value=0.0002 Score=85.84 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=97.6
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccC--CC-CCCEEEE-EEecCCCCHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDT--PN-DFDVVIW-VVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~-~f~~~~w-v~~s~~~~~~~~~~~i~~ 205 (850)
..++||+.++.++++.|......-+.++|.+|+||||+|+.++++.... .. -.+..+| +..+.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----------
Confidence 3579999999999999877655667799999999999999999886211 10 1123333 22221000
Q ss_pred HhcCCCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc-------ccc--cccccCCCCCCC-eEEEEecCchhHh---
Q 038480 206 RIGSFGNKSLEEKASDIFKILS--KKKFLLLLDDVWERI-------DLV--KVGVPFPTSENA-SKVVFTTRLVDVC--- 270 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~--~~~~~l~~~~~g-s~iivTtR~~~v~--- 270 (850)
+.....+.++....+.+.++ +++.+|++|++.... .-+ .+..+. -..| -++|-||...+..
T Consensus 257 --g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 257 --GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKYF 332 (852)
T ss_pred --ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhhh
Confidence 00000111122222222222 468999999996431 111 122222 2233 4455555433221
Q ss_pred ----hhccCcceEeccCCChhhHHHHHHHHhCCCCC-CCCCChHHHHHHHHHHcCCC
Q 038480 271 ----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPL-VSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 271 ----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~ 322 (850)
....-...+.+.+++.+++.+++......... ..-.-..+....+++.+.+.
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11122358999999999999997654422110 01111244556677777654
No 145
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=2.4e-06 Score=74.52 Aligned_cols=100 Identities=19% Similarity=0.316 Sum_probs=80.6
Q ss_pred ceEEEeecccccccccC----CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEe
Q 038480 486 DRRRISLLRNKIVALSE----TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLN 561 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~ 561 (850)
.+..++++++.+..+++ ......|...++++|.+..+|+.+-..++.++.|+|++| .+.++|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 34556666666554432 356678888999999999999998888889999999999 9999999999999999999
Q ss_pred ecccccccccchhhcCCccceeecc
Q 038480 562 LSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 562 Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
++.|++...|..+..|.+|-.|+..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCC
Confidence 9999999999888877777666543
No 146
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.77 E-value=0.00027 Score=75.70 Aligned_cols=145 Identities=10% Similarity=0.122 Sum_probs=82.8
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.+..++.+..++..+.. .++.++|++|+||||+|+.+++.. ... +..+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 3579999999999999987654 466679999999999999999875 222 23444443 222221111111100
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cc-cccccccCCCCCCCeEEEEecCchhH-hhhc-cCcceEeccC
Q 038480 209 SFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--ID-LVKVGVPFPTSENASKVVFTTRLVDV-CSLM-GAQKKFKIEC 283 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-~~~~~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~~~~~l~~ 283 (850)
. ..+.+.+-++|+||++.. .+ ...+...+.....++++|+||..... ...+ .....+.+..
T Consensus 94 ~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 94 T--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred h--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 0 001234568999999744 11 12222222223356778888864332 1111 1224677777
Q ss_pred CChhhHHHHHHH
Q 038480 284 LRDKEAWELFLE 295 (850)
Q Consensus 284 L~~~e~~~lf~~ 295 (850)
.+.++...++..
T Consensus 160 p~~~~~~~il~~ 171 (316)
T PHA02544 160 PTKEEQIEMMKQ 171 (316)
T ss_pred CCHHHHHHHHHH
Confidence 788777666543
No 147
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.77 E-value=1.6e-05 Score=80.53 Aligned_cols=122 Identities=23% Similarity=0.334 Sum_probs=69.2
Q ss_pred cccceEEEeeccccccc--ccC----CCCCCccceeecccccCCCCchhh-------------hcCCCcceEEEccCCCC
Q 038480 483 KWRDRRRISLLRNKIVA--LSE----TPTCPHLVTLFLAINKLDTITSNF-------------FDFMPSLRVLNLSKNLS 543 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~--l~~----~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~~~~ 543 (850)
.+++++.|+|+.|.+.. ++. +.+|..|+.|.|.+|.+...-... ...-+.||++...+| .
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-r 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-R 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-c
Confidence 34577778888776532 221 255777888888877654322221 234556777777777 5
Q ss_pred CcccC-----hhhccccCCCeEeecccccc-----cccchhhcCCccceeecc-------------cccccCCCccEEec
Q 038480 544 LKQLP-----SEISKLVSLQYLNLSETSIK-----ELPNELKALTNLKCWNLE-------------QLISSFSDLRVLRM 600 (850)
Q Consensus 544 i~~lp-----~~i~~l~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~l~-------------~~i~~l~~L~~L~l 600 (850)
+..-+ ..+...+.|+.+.++.|.|. -+...+..+++|+.||++ ..++.+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 55433 23445567777777777553 123345555666665555 33445555555555
Q ss_pred cCCCC
Q 038480 601 LDCGF 605 (850)
Q Consensus 601 ~~~~~ 605 (850)
.+|.+
T Consensus 249 ~dcll 253 (382)
T KOG1909|consen 249 GDCLL 253 (382)
T ss_pred ccccc
Confidence 55543
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00052 Score=76.02 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=88.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF 231 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 231 (850)
..+.|+|..|+|||+|++.+++... . ....+++++ ...+...+...+.. .. ...+++.++. .-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~--~~~~v~yi~------~~~f~~~~~~~l~~---~~----~~~f~~~~~~-~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-E--SGGKILYVR------SELFTEHLVSAIRS---GE----MQRFRQFYRN-VD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-H--cCCCEEEee------HHHHHHHHHHHHhc---ch----HHHHHHHccc-CC
Confidence 5688999999999999999999872 1 123345554 33444555555432 11 1234444433 34
Q ss_pred EEEEcccCCccc----cccccccCCC-CCCCeEEEEecCc-hh--------HhhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 232 LLLLDDVWERID----LVKVGVPFPT-SENASKVVFTTRL-VD--------VCSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 232 LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+|++||+..... .+.+...+.. ...|..||+||.. +. +.+.+.....+.+.+++.++-..++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 888999964321 1112111100 0134568887754 22 22334445688999999999999999887
Q ss_pred CCCCCCCCCChHHHHHHHHHHcCCC
Q 038480 298 GEEPLVSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 298 ~~~~~~~~~~~~~~~~~i~~~~~G~ 322 (850)
.......+ +++..-|++.+.|.
T Consensus 285 ~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 285 EALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCC
Confidence 55432222 45566677766654
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.75 E-value=0.00017 Score=85.73 Aligned_cols=154 Identities=14% Similarity=0.224 Sum_probs=88.0
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccC--CCCC-CEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDT--PNDF-DVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++||+.+++++++.|......-+.++|.+|+|||++|+.++++.... ...+ +..+|. + +...+.. ..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a----~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA----GT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----hc
Confidence 579999999999999977655667799999999999999999986211 1111 333432 1 1111110 00
Q ss_pred cCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc----------ccccccccCCCCCCC-eEEEEecCchhHh-----
Q 038480 208 GSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI----------DLVKVGVPFPTSENA-SKVVFTTRLVDVC----- 270 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~g-s~iivTtR~~~v~----- 270 (850)
. ...+.++....+.+.+ +.++.+|++|+++... +...+..+. -..| -++|-+|...+..
T Consensus 254 ~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~--l~~g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 254 K--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA--LSSGKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred c--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH--HhCCCeEEEEecCHHHHHHHhhh
Confidence 0 0112333344444443 3468899999997321 111222221 1223 3444444322211
Q ss_pred --hhccCcceEeccCCChhhHHHHHHHHh
Q 038480 271 --SLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 271 --~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
....-...+.++.++.++..++++...
T Consensus 330 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111123578999999999999998655
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.73 E-value=0.00027 Score=79.28 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
...+.|+|..|+|||+|++.+++... ....-..+++++. .++..++...+.. .. ...+.+.++ +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~---~~----~~~~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRN---NT----MEEFKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHc---Cc----HHHHHHHHh-cC
Confidence 35689999999999999999999872 2111234556643 3334444444432 11 123334444 34
Q ss_pred EEEEEcccCCccc----cccccccCCC-CCCCeEEEEecCchh---------HhhhccCcceEeccCCChhhHHHHHHHH
Q 038480 231 FLLLLDDVWERID----LVKVGVPFPT-SENASKVVFTTRLVD---------VCSLMGAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 231 ~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
-+||+||+..... .+.+...+.. ...|..||+|+.... +.+.+.....+.+++++.++-..++++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 4899999964211 1122111100 112445777775432 1233444568999999999999999998
Q ss_pred hCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 297 VGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+....... .+++..-|++.++|..-.+
T Consensus 293 ~~~~~~~l---~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 293 AEEEGIDL---PDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHcCCCC---CHHHHHHHHcCcCCCHHHH
Confidence 85433222 2567888999998876643
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.6e-05 Score=92.26 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=38.1
Q ss_pred ceEEEeecccccccc----cCCCCCCccceeecccccCCC-CchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeE
Q 038480 486 DRRRISLLRNKIVAL----SETPTCPHLVTLFLAINKLDT-ITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYL 560 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l----~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L 560 (850)
++++|++.+...-.- .-...+|.|++|.+.+-.+.. -....+.++++|+.||+|++ +++.+ ..++.|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 666666665332100 011345556666555533211 11223445555555555555 55555 345555555555
Q ss_pred eeccccc
Q 038480 561 NLSETSI 567 (850)
Q Consensus 561 ~Ls~~~i 567 (850)
.+++=.+
T Consensus 201 ~mrnLe~ 207 (699)
T KOG3665|consen 201 SMRNLEF 207 (699)
T ss_pred hccCCCC
Confidence 5554433
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0012 Score=75.20 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC--------------------CCCEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN--------------------DFDVVIWV 188 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 188 (850)
..++|-+..++.+..++..++.+ .+.++|+.|+||||+|+.+++... -.. +++ ++++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~i 93 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTPMPCGECSSCKSIDNDNSLD-VIEI 93 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCCCCCccchHHHHHHcCCCCC-eEEe
Confidence 35799999999999999876554 578999999999999999988762 111 122 1122
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHH---HH-HhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE
Q 038480 189 VVSKDMQLERIQEKIGERIGSFGNKSLEEKASDI---FK-ILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF 262 (850)
Q Consensus 189 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv 262 (850)
..... ...++..... .. -..+++-++|+|++... ..+..+...+-.....+.+|+
T Consensus 94 dgas~-------------------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 94 DGASN-------------------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCccc-------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 11111 1122222111 11 12356668999999643 345555444433334555665
Q ss_pred ecC-chhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 263 TTR-LVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 263 TtR-~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
+|. ...+...+. ....+++.+++.++....+.+.+....... .++.+..|++.++|.+..+..+
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 554 333332222 235689999999999888888774433222 2556788999999988655433
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.72 E-value=0.00079 Score=66.41 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHhc----cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFE----EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|.|..++.+++-.. .....-+.+||..|+|||++++.+.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 468999999998876443 3455678899999999999999999987
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00024 Score=73.25 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=103.4
Q ss_pred CCcccchhHHHHHHHHHhccCC---ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEEVQ---VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
++.+.+|+..+..+...+.+.. ...|.|.|.+|.|||.+++++.+.. ..+ .+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~---~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLE---NVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCc---ceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999997642 3456899999999999999999886 222 489999999999999999999
Q ss_pred HhcC--CCCCCH----HHH---HHHHHH--Hhc--cCcEEEEEcccCCcccccccccc----CC--CCCCCeEEEEecCc
Q 038480 206 RIGS--FGNKSL----EEK---ASDIFK--ILS--KKKFLLLLDDVWERIDLVKVGVP----FP--TSENASKVVFTTRL 266 (850)
Q Consensus 206 ~l~~--~~~~~~----~~~---~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~~~----l~--~~~~gs~iivTtR~ 266 (850)
+.+. .+.... +.. ...+.+ ... ++.++||||+++...+.+.+.-+ +. ...+...|+...-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 9853 111111 111 122222 122 45899999999765544432110 00 11223333332221
Q ss_pred -hhH-hhhccCc--ceEeccCCChhhHHHHHHHH
Q 038480 267 -VDV-CSLMGAQ--KKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 267 -~~v-~~~~~~~--~~~~l~~L~~~e~~~lf~~~ 296 (850)
+.. ...++.. .++.....+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 2224443 35677888999998888653
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0006 Score=78.33 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=105.0
Q ss_pred CcccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC-------------------CCCEEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN-------------------DFDVVIWVV 189 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 189 (850)
..++|.+..+..+.+++..+++. .+.++|+.|+||||+|+.+.+...-... ++|. +.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-FEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-eeee
Confidence 35799999999999999877654 5679999999999999999887511000 1111 1111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEE-ecCc
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVF-TTRL 266 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iiv-TtR~ 266 (850)
......+.++ +++.+.+.. .-..+++-++|+|+++.. .....+...+-.....+.+|+ ||..
T Consensus 95 ~~s~~~v~~i-r~l~~~~~~--------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 95 GASNTGVDDI-RELRENVKY--------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred ccCccCHHHH-HHHHHHHHh--------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 1111111111 111111110 001245568999999643 234444333322233455554 5554
Q ss_pred hhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc-hHHHHHHh
Q 038480 267 VDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP-LALITIGR 331 (850)
Q Consensus 267 ~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~ 331 (850)
..+...+. ....+++.+++.++....+...+...+...+ .+....|++.++|.. .|+..+-.
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44443222 2357889999999998888877654432222 455788999999866 44444433
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=1.4e-06 Score=95.69 Aligned_cols=119 Identities=27% Similarity=0.391 Sum_probs=85.5
Q ss_pred cccceEEEeecccccccc-cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeE
Q 038480 483 KWRDRRRISLLRNKIVAL-SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYL 560 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L 560 (850)
.|.++...+.++|.+..+ ..+.-++.|+.|+|++|.++.+. ++..|++|+.|||+.| .+..+|. +...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heee
Confidence 466777777777777655 33455677888888888877665 4778888888888888 7777774 222333 8888
Q ss_pred eecccccccccchhhcCCccceeecc----------cccccCCCccEEeccCCCCC
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~ 606 (850)
++++|.++.| .++.+|.+|+.||++ ..++.|..|+.|++.+|.+-
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888887777 477888888888887 34566677778888877643
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0024 Score=67.39 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=107.7
Q ss_pred cccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccC------------CCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDT------------PNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s~~~~~~ 197 (850)
.++|.+..++.+.+.+..+++ +...++|+.|+||+++|..+.+...-. .....-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 578999999999999988764 688999999999999999887765211 0111122343211000000
Q ss_pred HHHHHHHHHhcC----CCCCCHHHHHHHHHHHhc-----cCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc
Q 038480 198 RIQEKIGERIGS----FGNKSLEEKASDIFKILS-----KKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL 266 (850)
Q Consensus 198 ~~~~~i~~~l~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~ 266 (850)
.+-..-++..+. ......++ ++.+.+.+. +++-++|+|+++.. .....+...+-...+..-|++|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 000011111110 01112222 233444443 56679999999643 2333333333211233334445544
Q ss_pred hhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 267 VDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 267 ~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..+...+. -...+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 44433333 346899999999999999988643221 1111367899999999776543
No 158
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00019 Score=76.63 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=34.7
Q ss_pred hccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCc
Q 038480 627 LINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLE 696 (850)
Q Consensus 627 L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 696 (850)
+..+.++..|+++.+.+..++. ++.+|+.|.+++|..+..++ ..+ .++|+.|.+++|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV------LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC------CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccc
Confidence 4455666666666554444332 23466777777766665554 222 2467777777665444
No 159
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00017 Score=76.97 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=50.8
Q ss_pred ccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCC
Q 038480 657 SSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAP 736 (850)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~ 736 (850)
.+++.|++++| .++.+| .+ .++|++|.+++|..+..+ +.. -+++|++|.+.+|..+..+| +
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~L--P~sLtsL~Lsnc~nLtsL-------P~~--LP~nLe~L~Ls~Cs~L~sLP-----~ 112 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VL--PNELTEITIENCNNLTTL-------PGS--IPEGLEKLTVCHCPEISGLP-----E 112 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CC--CCCCcEEEccCCCCcccC-------Cch--hhhhhhheEccCcccccccc-----c
Confidence 57889999988 466665 12 247999999999888755 211 24689999999997776655 5
Q ss_pred CCceEEeec
Q 038480 737 NLKFVHIER 745 (850)
Q Consensus 737 ~L~~L~L~~ 745 (850)
+|+.|+++.
T Consensus 113 sLe~L~L~~ 121 (426)
T PRK15386 113 SVRSLEIKG 121 (426)
T ss_pred ccceEEeCC
Confidence 678888764
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00055 Score=80.40 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=88.9
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCC---CCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPND---FDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++||+++++++++.|......-+.++|.+|+|||++|+.+++........ .++.+|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 479999999999999877544556789999999999999999875221111 23444421 11111 10
Q ss_pred cCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCc----------cccccccccCCCCCCCeEEEEecCchhHhh-----
Q 038480 208 GSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWER----------IDLVKVGVPFPTSENASKVVFTTRLVDVCS----- 271 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~gs~iivTtR~~~v~~----- 271 (850)
+.....+.++....+.+.+ +.++.+|++|++... .+...+..++... ..-+||-+|...+...
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D 334 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhcc
Confidence 0000112233333343333 356789999999632 1121222222221 2244554444333211
Q ss_pred --hccCcceEeccCCChhhHHHHHHHHh
Q 038480 272 --LMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 272 --~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
...-...+.+..++.+++..++....
T Consensus 335 ~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 335 RALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11122579999999999999998765
No 161
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.002 Score=73.78 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=103.7
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCC--------------------CCCEEEEE
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPN--------------------DFDVVIWV 188 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 188 (850)
..++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+.+... ... ++| ++.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~~pC~~C~~C~~i~~g~~~d-v~ei 93 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDGEPCNECEICKAITNGSLMD-VIEI 93 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCCCCC-eEEe
Confidence 3579999999999999987644 4567899999999999999987651 111 111 1122
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-----hccCcEEEEEcccCCc--cccccccccCCCCCCCeEEE
Q 038480 189 VVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKI-----LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVV 261 (850)
Q Consensus 189 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ii 261 (850)
..+.. ...++ .+.+.+. ..++.-++|+|+++.. ..+..+...+-.....+.+|
T Consensus 94 daas~-------------------~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifI 153 (559)
T PRK05563 94 DAASN-------------------NGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFI 153 (559)
T ss_pred ecccc-------------------CCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEE
Confidence 21111 11111 1122222 2356668999999743 34444543333323344455
Q ss_pred E-ecCchhHhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 262 F-TTRLVDVCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 262 v-TtR~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
+ ||....+...+ .....+.+.+++.++....+...+...+...+ .+....|++.++|.+..+.
T Consensus 154 latt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 154 LATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4 44443333222 22357889999999999988887754432222 4557888999998776543
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0021 Score=72.60 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=93.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF 231 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 231 (850)
..+.|+|..|+|||.|++.+++... ....--.+++++ ..++..++...+.. .. ...+++.+++ .=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yit------aeef~~el~~al~~---~~----~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVS------SEEFTNEFINSIRD---GK----GDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEee------HHHHHHHHHHHHHh---cc----HHHHHHHhhc-CC
Confidence 4589999999999999999999862 111123456664 34444455444321 11 1223333333 24
Q ss_pred EEEEcccCCc---cccc-cccccCCC-CCCCeEEEEecCch---------hHhhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 232 LLLLDDVWER---IDLV-KVGVPFPT-SENASKVVFTTRLV---------DVCSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 232 LlVlDdv~~~---~~~~-~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+|||||+... ..|. .+...+.. ...|..|||||+.. .+.+.+...-.+.+...+.+.-..++.+.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999643 1121 12111110 12345688888752 223445566789999999999999999988
Q ss_pred CCCCCCCCCChHHHHHHHHHHcCCCchH
Q 038480 298 GEEPLVSHPDIPMLAQAMAKECAGLPLA 325 (850)
Q Consensus 298 ~~~~~~~~~~~~~~~~~i~~~~~G~Pla 325 (850)
.......+ +++..-|++.+.+..-.
T Consensus 460 ~~r~l~l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 460 VQEQLNAP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred HhcCCCCC---HHHHHHHHHhccCCHHH
Confidence 65443322 56677777777765433
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.57 E-value=0.00078 Score=81.44 Aligned_cols=155 Identities=12% Similarity=0.187 Sum_probs=87.9
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCC----CCEEEEEEecCCCCHHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPND----FDVVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.++||+.+++++++.|......-+.++|.+|+|||++|..+..+.. .... ....+|.- +...+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~l~a----- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGALIA----- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHHHhh-----
Confidence 4799999999999999776556677999999999999999998862 1111 12233321 1111110
Q ss_pred hcCCCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc---------ccccccccCCCCCCC-eEEEEecCchhHhh---
Q 038480 207 IGSFGNKSLEEKASDIFKILS--KKKFLLLLDDVWERI---------DLVKVGVPFPTSENA-SKVVFTTRLVDVCS--- 271 (850)
Q Consensus 207 l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~g-s~iivTtR~~~v~~--- 271 (850)
+.....+.+.....+.+.+. +++.+|++|++.... +...+..+.. ..| -++|-+|...+.-.
T Consensus 243 -~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 243 -GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIE 319 (852)
T ss_pred -cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhh
Confidence 00001122223333333332 468999999997432 1112222222 233 34444444343311
Q ss_pred ----hccCcceEeccCCChhhHHHHHHHHhCC
Q 038480 272 ----LMGAQKKFKIECLRDKEAWELFLEKVGE 299 (850)
Q Consensus 272 ----~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (850)
...-...+.+...+.++...++......
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 1112346889999999999998876543
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00091 Score=80.52 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCC---C-CCE-EEEEEecCCCCHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN---D-FDV-VIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~-f~~-~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.++||+.+++++++.|......-+.++|.+|+|||++|+.+..... ... . ... ++++.++.- ...
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~l------~ag--- 248 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGAL------VAG--- 248 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhhh------hhc---
Confidence 4799999999999999776666777999999999999999998862 111 0 122 233322211 000
Q ss_pred HhcCCCCCCHHHHHHHHHHHh--ccCcEEEEEcccCCcc---------ccccccccCCCCCCC-eEEEEecCchhHh---
Q 038480 206 RIGSFGNKSLEEKASDIFKIL--SKKKFLLLLDDVWERI---------DLVKVGVPFPTSENA-SKVVFTTRLVDVC--- 270 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~g-s~iivTtR~~~v~--- 270 (850)
.....+.++....+.+.+ .+++.+|++|++.... +...+..+.. ..| -++|-||...+..
T Consensus 249 ---~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 249 ---AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYI 323 (857)
T ss_pred ---cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHHHh
Confidence 000011222233333222 2568999999997432 1122222222 233 3455444433321
Q ss_pred ----hhccCcceEeccCCChhhHHHHHHHHhC
Q 038480 271 ----SLMGAQKKFKIECLRDKEAWELFLEKVG 298 (850)
Q Consensus 271 ----~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (850)
....-...+.+...+.++...++.....
T Consensus 324 ~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 324 EKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred hhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 1111223677888899999998876653
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.0005 Score=82.82 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=87.4
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhcc--CCCCC-CEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFID--TPNDF-DVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++||+++++++++.|......-+.++|.+|+|||++|+.++..... +.... +..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------ 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------ 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------
Confidence 47999999999999997755556679999999999999999988621 11111 234443 1 2211111
Q ss_pred cCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc---------ccccccccCCCCCCCeEEEEecCchhHhh------
Q 038480 208 GSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI---------DLVKVGVPFPTSENASKVVFTTRLVDVCS------ 271 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~iivTtR~~~v~~------ 271 (850)
+.....+.++....+.+.+ ..++.+|++|+++... +...+..+.... ..-++|-+|...+...
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHhcCH
Confidence 1101112333333333333 3568999999996321 111222221111 1234555555444311
Q ss_pred -hccCcceEeccCCChhhHHHHHHHH
Q 038480 272 -LMGAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 272 -~~~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
......++.+...+.++...++...
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122356888999999988887754
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.00047 Score=76.70 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=87.7
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCC---CCCEEEEEEecCCC
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN---DFDVVIWVVVSKDM 194 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~ 194 (850)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. .... .+....++.+....
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccchh
Confidence 467899999888877531 134568899999999999999999986 2110 12233444444321
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCcc---------cc-----ccccccCCC--
Q 038480 195 QLERIQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWERI---------DL-----VKVGVPFPT-- 253 (850)
Q Consensus 195 ~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~~-----~~~~~~l~~-- 253 (850)
++.. .. . ..+.....+.+.. .+++.+|+||+++... +. ..+...+..
T Consensus 262 ----Ll~k----yv---G-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 262 ----LLNK----YV---G-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ----hccc----cc---c-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1110 00 0 0111122222222 3478999999997421 11 122111211
Q ss_pred CCCCeEEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCC
Q 038480 254 SENASKVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGE 299 (850)
Q Consensus 254 ~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (850)
...+..||.||...+.... . .-+..|++...+.++..++|+.+...
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1134445556654443221 1 22456899999999999999988743
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0026 Score=67.49 Aligned_cols=154 Identities=8% Similarity=0.083 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCC-------------------CCCCEEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTP-------------------NDFDVVIWVVVSKDMQLERIQEKIGERIGSFG 211 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 211 (850)
...+.++|+.|+||||+|+.+.....-.. .|-| ..|+.-... ..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~----------------~~ 84 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA----------------DK 84 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC----------------CC
Confidence 44678999999999999999888762100 1112 122211100 00
Q ss_pred CCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh-Hhhhcc-CcceEecc
Q 038480 212 NKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD-VCSLMG-AQKKFKIE 282 (850)
Q Consensus 212 ~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~~-~~~~~~l~ 282 (850)
....++..+ +.+.+ .+++-++|+|+++.. .....+...+-....++.+|+||.+.+ +...+. -...+.+.
T Consensus 85 ~i~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 85 TIKVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCCHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 112222222 22222 244556678999743 334444333322234566776666543 333322 23578999
Q ss_pred CCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 283 CLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 283 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
+++.+++.+.+.+..... ..+.+..++..++|.|+.+..+
T Consensus 164 ~~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999998887654211 1334567889999999866544
No 168
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0077 Score=59.33 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=104.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec-CCCCHHHHHHHHHHHhcCCCCCCHH----HHHHHHH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS-KDMQLERIQEKIGERIGSFGNKSLE----EKASDIF 223 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~l~ 223 (850)
++.+++.|+|.-|.|||.+++...... . -+.++-|.+. +..+...+...+...+......... +..+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 456799999999999999999665554 1 1122224444 3456777888888888763333333 3333344
Q ss_pred HHh-ccCc-EEEEEcccCCc--ccccccc--ccCCCC-CCCeEEEEecC----c---hhHhhhccC-cce-EeccCCChh
Q 038480 224 KIL-SKKK-FLLLLDDVWER--IDLVKVG--VPFPTS-ENASKVVFTTR----L---VDVCSLMGA-QKK-FKIECLRDK 287 (850)
Q Consensus 224 ~~l-~~k~-~LlVlDdv~~~--~~~~~~~--~~l~~~-~~gs~iivTtR----~---~~v~~~~~~-~~~-~~l~~L~~~ 287 (850)
+.. ++++ ..+++||.... ..++.++ ..+... ..--+|+..-. . ..+....+- ... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 433 4677 89999999643 2232221 111111 11122332211 1 111111111 123 899999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHh
Q 038480 288 EAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGR 331 (850)
Q Consensus 288 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 331 (850)
+...++...........+--.++....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999888876554222222345678899999999999987765
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.0031 Score=71.74 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=93.3
Q ss_pred cccchhHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDKVWRCFE---E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
.++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HH
Confidence 46788877666654432 1 123358899999999999999999875 2222 22221 11
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc----c--------cc----cccccCC--CCCCCeEE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI----D--------LV----KVGVPFP--TSENASKV 260 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~--------~~----~~~~~l~--~~~~gs~i 260 (850)
+... .. ......+...+.......+.+|++||++... . .. .+...+. ....+..|
T Consensus 124 ~~~~----~~---g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 124 FVEM----FV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHH----Hh---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 1111 10 1122222333333445677899999996421 0 11 1111111 12234456
Q ss_pred EEecCchhHhh-----hccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 261 VFTTRLVDVCS-----LMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 261 ivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
|.||...+... .-.-...+.+...+.++-.++|+.++........ .....+++.+.|.-
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 66665543211 1123467899999999999999887754332211 12457888887743
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00045 Score=63.90 Aligned_cols=87 Identities=22% Similarity=0.147 Sum_probs=50.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhccCc
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-FGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~k~ 230 (850)
..+.|+|++|+||||+|+.++... . .....++++..+........... ...... ............+.+..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-G--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-C--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999887 2 22234566655544332222111 011111 112233333445555555444
Q ss_pred -EEEEEcccCCcc
Q 038480 231 -FLLLLDDVWERI 242 (850)
Q Consensus 231 -~LlVlDdv~~~~ 242 (850)
.++++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 899999997653
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=2.7e-05 Score=77.03 Aligned_cols=231 Identities=19% Similarity=0.143 Sum_probs=120.6
Q ss_pred cceeecccccCCCCc--hhhhcCCCcceEEEccCCCCCccc---ChhhccccCCCeEeecccccccccchhhcCCcccee
Q 038480 509 LVTLFLAINKLDTIT--SNFFDFMPSLRVLNLSKNLSLKQL---PSEISKLVSLQYLNLSETSIKELPNELKALTNLKCW 583 (850)
Q Consensus 509 L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L 583 (850)
+..|.+.++.+.... ..+-..+..++.|||.+| .+... ..-+.+|++|++|+++.|++. +.|+.++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~---s~I~~lp----- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLS---SDIKSLP----- 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCC---CccccCc-----
Confidence 335556666554432 233456778899999998 66543 333467889999999988654 2233332
Q ss_pred ecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhh-cCCCccccceEE
Q 038480 584 NLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLW-SSPKLQSSTKSL 662 (850)
Q Consensus 584 ~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~-~~~~~~~~L~~L 662 (850)
-.+.+|++|-+.+.++.- ...-..+..++.++.|.++.|+...+..-. +.....+.+++|
T Consensus 118 ------~p~~nl~~lVLNgT~L~w-------------~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tl 178 (418)
T KOG2982|consen 118 ------LPLKNLRVLVLNGTGLSW-------------TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTL 178 (418)
T ss_pred ------ccccceEEEEEcCCCCCh-------------hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhh
Confidence 133456666666554321 123344666777777777665432211000 001112344555
Q ss_pred EeeecCCCCccccccc-cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCC---CcccccCCCC
Q 038480 663 QLRECKDSKSLNISYL-ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKE---VTWLAFAPNL 738 (850)
Q Consensus 663 ~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~---l~~l~~l~~L 738 (850)
.+..|..........+ .-++++..+.+..|+.-. .... .....++.+..|.|..+ ++.+ +..+..+|.|
T Consensus 179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~e-----k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l 251 (418)
T KOG2982|consen 179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-ESSE-----KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQL 251 (418)
T ss_pred hcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-hhhc-----ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchh
Confidence 5544432111111111 235777777777775322 1000 11113666667777766 3333 3346678888
Q ss_pred ceEEeecccccceeccccccCCCCCCCcCCCccEeecc
Q 038480 739 KFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQ 776 (850)
Q Consensus 739 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~ 776 (850)
..|.+++++..+.+-..+... --++.+++++.|+=+
T Consensus 252 ~dlRv~~~Pl~d~l~~~err~--llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 252 VDLRVSENPLSDPLRGGERRF--LLIARLTKVQVLNGS 287 (418)
T ss_pred heeeccCCcccccccCCcceE--EEEeeccceEEecCc
Confidence 888888877665553311100 134566677766543
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.00013 Score=51.69 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=31.0
Q ss_pred CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 507 PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 507 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
++|++|++++|.++.+++. +++|++|++|++++| .++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888887765 788999999999998 777665
No 173
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0025 Score=68.40 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDI----FKI 225 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l----~~~ 225 (850)
...-+.+.|++|+|||+||..++.. ..|..+--++-..- -..++.+....+ .+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-----------------iG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-----------------IGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-----------------cCccHHHHHHHHHHHHHHh
Confidence 4556789999999999999999875 35664433321110 022233333333 334
Q ss_pred hccCcEEEEEcccCCccccccccccCC-------------CCCCCeEEEE--ecCchhHhhhccC----cceEeccCCCh
Q 038480 226 LSKKKFLLLLDDVWERIDLVKVGVPFP-------------TSENASKVVF--TTRLVDVCSLMGA----QKKFKIECLRD 286 (850)
Q Consensus 226 l~~k~~LlVlDdv~~~~~~~~~~~~l~-------------~~~~gs~iiv--TtR~~~v~~~~~~----~~~~~l~~L~~ 286 (850)
-+..--.||+||++...+|..++..|. ...+|-|.+| ||-...+...|+- ...|.+..++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 455667999999998888877765443 1234555554 7777788877764 35788999987
Q ss_pred -hhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHc
Q 038480 287 -KEAWELFLEKVGEEPLVSHPDIPMLAQAMAKEC 319 (850)
Q Consensus 287 -~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 319 (850)
++..+.++..-- -.+...+.++++...+|
T Consensus 675 ~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 777777776421 12334566677777776
No 174
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0018 Score=66.50 Aligned_cols=194 Identities=18% Similarity=0.253 Sum_probs=116.2
Q ss_pred ccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 132 IVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
+=|-++.+++|.+.+.- +..+=|.++|++|.|||-||++|+++. ...| +.|...
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----- 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----- 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH-----
Confidence 44788888888777631 245678899999999999999999986 3333 433332
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhc-cCcEEEEEcccCCcc----------c------cccccccCCCC--CCCeE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILS-KKKFLLLLDDVWERI----------D------LVKVGVPFPTS--ENASK 259 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~------~~~~~~~l~~~--~~gs~ 259 (850)
++++..-+ +-..+.+.+.+.-+ ..+..|++|.++... + .-++..-+..+ ....|
T Consensus 220 ---ElVqKYiG----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 220 ---ELVQKYIG----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred ---HHHHHHhc----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 22222111 11234444555444 468999999997321 0 11122222222 34578
Q ss_pred EEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc----hHHHHHH
Q 038480 260 VVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP----LALITIG 330 (850)
Q Consensus 260 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----lai~~~~ 330 (850)
||.+|...++..- + .-++.|++..-+.+.-.++|+-++.......+-++ +.+++.|.|.- -||.+=|
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHH
Confidence 9988876666322 2 23567888866777777889888877665555555 55666666654 4566667
Q ss_pred hhhc--CCC---CHHHHHHHHHHH
Q 038480 331 RAMG--SKN---TPEEWRYAIEML 349 (850)
Q Consensus 331 ~~l~--~~~---~~~~w~~~l~~l 349 (850)
++++ ..+ +.+.+..+.+..
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHHH
Confidence 7553 322 345555555443
No 175
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0018 Score=70.93 Aligned_cols=163 Identities=19% Similarity=0.187 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcCCCCC
Q 038480 135 LESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGSFGNK 213 (850)
Q Consensus 135 r~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 213 (850)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++..-+.. +...+ .+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~---------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDL---------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHH----------
Confidence 33445555555544333 99999999999999997777765 122 4555433221 11111 111
Q ss_pred CHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh------ccCcceEeccCCChh
Q 038480 214 SLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL------MGAQKKFKIECLRDK 287 (850)
Q Consensus 214 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~ 287 (850)
...+.+.-..++..++||.|....+|+.....+.+.+.. +|++|+-+...... .+-...+.+.||+..
T Consensus 84 -----~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 84 -----LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111112277899999999999999887777666555 88888876655321 123467899999999
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 288 EAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 288 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
|-..+-. .. .........-+-.-..||.|.++..
T Consensus 158 Efl~~~~-----~~--~~~~~~~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 158 EFLKLKG-----EE--IEPSKLELLFEKYLETGGFPESVKA 191 (398)
T ss_pred HHHhhcc-----cc--cchhHHHHHHHHHHHhCCCcHHHhC
Confidence 9876654 10 0000111122233357889988754
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00038 Score=63.61 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|+|+.|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 177
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0057 Score=73.38 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=83.1
Q ss_pred CcccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI 203 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 203 (850)
..++|.+..++.|.+++.. .+.+++.++|++|+|||++|+.+++.. ...|- -+.++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~---~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV---RFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeE---EEeCCCcccHHHHcCC-
Confidence 3478999999998887642 234589999999999999999999986 33332 2223332233222110
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc---------cccccc-----cCCCC-------CCCeEEEE
Q 038480 204 GERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID---------LVKVGV-----PFPTS-------ENASKVVF 262 (850)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~~~~-----~l~~~-------~~gs~iiv 262 (850)
-..............+..... ++-+++||+++.... +..+.. .|.+. ....-+|.
T Consensus 393 ---~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred ---CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 000111112222333333322 334789999964311 111111 11111 12333444
Q ss_pred ecCchhH-h-hhccCcceEeccCCChhhHHHHHHHHh
Q 038480 263 TTRLVDV-C-SLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 263 TtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
||..... . ........+.+.+++.++-..++.++.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5543322 1 111223578999999988888886653
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.0024 Score=68.50 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=85.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC--EEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD--VVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILS 227 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 227 (850)
....+.|||..|.|||.|++.+++.. ..... .++++ +.+....+++..+.. .....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-------hhHHHHHHhh-
Confidence 36789999999999999999999997 23333 34444 234444444444321 2234455554
Q ss_pred cCcEEEEEcccCCccc---c-ccccccCCC-CCCCeEEEEecCch---------hHhhhccCcceEeccCCChhhHHHHH
Q 038480 228 KKKFLLLLDDVWERID---L-VKVGVPFPT-SENASKVVFTTRLV---------DVCSLMGAQKKFKIECLRDKEAWELF 293 (850)
Q Consensus 228 ~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 293 (850)
.-=++++||++-... | +++...|.. ...|-.||+|++.. .+.+.+...-.+.+.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 334889999974322 1 122111110 12233799998542 23455566778999999999999999
Q ss_pred HHHhCCCCCCCC
Q 038480 294 LEKVGEEPLVSH 305 (850)
Q Consensus 294 ~~~~~~~~~~~~ 305 (850)
.+.+.......+
T Consensus 254 ~kka~~~~~~i~ 265 (408)
T COG0593 254 RKKAEDRGIEIP 265 (408)
T ss_pred HHHHHhcCCCCC
Confidence 997765543333
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0017 Score=70.93 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred cccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
++=|.+....++.+.+.. ...+-|.++|++|+|||.||+.+++.. . -. ++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--VP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--Cc-----eEeecch-----
Confidence 345788888888777642 135568899999999999999999987 2 22 3334333
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc---cc----------cccccc---CCC-CCCCe-EE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI---DL----------VKVGVP---FPT-SENAS-KV 260 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~----------~~~~~~---l~~-~~~gs-~i 260 (850)
+|+..+ .+.+++.+.+.+.+....-++++++|+++-.. +| ..+... +.. ...|- .+
T Consensus 258 ---eivSGv---SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 258 ---EIVSGV---SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred ---hhhccc---CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 233322 23444445555555667789999999997321 01 011111 111 11122 23
Q ss_pred EE--ecCchhHh---hhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC
Q 038480 261 VF--TTRLVDVC---SLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 261 iv--TtR~~~v~---~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 322 (850)
|| |+|-..+- ...+ -++.|.+.--++..-.+++...+.+-.....-++ ++|++..-|.
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 33 45543332 1122 2467888888888888888777654432333333 5555655553
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=7e-05 Score=86.94 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=71.2
Q ss_pred CCccceeeccccc--CCCCchhhhcCCCcceEEEccCCCCCc-ccChhhccccCCCeEeecccccccccchhhcCCccce
Q 038480 506 CPHLVTLFLAINK--LDTITSNFFDFMPSLRVLNLSKNLSLK-QLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKC 582 (850)
Q Consensus 506 ~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~ 582 (850)
-.+|+.|++++.. ..+.+...-..+|.|+.|.+++-.... ++-.-..++++|..||+|+|+++.+ .++++|+||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4679999998866 344555556679999999999862222 2233346789999999999999988 78899999988
Q ss_pred eecc----------cccccCCCccEEeccCCC
Q 038480 583 WNLE----------QLISSFSDLRVLRMLDCG 604 (850)
Q Consensus 583 L~l~----------~~i~~l~~L~~L~l~~~~ 604 (850)
|.+. ..+..|++|+.||++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 8775 244556666666666544
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.38 E-value=0.0013 Score=65.89 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=73.4
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE--ec--CC--C---CH----H
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV--VS--KD--M---QL----E 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~--~s--~~--~---~~----~ 197 (850)
.+.++......++.++.+. .+|.+.|.+|+|||+||..+..+.. ..+.|+.++-+. ++ +. | +. .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 3567888888888888763 5999999999999999999988641 124455444332 11 10 0 11 1
Q ss_pred HHHHHHHHHhcC-CCCCCHHHHHH----H----HHHHhccCcE---EEEEcccCCccccccccccCCCCCCCeEEEEecC
Q 038480 198 RIQEKIGERIGS-FGNKSLEEKAS----D----IFKILSKKKF---LLLLDDVWERIDLVKVGVPFPTSENASKVVFTTR 265 (850)
Q Consensus 198 ~~~~~i~~~l~~-~~~~~~~~~~~----~----l~~~l~~k~~---LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR 265 (850)
-.++.+...+.. .+....+.... . =..+++++.+ +||+|++.+... ..+...+...+.+|++|+|--
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCC
Confidence 122222222221 01111111110 0 0235667665 999999976532 222222334467899998865
Q ss_pred c
Q 038480 266 L 266 (850)
Q Consensus 266 ~ 266 (850)
.
T Consensus 212 ~ 212 (262)
T PRK10536 212 I 212 (262)
T ss_pred h
Confidence 3
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.38 E-value=0.004 Score=71.92 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=95.0
Q ss_pred cccchhHHHHHHHHH---hccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDKVWRC---FEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
++.|.++.++++.+. +... ..+-|.++|++|+|||++|+.+++.. ... ++.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----H
Confidence 467887766665444 3321 23468899999999999999999875 222 2332211 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc------------c----cccccccCC--CCCCCeEE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI------------D----LVKVGVPFP--TSENASKV 260 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~~~~gs~i 260 (850)
+... .. ..........+.......+.+|++||++... . +..+...+. ....+..|
T Consensus 252 f~~~----~~---g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 252 FVEM----FV---GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHHH----hh---hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 1111 10 1111222333444456788999999996321 1 112211111 12345556
Q ss_pred EEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC
Q 038480 261 VFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG 321 (850)
Q Consensus 261 ivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 321 (850)
|.||...+.... . .-+..+.+...+.++-.++++.++...... .......+++.+.|
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 667765444221 1 124678899999999999999887653211 12235677888777
No 183
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.37 E-value=0.0087 Score=64.01 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHhccCCceEEEEEcCCCChHHHHH-HHHHHhhccCCCCCCEEEEEEecCC---CCHHHHHHHHHHHhcC-
Q 038480 135 LESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLL-TQINNKFIDTPNDFDVVIWVVVSKD---MQLERIQEKIGERIGS- 209 (850)
Q Consensus 135 r~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~- 209 (850)
|.+.+++|-.||.+..-.+|.|.|+-|+||+.|+ .++.++. +. ++.++|.+- .+-..+.+.++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-KN------VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-CC------EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999887789999999999999999 7777664 11 666766542 2344455555555543
Q ss_pred --------------------------CCCCCHHHHHHHHH---HHhc--------------------------cCcEEEE
Q 038480 210 --------------------------FGNKSLEEKASDIF---KILS--------------------------KKKFLLL 234 (850)
Q Consensus 210 --------------------------~~~~~~~~~~~~l~---~~l~--------------------------~k~~LlV 234 (850)
..+....++...+. ..|+ .++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 11122222222111 0111 1255899
Q ss_pred EcccCCcc-----------ccccccccCCCCCCCeEEEEecCchhHhhh----c--cCcceEeccCCChhhHHHHHHHHh
Q 038480 235 LDDVWERI-----------DLVKVGVPFPTSENASKVVFTTRLVDVCSL----M--GAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 235 lDdv~~~~-----------~~~~~~~~l~~~~~gs~iivTtR~~~v~~~----~--~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+|++.... +|... +. ..+-..||++|-+...... + ...+.+.|...+.+-|..+...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 99995431 23322 21 2344568888876555332 2 234678999999999999999887
Q ss_pred CCCCCC------------CC-----CChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHH
Q 038480 298 GEEPLV------------SH-----PDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPE 340 (850)
Q Consensus 298 ~~~~~~------------~~-----~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~ 340 (850)
...... .. .....-....++..||=-.-+..+++.+++..++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 543100 00 12334457788889999999999999888876554
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00067 Score=77.59 Aligned_cols=192 Identities=13% Similarity=0.173 Sum_probs=98.5
Q ss_pred CcccchhHHHHHHHHHhccC-----CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec---CCCCHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEV-----QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS---KDMQLERIQE 201 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~-----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s---~~~~~~~~~~ 201 (850)
..++|.+..++++..++... ..+++.|+|++|+||||+++.++... .++.+-|+.-. ...+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-----hhHHHHHhhhhhhcccccccccch
Confidence 35789999999999988652 34579999999999999999999875 12223332110 0000111111
Q ss_pred HHHHHhcCCCCCCHH---HHHHHHHH---H----hccCcEEEEEcccCCcc-----ccccccc-cCCCCCCCeEEEEecC
Q 038480 202 KIGERIGSFGNKSLE---EKASDIFK---I----LSKKKFLLLLDDVWERI-----DLVKVGV-PFPTSENASKVVFTTR 265 (850)
Q Consensus 202 ~i~~~l~~~~~~~~~---~~~~~l~~---~----l~~k~~LlVlDdv~~~~-----~~~~~~~-~l~~~~~gs~iivTtR 265 (850)
.+..++... ....+ ........ . ..+++.+|++|++.+.. .+..+.. .+...+.-.-|+|||.
T Consensus 159 s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE 237 (637)
T TIGR00602 159 SLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITE 237 (637)
T ss_pred hhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecC
Confidence 222222111 00111 11111111 1 13567899999995321 2333333 2222222234555663
Q ss_pred chh---------Hh-------hhc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCC----hHHHHHHHHHHcCCCc
Q 038480 266 LVD---------VC-------SLM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPD----IPMLAQAMAKECAGLP 323 (850)
Q Consensus 266 ~~~---------v~-------~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~----~~~~~~~i~~~~~G~P 323 (850)
+.. .. ... .....|.+.++...+-.+.+.+.+.......... ..+....|+..++|--
T Consensus 238 ~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred CccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 211 00 001 1224689999999997777777764332111111 2355677777777754
Q ss_pred hHHH
Q 038480 324 LALI 327 (850)
Q Consensus 324 lai~ 327 (850)
..+.
T Consensus 318 RsAI 321 (637)
T TIGR00602 318 RSAI 321 (637)
T ss_pred HHHH
Confidence 4433
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00027 Score=66.45 Aligned_cols=129 Identities=23% Similarity=0.316 Sum_probs=86.5
Q ss_pred eEEEeecccccccccCC-CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhcc-ccCCCeEeecc
Q 038480 487 RRRISLLRNKIVALSET-PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISK-LVSLQYLNLSE 564 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~-l~~L~~L~Ls~ 564 (850)
-+.+++.+..+..+... .-......++|++|.+..++. |..++.|..|.|++| .|..+...++. +++|..|.|.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 44555665555444333 224467788999998776654 888999999999999 88887666665 67799999999
Q ss_pred cccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCc
Q 038480 565 TSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRS 642 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 642 (850)
|+|.++- .+ ..+..|++|++|.+.+|..... ...-.--+..+++|+.|++....
T Consensus 98 Nsi~~l~----dl---------~pLa~~p~L~~Ltll~Npv~~k-----------~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELG----DL---------DPLASCPKLEYLTLLGNPVEHK-----------KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhh----hc---------chhccCCccceeeecCCchhcc-----------cCceeEEEEecCcceEeehhhhh
Confidence 9887652 11 2235677778887777764321 11122235677888888877443
No 186
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00037 Score=71.88 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=58.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF 231 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 231 (850)
..+.++|..|+|||.||..+++... . ....+++++ ..+++..+..........+ ...+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~--~~~~v~~~~------~~~ll~~i~~~~~~~~~~~----~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-E--KGVPVIFVN------FPQLLNRIKSTYKSSGKED----ENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhcccccc----HHHHHHHhcCCC-
Confidence 3588999999999999999999972 1 234456664 4445666655443211112 222344455444
Q ss_pred EEEEcccC--Ccccccc--ccccCCC-CCCCeEEEEecCc
Q 038480 232 LLLLDDVW--ERIDLVK--VGVPFPT-SENASKVVFTTRL 266 (850)
Q Consensus 232 LlVlDdv~--~~~~~~~--~~~~l~~-~~~gs~iivTtR~ 266 (850)
||||||+. ...+|.. +...+.. -..+..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999994 2333422 1111110 1234568888873
No 187
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00015 Score=69.04 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=29.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV 188 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (850)
+.|.|+|++|+||||||+.+++...-..-+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3589999999999999999999872222567777763
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.012 Score=62.05 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccC----------------CCCCCEEEEEEe-cCCCCHHH
Q 038480 137 STLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDT----------------PNDFDVVIWVVV-SKDMQLER 198 (850)
Q Consensus 137 ~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~----------------~~~f~~~~wv~~-s~~~~~~~ 198 (850)
...+.+.+.+..++++ .+.++|+.|+||+++|..+++...-. ..|-| ..|+.. ....+..
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k- 88 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDK- 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCccccc-
Confidence 3456677777666544 68899999999999999887765210 01111 122210 0000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhHh
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDVC 270 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 270 (850)
.......++ ++.+.+.+ .+++-++|+|+++.. ..-..+...+-....++.+|++|.+ ..+.
T Consensus 89 ----------~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 89 ----------LRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ----------ccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000011222 22222222 246679999999743 2223332223222345556665554 4444
Q ss_pred hhccC-cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 271 SLMGA-QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 271 ~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
..+.+ ...+.+.+++.+++...+... + .+ ...+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 33333 357899999999998888653 1 11 2236778999999998775443
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=6.9e-05 Score=65.66 Aligned_cols=86 Identities=30% Similarity=0.419 Sum_probs=76.7
Q ss_pred ceEEEeecccccccccCC--CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeec
Q 038480 486 DRRRISLLRNKIVALSET--PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLS 563 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls 563 (850)
++..+++++|.+..+|.- ..++.+++|++.+|.+.++|.+ +..|+.||.|+++.| .+...|.-+..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 677889999999887543 5677999999999999999998 999999999999999 888889889889999999999
Q ss_pred ccccccccch
Q 038480 564 ETSIKELPNE 573 (850)
Q Consensus 564 ~~~i~~LP~~ 573 (850)
+|.+..+|-.
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 9988888765
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.015 Score=67.37 Aligned_cols=103 Identities=22% Similarity=0.397 Sum_probs=67.2
Q ss_pred CcccchhHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.+..++.+.+.+.- ...++....|+.|||||-||+.++... -+.=+..+-++.|+-....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHH---
Confidence 4579999999999998852 245577789999999999999998876 1111344555444432222
Q ss_pred HHHHHHhcC-CCCCCHHHHHHHHHHHhccCcE-EEEEcccCC
Q 038480 201 EKIGERIGS-FGNKSLEEKASDIFKILSKKKF-LLLLDDVWE 240 (850)
Q Consensus 201 ~~i~~~l~~-~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 240 (850)
.+.+-+|. ++-.-.++ ...|-+.++.++| +|.||+++.
T Consensus 565 -sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 -SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhh
Confidence 22233333 12222222 4556777888988 899999974
No 191
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0085 Score=64.06 Aligned_cols=146 Identities=8% Similarity=0.022 Sum_probs=84.5
Q ss_pred cccc-hhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCC-------------------CCCCEEEEEE
Q 038480 131 TIVG-LESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTP-------------------NDFDVVIWVV 189 (850)
Q Consensus 131 ~~vg-r~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 189 (850)
.++| -+..++.+.+.+..++++ ...++|+.|+||||+|+.+.+...-.. .|.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3566 677788888888776554 568999999999999999987752100 0222211111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----hccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEe
Q 038480 190 VSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKI----LSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFT 263 (850)
Q Consensus 190 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivT 263 (850)
-+. ....++..+.+... ..+++-++|+|+++.. .....+...+-....++.+|++
T Consensus 86 ~~~-------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 86 DGQ-------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred ccc-------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEE
Confidence 111 11222222222111 2345568999999643 2334444444333456666666
Q ss_pred cCch-hHhhhcc-CcceEeccCCChhhHHHHHHH
Q 038480 264 TRLV-DVCSLMG-AQKKFKIECLRDKEAWELFLE 295 (850)
Q Consensus 264 tR~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~ 295 (850)
|.+. .+...+. -...+++.+++.++....+.+
T Consensus 147 t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 147 TENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 6543 3333222 346799999999999888865
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0029 Score=70.96 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=90.0
Q ss_pred cccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
.-+|.++.+++|++.|.- -+-++++++|++|||||+|++.+++-. ...| +-+++..-.|-.++-..=-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccccc
Confidence 348999999999998842 245799999999999999999999886 3444 3344544444433321111
Q ss_pred HHhcCCCCCCHHHHHHHHHHHh---ccCcEEEEEcccCCcc---------cccccccc-----CCC-----CCCCeEEE-
Q 038480 205 ERIGSFGNKSLEEKASDIFKIL---SKKKFLLLLDDVWERI---------DLVKVGVP-----FPT-----SENASKVV- 261 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~---------~~~~~~~~-----l~~-----~~~gs~ii- 261 (850)
-.+ ..+-.++.+.+ +.+.=+++||.++... .+-++..| |.+ .-.=|+|+
T Consensus 398 TYI--------GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYI--------GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccc--------ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111 11112232222 3466689999997321 11111111 111 01124454
Q ss_pred EecC-chh-H-hhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 262 FTTR-LVD-V-CSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 262 vTtR-~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
|||- +-+ + +..++...+|++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3443 322 2 2334456789999999999999888775
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.13 E-value=0.0055 Score=72.76 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCcccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
....+|.++.++.|++++.. ....++.++|++|+||||+|+.++... ...| +-+..+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEEcCCCCCHHHhccc
Confidence 34579999999999988852 245689999999999999999999875 2333 22333443333322211
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc------cccccccC---------------CCCCCCeEEE
Q 038480 203 IGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID------LVKVGVPF---------------PTSENASKVV 261 (850)
Q Consensus 203 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l---------------~~~~~gs~ii 261 (850)
-....+ .........+...- ...-+++||+++.... ...+...+ +..-...-+|
T Consensus 395 ~~~~~g----~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 395 RRTYIG----SMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hhccCC----CCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 111111 11112222332221 2334788999963211 11111111 1111233344
Q ss_pred EecCchhHhh-hccCcceEeccCCChhhHHHHHHHHh
Q 038480 262 FTTRLVDVCS-LMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 262 vTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
.|+.+..+.. ..+-..++++.+++.+|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4555433311 11223578999999999888887765
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.07 E-value=0.0011 Score=64.60 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC------CCHHH-------HH
Q 038480 134 GLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD------MQLER-------IQ 200 (850)
Q Consensus 134 gr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~------~~~~~-------~~ 200 (850)
.+..+....++.|. ...++.+.|++|.|||.||....-+. -..+.|+.++++.-.-. +-+.+ ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34556666777776 45799999999999999999988776 33488888888752111 10111 12
Q ss_pred HHHHHHhcC-CCCCCHHHHHHH------HHHHhccC---cEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc
Q 038480 201 EKIGERIGS-FGNKSLEEKASD------IFKILSKK---KFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL 266 (850)
Q Consensus 201 ~~i~~~l~~-~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~ 266 (850)
..+...+.. ......+...+. -..+++|+ ..+||+|++.+. .++..+.. ..+.|||||++--.
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE--
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCc
Confidence 222222222 112222222211 01334554 459999999654 45555543 34678999998653
No 195
>PRK07261 topology modulation protein; Provisional
Probab=97.06 E-value=0.0017 Score=62.30 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=43.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEE
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFL 232 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 232 (850)
.|.|+|++|+||||||+.+.....-..-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-------------------QERDDDDMIADISNFLLKHD-- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-------------------ccCCHHHHHHHHHHHHhCCC--
Confidence 488999999999999999987751112244555553221 12334555666666776666
Q ss_pred EEEcccCC
Q 038480 233 LLLDDVWE 240 (850)
Q Consensus 233 lVlDdv~~ 240 (850)
.|+|+.-.
T Consensus 61 wIidg~~~ 68 (171)
T PRK07261 61 WIIDGNYS 68 (171)
T ss_pred EEEcCcch
Confidence 67888754
No 196
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00034 Score=68.74 Aligned_cols=88 Identities=27% Similarity=0.387 Sum_probs=65.0
Q ss_pred ccccceEEEeecccccccccCCCCCCccceeeccccc--CCCCchhhhcCCCcceEEEccCCCCCcccC--hhhccccCC
Q 038480 482 RKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINK--LDTITSNFFDFMPSLRVLNLSKNLSLKQLP--SEISKLVSL 557 (850)
Q Consensus 482 ~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~l~~L 557 (850)
.....+.++++.+..++.+..++.+++|+.|.++.|. +..-.+-....+++|++|+|++| .+..+- ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 3445788888888888888888999999999999994 33333333556799999999999 666421 135667888
Q ss_pred CeEeecccccccc
Q 038480 558 QYLNLSETSIKEL 570 (850)
Q Consensus 558 ~~L~Ls~~~i~~L 570 (850)
..|++.+|....+
T Consensus 119 ~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 119 KSLDLFNCSVTNL 131 (260)
T ss_pred hhhhcccCCcccc
Confidence 8999988866543
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.04 E-value=0.0013 Score=65.49 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=30.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVV 190 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 190 (850)
-.++|+|..|+||||++..+.... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999999876 678888877754
No 198
>PHA00729 NTP-binding motif containing protein
Probab=97.03 E-value=0.0028 Score=62.37 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=28.4
Q ss_pred HHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 141 KVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 141 ~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999875
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0031 Score=61.67 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS-----FGNKSLEEKASDIFK 224 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~l~~ 224 (850)
++||.++|+.|+||||.+.+++... ..+ -..+..++... .....+-++..++.++. ....+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999998888877 222 44566676543 23466677888888876 223344454544444
Q ss_pred HhccCc-EEEEEcccC
Q 038480 225 ILSKKK-FLLLLDDVW 239 (850)
Q Consensus 225 ~l~~k~-~LlVlDdv~ 239 (850)
..+.++ =++++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 444444 377778763
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.01 E-value=0.0026 Score=61.10 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=62.7
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++||-++.++.+.-...++..+-+.|.||+|+||||-+..+++... -...-+.+.=...|....
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRG-------------- 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERG-------------- 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccc--------------
Confidence 35799999999998888888999999999999999999998888762 112223333333333322
Q ss_pred CCCCCHHHHHHHHHHHhc-------cCcEEEEEcccCCc
Q 038480 210 FGNKSLEEKASDIFKILS-------KKKFLLLLDDVWER 241 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~-------~k~~LlVlDdv~~~ 241 (850)
.+-...+|+.+-+ ++.-.+|||.+++.
T Consensus 92 -----IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 92 -----IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -----cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 3333334433332 45568999999864
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.99 E-value=0.01 Score=61.26 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 137 STLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 137 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
+-++++..++..+ .-|.+.|.+|+|||++|+.+.+.. .. ..+.++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555555543 356689999999999999998754 22 24566666665555544
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.032 Score=58.88 Aligned_cols=174 Identities=7% Similarity=0.072 Sum_probs=93.4
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCC------E--EEEEEecCCCCHHHHHHHHHHHhc
Q 038480 138 TLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD------V--VIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 138 ~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~------~--~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-+.+.+.+..+++ ....++|+.|+||+++|+.++....- ..... | +-++.....+|+..+.-. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-----~ 83 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI-----D 83 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc-----c
Confidence 34556667766554 46779999999999999998876521 01000 0 000000011111000000 0
Q ss_pred CCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhHhhhccC-cceE
Q 038480 209 SFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDVCSLMGA-QKKF 279 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~-~~~~ 279 (850)
......++.. .+.+.+ .+++-++|+|+++.. .....+...+-....++.+|++|.+ ..+...+.+ ...+
T Consensus 84 -~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 84 -NKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred -CCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0011222222 222322 356668899999743 3334443333333345566666654 344433332 4688
Q ss_pred eccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 280 KIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.+.+++.++..+.+....... ...+...+..++|.|+.+.
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 999999999998887754211 1235677889999996443
No 203
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.97 E-value=0.0095 Score=56.43 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCC-----------------CCCEEEEEEecCC--
Q 038480 134 GLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPN-----------------DFDVVIWVVVSKD-- 193 (850)
Q Consensus 134 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~s~~-- 193 (850)
|-++..+.+.+.+..++.+ .+.++|..|+||+|+|..+.+....... ...-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567777888888776655 6799999999999999998887521111 1112333332221
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchhH-
Q 038480 194 -MQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVDV- 269 (850)
Q Consensus 194 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~v- 269 (850)
..++++. ++...+... -..++.-++|+||++.. .....+...+-....++.+|++|++.+-
T Consensus 81 ~i~i~~ir-~i~~~~~~~--------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLS--------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS---------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred hhhHHHHH-HHHHHHHHH--------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 2222222 222222210 01245668999999753 3444444434333457888888776543
Q ss_pred hhhccC-cceEeccCCC
Q 038480 270 CSLMGA-QKKFKIECLR 285 (850)
Q Consensus 270 ~~~~~~-~~~~~l~~L~ 285 (850)
.....+ ...+++.+++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 332222 2456666553
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.037 Score=58.27 Aligned_cols=163 Identities=10% Similarity=0.065 Sum_probs=93.4
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccC------------------CCCCCEEEEEEecCCCCHHH
Q 038480 138 TLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDT------------------PNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 138 ~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~~s~~~~~~~ 198 (850)
..+.+.+.+..+++ ..+.++|+.|+||+++|+.+.....-. ..|.|. .|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC-----
Confidence 44556666655543 478899999999999999987765210 112221 12211000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhHh
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDVC 270 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 270 (850)
......++.. .+.+.+ .+++-++|+|+++.. .....+...+-....++.+|++|.+ ..+.
T Consensus 85 -----------~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 85 -----------GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred -----------CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 0011223322 222332 345568999999743 3344443333333345556655554 4454
Q ss_pred hhccC-cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 271 SLMGA-QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 271 ~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..+.+ ...+.+.+++.+++.+.+.... . + .+..+++.++|.|+.+..+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~---~---~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG---I---T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC---C---c-----hHHHHHHHcCCCHHHHHHH
Confidence 44333 3578999999999998886531 1 1 1456789999999987654
No 205
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.012 Score=65.61 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=92.3
Q ss_pred cchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHH
Q 038480 133 VGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERI 199 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 199 (850)
=|.|+-+.++-+.+.- ...+-|..+|++|+|||++|+.+++.. ...| ++++.+ ++
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL 504 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----EL 504 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HH
Confidence 3577666666555431 356678899999999999999999986 4455 333322 11
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------cccccccCCCCCCC-eEEEE-ec
Q 038480 200 QEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVPFPTSENA-SKVVF-TT 264 (850)
Q Consensus 200 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~g-s~iiv-Tt 264 (850)
+.. +-+.++..+.+.+.+.-+--+.++.||.++.... +..+..-+...... ..+|| .|
T Consensus 505 ~sk-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 505 FSK-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred HHH-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 111 1233444444444444456789999999974211 11111112111222 22333 33
Q ss_pred -CchhH-hhhcc---CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHH
Q 038480 265 -RLVDV-CSLMG---AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLA 312 (850)
Q Consensus 265 -R~~~v-~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 312 (850)
|...+ ...+. -+..+.+..-+.+.-.++|+.++.+......-++++++
T Consensus 578 NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 578 NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 43333 12233 45678888888888889999999777655454555444
No 206
>PRK08181 transposase; Validated
Probab=96.90 E-value=0.0015 Score=67.07 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 038480 144 RCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIF 223 (850)
Q Consensus 144 ~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~ 223 (850)
+|+. ...-+.++|++|+|||.||..+.+... .....++|++ ..++...+..... ..+.... .
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~---~~~~~~~----l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR---ELQLESA----I 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh---CCcHHHH----H
Confidence 4554 335689999999999999999998762 2233456664 3445555543321 1122222 2
Q ss_pred HHhccCcEEEEEcccC
Q 038480 224 KILSKKKFLLLLDDVW 239 (850)
Q Consensus 224 ~~l~~k~~LlVlDdv~ 239 (850)
+.+. +.=|||+||+.
T Consensus 163 ~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 163 AKLD-KFDLLILDDLA 177 (269)
T ss_pred HHHh-cCCEEEEeccc
Confidence 2222 34499999995
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.90 E-value=0.018 Score=68.92 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=94.7
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 357888887777665531 123457899999999999999999986 3333 222211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc--------------cccccccCCC--CCCCeEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID--------------LVKVGVPFPT--SENASKVV 261 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~--~~~gs~ii 261 (850)
++ ... +...+...+...+...-+..+.+|++|+++.... ...+...+.. ...+.-||
T Consensus 522 ~l----~~~---~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 522 EI----LSK---WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred HH----hhc---ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 11 111 1122222222222333346789999999963210 0111111111 12344455
Q ss_pred EecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 262 FTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 262 vTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||...+.... + .-+..+.+...+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 57755554321 1 2346788999999999999987764433222222 466777787754
No 208
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.01 Score=68.10 Aligned_cols=173 Identities=17% Similarity=0.191 Sum_probs=102.4
Q ss_pred cccchhHHHH---HHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLD---KVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~---~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
++.|.|+.++ ++++.|.++ -++=+.++|++|+|||-||++++... .+ =|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV-------PF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV-------PFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC-------ceeeechH-----
Confidence 3567776554 455666542 24458899999999999999999886 22 23445443
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCccc-----------------cccccccCCCCCCCe--
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERID-----------------LVKVGVPFPTSENAS-- 258 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~~gs-- 258 (850)
+.++.+...+ ..+.+.+...- ++.+.++.+|+++.... +..+..-+.....+.
T Consensus 379 ---EFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 ---EFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred ---HHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 2333332211 22333333322 46788999999863211 122221222222222
Q ss_pred EEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 259 KVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 259 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
-++-+|...++.+. + .-++.+.++.-+..+..++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 23336666666332 1 234688999999999999999998655422 34455666 899998888664
No 209
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.86 E-value=0.01 Score=66.34 Aligned_cols=172 Identities=15% Similarity=0.079 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHHhc---c-------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 131 TIVGLESTLDKVWRCFE---E-------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~---~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
.+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. ...| +-+.++ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 46787777666654321 1 234568899999999999999999986 2222 122211 111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----c----------ccccccCCCCCCCeEEEEecCc
Q 038480 201 EKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----L----------VKVGVPFPTSENASKVVFTTRL 266 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~----------~~~~~~l~~~~~gs~iivTtR~ 266 (850)
. ...+.+...+...+...-...+.+|++|+++.... . ..+...+.....+.-||.||.+
T Consensus 297 ~-------~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~ 369 (489)
T CHL00195 297 G-------GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN 369 (489)
T ss_pred c-------cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 1 00111122222222222235789999999973210 0 0011111122233445557755
Q ss_pred hhHh-----hhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 267 VDVC-----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 267 ~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.+.. ..-.-+..+.++..+.++-.++|+.+.......... ......+++.+.|.-
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 4431 111234678899999999999999887553211111 112456777776654
No 210
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.0073 Score=72.91 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEE-------V--QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888887752 1 23478899999999999999998765
No 211
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0041 Score=62.08 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh-----cC---CCCCCHHH---H
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI-----GS---FGNKSLEE---K 218 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~---~~~~~~~~---~ 218 (850)
.-.++.|+|.+|+|||+++.+++... ......++|++... ++...+.+. ++.. .. ....+..+ .
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 35689999999999999999998776 23356889999876 665555443 2221 11 11122222 2
Q ss_pred HHHHHHHhcc-CcEEEEEcccC
Q 038480 219 ASDIFKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 219 ~~~l~~~l~~-k~~LlVlDdv~ 239 (850)
...+.+.+.. +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4444444443 45578888873
No 212
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.012 Score=65.21 Aligned_cols=184 Identities=14% Similarity=0.173 Sum_probs=109.6
Q ss_pred cccchhHHHHHHHHHhccCCce-EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH--h
Q 038480 131 TIVGLESTLDKVWRCFEEVQVG-IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER--I 207 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~--l 207 (850)
.+||-+..+..+...+..++.. .-...|+-|+||||+|+.++.... +.+- ....+++....-++|... +
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN--C~~~------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN--CENG------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc--CCCC------CCCCcchhhhhhHhhhcCCcc
Confidence 4699999999999999876533 456799999999999999988761 1110 111111222222222221 0
Q ss_pred c---C--CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccC--CccccccccccCCCCCCCeEEEEecCc-hhHh-hhc
Q 038480 208 G---S--FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVW--ERIDLVKVGVPFPTSENASKVVFTTRL-VDVC-SLM 273 (850)
Q Consensus 208 ~---~--~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~-~~~ 273 (850)
. . ......++ .+.|.+.. ++|.=+.|+|+|. +...|..+..-+-......+.|+.|++ ..+. ...
T Consensus 89 DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 89 DVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred cchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 0 0 01112222 22233322 3455589999997 445677665555433445556655554 3332 223
Q ss_pred cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 274 GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
.....|.++.++.++-...+...+....+..+ ++....|++..+|...-.
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLRDA 217 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChhhH
Confidence 34468999999999999999998876654333 445677888888765433
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.82 E-value=0.013 Score=70.18 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=92.7
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.+..++++.+.+.- ...+-|.++|++|+|||+||+.+++.. ...| +.+..+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~----- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPE----- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHH-----
Confidence 367999998888776631 133568899999999999999999876 2222 2232211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--------c-----cccccccCCC-CCCCeEEEE-
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--------D-----LVKVGVPFPT-SENASKVVF- 262 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~-~~~gs~iiv- 262 (850)
+. ... .......+...+.....+.+.+|++|+++... . ...+...+.. ...+..++|
T Consensus 248 -i~----~~~---~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 248 -IM----SKY---YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred -Hh----ccc---ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 11 000 01111222223333345667899999986321 0 1111111111 122333444
Q ss_pred ecCchh-Hhhhc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchH
Q 038480 263 TTRLVD-VCSLM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLA 325 (850)
Q Consensus 263 TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 325 (850)
||...+ +...+ .-...+.+...+.++-.++++..........+. ....+++.+.|..-+
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCHH
Confidence 454332 21111 123567888888888888888665433211111 256788888886543
No 214
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.80 E-value=0.0061 Score=61.61 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH--------hcCCCCCCHHH---H
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER--------IGSFGNKSLEE---K 218 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~--------l~~~~~~~~~~---~ 218 (850)
.-.++.|+|.+|+|||++|.+++.... .....++|++.. .++...+. +++.. +......+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 356999999999999999999988762 234678999887 55554443 23222 11112222222 2
Q ss_pred HHHHHHHhccCcEEEEEccc
Q 038480 219 ASDIFKILSKKKFLLLLDDV 238 (850)
Q Consensus 219 ~~~l~~~l~~k~~LlVlDdv 238 (850)
...+.+.++.+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 23333344456667888887
No 215
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.01 Score=63.00 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred HHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCE-EEEEEecC-CCCHHHHHHHHHHHhcCCC--C
Q 038480 138 TLDKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDV-VIWVVVSK-DMQLERIQEKIGERIGSFG--N 212 (850)
Q Consensus 138 ~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~ 212 (850)
...++++.+.. ++-.-+.|+|..|+|||||++.+.+... ..+-+. ++|+.+.+ ..++.++.+.+...+.... .
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34457777764 3445679999999999999999998762 223344 46777765 4578888888877666511 1
Q ss_pred CCHH--H---HHHHHHHHh--ccCcEEEEEcccC
Q 038480 213 KSLE--E---KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 213 ~~~~--~---~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.... . ....+.+++ ++++.+||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 1 111222222 5899999999994
No 216
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.78 E-value=0.0025 Score=76.52 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=38.5
Q ss_pred CCcccchhHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 129 EPTIVGLESTLDKVWRCFEE---------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 134578999999999999999998775
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.78 E-value=0.0073 Score=61.14 Aligned_cols=74 Identities=27% Similarity=0.320 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
+...+.++|..|+|||+||..+++... .....++++++ .+++..+-..... ..... .+.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~--~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN--GQSGE----KFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc--cchHH----HHHHHh-cC
Confidence 346789999999999999999999972 22334566654 3455555443321 11111 222333 34
Q ss_pred cEEEEEcccC
Q 038480 230 KFLLLLDDVW 239 (850)
Q Consensus 230 ~~LlVlDdv~ 239 (850)
-=||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 5589999994
No 218
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.77 E-value=0.011 Score=57.98 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=97.8
Q ss_pred cccchhHHHHH---HHHHhccC------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHH
Q 038480 131 TIVGLESTLDK---VWRCFEEV------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQE 201 (850)
Q Consensus 131 ~~vgr~~~~~~---l~~~l~~~------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 201 (850)
.++|.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+.+.+.. +-.| +.+. ..+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk-------at~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK-------ATE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec-------hHH
Confidence 46888876655 67777652 46789999999999999999999986 2233 1111 111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCc----------cccc----cccccCC--CCCCCeEEEEec
Q 038480 202 KIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWER----------IDLV----KVGVPFP--TSENASKVVFTT 264 (850)
Q Consensus 202 ~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~----~~~~~l~--~~~~gs~iivTt 264 (850)
-|.+..| +....+..+.+.- +.-++++.+|.++-. .+.. ++..-+. ..+.|...|-.|
T Consensus 187 liGehVG-----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaT 261 (368)
T COG1223 187 LIGEHVG-----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAAT 261 (368)
T ss_pred HHHHHhh-----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeec
Confidence 2222222 1122223333322 346899999998632 1111 1211121 123466566666
Q ss_pred CchhHhhhc-c--CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC
Q 038480 265 RLVDVCSLM-G--AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 265 R~~~v~~~~-~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 322 (850)
.+.+..... . -...|+..-.+++|-.+++...+..-....... .+.++++.+|.
T Consensus 262 N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 262 NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 666664322 1 124677777888999999998886544333322 46677777764
No 219
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.062 Score=60.41 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=90.0
Q ss_pred cccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
.-+|.++-+++|++.+.- -+-++++.+|++|||||++|+.++.-. ...| +-++|..-.|..+|-..=-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhcccce
Confidence 348999999999998852 255799999999999999999999886 2333 2355666555554422111
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhc---cCcEEEEEcccCCcc---------cccccccc-----C----CC-CCCCeEEEE
Q 038480 205 ERIGSFGNKSLEEKASDIFKILS---KKKFLLLLDDVWERI---------DLVKVGVP-----F----PT-SENASKVVF 262 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~---------~~~~~~~~-----l----~~-~~~gs~iiv 262 (850)
.-....-.++.+.|+ ...=|+.+|.|+... .+-++..| | .+ .-.=|||++
T Consensus 486 --------TYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 486 --------TYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred --------eeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 111122234444443 345588999997421 11111111 1 01 012366664
Q ss_pred -ecCchhH----hhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 263 -TTRLVDV----CSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 263 -TtR~~~v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
.|-+ .+ ....+....|.|.+...+|-.++-.++.
T Consensus 558 icTAN-~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTAN-VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEecc-ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3321 11 1122334678999999999888877765
No 220
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.0003 Score=80.48 Aligned_cols=62 Identities=27% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCCccceeeccccc-CCCC-chhhhcCCCcceEEEccCC-CCCcccC----hhhccccCCCeEeecccc
Q 038480 505 TCPHLVTLFLAINK-LDTI-TSNFFDFMPSLRVLNLSKN-LSLKQLP----SEISKLVSLQYLNLSETS 566 (850)
Q Consensus 505 ~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~~-~~i~~lp----~~i~~l~~L~~L~Ls~~~ 566 (850)
.++.|+.|.+..+. +... ...+...+++|+.|+++++ ..+...+ .....+.+|+.|+++++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 36667777766654 2221 1233556777777777662 1222222 122335666666666664
No 221
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.014 Score=64.02 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
..-|.+||++|+|||-||++|+|.. +..| ++|..+ +++..- -+.++......+++.-..-+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-------VGESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-------VGESERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-------hhhHHHHHHHHHHHhhcCCC
Confidence 4457899999999999999999987 4455 444443 122221 12333333333444445679
Q ss_pred EEEEEcccCCc-------ccc------ccccccCC--CCCCCeEEEEecCchhHhh--hc---cCcceEeccCCChhhHH
Q 038480 231 FLLLLDDVWER-------IDL------VKVGVPFP--TSENASKVVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAW 290 (850)
Q Consensus 231 ~LlVlDdv~~~-------~~~------~~~~~~l~--~~~~gs~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~ 290 (850)
++|+||.++.. ..| ..+..-+. ....|.-||-.|..+++.. .+ .-+....++.-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999999732 111 11111121 1234566666666566632 12 23467788888999999
Q ss_pred HHHHHHhC--CCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 291 ELFLEKVG--EEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 291 ~lf~~~~~--~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
++++.... +.....+-++.++|+. .+|.|..
T Consensus 686 ~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 686 AILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999887 3333344455555442 3455654
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.72 E-value=0.061 Score=60.48 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=120.0
Q ss_pred CcccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhc-----cCCCCCCEEEEEEecCCCCHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFI-----DTPNDFDVVIWVVVSKDMQLERI 199 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~-----~~~~~f~~~~wv~~s~~~~~~~~ 199 (850)
..+-+||.+..+|-+.+.. +..+.+.|.|.+|+|||..+..|.+... .....|+ .+.|..-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999999888753 2344899999999999999999998541 1223454 234444445568999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhc-----cCcEEEEEcccCCc-----cccccccccCCCCCCCeEEEEecC--ch
Q 038480 200 QEKIGERIGSFGNKSLEEKASDIFKILS-----KKKFLLLLDDVWER-----IDLVKVGVPFPTSENASKVVFTTR--LV 267 (850)
Q Consensus 200 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTtR--~~ 267 (850)
+..|...+.. .........+.+..++. .+..+|++|+++.. +.+..+... ...+++|++|-+= ..
T Consensus 475 Y~~I~~~lsg-~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--pt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSG-ERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--PTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhccc-CcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC--CcCCCCceEEEEecccc
Confidence 9999999986 23344445555555553 45789999998532 112222111 1234666655321 11
Q ss_pred hH---------hhhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhh
Q 038480 268 DV---------CSLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRA 332 (850)
Q Consensus 268 ~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 332 (850)
+. ++.+ ....+...+.+.++-.++......+...-.....+=++++|+...|..-.|+...-++
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 1111 1256788888888888888776644332222334445666666666655555544443
No 223
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.0049 Score=64.61 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-+++-|+|++|+||||||.+++-.. ...-..++||+..+.++.. .++.++. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45688999999999999999988775 2334568899988776653 3344433 3344556666666
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 65554 355699999984
No 224
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.71 E-value=0.005 Score=64.49 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-+++-|+|++|+||||||.++.... ...-..++||+..+.++.. .+++++. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988776 2234567899887766653 3444443 3344556666666
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
...++ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 456699999984
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.70 E-value=0.0037 Score=64.41 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=73.0
Q ss_pred chhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE----EecCC---------CCHHHHH
Q 038480 134 GLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV----VVSKD---------MQLERIQ 200 (850)
Q Consensus 134 gr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv----~~s~~---------~~~~~~~ 200 (850)
+|..+..-.+++|.++++..|.+.|.+|.|||.||-+..=...-.++.|..++-. .+.++ ..+.-..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 4666777778899999999999999999999999876543321234445433322 12222 1122233
Q ss_pred HHHHHHhcC---CCCCCHHHHHHHH----------HHHhccCc---EEEEEcccCCccccccccccCCCCCCCeEEEEec
Q 038480 201 EKIGERIGS---FGNKSLEEKASDI----------FKILSKKK---FLLLLDDVWERIDLVKVGVPFPTSENASKVVFTT 264 (850)
Q Consensus 201 ~~i~~~l~~---~~~~~~~~~~~~l----------~~~l~~k~---~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTt 264 (850)
+.|..-+.. ..... +...+.+ ..+++|+. -++|+|.+.+... ..+...+...+.||||+.|-
T Consensus 308 q~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~g 385 (436)
T COG1875 308 QAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEEcC
Confidence 333333222 11111 2222222 12334543 5899999965421 12222244567899999886
Q ss_pred Cc
Q 038480 265 RL 266 (850)
Q Consensus 265 R~ 266 (850)
--
T Consensus 386 d~ 387 (436)
T COG1875 386 DP 387 (436)
T ss_pred CH
Confidence 63
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.038 Score=58.58 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVV 190 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 190 (850)
...+.++|..|+|||.||..+++... .. -..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~-g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DR-GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HC-CCeEEEEEH
Confidence 36799999999999999999999872 22 235666654
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.083 Score=56.24 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=56.6
Q ss_pred cCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEec-CchhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCC
Q 038480 228 KKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT-RLVDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLV 303 (850)
Q Consensus 228 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 303 (850)
+++-++|+|+++.. .....+...+-....++.+|++| +-..+...+. -...+.+.+++.++..+.+... + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--C--
Confidence 45568999999743 34444444443334455555554 4454543332 2368899999999999888764 1 1
Q ss_pred CCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 304 SHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 304 ~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
+. ...++..++|.|..+..+.
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 2345788999997665443
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0015 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 229
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.67 E-value=0.011 Score=59.70 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhcC-----------CCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIGS-----------FGNKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~~ 214 (850)
.-.++.|+|.+|+|||++|.+++.... ... .=..++|++....++...+.+ +.+..+. ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCC
Confidence 456999999999999999999987651 111 115679999888777655443 3333211 22234
Q ss_pred HHHHHHHHHHHhc----cCcEEEEEcccC
Q 038480 215 LEEKASDIFKILS----KKKFLLLLDDVW 239 (850)
Q Consensus 215 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 239 (850)
.++....+.+..+ .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5555555555443 344588999884
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.66 E-value=0.006 Score=64.48 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-+++-|+|++|+||||||.+++... ...-..++||+..+.++.. .+++++. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988776 2334678999988887753 3444443 3344556666666
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
...++ ++.-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 66554 356699999984
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.66 E-value=0.0051 Score=64.62 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 134 GLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 134 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
++....+...+++.. ....-+.++|..|+|||.||..+++... ...+ .+.++++ ..++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555556543 1345799999999999999999999982 2233 3556654 3455555554431
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccCC--cccccc--ccccC-CCC-CCCeEEEEecC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVWE--RIDLVK--VGVPF-PTS-ENASKVVFTTR 265 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~~l-~~~-~~gs~iivTtR 265 (850)
.+..+ ..+.++ +-=||||||+.. ...|.. +...+ ... ..+-.+|+||.
T Consensus 206 ---~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ---GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 12222 222233 345889999953 334542 32222 111 13445777776
No 232
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00012 Score=71.80 Aligned_cols=59 Identities=31% Similarity=0.373 Sum_probs=29.3
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccc
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKEL 570 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~L 570 (850)
+.+.|++.+|.++++. +...|+.|++|.||-| .|..+. .+..|++|+.|.|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccH
Confidence 3444455555544432 2445555555555555 554443 244555555555555554433
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.0033 Score=64.53 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
...+.|+|++|+|||+||..+++.. . ... ..+.++. ..++...+...... .. ....+.+. -.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a-~-~~G-~~v~~~~------~~~l~~~l~~a~~~---~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA-V-RAG-IKVRFTT------AADLLLQLSTAQRQ---GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH-H-HcC-CeEEEEe------HHHHHHHHHHHHHC---Cc---HHHHHHHH-hcCC
Confidence 3568899999999999999998775 1 122 2334443 23344443322211 11 11222222 2345
Q ss_pred EEEEEcccCC
Q 038480 231 FLLLLDDVWE 240 (850)
Q Consensus 231 ~LlVlDdv~~ 240 (850)
-++|+||+..
T Consensus 166 dlLiiDdlg~ 175 (259)
T PRK09183 166 RLLIIDEIGY 175 (259)
T ss_pred CEEEEccccc
Confidence 6999999963
No 234
>PRK06526 transposase; Provisional
Probab=96.63 E-value=0.0021 Score=65.50 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
..-+.++|++|+|||+||..+..... ...+ .+.|+ +..++...+..... ... ....+.. + .+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~-~v~f~------t~~~l~~~l~~~~~---~~~---~~~~l~~-l-~~~ 160 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGH-RVLFA------TAAQWVARLAAAHH---AGR---LQAELVK-L-GRY 160 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCC-chhhh------hHHHHHHHHHHHHh---cCc---HHHHHHH-h-ccC
Confidence 45689999999999999999988762 2222 23343 33445555443221 111 1122222 2 234
Q ss_pred EEEEEcccCC
Q 038480 231 FLLLLDDVWE 240 (850)
Q Consensus 231 ~LlVlDdv~~ 240 (850)
-+||+||+..
T Consensus 161 dlLIIDD~g~ 170 (254)
T PRK06526 161 PLLIVDEVGY 170 (254)
T ss_pred CEEEEccccc
Confidence 5899999963
No 235
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.073 Score=56.76 Aligned_cols=165 Identities=10% Similarity=0.052 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHHhhccC-------------------CCCCCEEEEEEecCCCCHH
Q 038480 138 TLDKVWRCFEEVQ-VGIIGLYGMGGVGKTTLLTQINNKFIDT-------------------PNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 138 ~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~~f~~~~wv~~s~~~~~~ 197 (850)
.-+++.+.+..++ ...+.++|+.|+||+++|..++....-. ..|-|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 3456677776654 4467799999999999999887765200 012221 11110000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhH
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDV 269 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v 269 (850)
......++..+ +.+.+ .+++-++|+|+++.. ..-..+...+-....++.+|++|.+ ..+
T Consensus 85 ------------~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 85 ------------KSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL 151 (334)
T ss_pred ------------cccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00122233222 22322 356679999999743 3333343333223345666666554 445
Q ss_pred hhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 270 CSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 270 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
...+. -...+.+.+++.+++...+.+..+ .+ .+.+..++..++|.|..+..
T Consensus 152 LpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 152 LATLRSRCRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hHHHHhccccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 43333 235789999999999887765321 11 23367889999999975543
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.60 E-value=0.01 Score=60.50 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~ 200 (850)
.-.++.|+|.+|+|||++|.+++-.. .... ....++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 44689999999999999999997553 1122 13678999988877765443
No 237
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.60 E-value=0.0027 Score=66.94 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999864 245789999999999999999999887
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.015 Score=58.72 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=51.4
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCH
Q 038480 138 TLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSL 215 (850)
Q Consensus 138 ~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 215 (850)
.+..+.+...+ .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-..... ...+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-~~~~- 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-SETS- 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-cccc-
Confidence 34444444432 2335789999999999999999999872 2234556663 34555555443321 1112
Q ss_pred HHHHHHHHHHhccCcEEEEEcccCC
Q 038480 216 EEKASDIFKILSKKKFLLLLDDVWE 240 (850)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (850)
...+.+.+.+ .=+||+||+..
T Consensus 153 ---~~~~l~~l~~-~dlLvIDDig~ 173 (244)
T PRK07952 153 ---EEQLLNDLSN-VDLLVIDEIGV 173 (244)
T ss_pred ---HHHHHHHhcc-CCEEEEeCCCC
Confidence 2233344553 44788899953
No 239
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0059 Score=61.75 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCC--CCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTP--NDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSK 228 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 228 (850)
-++|.++|++|.|||+|.+.+++.. .++ +.+....-+.++.. .++.+.... .+.-...+..+|.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE----SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE----SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh----hhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999987 332 33433344444332 222222211 223445566777777776
Q ss_pred Cc--EEEEEcccCC
Q 038480 229 KK--FLLLLDDVWE 240 (850)
Q Consensus 229 k~--~LlVlDdv~~ 240 (850)
+. +.+.+|.|.+
T Consensus 248 ~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 RGNLVFVLIDEVES 261 (423)
T ss_pred CCcEEEEEeHHHHH
Confidence 55 4667899974
No 240
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.56 E-value=0.0074 Score=72.00 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=60.2
Q ss_pred CcccchhHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------V--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++... +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhccc--
Confidence 4578999888888887752 1 23468899999999999999998875 12345555554322111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCcE-EEEEcccCC
Q 038480 201 EKIGERIGSFGNKSLEEKASDIFKILSKKKF-LLLLDDVWE 240 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 240 (850)
+...++.....-..+....+.+.++.+++ +++||+++.
T Consensus 526 --~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred --HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhh
Confidence 12222221110000112234455555555 999999974
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.56 E-value=0.04 Score=65.20 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=92.3
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEccc
Q 038480 159 MGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDV 238 (850)
Q Consensus 159 ~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 238 (850)
+.++||||+|..++++. -....-..++-+++|.......+. ++++.+...... -..+.-++|+|++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~------------~~~~~KVvIIDEa 639 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPI------------GGASFKIIFLDEA 639 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc------------CCCCCEEEEEECc
Confidence 77899999999999986 111111346777777655555433 333332210000 0124579999999
Q ss_pred CCc--cccccccccCCCCCCCeEEEEecCc-hhHhhhcc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHH
Q 038480 239 WER--IDLVKVGVPFPTSENASKVVFTTRL-VDVCSLMG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQA 314 (850)
Q Consensus 239 ~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 314 (850)
+.. .....+...+-.....+++|.+|.+ ..+...+. ....+++.+++.++-...+...+.......+ ++....
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~ 716 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQA 716 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHH
Confidence 854 3444444333322345566655543 34433332 2468999999999999888877654332222 456789
Q ss_pred HHHHcCCCchHHHHH
Q 038480 315 MAKECAGLPLALITI 329 (850)
Q Consensus 315 i~~~~~G~Plai~~~ 329 (850)
|++.++|.+..+..+
T Consensus 717 Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 717 ILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999988555433
No 242
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.53 E-value=0.0063 Score=73.74 Aligned_cols=103 Identities=23% Similarity=0.397 Sum_probs=60.6
Q ss_pred CcccchhHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.++++.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhhcccchH-
Confidence 45899999999998888531 24578899999999999999999875 222233455555543221111
Q ss_pred HHHHHHhcCC-CCCCHHHHHHHHHHHhccCcE-EEEEcccCC
Q 038480 201 EKIGERIGSF-GNKSLEEKASDIFKILSKKKF-LLLLDDVWE 240 (850)
Q Consensus 201 ~~i~~~l~~~-~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 240 (850)
..-++.. +....++ ...+.+.++.+++ +|+||++..
T Consensus 641 ---~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeiek 678 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEK 678 (852)
T ss_pred ---HHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEecccc
Confidence 1112221 1001110 1223444444444 999999974
No 243
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.52 E-value=0.014 Score=59.82 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhc---cCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFI---DTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
-.+.=|+|.+|+|||.|+.+++-... ...+.=..++||+....|...++. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 45888999999999999988865431 111223579999999999987775 4565543
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.52 E-value=0.0062 Score=71.76 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=59.7
Q ss_pred CcccchhHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.++.++.|.+.+.. .....+.++|+.|+|||++|+.++... ... .+.++++.-.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~---~i~id~se~~~~~--- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIE---LLRFDMSEYMERH--- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCC---cEEeechhhcccc---
Confidence 3578999999988888752 124578899999999999999998876 222 3444544332211
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCc-EEEEEcccCCc
Q 038480 201 EKIGERIGSFGNKSLEEKASDIFKILSKKK-FLLLLDDVWER 241 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~ 241 (850)
.+.+-++........+....+.+.++.++ -+|+||+++..
T Consensus 529 -~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 -TVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred -cHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 12222222111000011123444444444 59999999743
No 245
>PRK06762 hypothetical protein; Provisional
Probab=96.47 E-value=0.029 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.021 Score=57.31 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ 195 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 195 (850)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45689999999999999999998876 22344678887765543
No 247
>PRK06696 uridine kinase; Validated
Probab=96.35 E-value=0.0055 Score=61.72 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 134 GLESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 134 gr~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|++-+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777788777753 467799999999999999999999886
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.35 E-value=0.019 Score=54.50 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=31.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ 195 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 195 (850)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999999887 22445678888766543
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.31 E-value=0.031 Score=65.43 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=80.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEE
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFL 232 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 232 (850)
-|.++|++|+|||++|+.+.+.. ...| +.++.+. +.. ... ..........+...-...+.+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~~~----~~~---g~~~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------FVE----MFV---GVGASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------hHH----hhh---cccHHHHHHHHHHHHhcCCcE
Confidence 48899999999999999999876 2233 2222221 111 110 112222233333333457899
Q ss_pred EEEcccCCccc----------------cccccccCCC--CCCCeEEEEecCchhHhhhc-----cCcceEeccCCChhhH
Q 038480 233 LLLDDVWERID----------------LVKVGVPFPT--SENASKVVFTTRLVDVCSLM-----GAQKKFKIECLRDKEA 289 (850)
Q Consensus 233 lVlDdv~~~~~----------------~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~ 289 (850)
|++|+++.... ...+...+.. ...+.-||.||...+..... .-++.+.+...+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 99999964310 1111111111 12344455577666543221 1346788888898888
Q ss_pred HHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC
Q 038480 290 WELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 290 ~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 322 (850)
.++++.+........+.+ ...+++.+.|.
T Consensus 328 ~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 328 EQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 899988875543222222 23466666653
No 250
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00026 Score=69.65 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=33.9
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh--hhccccCCCeEeecc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS--EISKLVSLQYLNLSE 564 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~--~i~~l~~L~~L~Ls~ 564 (850)
++.|+..++.+.++.-...++.|++|.|+-|.++.+.+ |..|++|+.|.|..| .|.++.+ -+.++++|+.|.|..
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 34444444444444333444444444444444444333 444444444444444 4433322 223444455555544
Q ss_pred c
Q 038480 565 T 565 (850)
Q Consensus 565 ~ 565 (850)
|
T Consensus 98 N 98 (388)
T KOG2123|consen 98 N 98 (388)
T ss_pred C
Confidence 4
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.30 E-value=0.012 Score=71.20 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=60.4
Q ss_pred CcccchhHHHHHHHHHhcc-------C--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------V--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+.+.. -..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHH
Confidence 5689999999999888752 1 23456789999999999999999875 1111233444444432222111
Q ss_pred HHHHHHhcCC-CCCCHHHHHHHHHHHhccCcE-EEEEcccCC
Q 038480 201 EKIGERIGSF-GNKSLEEKASDIFKILSKKKF-LLLLDDVWE 240 (850)
Q Consensus 201 ~~i~~~l~~~-~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 240 (850)
+ -++.. +....+ ....+.+.++.++| +++||+++.
T Consensus 586 ~----l~g~~~gyvg~~-~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 586 K----LIGSPPGYVGYN-EGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred H----hcCCCCcccCcC-ccchHHHHHHhCCCeEEEECChhh
Confidence 1 12211 000011 11234556666665 889999974
No 252
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.30 E-value=0.047 Score=55.93 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=97.5
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH-HHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL-ERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~ 204 (850)
..++|-.++...+-+++.. ++..-+.|+|+.|.|||+|.-.+..+. +..-+..+-|........ .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3578988888888888864 456678899999999999998888774 233334455555554333 22455555
Q ss_pred HHhcC------CCCCCHHHHHHHHHHHhcc------CcEEEEEcccCCcc------ccccccccC-CCCCCCeEEEEecC
Q 038480 205 ERIGS------FGNKSLEEKASDIFKILSK------KKFLLLLDDVWERI------DLVKVGVPF-PTSENASKVVFTTR 265 (850)
Q Consensus 205 ~~l~~------~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~------~~~~~~~~l-~~~~~gs~iivTtR 265 (850)
.++.. ...-+..+..+++.+.|+. -+++.|+|.++--. -+..+...- ....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55433 1122334455666666643 35888888885321 111111111 12334566678998
Q ss_pred chhH-------hhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 266 LVDV-------CSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 266 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
-.-. -+.+....++-+..++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5322 1222223355567777888888887765
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.28 E-value=0.17 Score=55.26 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.++|..|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988766
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.26 E-value=0.0016 Score=62.60 Aligned_cols=74 Identities=30% Similarity=0.376 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
...-+.++|..|+|||.||..+.+.... .-..+.|+. ..+++..+-..- ......+ +.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~~---~~~~~~~----~~~~l~~- 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQSR---SDGSYEE----LLKRLKR- 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCCH---CCTTHCH----HHHHHHT-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceeccccccc---cccchhh----hcCcccc-
Confidence 3457999999999999999999988732 223456664 344555543221 1112222 2333333
Q ss_pred cEEEEEcccCC
Q 038480 230 KFLLLLDDVWE 240 (850)
Q Consensus 230 ~~LlVlDdv~~ 240 (850)
-=||||||+-.
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 34778999953
No 255
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.014 Score=56.79 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.023 Score=58.01 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKK 229 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 229 (850)
+..-+.++|.+|+|||.||.++.++. - ..--.+.+++ ..++..++...... .....++.+.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~--~~g~sv~f~~------~~el~~~Lk~~~~~------~~~~~~l~~~l~~- 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L--KAGISVLFIT------APDLLSKLKAAFDE------GRLEEKLLRELKK- 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEEE------HHHHHHHHHHHHhc------CchHHHHHHHhhc-
Confidence 56678999999999999999999998 2 2233455664 34555565554432 1122223332222
Q ss_pred cEEEEEcccC
Q 038480 230 KFLLLLDDVW 239 (850)
Q Consensus 230 ~~LlVlDdv~ 239 (850)
-=||||||+-
T Consensus 168 ~dlLIiDDlG 177 (254)
T COG1484 168 VDLLIIDDIG 177 (254)
T ss_pred CCEEEEeccc
Confidence 2388999995
No 257
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.23 E-value=0.03 Score=63.07 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=41.5
Q ss_pred ccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE
Q 038480 132 IVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV 189 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 189 (850)
++--.+.++++.+||.+ ...+++.+.|++|+||||.++.+++.. .|+.+-|..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 44445677888888864 235699999999999999999999876 577777864
No 258
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.0017 Score=74.17 Aligned_cols=83 Identities=25% Similarity=0.258 Sum_probs=48.2
Q ss_pred ccceEEEeeccc-cccc--c-cCCCCCCccceeecccc-c-CCCCc---hhhhcCCCcceEEEccCCCCCccc-Chhhc-
Q 038480 484 WRDRRRISLLRN-KIVA--L-SETPTCPHLVTLFLAIN-K-LDTIT---SNFFDFMPSLRVLNLSKNLSLKQL-PSEIS- 552 (850)
Q Consensus 484 ~~~l~~L~l~~n-~~~~--l-~~~~~~~~L~~L~l~~n-~-l~~~~---~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~- 552 (850)
++.++++.+... .+.. + +....+++|+.|++.++ . ....+ ......+++|+.|+++++..++.. -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 456666666544 2222 2 33467888888888762 2 11111 223556788888888888434432 12232
Q ss_pred cccCCCeEeecccc
Q 038480 553 KLVSLQYLNLSETS 566 (850)
Q Consensus 553 ~l~~L~~L~Ls~~~ 566 (850)
.+++|++|.+.+|.
T Consensus 267 ~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 267 RCPNLETLSLSNCS 280 (482)
T ss_pred hCCCcceEccCCCC
Confidence 27788888877664
No 259
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.22 E-value=0.027 Score=59.42 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccC---CCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDT---PNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.-.++-|+|.+|+|||+|+.+++-..... ...-..++||+....++..++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 44688899999999999998876433110 11234789999999988887754 5565543
No 260
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.18 E-value=0.16 Score=54.59 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 136 ESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 136 ~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.-.+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566666664 457799999999999999999999987
No 261
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.0095 Score=57.53 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV 188 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (850)
...+|.+.|+.|+||||+|+.++... ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 44689999999999999999999987 3345445555
No 262
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.014 Score=53.21 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=34.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
+|.|-|.+|+||||+|+.+.++. .-.| .+...++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCC
Confidence 68999999999999999999987 1111 1345789999998876
No 263
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.16 E-value=0.031 Score=57.05 Aligned_cols=87 Identities=21% Similarity=0.337 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-CEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHH--
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-DVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEE-- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~-- 217 (850)
+-.-++|.|..|+|||||++.+++.. ..+| +.++++-+.+. ....++.+++.+.=.. ..+....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 2234 45666767654 3456666666543211 11111111
Q ss_pred ----HHHHHHHHh--c-cCcEEEEEcccC
Q 038480 218 ----KASDIFKIL--S-KKKFLLLLDDVW 239 (850)
Q Consensus 218 ----~~~~l~~~l--~-~k~~LlVlDdv~ 239 (850)
.+-.+.+++ + ++.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 112344555 3 889999999994
No 264
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.033 Score=59.87 Aligned_cols=141 Identities=10% Similarity=0.088 Sum_probs=78.8
Q ss_pred ccchhHHHHHHHHHhcc-CCceE-EEEEcCCCChHHHHHHHHHHhhccCCC------------------CCCEEEEEEec
Q 038480 132 IVGLESTLDKVWRCFEE-VQVGI-IGLYGMGGVGKTTLLTQINNKFIDTPN------------------DFDVVIWVVVS 191 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~-~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s 191 (850)
++|-+....++..+..+ ++.+- +.++|+.|+||||+|..+.+....... ..+-+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 46777778888888774 34444 999999999999999999988621100 12334444444
Q ss_pred CCCC---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc
Q 038480 192 KDMQ---LERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL 266 (850)
Q Consensus 192 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~ 266 (850)
.... ..+..+++.+....... .++.-++++|+++.. +.-..+...+-.....+.+|++|.+
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~--------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL--------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC--------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 4433 23333333333322100 356779999999753 2223333223233456677777663
Q ss_pred -hhHhhhccC-cceEeccCCCh
Q 038480 267 -VDVCSLMGA-QKKFKIECLRD 286 (850)
Q Consensus 267 -~~v~~~~~~-~~~~~l~~L~~ 286 (850)
..+...+.+ ...+++.+.+.
T Consensus 149 ~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 149 PSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred hhhccchhhhcceeeecCCchH
Confidence 333332222 24566666333
No 265
>PRK06921 hypothetical protein; Provisional
Probab=96.16 E-value=0.022 Score=58.68 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEe
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVV 190 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 190 (850)
....+.++|..|+|||+||..+++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999872 221344667654
No 266
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.15 E-value=0.0082 Score=62.89 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.....++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356689999999999999999999987
No 267
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.24 Score=56.46 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHHhcc---------C---CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDKVWRCFEE---------V---QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~---------~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
++=|.++.+.+|.+-+.- . +..=|.++|++|.|||-+|++|+... . .-|++|..+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----H
Confidence 455788888888877631 1 34568899999999999999999886 1 345555554 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCC
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWE 240 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (850)
++.. +-+.+++...+...+.-..++++|.||.+++
T Consensus 741 LLNM-------YVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNM-------YVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHH-------HhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2221 1233444444444445567999999999985
No 268
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.12 E-value=0.04 Score=54.73 Aligned_cols=208 Identities=10% Similarity=0.120 Sum_probs=115.5
Q ss_pred ccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhcc---CCCCCCEEEEEEecCC----------C----
Q 038480 132 IVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFID---TPNDFDVVIWVVVSKD----------M---- 194 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~---- 194 (850)
+.++++....+......++.+-..++|+.|.||-|.+..+.+..-. .+-.-+.+-|.+-|.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5677777777777776677889999999999999988777666411 1122334455443322 1
Q ss_pred -------CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcE-EEEEcccCCc--cccccccccCCCCCCCeEEEEec
Q 038480 195 -------QLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKF-LLLLDDVWER--IDLVKVGVPFPTSENASKVVFTT 264 (850)
Q Consensus 195 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTt 264 (850)
.-.-+.++|+++++.... . +.-..+.| ++|+-.+++. +.-.+++...-.-.+.+|+|+..
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q--i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c 164 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ--I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC 164 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc--h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe
Confidence 112233344443332000 0 01112345 5666666532 22222211111112345666532
Q ss_pred Cc-hhHhhhccC-cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCC------
Q 038480 265 RL-VDVCSLMGA-QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSK------ 336 (850)
Q Consensus 265 R~-~~v~~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~------ 336 (850)
.+ ..+.....+ .-.+++...+++|....+...+..+....+ .+++.+|+++++|.-.-...+...++-+
T Consensus 165 ns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 165 NSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred cCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 21 111111222 246899999999999999999877664433 6789999999998654333333333221
Q ss_pred ----CCHHHHHHHHHHHhhc
Q 038480 337 ----NTPEEWRYAIEMLRRS 352 (850)
Q Consensus 337 ----~~~~~w~~~l~~l~~~ 352 (850)
-...+|+-++.++.+.
T Consensus 242 ~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cCCCCCCccHHHHHHHHHHH
Confidence 1235799888877664
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.11 E-value=0.025 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++.++|++|+||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.007 Score=55.05 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=26.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIW 187 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 187 (850)
.-|+|.|++|+||||+++.+.+.. +. ..|...-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L-~~-~g~kvgGf 39 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL-RE-KGYKVGGF 39 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH-Hh-cCceeeeE
Confidence 468999999999999999999887 32 33554433
No 271
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.07 Score=57.85 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=34.9
Q ss_pred ccchhH---HHHHHHHHhccC--------C-ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 132 IVGLES---TLDKVWRCFEEV--------Q-VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 132 ~vgr~~---~~~~l~~~l~~~--------~-~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+-|.|+ ++++|++.|.+. + .+-|.++|++|.|||-||++|+...
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 456654 677788888762 2 3468899999999999999999886
No 272
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.09 E-value=0.07 Score=55.85 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS---FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~~l~~~l 226 (850)
.-+++-|+|..|+||||||..+.... ...-..++||+....++...+ ..+.-.+.. ......++....+.+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~a-~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEYA-ESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHHH-HHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhHH-HhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 34689999999999999999998876 233567899999888776322 222222211 23344556666666666
Q ss_pred ccCc-EEEEEcccCC
Q 038480 227 SKKK-FLLLLDDVWE 240 (850)
Q Consensus 227 ~~k~-~LlVlDdv~~ 240 (850)
+... -++|+|-|-.
T Consensus 128 rsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAA 142 (322)
T ss_dssp HTTSESEEEEE-CTT
T ss_pred hcccccEEEEecCcc
Confidence 5443 4889999853
No 273
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.07 E-value=0.026 Score=59.99 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhcc---CCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFID---TPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.-.+.-|+|.+|+|||+|+.+++-.... ....-..++||+...+|...++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4467889999999999999988643311 112235789999999999887655 5555543
No 274
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.036 Score=51.64 Aligned_cols=113 Identities=20% Similarity=0.180 Sum_probs=61.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC---CCCHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK---DMQLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
..|-|++..|.||||+|...+-+. ..+--.+.++..-+ ...-..+++.+- .+.. ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578888889999999999888776 23333445544322 233333443331 1100 01111111
Q ss_pred ----HHHHHHHHhccCcE-EEEEcccCCc-----cccccccccCCCCCCCeEEEEecCchh
Q 038480 218 ----KASDIFKILSKKKF-LLLLDDVWER-----IDLVKVGVPFPTSENASKVVFTTRLVD 268 (850)
Q Consensus 218 ----~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTtR~~~ 268 (850)
..+..++.+....| |||||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223444444444 9999999532 223334333444455678999999744
No 275
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0029 Score=62.38 Aligned_cols=88 Identities=31% Similarity=0.405 Sum_probs=60.1
Q ss_pred CCCCccceeecccccCCCCchhhhcCCCcceEEEccCC--CCCcccChhhccccCCCeEeecccccccccchhhcCCccc
Q 038480 504 PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKN--LSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLK 581 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~--~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~ 581 (850)
..+..|..|.+.+..++.+.. |..|++|++|.+|.| .....++-..-.+++|++|++++|+|+. ++++..+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl---- 112 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL---- 112 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchh----
Confidence 345667777777776655443 667899999999999 4445566566677999999999998875 3444333
Q ss_pred eeecccccccCCCccEEeccCCCCC
Q 038480 582 CWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 582 ~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
..+.+|..|+++.|..+
T Consensus 113 --------~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 --------KELENLKSLDLFNCSVT 129 (260)
T ss_pred --------hhhcchhhhhcccCCcc
Confidence 34455566666666533
No 276
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.02 E-value=0.036 Score=58.66 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhcc---CCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFID---TPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
...++.|+|.+|+|||||+..++..... ....-..++|++....+...++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4568999999999999999988764310 1112246799999888887763 44555544
No 277
>PRK04296 thymidine kinase; Provisional
Probab=96.01 E-value=0.0059 Score=59.64 Aligned_cols=109 Identities=18% Similarity=0.059 Sum_probs=60.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHhc
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFG----NKSLEEKASDIFKILS 227 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~l~ 227 (850)
.++.|+|..|.||||+|..+..+.. .....++.+. ..++.......++++++..- .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999998872 2233344342 11121222334455554311 1233444455544 23
Q ss_pred cCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh
Q 038480 228 KKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD 268 (850)
Q Consensus 228 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~ 268 (850)
++.-+||+|.+.-. .+..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999432 1122222111 235778999988643
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.01 E-value=0.0074 Score=59.42 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=59.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE-RIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
++|.|+|+.|+||||++..+.... .......+++- ..+.... .-...+..+-. ...+.....+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~--vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE--VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc--cCCCccCHHHHHHHHhcCCc
Confidence 578999999999999999887765 22223333332 1111100 00001111100 01122335566777787778
Q ss_pred EEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHh
Q 038480 231 FLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVC 270 (850)
Q Consensus 231 ~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 270 (850)
=.+++|++.+.......... ...|..++.|+-..++.
T Consensus 76 d~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 89999999766544433221 12355577777655443
No 279
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.017 Score=64.52 Aligned_cols=157 Identities=19% Similarity=0.082 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGSFGNKSLEEKASDIFKILS 227 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 227 (850)
...-|.|.|..|+|||+||+.+++.+. +...-.+.+|+++.-. ..+.+++.+- ..+-+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~---------------~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN---------------NVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH---------------HHHHHHHh
Confidence 345789999999999999999999983 5555567777776532 2333322221 12334455
Q ss_pred cCcEEEEEcccCCc--------cccccc---cccCC------CCCCCeE--EEEecCchhHhh-----hccCcceEeccC
Q 038480 228 KKKFLLLLDDVWER--------IDLVKV---GVPFP------TSENASK--VVFTTRLVDVCS-----LMGAQKKFKIEC 283 (850)
Q Consensus 228 ~k~~LlVlDdv~~~--------~~~~~~---~~~l~------~~~~gs~--iivTtR~~~v~~-----~~~~~~~~~l~~ 283 (850)
-.+-+|||||++-. .+|... ...+. ....+.+ +|-|.....-.. ..--...+.+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 67899999999632 122211 00000 1223444 333444322211 111234678888
Q ss_pred CChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC-CchHH
Q 038480 284 LRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG-LPLAL 326 (850)
Q Consensus 284 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai 326 (850)
+...+--++++......-. ....+...-++.+|+| .|.-+
T Consensus 573 p~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred cchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhH
Confidence 8888877777766543221 1122333447888877 34444
No 280
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.98 E-value=0.0033 Score=36.92 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=13.2
Q ss_pred CCCeEeecccccccccchhhc
Q 038480 556 SLQYLNLSETSIKELPNELKA 576 (850)
Q Consensus 556 ~L~~L~Ls~~~i~~LP~~i~~ 576 (850)
+|++|++++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366666666666666665544
No 281
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.4 Score=47.51 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=82.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh--ccCc
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKIL--SKKK 230 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l--~~k~ 230 (850)
--.++|++|.||||++.++++.. .||..- ...+...+- .+ |+..| ...+
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n-------------------~d----Lr~LL~~t~~k 287 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLD-------------------SD----LRHLLLATPNK 287 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCc-------------------HH----HHHHHHhCCCC
Confidence 35689999999999999999986 455321 222221111 11 22222 2345
Q ss_pred EEEEEcccCCcccc-----------c---------cccccCC--CCCC-CeEEE-EecCchhHhh--hc---cCcceEec
Q 038480 231 FLLLLDDVWERIDL-----------V---------KVGVPFP--TSEN-ASKVV-FTTRLVDVCS--LM---GAQKKFKI 281 (850)
Q Consensus 231 ~LlVlDdv~~~~~~-----------~---------~~~~~l~--~~~~-gs~ii-vTtR~~~v~~--~~---~~~~~~~l 281 (850)
-+||+.|++-..++ . .+...+. +..+ +-||| .||-..+-.+ .+ ..+..|.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67788888632111 1 1111111 1222 23555 4777555532 22 23457889
Q ss_pred cCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhc
Q 038480 282 ECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMG 334 (850)
Q Consensus 282 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~ 334 (850)
..-+.+....||....+... + ..+..+|.+.-.|.-+.=..++..|-
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~---h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---D---HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---C---cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 99999999999999886543 1 22356666666666555555555443
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.94 E-value=0.02 Score=56.15 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 139 LDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 139 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+.+..+...+-+++.|.|.+|+||||+++.+....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444444444455789999999999999999988776
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.92 E-value=0.0086 Score=66.49 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=39.7
Q ss_pred cccchhHHHHHHHHHhc------cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFE------EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.++.+++|++.|. +.+-+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46999999999999983 2456799999999999999999999876
No 284
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.92 E-value=0.034 Score=58.01 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+.++++++|++|+||||++..++... .....-..+..|+..... .....+....+.++. ....+..++...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 35699999999999999999998876 222111345556543321 122333334444443 112333444333333 3
Q ss_pred ccCcEEEEEccc
Q 038480 227 SKKKFLLLLDDV 238 (850)
Q Consensus 227 ~~k~~LlVlDdv 238 (850)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
No 285
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.6 Score=50.11 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec-CCCCHHHHHHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS-KDMQLERIQEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~ 209 (850)
...||-.+|.-|.||||-|-.+++.+ +. .. ..+.-|++. ..+..-+-++.++++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-kk-~~-~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-KK-KG-KKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-HH-cC-CceEEEecccCChHHHHHHHHHHHHcCC
Confidence 46799999999999999999999988 32 22 223333332 223455567788888776
No 286
>PRK06547 hypothetical protein; Provisional
Probab=95.90 E-value=0.011 Score=56.33 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 140 DKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 140 ~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.+...+......+|+|.|.+|+||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445555678899999999999999999998875
No 287
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.094 Score=59.93 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=85.8
Q ss_pred ccchhHHHHHHHHHhc---c----------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 132 IVGLESTLDKVWRCFE---E----------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~---~----------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
+.|.+..++.+.+.+. . ...+.+.++|++|.|||.||+++++.. ...|-.+. .. .
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~----~ 311 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS----E 311 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH----H
Confidence 4556666655554432 1 244578999999999999999999965 34443221 11 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccccc-------------cccccCC--CCCCCeEEEEe
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLV-------------KVGVPFP--TSENASKVVFT 263 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-------------~~~~~l~--~~~~gs~iivT 263 (850)
++. .+-..+.......+....+..+..|++|+++....+. .+...+. ....+..||-|
T Consensus 312 l~s-------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 312 LLS-------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred Hhc-------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 111 0112233333344444456789999999997432211 1111221 11223334445
Q ss_pred cCchhHhhhc-----cCcceEeccCCChhhHHHHHHHHhCCCC
Q 038480 264 TRLVDVCSLM-----GAQKKFKIECLRDKEAWELFLEKVGEEP 301 (850)
Q Consensus 264 tR~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 301 (850)
|-........ .-...+.+...+.++..+.|+.+.....
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 5444332211 2346889999999999999999886433
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.045 Score=60.25 Aligned_cols=86 Identities=23% Similarity=0.288 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--C---CCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--F---GNKSLEEKASDIF 223 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~---~~~~~~~~~~~l~ 223 (850)
...+|.++|.+|+||||.|..++... .. ..+ .+.-|++... ....+.++.++..++. . ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999877 32 222 3444544321 2234456666666654 1 1223333333333
Q ss_pred HHhccCcEEEEEcccC
Q 038480 224 KILSKKKFLLLLDDVW 239 (850)
Q Consensus 224 ~~l~~k~~LlVlDdv~ 239 (850)
+.+++. =+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 334444 467777773
No 289
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.04 Score=56.44 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH-hcC---CCCCCHHH---HHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER-IGS---FGNKSLEE---KASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~---~~~~~~~~---~~~~l 222 (850)
.-+++=|+|+.|+||||+|.+++-.. ......++|++..+.+++..+.. ++.. +.. ....+.++ .+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45688899999999999999987765 34445899999999999876644 3333 332 23333333 33344
Q ss_pred HHHhccCcEEEEEcccC
Q 038480 223 FKILSKKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~~k~~LlVlDdv~ 239 (850)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444446699999884
No 290
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.019 Score=64.52 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh--c
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKIL--S 227 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l--~ 227 (850)
.-++..++|++|+||||||+.+++.. .| .++=|.+|...+...+-..|...+.. ...+ .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~-------------~s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQN-------------HSVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhh-------------ccccccC
Confidence 45689999999999999999999875 23 36677788877776666666554432 1122 2
Q ss_pred cCcEEEEEcccCCc
Q 038480 228 KKKFLLLLDDVWER 241 (850)
Q Consensus 228 ~k~~LlVlDdv~~~ 241 (850)
+++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57888999999754
No 291
>PRK10867 signal recognition particle protein; Provisional
Probab=95.86 E-value=0.041 Score=60.42 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988888766
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.85 E-value=0.039 Score=60.52 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC-----CCCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS-----FGNKSLEEKASDIF 223 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~l~ 223 (850)
+..++.++|.+|+||||.|..++... ..+..+ .++-|++... +...+.++..+...+. ....+..+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999999888775 211222 3444443321 1223334444555443 12233444444444
Q ss_pred HHhccCcE-EEEEcccC
Q 038480 224 KILSKKKF-LLLLDDVW 239 (850)
Q Consensus 224 ~~l~~k~~-LlVlDdv~ 239 (850)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44444444 66666663
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=95.83 E-value=0.069 Score=56.67 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhcC-----CCCCCHHHHHHH-
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGS-----FGNKSLEEKASD- 221 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~-----~~~~~~~~~~~~- 221 (850)
+..+|.++|+.|+||||++..++... . ...+ .++.+.. ..+ ...+.++..+..++. ....+....+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999998888776 2 2233 3344432 222 233345556666654 112233232222
Q ss_pred HHHHhccCcEEEEEcccC
Q 038480 222 IFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 222 l~~~l~~k~~LlVlDdv~ 239 (850)
+...-....=+|++|-+-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222111222288888884
No 294
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.81 E-value=0.0094 Score=54.88 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=31.3
Q ss_pred cchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 133 VGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
||....++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666666777666653 344567899999999999999998876
No 295
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.13 Score=54.65 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+.++|+.|+||||+|+.+....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998875
No 296
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.024 Score=65.68 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=86.7
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-----CEEEEEEecCCCCHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-----DVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.++||+++++++++.|....-.--.++|.+|||||++|.-++.+.. .+.- +..++. -+|..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE------------ecHHH
Confidence 3699999999999999753222234789999999999988887752 1111 111111 01111
Q ss_pred HhcC-CCCCCHHHHHHHHHHHhc-cCcEEEEEcccCCcc----------ccccccccCCCCCCC-eEEE-EecCchhH--
Q 038480 206 RIGS-FGNKSLEEKASDIFKILS-KKKFLLLLDDVWERI----------DLVKVGVPFPTSENA-SKVV-FTTRLVDV-- 269 (850)
Q Consensus 206 ~l~~-~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~g-s~ii-vTtR~~~v-- 269 (850)
-..+ .-.-+.+++...+.+.++ .++..|++|.+.... +-..+..|. -..| -++| -||-++--
T Consensus 237 LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa--LARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 237 LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA--LARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH--HhcCCeEEEEeccHHHHHHH
Confidence 1111 112344555555555554 458999999997431 111222222 2223 3444 45543322
Q ss_pred ----hhhccCcceEeccCCChhhHHHHHHHHhC
Q 038480 270 ----CSLMGAQKKFKIECLRDKEAWELFLEKVG 298 (850)
Q Consensus 270 ----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (850)
+....-...+.+...+.+++..++.-...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 11222346789999999999999876553
No 297
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.79 E-value=0.045 Score=53.37 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHhc----cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFE----EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|.|..++.+++--. .....-|.+||.-|.|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 357999998888876443 2345578899999999999999999987
No 298
>PTZ00494 tuzin-like protein; Provisional
Probab=95.77 E-value=0.43 Score=51.14 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=95.0
Q ss_pred CCcccchhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
..++|.|+.+-..+-+.|.. ...+++.+.|.-|.||++|.+....+. .+ ..++|.+... ++-++.+++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCC---cchHHHHHH
Confidence 45689999888777777754 478899999999999999999888765 22 3577877766 445788899
Q ss_pred HhcCCCCCCHHHHHHHHHHH-------hccCcEEEEEcccCCccccccc---cccCCCCCCCeEEEEecCchhHhh---h
Q 038480 206 RIGSFGNKSLEEKASDIFKI-------LSKKKFLLLLDDVWERIDLVKV---GVPFPTSENASKVVFTTRLVDVCS---L 272 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~-------l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~iivTtR~~~v~~---~ 272 (850)
.++........+..+-+.+. ..++.=+||+-== +-..+..+ ...+.....-+.|++----+.+.. .
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 88873333333333333322 2344445554211 11111111 111222333455665433222211 1
Q ss_pred ccCcceEeccCCChhhHHHHHHHHh
Q 038480 273 MGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
+.--..|-+.+++.++|.+.-++..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1223578899999999998887654
No 299
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.043 Score=64.60 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=69.3
Q ss_pred CcccchhHHHHHHHHHhcc------C--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------V--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQE 201 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 201 (850)
..++|.++.+..|.+.+.. + ......+.|+.|+|||-||+++..-. -+..+..+-++.|+- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 4568888888888888754 1 35578899999999999999998876 445555566655442 22
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCcE-EEEEcccCCc
Q 038480 202 KIGERIGSFGNKSLEEKASDIFKILSKKKF-LLLLDDVWER 241 (850)
Q Consensus 202 ~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 241 (850)
+.+.++....--..+....|-+.++.++| +|+||||+..
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 33334442222223345578888888887 7789999743
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.69 E-value=0.034 Score=53.28 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccC--CC---CCC--EEEEEEecCCCCHHHHHHHHHHHhcCCC--------CCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDT--PN---DFD--VVIWVVVSKDMQLERIQEKIGERIGSFG--------NKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~ 214 (850)
.-.+++|+|+.|+|||||.+.+..+.-++ .. .|. .+.|+ .+ .+.++.++... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986432011 00 111 12332 22 34555555311 112
Q ss_pred HHHH-HHHHHHHhccC--cEEEEEcccCCccc---cccccccCCC-CCCCeEEEEecCchhHhhhccCcceEec
Q 038480 215 LEEK-ASDIFKILSKK--KFLLLLDDVWERID---LVKVGVPFPT-SENASKVVFTTRLVDVCSLMGAQKKFKI 281 (850)
Q Consensus 215 ~~~~-~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 281 (850)
..+. .-.+...+-.+ +-++++|+.-...+ ...+...+.. ...|..||++|.+.+... . +++.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 2221 22334445556 77889999854322 1222111111 123566888888777653 2 4455555
No 301
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.67 E-value=0.076 Score=56.58 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC----CCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP----NDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
...++-|+|.+|+|||+++..++-.. ... ..-..++||+....+...++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 45688899999999999999887543 111 122379999999999887764 55665543
No 302
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.05 Score=58.03 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+.++|+++|.+|+||||++..++... . ... ..+..++.... ....+-++..++.++. ....+..++...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998876 2 222 23445554322 1223333444444443 11235555555444432
Q ss_pred cc-CcEEEEEcccC
Q 038480 227 SK-KKFLLLLDDVW 239 (850)
Q Consensus 227 ~~-k~~LlVlDdv~ 239 (850)
.. +.=+|++|-.-
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 22 23367778774
No 303
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.66 E-value=0.009 Score=54.15 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 038480 154 IGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~ 174 (850)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.64 E-value=0.073 Score=50.08 Aligned_cols=121 Identities=20% Similarity=0.208 Sum_probs=69.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE---------------------ecCCC--------------
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV---------------------VSKDM-------------- 194 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~s~~~-------------- 194 (850)
+-.++.|+|++|.||||+.+.+|... +. =...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45689999999999999999999875 21 11233432 11111
Q ss_pred -------CHHHHHHHHHHHh---cC-------CCC-CCHHHHHHHHHHHhccCcEEEEEcccCC----ccccccccccCC
Q 038480 195 -------QLERIQEKIGERI---GS-------FGN-KSLEEKASDIFKILSKKKFLLLLDDVWE----RIDLVKVGVPFP 252 (850)
Q Consensus 195 -------~~~~~~~~i~~~l---~~-------~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~~~l~ 252 (850)
...++.+...+.+ +. +.. +.-++..-.|...+-+++-+|+=|.--. ...|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1223333332222 22 111 2223334456667778899999998642 222332211112
Q ss_pred CCCCCeEEEEecCchhHhhhcc
Q 038480 253 TSENASKVVFTTRLVDVCSLMG 274 (850)
Q Consensus 253 ~~~~gs~iivTtR~~~v~~~~~ 274 (850)
-+..|+.|+++|-+.++...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 2456899999999999877664
No 305
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.62 E-value=0.037 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.60 E-value=0.069 Score=55.21 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH--HHHHHHHHHHhcC-----CCCCCHHHH-HH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL--ERIQEKIGERIGS-----FGNKSLEEK-AS 220 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~-----~~~~~~~~~-~~ 220 (850)
.+.+++.++|++|+||||++..++... . ..-..+..+++.. +.. .+-++..++..+. ....+.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 346799999999999999999998876 2 2223566665442 222 2233334444443 112222222 23
Q ss_pred HHHHHhccCcEEEEEcccC
Q 038480 221 DIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 221 ~l~~~l~~k~~LlVlDdv~ 239 (850)
.+.....+..=++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3433333444578888874
No 307
>PTZ00035 Rad51 protein; Provisional
Probab=95.60 E-value=0.12 Score=55.10 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccC----CCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDT----PNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.-.++.|+|..|+|||||+..++-.. .. ...-..++||+....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45689999999999999999887554 21 112346789998888777764 444555443
No 308
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.60 E-value=0.051 Score=54.94 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++..+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999876
No 309
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.58 E-value=0.07 Score=56.80 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC----CCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP----NDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-.++-|+|.+|+||||++.+++-.. ... ..-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 35688999999999999999998764 211 111379999999988877654 3444443
No 310
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.57 E-value=0.043 Score=53.14 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC--CCCHHHHHH------HHHHHhcC-------CCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK--DMQLERIQE------KIGERIGS-------FGNKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~------~i~~~l~~-------~~~~~ 214 (850)
+-.+++|+|..|.|||||++.++.-. ......+++.-.. ..+...... ++++.++. ....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 44689999999999999999998764 1223333332111 112222211 23444443 11122
Q ss_pred HHH-HHHHHHHHhccCcEEEEEcccCCccc---cccccccCCC-CCC-CeEEEEecCchhHh
Q 038480 215 LEE-KASDIFKILSKKKFLLLLDDVWERID---LVKVGVPFPT-SEN-ASKVVFTTRLVDVC 270 (850)
Q Consensus 215 ~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~-gs~iivTtR~~~v~ 270 (850)
..+ ..-.+...+-..+-++++|+.-...+ ...+...+.. ... +..||++|.+.+..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222 22234555667888999999854322 2222221211 112 55688888776654
No 311
>PRK07667 uridine kinase; Provisional
Probab=95.57 E-value=0.016 Score=56.82 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 139 LDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 139 ~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.+.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555666543 345799999999999999999999876
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.53 E-value=0.048 Score=52.69 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|.|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998764
No 313
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.05 Score=58.34 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+..++.++|+.|+||||++.++.... ........+..++... .....+-++...+.++. ....+..+....+ ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHh
Confidence 34699999999999999999999876 1111223455555332 22344555556666655 1112222333333 334
Q ss_pred ccCcEEEEEcccC
Q 038480 227 SKKKFLLLLDDVW 239 (850)
Q Consensus 227 ~~k~~LlVlDdv~ 239 (850)
.++. ++++|..-
T Consensus 214 ~~~D-lVLIDTaG 225 (374)
T PRK14722 214 RNKH-MVLIDTIG 225 (374)
T ss_pred cCCC-EEEEcCCC
Confidence 4554 55689884
No 314
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.067 Score=57.02 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
...++-|+|.+|+|||+++.+++-.. .... .-..++||+....++...+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45688899999999999999998764 2111 114799999999888776654 344443
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.50 E-value=0.072 Score=54.79 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=67.8
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-C------
Q 038480 139 LDKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-F------ 210 (850)
Q Consensus 139 ~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~------ 210 (850)
.+.++..+.+ .+..-++|+|..|.|||||.+.+.... ......+++.-..-. ..+-..+++..... .
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEee-cchhHHHHHHHhcccccccccc
Confidence 3444444443 445689999999999999999999775 122223333211110 00111233332222 0
Q ss_pred --CCCCHHHHHHHHHHHhc-cCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHh
Q 038480 211 --GNKSLEEKASDIFKILS-KKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVC 270 (850)
Q Consensus 211 --~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 270 (850)
+..+.......+...+. -.+=++++|.+-....+..+...+ ..|..||+||-+..+.
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 01111112333444444 578899999997665555554333 2467799999876653
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.042 Score=59.36 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.45 E-value=0.12 Score=52.43 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
.-.++.|.|.+|+|||++|.++..... ..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 456899999999999999999876641 2356788888765 34445444
No 318
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.22 Score=48.70 Aligned_cols=182 Identities=15% Similarity=0.210 Sum_probs=99.4
Q ss_pred ccc-hhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 132 IVG-LESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 132 ~vg-r~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
++| .+..+.+|.+.+.= .+..-+.++|++|.|||-||+.|++.. . +-|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht---~-----c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---D-----CTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc---c-----eEEEEechH----
Confidence 344 56666666655431 255678899999999999999999875 1 345666654
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCccc------------c----ccccccCCC--CCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERID------------L----VKVGVPFPT--SENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~------------~----~~~~~~l~~--~~~gs 258 (850)
++.+..+ +. .....+.+.-.- ..-+-+|+.|.+++... . -++...+.. ..+.-
T Consensus 216 elvqk~i---ge-----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 216 ELVQKYI---GE-----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHHh---hh-----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 2222111 10 011111111111 24577888898874310 0 011112221 23456
Q ss_pred EEEEecCchhHhhh-----ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhh
Q 038480 259 KVVFTTRLVDVCSL-----MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAM 333 (850)
Q Consensus 259 ~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 333 (850)
|||.+|..-++... -..++.|+..+.+++.-.++++-+.........-+++.+|+++....|.--.++.+-|++.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~ 367 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMY 367 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHH
Confidence 78887765555322 1234678888888887778887766544422334455555555444444445566666643
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.43 E-value=0.074 Score=57.51 Aligned_cols=80 Identities=26% Similarity=0.387 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+|||||+.+++.... .....++|++..+. ..++ ..-++.++. ....+.+++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 346899999999999999999988762 22356788876543 3332 222334443 1122333333333
Q ss_pred HHHhccCcEEEEEccc
Q 038480 223 FKILSKKKFLLLLDDV 238 (850)
Q Consensus 223 ~~~l~~k~~LlVlDdv 238 (850)
. +.+.-+||+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 235667888887
No 320
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.42 E-value=0.038 Score=54.60 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=57.1
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CC
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FG 211 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~ 211 (850)
.++.+.. .+-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ....++.+++...-.. ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444433 234678999999999999999999886 2344577877754 4566666666543111 11
Q ss_pred CCCHH----------HHHHHHHHHhccCcEEEEEcccC
Q 038480 212 NKSLE----------EKASDIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 212 ~~~~~----------~~~~~l~~~l~~k~~LlVlDdv~ 239 (850)
..... ..++.+++ +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhH
Confidence 11111 11223333 6899999999993
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.092 Score=58.37 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
...+|+|+|.+|+||||++..+.... ........+..++... .......++.....++. ....+..++...+. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hh
Confidence 35799999999999999999988775 2222233455554422 11122233333333333 11223333333333 33
Q ss_pred ccCcEEEEEcccC
Q 038480 227 SKKKFLLLLDDVW 239 (850)
Q Consensus 227 ~~k~~LlVlDdv~ 239 (850)
.+ .=+|++|..-
T Consensus 427 ~~-~DLVLIDTaG 438 (559)
T PRK12727 427 RD-YKLVLIDTAG 438 (559)
T ss_pred cc-CCEEEecCCC
Confidence 33 4478888874
No 322
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.37 E-value=0.11 Score=53.44 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=31.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.-.++.|.|.+|+|||++|.++..... ..-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 456899999999999999999876641 22456788887643
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.36 E-value=0.014 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 324
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.36 E-value=0.024 Score=56.08 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=18.7
Q ss_pred hcCCCcceEEEccCCCCCcccChh----hccccCCCeEeecccccc
Q 038480 527 FDFMPSLRVLNLSKNLSLKQLPSE----ISKLVSLQYLNLSETSIK 568 (850)
Q Consensus 527 ~~~l~~L~~L~Ls~~~~i~~lp~~----i~~l~~L~~L~Ls~~~i~ 568 (850)
+-+|++|+..+||+|-.-...|.. |++-..|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 334555555555555222223322 233445555555555443
No 325
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.35 E-value=0.013 Score=57.54 Aligned_cols=23 Identities=43% Similarity=0.691 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 326
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.033 Score=54.26 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999988
No 327
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.32 Score=48.97 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=91.8
Q ss_pred cccchhHHHHHHHHHhc----------cC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDKVWRCFE----------EV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
.+-|.+..++.+.+... .. .-+-|.++|++|.||+-||++|+... ...| ++||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehH----H
Confidence 45788888888777642 11 34578899999999999999999886 2322 344443 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCc---------cccccccc-------cCCCCCCCeEEE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWER---------IDLVKVGV-------PFPTSENASKVV 261 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~~~-------~l~~~~~gs~ii 261 (850)
+....+ . .-+.+...+.+.- ++|+-+|++|.++.. +.-..+.. -...+..|.-|+
T Consensus 202 LvSKWm-------G-ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 202 LVSKWM-------G-ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHHHh-------c-cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 111111 1 1233444454443 478999999999731 11111111 111233454455
Q ss_pred EecCchhHhhhcc---CcceEeccCCChhhH-HHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 262 FTTRLVDVCSLMG---AQKKFKIECLRDKEA-WELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 262 vTtR~~~v~~~~~---~~~~~~l~~L~~~e~-~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
=.|..+-+....- -...|.+ +|.+..| ..+|+-+.|...... .++.-++++++..|.-
T Consensus 274 gATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGYS 335 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCCC
Confidence 4666555543221 1223333 3444444 457777776544211 2334566777776643
No 328
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.28 E-value=0.052 Score=63.46 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-+++-|.|.+|+||||||.+++... ...-..++|+...+.++.. .+++++. ......++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45688899999999999998876654 2233568999988877743 5666655 2334455556666
Q ss_pred HHHhcc-CcEEEEEcccC
Q 038480 223 FKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~ 239 (850)
.+.++. +.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 666644 56699999985
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.28 E-value=0.094 Score=53.25 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC--------------------
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------------------- 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------------------- 209 (850)
.-.++.|+|.+|+|||++|.++..... ..-..++|++..+. ..++.+.+ .+++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999976541 23457889988654 34454443 22321
Q ss_pred --CCCCCHHHHHHHHHHHhcc-CcEEEEEcccC
Q 038480 210 --FGNKSLEEKASDIFKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 210 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 239 (850)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0011224555666666653 55578888874
No 330
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.069 Score=56.44 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=58.6
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------
Q 038480 139 LDKVWRCFEEV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS------- 209 (850)
Q Consensus 139 ~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~------- 209 (850)
..++-+.|-.+ .-.+|.|-|-+|+|||||..+++.+.. ... .+++|+..+..... +--++.++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA-~~~---~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA-KRG---KVLYVSGEESLQQI---KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH-hcC---cEEEEeCCcCHHHH---HHHHHHhCCCccceEE
Confidence 34444555443 346899999999999999999999982 222 67888766653322 233445543
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 239 (850)
..+.+.+...+.+.+ .++-++|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 233444544444443 688899999984
No 331
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.27 E-value=0.059 Score=54.39 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHhcc-------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEE-------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|..-.++.|+..+.+ .+.-+++.+|.+|+||.-.++.+++..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 4578888888888887754 356699999999999999999998876
No 332
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.033 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 333
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.23 E-value=0.028 Score=61.72 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35799999999999988764 457899999999999999999875
No 334
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.23 E-value=0.023 Score=52.72 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV 189 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 189 (850)
..||.|+|.+|+||||||+.+.+.. ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3689999999999999999999987 22334455654
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.1 Score=55.54 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+.+++.++|+.|+||||++..++... ... -..+.+|++... ....+-++..++.++. ....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 46799999999999999999998776 222 235666765432 2234455566666554 22345555544443332
Q ss_pred c-cCcEEEEEcccC
Q 038480 227 S-KKKFLLLLDDVW 239 (850)
Q Consensus 227 ~-~k~~LlVlDdv~ 239 (850)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 233467777773
No 336
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.18 E-value=0.019 Score=57.22 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+..+|+|.|.+|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 337
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.15 E-value=0.094 Score=52.70 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=68.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-----CCCHHHHHHHHHHHhcC--------CCCCCHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-----DMQLERIQEKIGERIGS--------FGNKSLE 216 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~--------~~~~~~~ 216 (850)
+-.+++|+|..|+||||+++.+..=. .... ..+++...+ .....+-..++++.++. +..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45689999999999999999998754 2222 233333221 11233344555555554 1122223
Q ss_pred HHHH-HHHHHhccCcEEEEEcccCCcccc------ccccccCCCCCCCeEEEEecCchhHhhhccC
Q 038480 217 EKAS-DIFKILSKKKFLLLLDDVWERIDL------VKVGVPFPTSENASKVVFTTRLVDVCSLMGA 275 (850)
Q Consensus 217 ~~~~-~l~~~l~~k~~LlVlDdv~~~~~~------~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~ 275 (850)
++++ .+...+.-++-++|.|..-+..+. ..+...+. ...|-..+..|-+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 3333 456677889999999998544221 11111111 1235557777777777665543
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.14 E-value=0.14 Score=50.20 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCC-------CEEEEEEecCC
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-------DVVIWVVVSKD 193 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 193 (850)
.++.|.|.+|+||||++.++..........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5889999999999999999988773222222 36788877665
No 339
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.13 E-value=0.1 Score=57.19 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh-----cC--CCCCCHHH-----
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI-----GS--FGNKSLEE----- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~--~~~~~~~~----- 217 (850)
.-..++|+|..|+|||||++.+.... .....+++.......++.++........ +. ..+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44589999999999999999887653 2233455554434455555544333322 11 11111111
Q ss_pred -HHHHHHHHh--ccCcEEEEEcccC
Q 038480 218 -KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 218 -~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+-.+.+++ +++.+|+++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 112234444 4799999999994
No 340
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.11 E-value=0.068 Score=50.46 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEE---EEEecCCCCHHHHHHHHHHHhcC--------CCCCCHH---
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVI---WVVVSKDMQLERIQEKIGERIGS--------FGNKSLE--- 216 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l~~--------~~~~~~~--- 216 (850)
...|-|++..|.||||.|..+.-+.. ...+ .++ |+.......-..+++.+ .+.. +...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 36788888899999999998888762 2223 333 33333223334444433 1111 0111111
Q ss_pred ----HHHHHHHHHhccCcE-EEEEcccCCc-----cccccccccCCCCCCCeEEEEecCch
Q 038480 217 ----EKASDIFKILSKKKF-LLLLDDVWER-----IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 217 ----~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
+.....++.+...+| |||||.+-.. .+.+++...+.....+.-||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122333445545555 9999999532 22334433344445567899999975
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.10 E-value=0.12 Score=49.26 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCC--C---CEEEEEEecCCCCH--HHHHHHHHHHhcCCCCCCHH-HHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPND--F---DVVIWVVVSKDMQL--ERIQEKIGERIGSFGNKSLE-EKASD 221 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~-~~~~~ 221 (850)
.-.+++|+|..|.|||||++.+........+. + ..+.+ +.+.... ..+.+.+... .....+.. ...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc--CCCCCCHHHHHHHH
Confidence 44689999999999999999998865111111 1 11222 2333211 1223332210 11122222 22334
Q ss_pred HHHHhccCcEEEEEcccCCccc---cccccccCCCCCCCeEEEEecCchhHhhhccCcceEec
Q 038480 222 IFKILSKKKFLLLLDDVWERID---LVKVGVPFPTSENASKVVFTTRLVDVCSLMGAQKKFKI 281 (850)
Q Consensus 222 l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 281 (850)
+...+-.++=++++|+.-...+ ...+...+... +..||++|.+..... ..++.+.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4555666777889999854322 11221111111 345777777766543 24444444
No 342
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=3.8 Score=40.41 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=85.8
Q ss_pred ccchhHHHHHHHHHhc-------------cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 132 IVGLESTLDKVWRCFE-------------EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
+=|.+-.+++|.+... -+..+-|.++|++|.|||.||++|++.. ...| +.|... +
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f-----irvvgs----e 224 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF-----IRVVGS----E 224 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe-----eeeccH----H
Confidence 4466766666666542 1356678899999999999999999986 3344 333221 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc------------c----cccccccCCC--CCCCeE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI------------D----LVKVGVPFPT--SENASK 259 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~--~~~gs~ 259 (850)
. +-+.+|. .. ...+.+.+.- .+-+-+|++|.++... + +-++...... .....|
T Consensus 225 f---vqkylge----gp-rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 225 F---VQKYLGE----GP-RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred H---HHHHhcc----Cc-HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 1 1122221 11 1222233322 4668899999987421 0 1111111222 234568
Q ss_pred EEEecCchhHh-----hhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHH
Q 038480 260 VVFTTRLVDVC-----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPML 311 (850)
Q Consensus 260 iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 311 (850)
||..|...+.. .--.-++.|+..--+..+-.-.|.....+.....+.+++++
T Consensus 297 vimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~ 353 (408)
T KOG0727|consen 297 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDL 353 (408)
T ss_pred EEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHH
Confidence 88776543332 11122456666655566666677777665554444444443
No 343
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.10 E-value=0.052 Score=50.02 Aligned_cols=42 Identities=31% Similarity=0.335 Sum_probs=31.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHH
Q 038480 154 IGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQE 201 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 201 (850)
|.++|.+|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999886 1 1344567888777776654
No 344
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.09 E-value=0.076 Score=54.09 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhcc--CCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCH-HH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFID--TPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSL-EE 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~-~~ 217 (850)
+-.-++|.|-.|+|||+|+..+.+.. . .+..-+.++++-+.+. .+..++.+++.+.=.. ..+... ..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 44678999999999999999988775 2 1233577888888765 4566777766654221 111111 11
Q ss_pred -----HHHHHHHHhc---cCcEEEEEcccCC
Q 038480 218 -----KASDIFKILS---KKKFLLLLDDVWE 240 (850)
Q Consensus 218 -----~~~~l~~~l~---~k~~LlVlDdv~~ 240 (850)
.+-.+.++++ ++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1123455553 6899999999943
No 345
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.08 E-value=0.019 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998775
No 346
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.07 E-value=0.094 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 347
>PRK04328 hypothetical protein; Provisional
Probab=95.06 E-value=0.12 Score=52.80 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.-.++.|.|.+|+|||+||.++.... ...-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45689999999999999999987664 123456888887664
No 348
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.06 E-value=0.11 Score=54.05 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH--HHHhcCCCCCCHHHHHHHHHHHh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI--GERIGSFGNKSLEEKASDIFKIL 226 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~l~~~l 226 (850)
....+|+|.|..|+||||+|+.+..-. .....-..+..++...-......+... ....+.+..-+.+...+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll-~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL-SRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 356799999999999999998776554 110111124444433322222222221 11112234455666666666655
Q ss_pred ccC
Q 038480 227 SKK 229 (850)
Q Consensus 227 ~~k 229 (850)
.++
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 554
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.082 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|.|..|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999998865
No 350
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.04 E-value=0.017 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-|.|.|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999886
No 351
>PTZ00301 uridine kinase; Provisional
Probab=95.03 E-value=0.021 Score=56.38 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 352
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.11 Score=56.25 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC-CCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP-NDFDVVIWVVVSKD-MQLERIQEKIGERIGS--FGNKSLEEKASDIFKI 225 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~ 225 (850)
..++|.++|..|+||||.+..++..+.... ..-..+..+++... ......++..++.++. ....+.+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999988762111 12234555555432 1223335555665554 1223344444444432
Q ss_pred hccCcEEEEEcccC
Q 038480 226 LSKKKFLLLLDDVW 239 (850)
Q Consensus 226 l~~k~~LlVlDdv~ 239 (850)
.+.=++++|.+.
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 344588889884
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.92 E-value=0.089 Score=48.74 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhcc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-FGNKSLEEKASDIFKILSK 228 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~ 228 (850)
.-.+++|+|..|.|||||++.+..-. . .....+|+.... .++. .+-+..+...-.+...+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhc
Confidence 34689999999999999999998764 1 222333332100 0000 0011111222234455556
Q ss_pred CcEEEEEcccCCccc---cccccccCCCCCCCeEEEEecCchhHhh
Q 038480 229 KKFLLLLDDVWERID---LVKVGVPFPTSENASKVVFTTRLVDVCS 271 (850)
Q Consensus 229 k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~iivTtR~~~v~~ 271 (850)
++-++++|+.-...+ ...+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 777899999854322 22222112111 235777877666543
No 354
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.90 E-value=1.5 Score=46.48 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=36.5
Q ss_pred eEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 278 KFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 278 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
++++.+++.+|+..++.-.............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988765553332344556677777789999643
No 355
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.90 E-value=0.024 Score=56.38 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 356
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.88 E-value=0.046 Score=49.24 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=28.3
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 138 TLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 138 ~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.+++.+.+.. ..-.+|.+.|.-|+||||+++.+++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444432 234689999999999999999999986
No 357
>PRK03839 putative kinase; Provisional
Probab=94.85 E-value=0.023 Score=55.07 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 358
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.85 E-value=0.02 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988876
No 359
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.84 E-value=0.13 Score=45.48 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHhcc-------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE-------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+-..+.|++.+.+ .+.-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467777666666666643 356699999999999999998888773
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.84 E-value=0.027 Score=58.28 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=47.9
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 038480 140 DKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKA 219 (850)
Q Consensus 140 ~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 219 (850)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| .+.-+..+...+...+++.+-..+.....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG------- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-------
Confidence 34555555554 456899999999999999988765 2 1221 23445555554444333222111111000
Q ss_pred HHHHHHhccCcEEEEEcccC
Q 038480 220 SDIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 220 ~~l~~~l~~k~~LlVlDdv~ 239 (850)
....--.+|+.++++||+.
T Consensus 92 -~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 -RVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -EEEEEESSSEEEEEEETTT
T ss_pred -CCCCCCCCcEEEEEecccC
Confidence 0000013688899999995
No 361
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.82 E-value=0.073 Score=53.75 Aligned_cols=84 Identities=25% Similarity=0.306 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCC-CCEEEEEEecCCCCHHHHHHHHHHHhcC----------------C-C
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPND-FDVVIWVVVSKDMQLERIQEKIGERIGS----------------F-G 211 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~----------------~-~ 211 (850)
.-.++.|.|.+|+|||+++.++..... .. -+.++||+..++. .++.+.+. +++. . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 456999999999999999998775541 22 3467888876653 44444332 2221 0 0
Q ss_pred -----CCCHHHHHHHHHHHhcc-CcEEEEEcccC
Q 038480 212 -----NKSLEEKASDIFKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 212 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 239 (850)
..+.++....+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566677777776654 55788888874
No 362
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.81 E-value=0.05 Score=51.70 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC--CCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD--MQLERIQEKIGERIGS-FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l 226 (850)
.-.+++|.|..|.|||||.+.++... ......+++..... .+..+.. ...++. .+-+.-+...-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHH
Confidence 34689999999999999999998764 22334444432111 1111111 111211 11111222223345556
Q ss_pred ccCcEEEEEcccCCccc---cccccccCCC-CCCCeEEEEecCchhHhh
Q 038480 227 SKKKFLLLLDDVWERID---LVKVGVPFPT-SENASKVVFTTRLVDVCS 271 (850)
Q Consensus 227 ~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 271 (850)
-.++-++++|+.-..-+ ...+...+.. ...|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 66788899999864322 1122111111 123556888888766433
No 363
>PRK06217 hypothetical protein; Validated
Probab=94.78 E-value=0.049 Score=52.92 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=26.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCC--CEEEEE
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDF--DVVIWV 188 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv 188 (850)
.|.|.|.+|+||||+|+.+.... . -.+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~-~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-D-IPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-CcEEEcCceeec
Confidence 48999999999999999999886 2 2233 455664
No 364
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.77 E-value=0.026 Score=55.15 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++|+|.|++|+||||+|+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 365
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.76 E-value=1.2 Score=46.75 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHH
Q 038480 133 VGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERI 199 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 199 (850)
+=..+....++.++..+ +.|.|.|..|+||||+|+.++... ... .+.|.++...+..++
T Consensus 48 ~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 48 LFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred cCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 33334555677776543 468999999999999999999987 222 235555555444433
No 366
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.74 E-value=0.097 Score=57.09 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCcccchhHHHHHHHHHhc-------c---C--------CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 129 EPTIVGLESTLDKVWRCFE-------E---V--------QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~-------~---~--------~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...++|.++.++.+...+. . . ....|.++|++|+|||++|+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4567999999888866551 1 0 12468999999999999999999765
No 367
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.74 E-value=0.11 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998754
No 368
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.74 E-value=0.17 Score=52.21 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=27.3
Q ss_pred HHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 144 RCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 144 ~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+++.+.+..+|.|.|..|+|||||+..+.+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444678899999999999999999999886
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.71 E-value=0.055 Score=52.71 Aligned_cols=43 Identities=30% Similarity=0.501 Sum_probs=30.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.|+|+|-||+||||+|........ .++.| .++-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCChH
Confidence 689999999999999999777762 22323 35666666666543
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.64 E-value=0.023 Score=50.26 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCCCCC
Q 038480 154 IGLYGMGGVGKTTLLTQINNKFIDTPNDFD 183 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 183 (850)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999886 55664
No 371
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.62 E-value=0.37 Score=48.73 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 456899999999999999998876542 22456788877443
No 372
>PRK06851 hypothetical protein; Provisional
Probab=94.62 E-value=0.45 Score=51.00 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 133 VGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
-|.-.-.+.+. ++--+++.|.|.+|+|||||++.++... . ...++..++-|.+.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 35444444444 3445789999999999999999999987 2 445665555554444
No 373
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.62 E-value=0.076 Score=57.21 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred CcccchhHHHHHHHHHhccC--------------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CEEEEEE-ec
Q 038480 130 PTIVGLESTLDKVWRCFEEV--------------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DVVIWVV-VS 191 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~--------------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~-~s 191 (850)
..++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.+.... ...| +..-++. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 45789988888886555421 23578899999999999999999886 2333 2221221 12
Q ss_pred CCCCHHHHHHHHHHH
Q 038480 192 KDMQLERIQEKIGER 206 (850)
Q Consensus 192 ~~~~~~~~~~~i~~~ 206 (850)
...+.+.+++.+...
T Consensus 89 vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 89 VGRDVESMVRDLTDA 103 (441)
T ss_pred ccCCHHHHHHHHHHH
Confidence 233566666665544
No 374
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.60 E-value=0.22 Score=56.51 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=40.0
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 139 LDKVWRCFEEV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 139 ~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
+..+-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-+.+++++..+. ..++.+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHH
Confidence 34444555442 456899999999999999999988762 23456777776554 4444444
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=94.60 E-value=0.23 Score=49.83 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI 203 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 203 (850)
.-.++.|.|.+|+|||++|.++..... ..-..+++++...+ ..++.+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 346899999999999999999887652 22345777776655 34444443
No 376
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.03 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 377
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.051 Score=48.76 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKK 230 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 230 (850)
.+-|.|.|.+|+||||+|..++... .| -|+++|.-..-..++...-+... ..-.+.+.+...|...+.+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~-c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYK-CHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhccccccc-CccccHHHHHHHHHHHHhcCC
Confidence 3568899999999999999998654 22 36666543222222222111111 112355556666666665544
Q ss_pred E
Q 038480 231 F 231 (850)
Q Consensus 231 ~ 231 (850)
+
T Consensus 78 ~ 78 (176)
T KOG3347|consen 78 N 78 (176)
T ss_pred c
Confidence 4
No 378
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=1.6 Score=45.74 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhc-------cCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHhcC
Q 038480 139 LDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFI-------DTPNDFDVVIWVVV-SKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 139 ~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~-------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 209 (850)
++.+.+.+..++. ++..++|..|.||+++|..+.+... ....+-+.+.++.. ......+++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4445555655544 4566999999999999999887751 01112222333332 1112222222 22222211
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecC-chhHhhhc-cCcceEeccCCC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTR-LVDVCSLM-GAQKKFKIECLR 285 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~ 285 (850)
.. .-.+++-++|+|+++... ....+...+-.....+.+|++|. ...+...+ .....+++.+++
T Consensus 84 ~~-------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 84 SS-------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred CC-------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 00 002467789999986432 23444444433345666665554 34443332 335689999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 286 DKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 286 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
+++....+... + .+ ++.+..++...+|.=.|+..
T Consensus 151 ~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 151 QQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 99998777653 1 11 23466677777763344444
No 379
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.08 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.|.+.|.+|+||||+|+++.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999998876
No 380
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.54 E-value=0.15 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.51 E-value=0.099 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 382
>PRK04040 adenylate kinase; Provisional
Probab=94.49 E-value=0.033 Score=54.10 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 383
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=1.1 Score=51.01 Aligned_cols=170 Identities=20% Similarity=0.169 Sum_probs=92.5
Q ss_pred ccchhHHHHHHHHHhcc----------C---CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 132 IVGLESTLDKVWRCFEE----------V---QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~----------~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
+-|..+.++.+.+.+.- - -..-|.++|++|.|||-||-++.... . .-+|+|..+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----H
Confidence 34555555555555531 1 12358899999999999999998775 1 235666554 2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------cccccccCC--CCCCCeEEEE-
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVPFP--TSENASKVVF- 262 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~gs~iiv- 262 (850)
++.. .+| .+++.......+.-..|++++.||.+++..- ...+..-+. .+-.|.-|+-
T Consensus 737 lL~K---yIG----aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 737 LLSK---YIG----ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HHHH---Hhc----ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 2222 222 3334444444444457999999999975310 112222221 1224554554
Q ss_pred ecCchhHhh--hcc---CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchH
Q 038480 263 TTRLVDVCS--LMG---AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLA 325 (850)
Q Consensus 263 TtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 325 (850)
||| ++..+ .+. -++.+.-+..++.|-.++++..+..-....+.+ .+.++.+..|..-|
T Consensus 810 TsR-pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 810 TSR-PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred cCC-ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 556 33321 111 233444455667777788877664333222222 46677777776544
No 384
>PRK15453 phosphoribulokinase; Provisional
Probab=94.49 E-value=0.22 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+..+|+|.|.+|+||||+|+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998766
No 385
>PRK00625 shikimate kinase; Provisional
Probab=94.47 E-value=0.031 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.++||.|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 386
>PRK05439 pantothenate kinase; Provisional
Probab=94.46 E-value=0.19 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356699999999999999999988765
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.46 E-value=0.15 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 388
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.45 E-value=0.13 Score=56.92 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS--FGNKSLEEKASDIFKILS 227 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l~ 227 (850)
.+++.++|++|+||||++..++... ........+..|+..... ...+.++...+.++. ....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 3689999999999999999888776 201223456666653321 112223333444443 122333444444443 23
Q ss_pred cCcEEEEEccc
Q 038480 228 KKKFLLLLDDV 238 (850)
Q Consensus 228 ~k~~LlVlDdv 238 (850)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888876
No 389
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.037 Score=54.79 Aligned_cols=124 Identities=20% Similarity=0.305 Sum_probs=74.5
Q ss_pred cCCCCCCccceeecccccCCCC----chhhhcCCCcceEEEccCCCCCcccCh-hh-------------ccccCCCeEee
Q 038480 501 SETPTCPHLVTLFLAINKLDTI----TSNFFDFMPSLRVLNLSKNLSLKQLPS-EI-------------SKLVSLQYLNL 562 (850)
Q Consensus 501 ~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i-------------~~l~~L~~L~L 562 (850)
+.+.+||+|+..+|+.|.+..- ...++.+-..|..|.|++| .++.+.. .| ..-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 5568999999999999975322 2345778889999999999 7665431 12 23456777777
Q ss_pred cccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCc
Q 038480 563 SETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRS 642 (850)
Q Consensus 563 s~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 642 (850)
..|.+...|...... .+.+-.+|+++.+..|++....+ ..-....+..+.+|+.|++..|.
T Consensus 165 grNRlengs~~~~a~----------~l~sh~~lk~vki~qNgIrpegv---------~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 165 GRNRLENGSKELSAA----------LLESHENLKEVKIQQNGIRPEGV---------TMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred ccchhccCcHHHHHH----------HHHhhcCceeEEeeecCcCcchh---------HHHHHHHHHHhCcceeeeccccc
Confidence 777766555433221 11222456667777666432111 11123344556677777776665
Q ss_pred hh
Q 038480 643 FC 644 (850)
Q Consensus 643 ~~ 644 (850)
++
T Consensus 226 ft 227 (388)
T COG5238 226 FT 227 (388)
T ss_pred hh
Confidence 44
No 390
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.42 E-value=0.017 Score=33.80 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=15.4
Q ss_pred cceEEEccCCCCCcccChhhcc
Q 038480 532 SLRVLNLSKNLSLKQLPSEISK 553 (850)
Q Consensus 532 ~L~~L~Ls~~~~i~~lp~~i~~ 553 (850)
+|++|+|++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4778888888 77777776654
No 391
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.42 E-value=0.2 Score=55.79 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc
Confidence 346899999999999999999988762 22346788876543
No 392
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.39 E-value=0.069 Score=54.08 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 140 DKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 140 ~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
.+++..+.. ++..+|+|+|.+|+|||||.-.+...+ ...++--.++=|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 445555543 467799999999999999999998887 444554456666666666544443
No 393
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.38 E-value=0.29 Score=54.63 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 139 LDKVWRCFEEV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 139 ~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
+..+-+.|..+ .-.++.|.|.+|+|||||+.++.....+ .-..++|++..+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC
Confidence 34444444432 4568999999999999999999877621 2235788876543
No 394
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.38 E-value=0.025 Score=67.18 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh-ccCCC------------CCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF-IDTPN------------DFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLE 216 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~-~~~~~------------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 216 (850)
+..+++|+|+.|.||||+.+.+.... ....+ .|+.+ +..+... +.+.+.+.. ..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~-------~si~~~LSt-----fS 387 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDE-------QSIEQNLST-----FS 387 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChH-------hHHhhhhhH-----HH
Confidence 44789999999999999999886651 00011 11111 1111111 111111110 01
Q ss_pred HHHHHHHHHhc--cCcEEEEEcccCCccc---ccc----ccccCCCCCCCeEEEEecCchhHhhhccCcceEeccCCChh
Q 038480 217 EKASDIFKILS--KKKFLLLLDDVWERID---LVK----VGVPFPTSENASKVVFTTRLVDVCSLMGAQKKFKIECLRDK 287 (850)
Q Consensus 217 ~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~----~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~ 287 (850)
.-...+...+. ..+-|+++|.+-...+ ... +...+. ..|+.+|+||-..++.........+.-..+..+
T Consensus 388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d 465 (771)
T TIGR01069 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFD 465 (771)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEc
Confidence 11112222222 4789999999964322 112 222221 357789999998877443222111111111111
Q ss_pred hHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 038480 288 EAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRR 351 (850)
Q Consensus 288 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (850)
+----|....- .+ .+. ...|-+|++++ |+|-.|..-|..+... ....+...++.+..
T Consensus 466 ~~~l~p~Ykl~-~G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 466 EETLSPTYKLL-KG-IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred CCCCceEEEEC-CC-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 10000111110 11 011 33588888887 7888888777766542 33445555555443
No 395
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.37 E-value=0.19 Score=55.43 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
+-.-++|.|.+|+|||||+..+.+.. . +.+-+.++++-+.+. ....++.+++...-.. ..+.+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45679999999999999999988876 2 235677888877654 4566666666543221 11111111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEcccC
Q 038480 218 ---KASDIFKIL---SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l---~~k~~LlVlDdv~ 239 (850)
.+..+.+++ +++++|+++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 123345555 3789999999994
No 396
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.37 E-value=0.24 Score=54.52 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
+-.-++|.|.+|+|||||+..+.... .. .+-+.++++-+.+. ..+.++.+++...=.. ..+....+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45679999999999999999887765 21 12246777777654 4566666666653221 11121111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEcccC
Q 038480 218 ---KASDIFKIL---SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l---~~k~~LlVlDdv~ 239 (850)
.+-.+.+++ +++++||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 123355666 6799999999994
No 397
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.37 E-value=0.054 Score=51.66 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ 195 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 195 (850)
..++.+.|+.|+|||.||+.+.+.. .. +.....+-+.++.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l-~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL-FV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH-T--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh-cc-CCccchHHHhhhcccc
Confidence 4678899999999999999999987 21 4555667777666544
No 398
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.37 E-value=0.077 Score=61.31 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=57.5
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ....++..+|..-+. .+...+++.+...++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~np~-~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPNPE-DPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeCCC-cchHHHHHHHHHhcCH
Confidence 35789998888888877654 468899999999999999999876 244567888876633 3677777777776654
No 399
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.35 E-value=0.067 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.|.|+|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 400
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.34 E-value=1.1 Score=53.58 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=88.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhc-------------cCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFI-------------DTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLE 216 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~-------------~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 216 (850)
+.+++.|+|+.+.||||+.+.+.--.. ..-..|+. ++..+....++..-+..+...+ .
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m--------~ 396 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHM--------T 396 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHHH--------H
Confidence 457899999999999999998854310 01122332 2333333322222111111111 1
Q ss_pred HHHHHHHHHhccCcEEEEEcccCCccc---cccc----cccCCCCCCCeEEEEecCchhHhhhccCcceEeccCCCh-hh
Q 038480 217 EKASDIFKILSKKKFLLLLDDVWERID---LVKV----GVPFPTSENASKVVFTTRLVDVCSLMGAQKKFKIECLRD-KE 288 (850)
Q Consensus 217 ~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~-~e 288 (850)
+... +...+ ..+-|+++|..-...+ -..+ ...+. ..|+.+|+||...++.........+.-..+.. ++
T Consensus 397 ~~~~-Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~ 472 (782)
T PRK00409 397 NIVR-ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEE 472 (782)
T ss_pred HHHH-HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC
Confidence 1111 22222 4778999999964322 1122 22221 24678999999888765443222111111111 11
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 038480 289 AWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRR 351 (850)
Q Consensus 289 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (850)
... +.... ..+ .+ -...|-+|++.+ |+|-.|..-|..+... ....+...+..+..
T Consensus 473 ~l~-~~Ykl-~~G-~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 473 TLR-PTYRL-LIG-IP---GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred cCc-EEEEE-eeC-CC---CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 100 00001 011 01 133488888888 7888888877766442 33345555544433
No 401
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.32 E-value=0.19 Score=51.23 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHHhhccCCCCCCEE-EEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLL-TQINNKFIDTPNDFDVV-IWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEEK 218 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~~ 218 (850)
+-.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+++.+.-.. ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467899999999999996 5555432 22334 66666554 4566666666643211 111111111
Q ss_pred ------HHHHHHHh--ccCcEEEEEcccCC
Q 038480 219 ------ASDIFKIL--SKKKFLLLLDDVWE 240 (850)
Q Consensus 219 ------~~~l~~~l--~~k~~LlVlDdv~~ 240 (850)
+-.+.+++ +++.+|||+||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 12233333 57999999999943
No 402
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.29 E-value=0.32 Score=49.07 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI 203 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 203 (850)
.-.++.|.|..|+||||+|.+++....+ .. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCCC--CHHHHHHHH
Confidence 3459999999999999998776665411 12 4456666433 445666655
No 403
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.28 E-value=0.13 Score=55.47 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=49.5
Q ss_pred CcccchhHHHHHHHHHhcc---------C-----CceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CEEEEEE-ec
Q 038480 130 PTIVGLESTLDKVWRCFEE---------V-----QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DVVIWVV-VS 191 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~---------~-----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~-~s 191 (850)
..++|.+..++.+..++.. . ....|.++|+.|+|||++|+.+.... ...| +..-|.. ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 91 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhccCCc
Confidence 4579999999988877743 0 13578999999999999999999876 2333 2222222 22
Q ss_pred CCCCHHHHHHHHHHHh
Q 038480 192 KDMQLERIQEKIGERI 207 (850)
Q Consensus 192 ~~~~~~~~~~~i~~~l 207 (850)
...+...+.+.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2335566666665544
No 404
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.28 E-value=0.032 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 405
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.25 E-value=0.077 Score=57.69 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 138 TLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 138 ~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+.+++.+.......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34555666665666789999999999999999999887
No 406
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.25 E-value=0.056 Score=49.64 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999982 34555555666555
No 407
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.24 E-value=0.063 Score=52.13 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS 191 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 191 (850)
.++|.|+|+.|+|||||++.+.... ...|...++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4789999999999999999999987 5677655555433
No 408
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.23 E-value=0.18 Score=55.09 Aligned_cols=86 Identities=27% Similarity=0.310 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC--------CCCCCH-HH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS--------FGNKSL-EE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--------~~~~~~-~~--- 217 (850)
+-..++|.|..|+|||||++.+.... .....++...........++.++....-+. ..+... ..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999888764 122233333333344555565554433222 111111 11
Q ss_pred --HHHHHHHHh--ccCcEEEEEcccC
Q 038480 218 --KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 218 --~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+..+.+++ +++++|+++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 5789999999994
No 409
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.22 E-value=0.23 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998875
No 410
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.22 E-value=0.09 Score=52.51 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHH
Q 038480 138 TLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERI 199 (850)
Q Consensus 138 ~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 199 (850)
...++++.+.. .+..+|+|.|++|+|||||+-.+...+ ..+++=-.++=|+=|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 34455555543 467799999999999999999998887 32333334555555555554433
No 411
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.20 E-value=0.29 Score=53.58 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHHH--
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEEK-- 218 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~~-- 218 (850)
+-..++|+|..|+|||||++.+++.. ..+.++++-+.+. ....++..+.+..-+. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998764 1244555655544 3455555444433222 111111111
Q ss_pred ----HHHHHHHh--ccCcEEEEEcccC
Q 038480 219 ----ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 219 ----~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
+-.+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 12244444 5899999999994
No 412
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.19 E-value=0.18 Score=58.28 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.++..|.|.+|.||||+++.+.....+....-...+.+......-...+.+.+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 36899999999999999999887652211111245666655554455555555443
No 413
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.18 E-value=0.17 Score=48.12 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=47.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhcc--Cc
Q 038480 154 IGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-FGNKSLEEKASDIFKILSK--KK 230 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~--k~ 230 (850)
+.|.|.+|+|||++|.++.... ...++++.-.+.++.+ +.+.|.+.... .......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 6799999999999999997652 2356777777776653 44444332221 2223333334445555532 23
Q ss_pred EEEEEccc
Q 038480 231 FLLLLDDV 238 (850)
Q Consensus 231 ~LlVlDdv 238 (850)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999998
No 414
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.18 E-value=0.3 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998754
No 415
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.16 E-value=0.14 Score=53.92 Aligned_cols=85 Identities=26% Similarity=0.314 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec-CCCCHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS-KDMQLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
.-..++|+|..|+|||||++.+.... . -+..+..-+. ...+..++.......-+. ..+....+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44689999999999999999988764 1 2333334443 344566665555544222 11111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEcccC
Q 038480 218 ---KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+-.+.+++ ++|.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112233333 5899999999984
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.15 E-value=0.35 Score=51.66 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=38.3
Q ss_pred HHHHHHHhccC----CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC
Q 038480 139 LDKVWRCFEEV----QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS 209 (850)
Q Consensus 139 ~~~l~~~l~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 209 (850)
...+..++.++ +-++|.++|+.||||||-..+++.++ .....=..+..|+...- -...+-++..++-++.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence 33344444443 46899999999999966554444444 11223344666654332 2334444445555544
No 417
>PRK14528 adenylate kinase; Provisional
Probab=94.15 E-value=0.16 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.|.|.|++|+||||+|+.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998776
No 418
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.14 E-value=0.18 Score=51.06 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=41.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC--CCCHHHHHHHHHHHhc------C--CCCCCHHHHHHHH
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK--DMQLERIQEKIGERIG------S--FGNKSLEEKASDI 222 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~------~--~~~~~~~~~~~~l 222 (850)
+|+|.|.+|+||||+++.+.+.+ ...+ ..+..++... ..+....-..+..... . +...+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998876 2111 1233343221 1222222222332221 1 3445566667777
Q ss_pred HHHhccC
Q 038480 223 FKILSKK 229 (850)
Q Consensus 223 ~~~l~~k 229 (850)
+.+.+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7766654
No 419
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.13 E-value=0.15 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 420
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.13 E-value=0.046 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|.|+|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999886
No 421
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.035 Score=54.80 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|..|+||||+|+.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 422
>PRK08149 ATP synthase SpaL; Validated
Probab=94.11 E-value=0.13 Score=56.22 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC--------CCCCCHH----
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS--------FGNKSLE---- 216 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~--------~~~~~~~---- 216 (850)
+-..++|+|..|+|||||+..++... .-+.++...+.. ..++.++..+....... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999998754 223444444443 34566666666554321 1111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEcccC
Q 038480 217 --EKASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 217 --~~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
..+..+.+++ ++|++||++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 1122334444 5899999999994
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.039 Score=51.15 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 038480 153 IIGLYGMGGVGKTTLLTQIN 172 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~ 172 (850)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.08 E-value=0.29 Score=53.52 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+..+++++|..|+||||++..+.... ......+.+..+..... ....+-+...++.++. ....+..+....+ ..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HEL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHh
Confidence 34699999999999999999887764 11222234444443221 2233334455555544 1123333333222 234
Q ss_pred ccCcEEEEEccc
Q 038480 227 SKKKFLLLLDDV 238 (850)
Q Consensus 227 ~~k~~LlVlDdv 238 (850)
+++. ++++|-.
T Consensus 268 ~~~d-~VLIDTa 278 (420)
T PRK14721 268 RGKH-MVLIDTV 278 (420)
T ss_pred cCCC-EEEecCC
Confidence 4443 4566665
No 425
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.45 Score=46.89 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=100.6
Q ss_pred cccCCC--CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE
Q 038480 124 DERPLE--PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV 188 (850)
Q Consensus 124 ~~~~~~--~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (850)
++.|++ +.+=|.+..++++++.+.= ....-|..+|++|.|||-+|++.+... ...|=
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL----- 234 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL----- 234 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH-----
Confidence 444443 3466889999999888731 134568899999999999999988764 33331
Q ss_pred EecCCCCHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHhc-cCcEEEEEcccCCcc----c------------ccccccc
Q 038480 189 VVSKDMQLERIQE-KIGERIGSFGNKSLEEKASDIFKILS-KKKFLLLLDDVWERI----D------------LVKVGVP 250 (850)
Q Consensus 189 ~~s~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----~------------~~~~~~~ 250 (850)
++.. ++++.+-+ +...+.+.-...-+ ..+.+|++|.++... + .-++...
T Consensus 235 ---------KLAgPQLVQMfIG----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 235 ---------KLAGPQLVQMFIG----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred ---------HhcchHHHhhhhc----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 1100 11111111 11112222222223 468899999986311 0 0111222
Q ss_pred CCCC--CCCeEEEEecCchhHh-----hhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 251 FPTS--ENASKVVFTTRLVDVC-----SLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 251 l~~~--~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
+... ....|||-.|...++. ..-.-++.|+....+++.-..++.-+........+-+++++++.--.--|.--
T Consensus 302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQc 381 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQC 381 (424)
T ss_pred hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhh
Confidence 2222 2346778777655553 22223456666555555555566656655555556667666654333223333
Q ss_pred hHHHHHHhhhc
Q 038480 324 LALITIGRAMG 334 (850)
Q Consensus 324 lai~~~~~~l~ 334 (850)
.|+.+=|++++
T Consensus 382 KAVcVEAGMiA 392 (424)
T KOG0652|consen 382 KAVCVEAGMIA 392 (424)
T ss_pred eeeehhhhHHH
Confidence 45556566543
No 426
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.04 E-value=0.054 Score=56.99 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=31.8
Q ss_pred cchhHHHHHHHHHhcc-----------------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 133 VGLESTLDKVWRCFEE-----------------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|-..+...|.+..-. ....+++|+|.+|.||||+.+.+....
T Consensus 374 ~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 374 KGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred ccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 4555667777666531 234589999999999999999987764
No 427
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.44 Score=53.96 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=92.4
Q ss_pred cccchhHHHHH---HHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 131 TIVGLESTLDK---VWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 131 ~~vgr~~~~~~---l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
++-|.|+.+++ +++.|.+. -++=|.++|++|.|||.||+++.... .+ .| ++.|..
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS----- 217 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS----- 217 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch-----
Confidence 45788776655 45556542 13458899999999999999999986 33 22 122221
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc------------c----cccccccCCCCC--CCeEE
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI------------D----LVKVGVPFPTSE--NASKV 260 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~--~gs~i 260 (850)
+.++.+- ............+..++-++++++|.++... . +..+..-..... .|-.|
T Consensus 218 ---~FVemfV---GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv 291 (596)
T COG0465 218 ---DFVEMFV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV 291 (596)
T ss_pred ---hhhhhhc---CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE
Confidence 1111111 1112222334445556678999999986321 1 122211111222 34334
Q ss_pred EEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch
Q 038480 261 VFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL 324 (850)
Q Consensus 261 ivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 324 (850)
+-.|-.++|... + .-++.+.++..+-..-.++++-++........-++ ..|++.+-|.-.
T Consensus 292 iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsG 356 (596)
T COG0465 292 IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSG 356 (596)
T ss_pred EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCccc
Confidence 444544666322 1 23456777777777777888866654443333333 237777766543
No 428
>PF13245 AAA_19: Part of AAA domain
Probab=94.01 E-value=0.11 Score=41.76 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.+++.|.|.+|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999996555544443
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.13 Score=49.43 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 430
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.99 E-value=0.15 Score=59.09 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=51.7
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
..++|.++.++.+...+.... .+.++|+.|+||||+|+.+.+.. . ...|..++++.-+ ..+...+++.++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 457899988888777776543 55599999999999999999876 2 2344444444322 23455667777776654
No 431
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.99 E-value=0.23 Score=54.78 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHHhhccC-----CCCCCEEEEEEecCCCC-HHHHHHHHHHHhcC---------CCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLL-TQINNKFIDT-----PNDFDVVIWVVVSKDMQ-LERIQEKIGERIGS---------FGNK 213 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~---------~~~~ 213 (850)
+-.-++|.|..|+|||+|| -.+.+.. .+ .+.-+.++++.+.+... ..+ +.+.+++-+. ....
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 4457899999999999997 5556653 11 13446788888887644 444 3333333331 1111
Q ss_pred CHH-H-----HHHHHHHHh--ccCcEEEEEcccCC
Q 038480 214 SLE-E-----KASDIFKIL--SKKKFLLLLDDVWE 240 (850)
Q Consensus 214 ~~~-~-----~~~~l~~~l--~~k~~LlVlDdv~~ 240 (850)
... + ..-.+.+++ +++..|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 1 112234444 57899999999953
No 432
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.98 E-value=0.15 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEcCCCChHHHHHHHHHHhh
Q 038480 156 LYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 156 I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|++|+||||+|+.+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999987
No 433
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.98 E-value=0.63 Score=51.17 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhc-----cC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE
Q 038480 136 ESTLDKVWRCFE-----EV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV 188 (850)
Q Consensus 136 ~~~~~~l~~~l~-----~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (850)
...+.++-+||. .+ +.+|+.|+|++|+||||.++.++... .++.+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 345677777876 22 56799999999999999999998875 34556666
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.97 E-value=0.047 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++|.+.|++|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 435
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.97 E-value=0.15 Score=60.65 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 131 TIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
.++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+.+... ..-...+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~---r~~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG---RNNRRMVKMNCAA 437 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC---CCCCCeEEEeccc
Confidence 578988888887766653 2335788999999999999999988651 1122345555554
No 436
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.96 E-value=0.18 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+++.|+.|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999876
No 437
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.95 E-value=0.24 Score=53.99 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHHH--
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEEK-- 218 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~~-- 218 (850)
.-..++|+|..|+|||||++.+.... ..+.++.+-+.+. ....++.+++...-+. ..+....+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998653 2245666666554 3455566665443221 111111111
Q ss_pred ----HHHHHHHh--ccCcEEEEEcccC
Q 038480 219 ----ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 219 ----~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
+..+.+++ +++++|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 12244444 5899999999994
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.95 E-value=0.047 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 439
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.95 E-value=0.27 Score=54.01 Aligned_cols=88 Identities=26% Similarity=0.360 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
+-.-++|.|.+|+|||+|+..+.... . +.+-+.++++-+.+.. ...++.+++...=.. ..+....+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44679999999999999999988775 2 2334788888886653 456666666543211 11111111
Q ss_pred ---HHHHHHHHhc---cCcEEEEEcccC
Q 038480 218 ---KASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
.+-.+.++++ ++++|+++||+-
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1233556664 589999999994
No 440
>PRK14531 adenylate kinase; Provisional
Probab=93.94 E-value=0.15 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..|.|+|++|+||||+++.+...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999886
No 441
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.92 E-value=0.078 Score=50.41 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 132 IVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
++|.+..+.++.+.+.. ....-|.|+|..|+||+.+|+.+.+... ..-...+-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhh
Confidence 46777777777777654 2235567999999999999999998652 1222334555553
No 442
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.089 Score=55.29 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
.+++.+.|.|||||||+|....-... .....++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998666552 12244777777666666666554
No 443
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.92 E-value=0.36 Score=50.27 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
-.++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 45888999999999999999987752 222356888877663 455555555443
No 444
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.23 Score=58.10 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--FGNKSLEEKASDIFKILS 227 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l~ 227 (850)
..|++++|+.|+||||.+.+++..+ ........+..++.... ....+-++...+.++. ....+..++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 4699999999999999999988766 21222234555544321 1244555666666664 22234555444443 344
Q ss_pred cCcEEEEEcccC
Q 038480 228 KKKFLLLLDDVW 239 (850)
Q Consensus 228 ~k~~LlVlDdv~ 239 (850)
++. +|++|-.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 444 67777774
No 445
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.90 E-value=0.058 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 446
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.89 E-value=0.064 Score=57.76 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER-IQEKIGERIGSFGNKSLEEKASDIFKILSK 228 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 228 (850)
....|.|.|+.|+||||+++.+.+.. ....+..++. +.++..... -...+..+- ....+.......++..++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~--evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQR--EVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEcc--ccCCCCcCHHHHHHHhhcc
Confidence 35789999999999999999988765 2233334443 222211100 000000000 0111223456667788888
Q ss_pred CcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhH
Q 038480 229 KKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDV 269 (850)
Q Consensus 229 k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v 269 (850)
.+=.|++|.+.+...+..... ....|..|+.|+-..+.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALT---AAETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcCCCH
Confidence 999999999987655543211 12345556666554333
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.89 E-value=0.042 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 448
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.88 E-value=0.064 Score=53.11 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEE-------EecCCCCHHHH--HHHHHHHhcC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWV-------VVSKDMQLERI--QEKIGERIGS 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~~~~--~~~i~~~l~~ 209 (850)
+..+|.++||+|+||||..+.++... ..+..-..++=. ...-+.++.+. ++++.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 45578899999999999999998876 222222222221 12223345443 4577777665
No 449
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.86 E-value=0.082 Score=56.28 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=40.3
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+||-++.+..+...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999988888777878899999999999999997754
No 450
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.85 E-value=0.37 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 451
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.84 E-value=0.56 Score=53.13 Aligned_cols=245 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhHHhhhccccCCcccCC
Q 038480 5 VSQLEENLASLQTQLQKLIEAKNDVVVRVANAEQQQMRRLNKVQGWISRVGSVEAEVGELIRKSSEEIDKLCLGGYCSKN 84 (850)
Q Consensus 5 ~~~~~~~~~~l~~~l~~L~~~l~~i~~~~~~a~~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~ 84 (850)
+..|.+|.....++-+..... ...+..++.+.....+.|+++-...+... +.
T Consensus 228 l~~y~Gny~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~i~r~~~~~~~~---------------------k~ 279 (530)
T COG0488 228 LTPYKGNYSSYLEQKAERLRQ-------EAAAYEKQQKELAKEQEWIRRGKAAASKA---------------------KK 279 (530)
T ss_pred eeEecCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhccchH---------------------HH
Q ss_pred ccccchhhHHHHHHHHHHHHHHhcCCcceecccCCC-CCccccCCCCcccchhHHHHHHHHHhcc--CCceEEEEEcCCC
Q 038480 85 CQSSHKFGKKVSKMLQVVDILMGEGAFDVVAEKVPQ-PAVDERPLEPTIVGLESTLDKVWRCFEE--VQVGIIGLYGMGG 161 (850)
Q Consensus 85 ~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gG 161 (850)
..+|.+...++.+.............+.+.....+. ....-...+.--++.+.. ..|.+-+.- ..-..|+|+|+.|
T Consensus 280 a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG 358 (530)
T COG0488 280 AKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNG 358 (530)
T ss_pred HHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCC
Q ss_pred ChHHHHHHHHHHhhccCCCCCCEEEEEE-----------------------ecCCC-CH-HHHHHHHHHHhcC-------
Q 038480 162 VGKTTLLTQINNKFIDTPNDFDVVIWVV-----------------------VSKDM-QL-ERIQEKIGERIGS------- 209 (850)
Q Consensus 162 vGKTtLa~~v~~~~~~~~~~f~~~~wv~-----------------------~s~~~-~~-~~~~~~i~~~l~~------- 209 (850)
+|||||.+.+.... ...=..+.|-. +.+.+ +. ..-.+..+..++.
T Consensus 359 ~GKSTLlk~l~g~~---~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~ 435 (530)
T COG0488 359 AGKSTLLKLLAGEL---GPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEK 435 (530)
T ss_pred CCHHHHHHHHhhhc---ccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhC
Q ss_pred --CCCCCHHHHHHHHHHHhccCcEEEEEcccCCccccccc--cccCCCCCCCeEEEEecCchhHhhhccCcceEeccC
Q 038480 210 --FGNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKV--GVPFPTSENASKVVFTTRLVDVCSLMGAQKKFKIEC 283 (850)
Q Consensus 210 --~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 283 (850)
..-+.-+...-.+...+-.++=+||||.--+.-+.+.+ .......-.|+ ||+.|-+........ ..++.+.+
T Consensus 436 ~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 436 PVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred chhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHhhc-ceEEEEcC
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.82 E-value=0.046 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.80 E-value=0.052 Score=49.76 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 454
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.13 Score=48.54 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC--CHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGS-FGNKSLEEKASDIFKILS 227 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~ 227 (850)
-.+++|+|..|.|||||++.+.... ......+++...... ..... ...++. .+-..-+...-.+...+-
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEeeCCHHHHHHHHHHHHHh
Confidence 3689999999999999999998765 223444444322111 11111 111211 111112222233455555
Q ss_pred cCcEEEEEcccCCccc---cccccccCCC-CCCCeEEEEecCchhHhhh
Q 038480 228 KKKFLLLLDDVWERID---LVKVGVPFPT-SENASKVVFTTRLVDVCSL 272 (850)
Q Consensus 228 ~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~iivTtR~~~v~~~ 272 (850)
..+-++++|+.-...+ ...+...+.. ...+..++++|.+.+....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6678899999964322 1122111111 1124568888877666544
No 455
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.80 E-value=0.09 Score=55.97 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=38.2
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+||.+..+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999988777777666778899999999999999997654
No 456
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.79 E-value=0.09 Score=55.10 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=40.9
Q ss_pred CcccchhHHHHHHHHHhcc------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEE------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..|+|.++.++++++.+.. .+-+|+.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999864 356799999999999999999998876
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.77 E-value=0.25 Score=55.00 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS 209 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 209 (850)
..|++++|+.|+||||++.+++... ..+.....+..|.... .....+-++..++.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 4799999999999999999999876 2222222455555432 11233334444555544
No 458
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.77 E-value=0.046 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.041 Score=29.88 Aligned_cols=16 Identities=38% Similarity=0.683 Sum_probs=7.0
Q ss_pred CCCeEeeccccccccc
Q 038480 556 SLQYLNLSETSIKELP 571 (850)
Q Consensus 556 ~L~~L~Ls~~~i~~LP 571 (850)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 460
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.76 E-value=0.061 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 461
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.75 E-value=0.053 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999875
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.74 E-value=0.066 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999886
No 463
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.73 E-value=0.33 Score=53.10 Aligned_cols=86 Identities=23% Similarity=0.352 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHHH-
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEEK- 218 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~~- 218 (850)
.+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+. ....++.+.....-+. ..+......
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 345689999999999999999998865 2356777777654 3455555443322111 111111111
Q ss_pred -----HHHHHHHh--ccCcEEEEEcccC
Q 038480 219 -----ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 219 -----~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
+..+.+++ +++++|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 12234444 5899999999994
No 464
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.27 Score=49.42 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCC----------CC---CEEEEEEecCC----C--CH---------------
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPN----------DF---DVVIWVVVSKD----M--QL--------------- 196 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~s~~----~--~~--------------- 196 (850)
-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.=... + ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 379999999999999999999873210000 01 24556541111 0 11
Q ss_pred -------HHHHHHHHHHhcC-------CCCCCHHHHHH-HHHHHhccCcEEEEEcccCCc------cccccccccCCCCC
Q 038480 197 -------ERIQEKIGERIGS-------FGNKSLEEKAS-DIFKILSKKKFLLLLDDVWER------IDLVKVGVPFPTSE 255 (850)
Q Consensus 197 -------~~~~~~i~~~l~~-------~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~------~~~~~~~~~l~~~~ 255 (850)
.+...+.++.++. -+..+-.+.++ .|.+.|..++=|++||.--.. ....++...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 1334444555544 12233333333 456778888999999987432 223333333322
Q ss_pred CCeEEEEecCchhHhh
Q 038480 256 NASKVVFTTRLVDVCS 271 (850)
Q Consensus 256 ~gs~iivTtR~~~v~~ 271 (850)
.|.-|+++|-+-+...
T Consensus 188 eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 EGKTVLMVTHDLGLVM 203 (254)
T ss_pred CCCEEEEEeCCcHHhH
Confidence 2778999988766543
No 465
>PRK05922 type III secretion system ATPase; Validated
Probab=93.71 E-value=0.41 Score=52.39 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC--------CCCCCHHH--
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS--------FGNKSLEE-- 217 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~--------~~~~~~~~-- 217 (850)
.+-..++|.|..|+|||||++.+.+.. ..+..+.+.+.+ .....+.+.+....... ..+.....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344679999999999999999998764 123333333333 33445555555443322 11111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEcccC
Q 038480 218 ----KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ----~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+-.+.+++ +++++|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 5799999999994
No 466
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.70 E-value=0.055 Score=51.42 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|.|+|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999886
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.67 E-value=0.072 Score=52.93 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=27.0
Q ss_pred HhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 145 CFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 145 ~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.+.++++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444689999999999999999999998875
No 468
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.35 Score=47.21 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHhccCcEEEEEcccCCcccccccc------ccCCCCCCCeEEEEecCchhHhhhccCcceE
Q 038480 220 SDIFKILSKKKFLLLLDDVWERIDLVKVG------VPFPTSENASKVVFTTRLVDVCSLMGAQKKF 279 (850)
Q Consensus 220 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~------~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~ 279 (850)
..+.+.+-=++-+.|||..++--+.+++. ..+. ..|+.++|.|-.+.++.....+..+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34444455578899999998765544431 1122 2366677777778888776554433
No 469
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.4 Score=47.38 Aligned_cols=88 Identities=18% Similarity=0.279 Sum_probs=52.2
Q ss_pred ccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 132 IVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
+=|-.+.++++.+...- +...-|.++|++|.|||-+|++|+|+. ...| +.|-.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf-----irvig------ 244 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVIG------ 244 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeehh------
Confidence 34566667766655421 345568899999999999999999985 3333 32211
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CcEEEEEcccC
Q 038480 199 IQEKIGERIGSFGNKSLEEKASDIFKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 239 (850)
.++++.... ......+.+.+.-+. |-++|+||.++
T Consensus 245 --selvqkyvg----egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 --SELVQKYVG----EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --HHHHHHHhh----hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222111 112234445554454 56899999986
No 470
>PRK13947 shikimate kinase; Provisional
Probab=93.63 E-value=0.056 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 471
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.61 E-value=0.19 Score=55.99 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=51.7
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEE-EEEecCCC-CHHHHHHHHHHHhcC--CCCCC--
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVI-WVVVSKDM-QLERIQEKIGERIGS--FGNKS-- 214 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~--~~~~~-- 214 (850)
+++.+.. ..-.-..|+|.+|+|||||++.+.+... ..+-++.+ .+-|.+.. .+.++.+.+-..+-. .+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 4444433 3445789999999999999999998752 22334433 33444432 333333322101110 11111
Q ss_pred ---HHHHHHHHHHHh--ccCcEEEEEcccC
Q 038480 215 ---LEEKASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 215 ---~~~~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
....+-.+-+++ .++.+||++|++-
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111122233444 6899999999994
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.61 E-value=0.081 Score=54.72 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.-+++.|.|.+|+|||+++.++.... ...+..++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 56799999999999999999999887 344888999988775
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.58 E-value=0.32 Score=50.01 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS--FGNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~l 226 (850)
+..+++++|.+|+||||++..+.... . ..-..+.+++..... ....-++..++.++. ....+..++...+...-
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-H--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH
Confidence 44799999999999999999988775 2 112345566554221 122222333333332 11234444444443322
Q ss_pred c-cCcEEEEEcccC
Q 038480 227 S-KKKFLLLLDDVW 239 (850)
Q Consensus 227 ~-~k~~LlVlDdv~ 239 (850)
+ .+.=++++|..-
T Consensus 151 ~~~~~D~ViIDt~G 164 (270)
T PRK06731 151 EEARVDYILIDTAG 164 (270)
T ss_pred hcCCCCEEEEECCC
Confidence 2 234578889884
No 474
>PRK13949 shikimate kinase; Provisional
Probab=93.57 E-value=0.059 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-|.|+|+.|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 475
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.55 E-value=0.22 Score=44.91 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=46.8
Q ss_pred cccccceEEEeecccccccc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCC
Q 038480 481 VRKWRDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSL 557 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L 557 (850)
+..+.+++.+.+.. .+..+ ..+..+.+|+.+.+..+ +..+....|.+++.|+.+.+.++ +..++. .+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 34455677777663 45555 23567778888888764 77777777888878888888653 444433 45557788
Q ss_pred CeEeeccccccccc
Q 038480 558 QYLNLSETSIKELP 571 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP 571 (850)
+.+++..+ +..++
T Consensus 84 ~~i~~~~~-~~~i~ 96 (129)
T PF13306_consen 84 KNIDIPSN-ITEIG 96 (129)
T ss_dssp CEEEETTT--BEEH
T ss_pred cccccCcc-ccEEc
Confidence 88887654 54444
No 476
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.068 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998887654
No 477
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.55 E-value=0.12 Score=59.07 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.7
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999988887766555667899999999999999998753
No 478
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.53 E-value=0.089 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.389 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997654
No 479
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.092 Score=48.79 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=25.5
Q ss_pred ccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 147 EEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 147 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++..||.++|.+|.||||+|..+....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 33566799999999999999999999987
No 480
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.51 E-value=0.51 Score=50.01 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 140 DKVWRCFE--EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 140 ~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++++.+. ..+..+|+|.|.+|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555443 2467799999999999999999988876
No 481
>PRK14530 adenylate kinase; Provisional
Probab=93.50 E-value=0.063 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.49 E-value=0.057 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 483
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.49 E-value=0.084 Score=55.60 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERI 199 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 199 (850)
+++.+.|-|||||||+|...+-...+ + -..+.-++.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~--G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-R--GKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-T--TS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-C--CCCeeEeecCCCccHHHH
Confidence 68999999999999999887776622 2 233555555444344333
No 484
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.49 E-value=0.17 Score=55.39 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD 183 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 183 (850)
-+-.+|+|.+|.||||+.+.++.+......+++
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 457899999999999999999998644445554
No 485
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.48 E-value=0.43 Score=52.28 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC--CCCC---------EEEEEEecCCCCHHHHHHHHHHHhc-C--------
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP--NDFD---------VVIWVVVSKDMQLERIQEKIGERIG-S-------- 209 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~-------- 209 (850)
+-.-++|.|-+|+|||||+..+.+.. ... ...| .++++.+.+.....+.+.+.+..-+ .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44678999999999999999998775 210 0022 6677778777666665555555544 1
Q ss_pred CCCCCHHH------HHHHHHHHhc---cCcEEEEEcccC
Q 038480 210 FGNKSLEE------KASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
..+...-+ .+..+.++++ ++++|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111111 1223556665 589999999994
No 486
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.93 Score=51.94 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=89.3
Q ss_pred cchhHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CEEEEEEecCCCCHHHHH
Q 038480 133 VGLESTLDKVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~ 200 (850)
.+++..+..+.+.+..+ ...++.++|..|+||||+++.++... ..|+ ++.-.++-+.
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l---g~h~~evdc~el~~~s~-------- 472 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL---GLHLLEVDCYELVAESA-------- 472 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh---CCceEeccHHHHhhccc--------
Confidence 56777777777777542 34578899999999999999999987 2332 1111111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc----cc------cccc----c-ccCCCCCCCeEEEEec-
Q 038480 201 EKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER----ID------LVKV----G-VPFPTSENASKVVFTT- 264 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~------~~~~----~-~~l~~~~~gs~iivTt- 264 (850)
..+...+.....+.-+-.+..|.|-+++-. +. ...+ . ..+....++.-++.||
T Consensus 473 -----------~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 473 -----------SHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS 541 (953)
T ss_pred -----------chhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc
Confidence 111111222222222335566666665411 00 0000 0 1122223344344443
Q ss_pred CchhHhhhccC--cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch
Q 038480 265 RLVDVCSLMGA--QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL 324 (850)
Q Consensus 265 R~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 324 (850)
+.+++...+.. .+.+++..+++++-.++|+......... -..-.+.++++|.|.-+
T Consensus 542 s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n----~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 542 SIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN----QDVNLKQLARKTSGFSF 599 (953)
T ss_pred ccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCH
Confidence 44444333332 3678999999999999999887544311 12234677777877543
No 487
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.44 E-value=0.074 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 488
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.43 E-value=0.2 Score=48.09 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=62.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC---CCCHHHHHHHHHHHh-----cC---CCCCCHHH-
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK---DMQLERIQEKIGERI-----GS---FGNKSLEE- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~---~~~~~~~~- 217 (850)
....|.|+|..|-||||.|.-+.-+. ..+--.+..+..-+ ...-...++.+- .+ +. +...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHH
Confidence 34689999999999999999888876 22222344443322 223333333321 01 00 11111111
Q ss_pred ------HHHHHHHHhccCcE-EEEEcccCCc-----cccccccccCCCCCCCeEEEEecCch
Q 038480 218 ------KASDIFKILSKKKF-LLLLDDVWER-----IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 218 ------~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
.....++.+...+| +||||.+-.. .+.+++...+.....+.-||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12334455545555 9999999532 23344444444445567899999964
No 489
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.43 E-value=0.34 Score=53.26 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------C-CCCCHHH--
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------F-GNKSLEE-- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~-~~~~~~~-- 217 (850)
.-..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-+. . +......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45679999999999999999887643 2244444444433 3455555555444222 1 1111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEcccC
Q 038480 218 ---KASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+..+.+++ +++++|+++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 112244444 5899999999994
No 490
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.40 E-value=0.17 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..|+|++|.||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998777766664
No 491
>PRK08760 replicative DNA helicase; Provisional
Probab=93.39 E-value=5.2 Score=45.16 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.-.++.|-|.+|+|||++|..++... ..+... .++++ |-..+..++...++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~-a~~~g~-~V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYA-AIKSKK-GVAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHH-HHhcCC-ceEEE--eccCCHHHHHHHHHHhh
Confidence 34689999999999999999998775 222222 34444 44555667777776554
No 492
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.38 E-value=0.18 Score=54.11 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
.++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.+.... .. ..++|.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcCc
Confidence 4789888888887777654 457899999999999999999887 22 3466777777666665443
No 493
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.38 E-value=0.2 Score=46.92 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 038480 154 IGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~ 174 (850)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999776
No 494
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.34 E-value=0.1 Score=48.74 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 137 STLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 137 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++++.+.+.+ ++++++|..|||||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346777777765 789999999999999999998874
No 495
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.47 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+-|..+|++|.|||-||++|+...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh
Confidence 358899999999999999999886
No 496
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.30 E-value=0.22 Score=54.97 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC--EEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHH-
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD--VVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEE- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~- 217 (850)
+-.-++|.|..|+|||||+..+.+.. .....+. .++++-+.+. ....++.+++...=.. ..+...-.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 44578999999999999999998875 2221121 5666666554 4566666666543222 11111111
Q ss_pred -----HHHHHHHHhc---cCcEEEEEcccC
Q 038480 218 -----KASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 218 -----~~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
.+..+.++++ ++++||++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1223556665 688999999994
No 497
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.27 E-value=0.46 Score=52.16 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------CCCCCHHH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------FGNKSLEE--- 217 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~~~~~~~~--- 217 (850)
+-.-++|.|.+|+|||||+..+.... . ..+-+.++++-+.+. ....++++++...=.. ..+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45679999999999999999988765 1 122346777777654 4566677766543211 11111111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEcccC
Q 038480 218 ---KASDIFKIL---SKKKFLLLLDDVW 239 (850)
Q Consensus 218 ---~~~~l~~~l---~~k~~LlVlDdv~ 239 (850)
.+-.+.+++ +++++|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 123455666 4689999999994
No 498
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.24 E-value=0.3 Score=53.54 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC--------CCCCCHH-HH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS--------FGNKSLE-EK 218 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~--------~~~~~~~-~~ 218 (850)
..-..++|.|..|+|||||++.+.+.. ..+..+++.+.+ ...+.+.+.+....=.. ....... ..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 345689999999999999999888654 234455555544 44555555554331111 1111111 11
Q ss_pred -----HHHHHHHh--ccCcEEEEEcccC
Q 038480 219 -----ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 219 -----~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
+..+.+++ +++++|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 22244444 5789999999994
No 499
>COG4240 Predicted kinase [General function prediction only]
Probab=93.24 E-value=0.35 Score=46.81 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=51.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASD 221 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~ 221 (850)
++.-+++|.|+-|+||||++..+++.. ..+.. ..++..+...-+-...-.-.++++... .+..+..-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L-~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLL-AAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHH-HHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 456699999999999999999999987 33332 355555554433333334445555322 444556666666
Q ss_pred HHHHhccCc
Q 038480 222 IFKILSKKK 230 (850)
Q Consensus 222 l~~~l~~k~ 230 (850)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 666667764
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=93.23 E-value=0.078 Score=55.60 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=25.1
Q ss_pred ccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 147 EEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 147 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+....+|+|+|+.|+||||||..++...
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44556699999999999999999999885
Done!