Query 038480
Match_columns 850
No_of_seqs 502 out of 3971
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-48 6.4E-53 447.0 19.1 308 130-459 128-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-39 4.6E-44 375.0 18.1 281 131-453 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-37 1.4E-41 391.9 26.6 306 129-459 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.4E-35 3.2E-39 338.9 24.9 301 129-457 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 3.3E-23 1.1E-27 224.7 23.0 280 481-809 40-327 (347)
6 4fmz_A Internalin; leucine ric 99.9 2E-23 6.7E-28 226.5 19.7 290 467-803 48-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 1.1E-22 3.9E-27 241.8 20.3 317 478-825 441-835 (876)
8 1o6v_A Internalin A; bacterial 99.9 5.2E-22 1.8E-26 224.1 24.2 287 471-803 54-364 (466)
9 2id5_A Lingo-1, leucine rich r 99.9 7.4E-22 2.5E-26 223.9 25.3 297 471-803 19-331 (477)
10 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-22 8.8E-27 235.1 22.1 121 678-814 420-542 (606)
11 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6E-27 226.1 19.0 117 480-604 37-159 (457)
12 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6E-27 222.6 18.6 283 482-813 42-338 (390)
13 4eco_A Uncharacterized protein 99.9 1.7E-22 5.7E-27 236.6 17.9 317 478-825 199-595 (636)
14 2id5_A Lingo-1, leucine rich r 99.9 2.3E-21 7.7E-26 219.9 25.7 287 488-811 14-314 (477)
15 2z7x_B TOLL-like receptor 1, v 99.9 9.1E-22 3.1E-26 225.8 22.6 133 469-605 6-150 (520)
16 3v47_A TOLL-like receptor 5B a 99.9 6.4E-22 2.2E-26 223.1 20.8 332 469-821 16-399 (455)
17 3o6n_A APL1; leucine-rich repe 99.9 9.4E-22 3.2E-26 216.8 20.1 275 481-803 65-350 (390)
18 2z63_A TOLL-like receptor 4, v 99.9 1.3E-21 4.5E-26 227.4 21.8 104 709-822 417-523 (570)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-21 9.1E-26 223.9 24.1 135 467-605 35-181 (562)
20 3t6q_A CD180 antigen; protein- 99.9 4.7E-21 1.6E-25 224.3 25.8 157 471-643 20-191 (606)
21 3oja_B Anopheles plasmodium-re 99.9 6.5E-22 2.2E-26 230.3 18.1 279 483-810 49-341 (597)
22 1o6v_A Internalin A; bacterial 99.9 3.3E-21 1.1E-25 217.5 23.2 292 471-812 76-394 (466)
23 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4E-26 228.1 20.1 275 481-803 71-356 (597)
24 4eco_A Uncharacterized protein 99.9 6.3E-22 2.1E-26 231.7 17.8 284 503-812 202-532 (636)
25 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.4E-26 232.8 20.6 282 503-813 444-773 (876)
26 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-21 2E-25 223.6 25.7 134 472-607 20-167 (606)
27 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-21 8.6E-26 216.7 21.5 283 471-802 50-349 (457)
28 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-21 1.5E-25 221.8 21.5 172 472-645 14-210 (549)
29 3rgz_A Protein brassinosteroid 99.9 1.5E-21 5.2E-26 234.0 18.0 122 481-604 196-329 (768)
30 3t6q_A CD180 antigen; protein- 99.9 5.8E-21 2E-25 223.6 22.4 272 508-811 255-541 (606)
31 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-20 4.8E-25 215.9 24.2 116 488-607 3-129 (520)
32 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-21 1.5E-25 206.3 17.5 286 485-803 33-331 (332)
33 1xku_A Decorin; proteoglycan, 99.9 1.3E-20 4.6E-25 202.4 21.1 285 485-802 31-329 (330)
34 2z63_A TOLL-like receptor 4, v 99.9 7.7E-21 2.6E-25 220.9 20.7 131 657-803 396-529 (570)
35 3v47_A TOLL-like receptor 5B a 99.9 1.1E-20 3.9E-25 212.9 19.8 307 479-804 48-407 (455)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.4E-20 1.8E-24 212.9 25.5 120 484-607 30-160 (562)
37 3rgz_A Protein brassinosteroid 99.8 3.2E-21 1.1E-25 231.2 15.5 311 481-811 219-557 (768)
38 2z81_A CD282 antigen, TOLL-lik 99.8 4.5E-20 1.6E-24 213.3 22.6 106 480-586 45-156 (549)
39 1ziw_A TOLL-like receptor 3; i 99.8 4.3E-20 1.5E-24 219.2 22.6 136 470-607 11-159 (680)
40 3j0a_A TOLL-like receptor 5; m 99.8 9.5E-20 3.2E-24 220.7 24.8 138 467-607 8-162 (844)
41 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4.2E-24 219.7 23.1 143 488-645 7-162 (844)
42 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 193.7 17.7 229 507-777 81-310 (328)
43 1ogq_A PGIP-2, polygalacturona 99.8 8.1E-20 2.8E-24 194.3 13.2 246 486-782 51-305 (313)
44 1ziw_A TOLL-like receptor 3; i 99.8 7.7E-19 2.6E-23 208.4 22.9 165 488-668 7-182 (680)
45 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.4E-23 205.9 22.9 135 678-829 441-588 (635)
46 4fcg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 189.9 16.8 222 529-801 79-310 (328)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-19 9.1E-24 190.3 14.6 232 477-750 68-305 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.8E-23 205.5 21.3 134 472-607 40-187 (635)
49 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 9E-23 197.9 23.4 89 485-586 61-149 (622)
50 2ft3_A Biglycan; proteoglycan, 99.8 1E-18 3.5E-23 187.8 16.6 256 484-779 53-331 (332)
51 1xku_A Decorin; proteoglycan, 99.8 3.5E-18 1.2E-22 183.5 20.6 256 484-778 51-329 (330)
52 1jl5_A Outer protein YOPM; leu 99.8 9.6E-18 3.3E-22 187.4 20.6 267 485-803 111-407 (454)
53 2z80_A TOLL-like receptor 2, v 99.8 4.1E-18 1.4E-22 184.8 16.2 185 490-692 36-232 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.3E-24 192.1 5.2 265 487-811 12-281 (317)
55 2z80_A TOLL-like receptor 2, v 99.8 3.8E-18 1.3E-22 185.1 15.3 205 469-692 37-259 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-17 8.7E-22 189.7 22.4 250 486-803 41-295 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.8 6.6E-19 2.3E-23 187.8 8.1 238 508-804 11-249 (317)
58 2z66_A Variable lymphocyte rec 99.8 8.6E-18 2.9E-22 178.4 16.6 232 489-779 11-259 (306)
59 3zyj_A Leucine-rich repeat-con 99.7 1.5E-17 5E-22 186.1 18.6 222 485-747 64-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.7 6.1E-17 2.1E-21 181.8 22.1 241 487-779 56-301 (452)
61 1jl5_A Outer protein YOPM; leu 99.7 7.9E-17 2.7E-21 180.0 20.8 281 485-813 131-437 (454)
62 3zyi_A Leucine-rich repeat-con 99.7 4.8E-17 1.6E-21 182.6 18.4 233 472-747 63-301 (452)
63 3zyj_A Leucine-rich repeat-con 99.7 1.2E-16 4.2E-21 178.7 21.1 243 486-779 44-290 (440)
64 2z66_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 173.0 14.4 227 472-747 16-259 (306)
65 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-17 1.4E-21 171.2 12.3 219 488-748 14-237 (285)
66 3oja_A Leucine-rich immune mol 99.7 3.5E-17 1.2E-21 184.7 12.5 238 504-800 31-270 (487)
67 1wwl_A Monocyte differentiatio 99.7 4.5E-18 1.5E-22 180.9 3.9 246 485-779 43-307 (312)
68 2qen_A Walker-type ATPase; unk 99.7 2.1E-15 7.2E-20 163.3 22.0 290 129-454 11-349 (350)
69 2fna_A Conserved hypothetical 99.6 9.7E-15 3.3E-19 158.5 23.1 285 129-452 12-355 (357)
70 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-15 4.3E-20 159.8 15.5 215 472-726 20-238 (285)
71 1h6u_A Internalin H; cell adhe 99.6 9.3E-16 3.2E-20 162.4 14.3 193 480-724 36-228 (308)
72 3oja_A Leucine-rich immune mol 99.6 7E-16 2.4E-20 174.1 13.7 217 529-805 32-250 (487)
73 1h6u_A Internalin H; cell adhe 99.6 1.6E-15 5.4E-20 160.6 13.8 203 492-747 26-228 (308)
74 1w5s_A Origin recognition comp 99.6 2.6E-15 8.9E-20 166.5 15.4 303 130-449 22-387 (412)
75 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-16 4.8E-21 179.6 4.7 302 482-803 53-409 (461)
76 2z62_A TOLL-like receptor 4, v 99.6 3.2E-15 1.1E-19 155.9 14.4 202 485-725 28-236 (276)
77 1wwl_A Monocyte differentiatio 99.6 3.5E-16 1.2E-20 166.2 6.5 251 504-803 40-307 (312)
78 2z62_A TOLL-like receptor 4, v 99.6 5.7E-15 2E-19 154.0 15.4 213 492-746 14-234 (276)
79 1p9a_G Platelet glycoprotein I 99.6 4.4E-15 1.5E-19 155.6 14.4 201 481-724 6-206 (290)
80 2o6q_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 152.2 15.9 199 486-724 17-216 (270)
81 1z7x_W Ribonuclease inhibitor; 99.6 5.3E-17 1.8E-21 183.1 -0.8 195 486-692 4-237 (461)
82 2xwt_C Thyrotropin receptor; s 99.6 6.6E-15 2.3E-19 149.8 14.5 97 494-606 20-118 (239)
83 2xwt_C Thyrotropin receptor; s 99.6 2.8E-15 9.6E-20 152.6 11.6 185 475-692 23-215 (239)
84 3rfs_A Internalin B, repeat mo 99.6 4.2E-15 1.4E-19 154.5 12.5 205 479-754 35-240 (272)
85 3ogk_B Coronatine-insensitive 99.6 8.1E-16 2.8E-20 179.3 6.4 298 483-807 162-527 (592)
86 4ay9_X Follicle-stimulating ho 99.6 2.6E-14 8.8E-19 154.4 17.5 103 489-606 13-117 (350)
87 3rfs_A Internalin B, repeat mo 99.6 3.1E-15 1.1E-19 155.4 9.4 225 486-792 20-246 (272)
88 3ogk_B Coronatine-insensitive 99.6 6.6E-16 2.3E-20 180.1 4.0 289 482-802 189-548 (592)
89 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.3E-19 155.5 14.5 231 471-745 17-255 (350)
90 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.7E-20 164.5 4.3 60 507-568 70-131 (336)
91 2ca6_A RAN GTPase-activating p 99.5 1.3E-15 4.5E-20 167.2 4.0 195 483-692 30-254 (386)
92 2ast_B S-phase kinase-associat 99.5 3.2E-15 1.1E-19 160.9 6.9 220 509-778 49-282 (336)
93 2o6q_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 144.9 16.5 197 508-747 17-216 (270)
94 2p1m_B Transport inhibitor res 99.5 2.3E-15 7.9E-20 175.6 4.8 295 483-804 154-518 (594)
95 1p9a_G Platelet glycoprotein I 99.5 6.8E-14 2.3E-18 146.5 14.9 199 503-747 6-206 (290)
96 1h6t_A Internalin B; cell adhe 99.5 3.7E-14 1.3E-18 148.6 12.6 171 479-692 40-210 (291)
97 4glp_A Monocyte differentiatio 99.5 3.4E-15 1.1E-19 158.5 4.5 54 713-778 251-304 (310)
98 1h6t_A Internalin B; cell adhe 99.5 2.7E-14 9.3E-19 149.7 7.8 186 487-724 26-211 (291)
99 1m9s_A Internalin B; cell inva 99.5 3.6E-14 1.2E-18 163.2 9.4 77 491-571 27-103 (605)
100 1m9s_A Internalin B; cell inva 99.5 7.4E-14 2.5E-18 160.6 11.9 165 479-668 37-208 (605)
101 2ca6_A RAN GTPase-activating p 99.5 8.9E-15 3E-19 160.6 2.7 233 504-779 29-314 (386)
102 3goz_A Leucine-rich repeat-con 99.5 3.5E-14 1.2E-18 154.2 6.8 262 490-779 3-295 (362)
103 3m19_A Variable lymphocyte rec 99.4 8.3E-13 2.8E-17 135.3 14.9 105 486-606 15-120 (251)
104 4ezg_A Putative uncharacterize 99.4 3.5E-13 1.2E-17 132.4 11.1 121 482-605 41-171 (197)
105 4glp_A Monocyte differentiatio 99.4 2.4E-13 8.2E-18 144.2 9.7 200 486-724 92-305 (310)
106 2p1m_B Transport inhibitor res 99.4 6.9E-15 2.4E-19 171.5 -3.3 294 483-802 182-541 (594)
107 3m19_A Variable lymphocyte rec 99.4 2.2E-12 7.7E-17 132.0 14.3 157 471-643 22-191 (251)
108 2v1u_A Cell division control p 99.4 1.4E-11 4.9E-16 135.0 21.7 286 130-438 19-351 (387)
109 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.9E-17 135.0 11.6 122 478-605 34-162 (263)
110 2qby_B CDC6 homolog 3, cell di 99.4 2.3E-11 7.7E-16 133.3 22.7 286 130-438 20-339 (384)
111 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4E-18 150.1 4.1 237 484-747 21-295 (362)
112 1xeu_A Internalin C; cellular 99.4 3.3E-13 1.1E-17 139.0 6.0 167 483-693 17-183 (263)
113 3cvr_A Invasion plasmid antige 99.3 2.8E-12 9.7E-17 145.7 13.0 186 486-752 60-246 (571)
114 4ezg_A Putative uncharacterize 99.3 3.3E-12 1.1E-16 125.4 11.3 134 470-605 51-193 (197)
115 3cvr_A Invasion plasmid antige 99.3 4.1E-12 1.4E-16 144.4 13.4 171 467-692 63-240 (571)
116 3e6j_A Variable lymphocyte rec 99.3 6.3E-12 2.2E-16 126.6 13.2 101 485-586 40-143 (229)
117 2v9t_B SLIT homolog 2 protein 99.3 4.2E-12 1.4E-16 126.9 11.1 138 489-642 15-163 (220)
118 2qby_A CDC6 homolog 1, cell di 99.3 1.6E-11 5.4E-16 134.6 16.4 288 130-437 20-347 (386)
119 1fnn_A CDC6P, cell division co 99.3 8.1E-11 2.8E-15 129.1 21.4 287 130-438 17-351 (389)
120 2o6s_A Variable lymphocyte rec 99.3 7.5E-12 2.6E-16 124.1 11.0 65 507-572 28-93 (208)
121 2v9t_B SLIT homolog 2 protein 99.3 1.3E-11 4.6E-16 123.2 12.0 134 471-606 19-165 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 9.5E-12 3.3E-16 124.3 10.6 140 488-643 14-165 (220)
123 3e6j_A Variable lymphocyte rec 99.3 2.2E-11 7.4E-16 122.6 12.3 117 487-605 21-147 (229)
124 2xot_A Amphoterin-induced prot 99.3 9.6E-12 3.3E-16 134.7 10.0 118 488-607 21-150 (361)
125 2v70_A SLIT-2, SLIT homolog 2 99.2 1.7E-11 5.9E-16 122.5 10.8 133 472-606 20-166 (220)
126 2o6s_A Variable lymphocyte rec 99.2 2.4E-11 8.1E-16 120.4 11.7 102 484-586 27-132 (208)
127 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 118.0 8.4 99 485-586 24-128 (168)
128 1a9n_A U2A', U2A'; complex (nu 99.2 8.3E-12 2.8E-16 120.1 7.1 139 479-646 13-155 (176)
129 1dce_A Protein (RAB geranylger 99.2 2.6E-13 9E-18 155.1 -5.5 119 658-798 442-566 (567)
130 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.3E-16 113.2 8.2 125 485-638 17-147 (149)
131 2xot_A Amphoterin-induced prot 99.2 5.7E-11 1.9E-15 128.6 11.0 157 471-643 26-201 (361)
132 1a9n_A U2A', U2A'; complex (nu 99.2 4.5E-11 1.5E-15 114.9 9.1 117 469-586 25-148 (176)
133 1njg_A DNA polymerase III subu 99.2 2.3E-10 8E-15 116.4 14.7 192 130-332 23-230 (250)
134 2je0_A Acidic leucine-rich nuc 99.2 7.9E-11 2.7E-15 109.7 10.0 106 480-586 37-148 (149)
135 2chg_A Replication factor C sm 99.1 3.7E-10 1.2E-14 113.2 13.6 184 130-330 17-204 (226)
136 2ell_A Acidic leucine-rich nuc 99.1 1.8E-10 6.1E-15 109.8 10.4 105 480-585 44-154 (168)
137 1w8a_A SLIT protein; signaling 99.1 1.7E-10 5.9E-15 112.5 10.3 97 488-586 11-110 (192)
138 2o6r_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 107.2 11.1 94 488-583 10-105 (177)
139 1dce_A Protein (RAB geranylger 99.0 2.1E-10 7.2E-15 131.1 8.7 97 486-585 442-540 (567)
140 2wfh_A SLIT homolog 2 protein 99.0 9.5E-10 3.3E-14 107.1 11.1 93 488-583 13-107 (193)
141 1w8a_A SLIT protein; signaling 99.0 7.2E-10 2.5E-14 108.0 9.1 119 471-606 16-139 (192)
142 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4E-14 106.5 10.1 118 471-605 18-138 (193)
143 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 104.0 10.7 118 473-606 17-137 (177)
144 3sb4_A Hypothetical leucine ri 99.0 2.1E-09 7E-14 114.7 12.0 228 521-798 83-327 (329)
145 4b8c_D Glucose-repressible alc 99.0 7.6E-10 2.6E-14 130.6 9.3 81 504-586 221-301 (727)
146 4b8c_D Glucose-repressible alc 99.0 7.5E-10 2.6E-14 130.7 8.8 105 480-586 219-324 (727)
147 2r9u_A Variable lymphocyte rec 98.9 1.5E-09 5.2E-14 103.7 9.1 103 487-606 14-118 (174)
148 1sxj_B Activator 1 37 kDa subu 98.9 2.3E-09 7.8E-14 114.1 10.9 184 130-331 21-211 (323)
149 1ds9_A Outer arm dynein; leuci 98.9 3.2E-11 1.1E-15 118.5 -3.5 111 503-645 44-154 (198)
150 1hqc_A RUVB; extended AAA-ATPa 98.9 1.1E-08 3.6E-13 109.0 15.8 271 130-437 12-324 (324)
151 3g39_A Variable lymphocyte rec 98.9 2E-09 6.9E-14 102.5 8.8 103 487-606 11-115 (170)
152 3qfl_A MLA10; coiled-coil, (CC 98.9 7.1E-09 2.4E-13 90.2 10.3 66 9-74 18-84 (115)
153 1ds9_A Outer arm dynein; leuci 98.9 2.5E-10 8.5E-15 112.0 0.3 129 526-688 43-180 (198)
154 2r9u_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 100.3 8.7 108 469-578 18-128 (174)
155 3sb4_A Hypothetical leucine ri 98.8 1.4E-08 4.8E-13 108.2 12.2 245 484-775 48-328 (329)
156 4fdw_A Leucine rich hypothetic 98.8 3.4E-07 1.1E-11 99.8 20.4 234 485-778 113-355 (401)
157 3g39_A Variable lymphocyte rec 98.8 2E-08 6.9E-13 95.4 9.4 103 471-575 17-122 (170)
158 1iqp_A RFCS; clamp loader, ext 98.7 1.5E-08 5E-13 108.0 9.1 184 130-331 25-213 (327)
159 4fdw_A Leucine rich hypothetic 98.7 3.8E-07 1.3E-11 99.4 19.2 238 481-777 132-379 (401)
160 3te6_A Regulatory protein SIR3 98.7 9.6E-08 3.3E-12 99.1 13.5 167 131-298 21-212 (318)
161 2chq_A Replication factor C sm 98.6 2.5E-07 8.6E-12 98.0 13.9 179 130-329 17-203 (319)
162 1jr3_A DNA polymerase III subu 98.6 4.6E-07 1.6E-11 98.3 14.2 189 130-330 16-221 (373)
163 2ifg_A High affinity nerve gro 98.6 9.9E-08 3.4E-12 102.5 8.7 86 489-575 12-100 (347)
164 3bos_A Putative DNA replicatio 98.5 1.9E-07 6.5E-12 94.4 7.4 171 131-330 29-217 (242)
165 1jbk_A CLPB protein; beta barr 98.4 2E-07 6.8E-12 90.5 6.9 46 130-175 22-67 (195)
166 3h4m_A Proteasome-activating n 98.4 1.2E-06 4E-11 91.1 12.2 176 130-328 17-229 (285)
167 4fs7_A Uncharacterized protein 98.4 5.5E-06 1.9E-10 90.4 17.4 36 503-539 67-102 (394)
168 2ifg_A High affinity nerve gro 98.4 4.6E-07 1.6E-11 97.2 8.1 96 474-570 20-118 (347)
169 3un9_A NLR family member X1; l 98.4 6.3E-08 2.1E-12 104.5 1.0 101 485-586 72-191 (372)
170 1sxj_D Activator 1 41 kDa subu 98.3 1.5E-06 5E-11 93.5 10.8 193 130-330 37-235 (353)
171 2z4s_A Chromosomal replication 98.3 3.4E-06 1.2E-10 92.9 13.5 179 132-327 107-303 (440)
172 3pfi_A Holliday junction ATP-d 98.3 1.6E-05 5.4E-10 84.8 17.5 170 130-329 29-226 (338)
173 1d2n_A N-ethylmaleimide-sensit 98.3 1.8E-05 6.1E-10 81.4 17.3 191 131-352 34-264 (272)
174 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.6E-10 86.7 17.9 274 480-800 66-374 (394)
175 3pvs_A Replication-associated 98.3 9.6E-06 3.3E-10 89.1 16.0 175 130-329 26-214 (447)
176 4gt6_A Cell surface protein; l 98.3 4.2E-05 1.4E-09 83.3 20.7 114 677-811 260-386 (394)
177 1sxj_E Activator 1 40 kDa subu 98.2 3.1E-06 1.1E-10 91.0 10.7 195 130-330 14-237 (354)
178 1sxj_A Activator 1 95 kDa subu 98.2 3.8E-06 1.3E-10 94.8 11.4 188 130-331 39-254 (516)
179 3un9_A NLR family member X1; l 98.2 4.1E-07 1.4E-11 98.1 2.8 101 485-586 101-219 (372)
180 1xwi_A SKD1 protein; VPS4B, AA 98.2 9.4E-05 3.2E-09 77.8 20.7 180 130-331 12-224 (322)
181 2qz4_A Paraplegin; AAA+, SPG7, 98.2 9.7E-06 3.3E-10 82.9 12.8 179 130-329 6-221 (262)
182 3eie_A Vacuolar protein sortin 98.2 3.4E-05 1.2E-09 81.4 16.5 179 130-331 18-229 (322)
183 3d8b_A Fidgetin-like protein 1 98.1 4.3E-05 1.5E-09 81.8 17.2 179 130-331 84-296 (357)
184 3syl_A Protein CBBX; photosynt 98.1 7.4E-06 2.5E-10 86.1 10.8 150 131-299 32-219 (309)
185 2qp9_X Vacuolar protein sortin 98.1 5.1E-05 1.8E-09 81.0 16.9 179 130-330 51-261 (355)
186 3u61_B DNA polymerase accessor 98.1 1.4E-05 4.8E-10 84.6 12.5 170 130-327 26-213 (324)
187 3uk6_A RUVB-like 2; hexameric 98.1 1.6E-05 5.4E-10 85.9 12.7 188 130-328 44-301 (368)
188 3vfd_A Spastin; ATPase, microt 98.1 0.00012 4E-09 79.5 19.2 179 130-330 115-326 (389)
189 3cf0_A Transitional endoplasmi 98.0 0.00011 3.7E-09 76.6 17.3 173 130-325 15-223 (301)
190 1sxj_C Activator 1 40 kDa subu 98.0 2.6E-05 8.8E-10 83.1 12.8 173 131-327 26-209 (340)
191 1a5t_A Delta prime, HOLB; zinc 98.0 8.5E-05 2.9E-09 78.7 15.9 171 136-330 8-205 (334)
192 3b9p_A CG5977-PA, isoform A; A 98.0 0.00023 7.8E-09 74.1 18.8 178 130-330 21-233 (297)
193 2zan_A Vacuolar protein sortin 98.0 0.00019 6.5E-09 79.0 18.6 181 130-331 134-346 (444)
194 2p65_A Hypothetical protein PF 98.0 1.3E-05 4.3E-10 77.1 7.9 46 130-175 22-67 (187)
195 1l8q_A Chromosomal replication 97.9 5E-05 1.7E-09 80.3 12.9 166 139-326 23-204 (324)
196 3e4g_A ATP synthase subunit S, 97.9 3.8E-06 1.3E-10 78.5 3.3 39 769-807 115-154 (176)
197 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 78.3 3.4 40 737-783 115-154 (176)
198 2ra8_A Uncharacterized protein 97.9 1.1E-05 3.7E-10 86.1 5.7 141 525-693 166-318 (362)
199 3pxg_A Negative regulator of g 97.8 0.00012 4E-09 81.3 13.4 149 131-299 181-340 (468)
200 4b4t_J 26S protease regulatory 97.8 0.00043 1.5E-08 73.6 16.2 169 131-323 149-354 (405)
201 4gt6_A Cell surface protein; l 97.8 0.0007 2.4E-08 73.6 18.5 121 656-800 264-386 (394)
202 2gno_A DNA polymerase III, gam 97.8 0.00012 4.1E-09 76.0 11.7 147 134-297 1-152 (305)
203 1in4_A RUVB, holliday junction 97.8 0.00035 1.2E-08 73.9 15.4 169 131-329 26-222 (334)
204 3rw6_A Nuclear RNA export fact 97.7 3.7E-05 1.3E-09 77.7 6.7 78 505-584 168-257 (267)
205 3n70_A Transport activator; si 97.7 2.8E-05 9.5E-10 71.3 5.2 45 131-175 2-48 (145)
206 4b4t_L 26S protease subunit RP 97.7 0.00054 1.8E-08 74.1 15.7 169 131-323 182-387 (437)
207 2ra8_A Uncharacterized protein 97.7 3.9E-05 1.3E-09 81.8 6.3 140 483-645 170-321 (362)
208 1qvr_A CLPB protein; coiled co 97.7 0.00011 3.8E-09 88.2 10.8 154 131-297 171-345 (854)
209 1lv7_A FTSH; alpha/beta domain 97.6 0.00091 3.1E-08 67.8 16.0 175 130-327 12-222 (257)
210 2r62_A Cell division protease 97.6 6E-05 2E-09 77.2 6.5 172 130-324 11-219 (268)
211 1io0_A Tropomodulin; LRR prote 97.6 4.5E-05 1.5E-09 73.1 5.2 116 504-645 33-165 (185)
212 4b4t_H 26S protease regulatory 97.6 0.0013 4.3E-08 70.9 16.8 170 131-323 210-415 (467)
213 4b4t_I 26S protease regulatory 97.6 0.0011 3.9E-08 70.6 16.1 169 131-323 183-388 (437)
214 4h09_A Hypothetical leucine ri 97.6 0.0037 1.3E-07 67.4 20.9 284 483-799 44-340 (379)
215 3ec2_A DNA replication protein 97.6 4E-05 1.4E-09 73.2 4.5 115 135-265 19-141 (180)
216 3hu3_A Transitional endoplasmi 97.6 0.00079 2.7E-08 74.6 15.2 175 131-328 205-413 (489)
217 4b4t_M 26S protease regulatory 97.5 0.00053 1.8E-08 74.1 12.5 169 131-323 182-387 (434)
218 3pxi_A Negative regulator of g 97.5 0.00056 1.9E-08 81.1 13.5 149 131-299 181-340 (758)
219 2ce7_A Cell division protein F 97.5 0.00089 3E-08 73.6 13.8 171 130-323 16-221 (476)
220 4b4t_K 26S protease regulatory 97.5 0.0017 6E-08 69.9 15.9 170 131-323 173-379 (428)
221 1ofh_A ATP-dependent HSL prote 97.5 0.00066 2.3E-08 71.0 12.2 46 130-175 15-74 (310)
222 3rw6_A Nuclear RNA export fact 97.5 2.7E-05 9.2E-10 78.7 1.3 113 503-637 137-257 (267)
223 1io0_A Tropomodulin; LRR prote 97.4 9.1E-05 3.1E-09 71.0 4.7 124 524-668 29-162 (185)
224 2w58_A DNAI, primosome compone 97.4 0.00028 9.7E-09 68.6 8.1 87 137-240 36-126 (202)
225 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0013 4.3E-08 78.2 15.2 155 130-297 186-362 (758)
226 4fcw_A Chaperone protein CLPB; 97.4 0.00033 1.1E-08 73.4 8.8 60 131-193 18-86 (311)
227 4h09_A Hypothetical leucine ri 97.3 0.012 4.1E-07 63.3 20.7 260 479-785 63-348 (379)
228 2kjq_A DNAA-related protein; s 97.2 0.00016 5.3E-09 66.4 3.6 40 150-192 35-74 (149)
229 2bjv_A PSP operon transcriptio 97.2 0.00061 2.1E-08 69.5 8.4 60 131-193 7-68 (265)
230 2c9o_A RUVB-like 1; hexameric 97.2 0.0019 6.5E-08 71.4 12.7 46 130-175 37-87 (456)
231 2x8a_A Nuclear valosin-contain 97.0 0.0092 3.2E-07 60.8 14.6 146 131-298 11-192 (274)
232 3pxi_A Negative regulator of g 97.0 0.00063 2.2E-08 80.6 6.5 146 130-296 491-674 (758)
233 1ojl_A Transcriptional regulat 97.0 0.00095 3.2E-08 69.4 7.1 45 131-175 3-49 (304)
234 3cf2_A TER ATPase, transitiona 97.0 0.0022 7.6E-08 74.6 10.8 171 131-324 205-408 (806)
235 3t15_A Ribulose bisphosphate c 96.9 0.0061 2.1E-07 62.9 12.8 26 150-175 35-60 (293)
236 3m6a_A ATP-dependent protease 96.9 0.0053 1.8E-07 69.2 12.5 153 131-297 82-266 (543)
237 1iy2_A ATP-dependent metallopr 96.9 0.013 4.6E-07 59.8 14.6 170 130-323 40-245 (278)
238 2dhr_A FTSH; AAA+ protein, hex 96.8 0.013 4.3E-07 64.8 14.5 167 130-323 31-236 (499)
239 1ixz_A ATP-dependent metallopr 96.7 0.033 1.1E-06 55.9 15.9 170 130-323 16-221 (254)
240 1ypw_A Transitional endoplasmi 96.7 0.0085 2.9E-07 70.9 12.7 169 131-323 205-407 (806)
241 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0018 6.2E-08 66.3 5.3 69 151-240 123-193 (331)
242 2cvh_A DNA repair and recombin 96.6 0.0059 2E-07 59.9 9.0 83 150-239 19-115 (220)
243 3hr8_A Protein RECA; alpha and 96.5 0.0053 1.8E-07 64.6 8.7 83 150-240 60-150 (356)
244 3lw7_A Adenylate kinase relate 96.4 0.016 5.3E-07 54.4 10.7 23 152-175 2-24 (179)
245 2zr9_A Protein RECA, recombina 96.2 0.0095 3.2E-07 62.9 8.7 82 150-239 60-149 (349)
246 3io5_A Recombination and repai 96.2 0.011 3.8E-07 60.3 8.4 82 153-240 30-122 (333)
247 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0061 2.1E-07 72.2 7.7 58 130-193 458-524 (758)
248 1jr3_D DNA polymerase III, del 96.2 0.029 9.9E-07 59.3 12.2 163 143-328 10-183 (343)
249 1u94_A RECA protein, recombina 96.2 0.0098 3.3E-07 62.8 8.2 82 150-239 62-151 (356)
250 1qvr_A CLPB protein; coiled co 96.2 0.0054 1.9E-07 73.5 7.1 45 131-175 559-612 (854)
251 1xp8_A RECA protein, recombina 96.2 0.011 3.8E-07 62.6 8.7 82 150-239 73-162 (366)
252 1n0w_A DNA repair protein RAD5 96.1 0.018 6.1E-07 57.4 9.6 88 150-239 23-129 (243)
253 2z43_A DNA repair and recombin 96.1 0.019 6.4E-07 60.2 9.8 87 150-238 106-212 (324)
254 1v5w_A DMC1, meiotic recombina 95.9 0.039 1.3E-06 58.2 11.6 57 150-208 121-181 (343)
255 2qgz_A Helicase loader, putati 95.8 0.011 3.8E-07 61.3 6.7 41 135-175 133-176 (308)
256 3dm5_A SRP54, signal recogniti 95.8 0.052 1.8E-06 58.5 11.9 26 150-175 99-124 (443)
257 3co5_A Putative two-component 95.7 0.0027 9.1E-08 57.7 1.4 45 131-175 5-51 (143)
258 1g5t_A COB(I)alamin adenosyltr 95.7 0.0043 1.5E-07 58.7 2.7 113 152-267 29-163 (196)
259 1rz3_A Hypothetical protein rb 95.5 0.014 4.7E-07 56.4 5.6 42 134-175 2-46 (201)
260 2xxa_A Signal recognition part 95.5 0.085 2.9E-06 57.2 12.3 87 150-238 99-192 (433)
261 3ice_A Transcription terminati 95.5 0.063 2.2E-06 56.2 10.6 94 141-239 163-271 (422)
262 2i1q_A DNA repair and recombin 95.4 0.034 1.1E-06 58.2 8.4 57 150-208 97-167 (322)
263 1j8m_F SRP54, signal recogniti 95.3 0.063 2.1E-06 55.1 10.0 85 151-238 98-189 (297)
264 3sr0_A Adenylate kinase; phosp 95.3 0.049 1.7E-06 52.5 8.6 72 153-239 2-84 (206)
265 3lda_A DNA repair protein RAD5 95.3 0.077 2.6E-06 56.8 10.9 58 150-208 177-237 (400)
266 4a74_A DNA repair and recombin 95.2 0.073 2.5E-06 52.3 10.1 46 150-196 24-73 (231)
267 1pzn_A RAD51, DNA repair and r 95.2 0.049 1.7E-06 57.4 9.0 89 150-240 130-242 (349)
268 3c8u_A Fructokinase; YP_612366 95.1 0.018 6.3E-07 55.9 5.0 39 137-175 6-46 (208)
269 2px0_A Flagellar biosynthesis 95.1 0.055 1.9E-06 55.6 8.7 85 150-238 104-191 (296)
270 3kl4_A SRP54, signal recogniti 95.0 0.1 3.6E-06 56.2 11.1 26 150-175 96-121 (433)
271 3bh0_A DNAB-like replicative h 95.0 0.099 3.4E-06 54.3 10.7 53 150-207 67-119 (315)
272 1sky_E F1-ATPase, F1-ATP synth 95.0 0.099 3.4E-06 56.6 10.6 86 152-239 152-255 (473)
273 1qhx_A CPT, protein (chloramph 94.9 0.014 4.9E-07 54.9 3.6 24 152-175 4-27 (178)
274 2ffh_A Protein (FFH); SRP54, s 94.9 0.091 3.1E-06 56.6 10.1 85 150-238 97-189 (425)
275 2b8t_A Thymidine kinase; deoxy 94.9 0.0065 2.2E-07 59.4 1.1 109 150-267 11-126 (223)
276 1vma_A Cell division protein F 94.9 0.065 2.2E-06 55.2 8.6 86 150-239 103-196 (306)
277 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.063 2.2E-06 52.9 8.4 47 151-202 23-69 (235)
278 3cf2_A TER ATPase, transitiona 94.9 0.017 5.8E-07 67.3 4.7 170 130-322 477-682 (806)
279 3kb2_A SPBC2 prophage-derived 94.8 0.016 5.4E-07 54.3 3.6 24 152-175 2-25 (173)
280 2hf9_A Probable hydrogenase ni 94.6 0.031 1.1E-06 54.9 5.4 39 137-175 24-62 (226)
281 2r44_A Uncharacterized protein 94.6 0.022 7.5E-07 59.9 4.3 44 130-175 27-70 (331)
282 3vaa_A Shikimate kinase, SK; s 94.5 0.021 7.2E-07 55.0 3.8 26 150-175 24-49 (199)
283 2ga8_A Hypothetical 39.9 kDa p 94.5 0.04 1.4E-06 57.3 5.9 43 133-175 2-48 (359)
284 2ck3_D ATP synthase subunit be 94.4 0.27 9.3E-06 53.0 12.4 96 142-239 143-263 (482)
285 3e70_C DPA, signal recognition 94.4 0.26 9E-06 51.2 11.9 58 149-209 127-185 (328)
286 3trf_A Shikimate kinase, SK; a 94.4 0.023 7.9E-07 53.9 3.6 25 151-175 5-29 (185)
287 2orw_A Thymidine kinase; TMTK, 94.4 0.0018 6.1E-08 61.6 -4.3 24 152-175 4-27 (184)
288 2r6a_A DNAB helicase, replicat 94.4 1.1 3.8E-05 49.0 17.6 51 150-204 202-252 (454)
289 1kgd_A CASK, peripheral plasma 94.3 0.023 7.9E-07 53.7 3.5 24 152-175 6-29 (180)
290 1ly1_A Polynucleotide kinase; 94.3 0.024 8.3E-07 53.4 3.6 22 152-173 3-24 (181)
291 1zp6_A Hypothetical protein AT 94.3 0.023 7.8E-07 54.2 3.3 26 150-175 8-33 (191)
292 1kag_A SKI, shikimate kinase I 94.3 0.02 7E-07 53.5 2.9 24 152-175 5-28 (173)
293 2dr3_A UPF0273 protein PH0284; 94.2 0.13 4.3E-06 51.2 9.0 40 151-193 23-62 (247)
294 2wsm_A Hydrogenase expression/ 94.2 0.034 1.2E-06 54.4 4.6 42 134-175 13-54 (221)
295 3uie_A Adenylyl-sulfate kinase 94.2 0.03 1E-06 53.9 4.0 27 149-175 23-49 (200)
296 1odf_A YGR205W, hypothetical 3 94.1 0.046 1.6E-06 55.9 5.4 27 149-175 29-55 (290)
297 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.034 1.2E-06 61.5 4.7 44 130-175 22-65 (500)
298 1ls1_A Signal recognition part 94.1 0.16 5.4E-06 52.1 9.5 86 150-238 97-189 (295)
299 1nks_A Adenylate kinase; therm 94.1 0.028 9.7E-07 53.6 3.7 24 152-175 2-25 (194)
300 4a1f_A DNAB helicase, replicat 94.1 0.17 5.7E-06 52.7 9.5 54 150-208 45-98 (338)
301 3hws_A ATP-dependent CLP prote 94.0 0.042 1.4E-06 58.5 5.2 45 131-175 16-75 (363)
302 3l0o_A Transcription terminati 94.0 0.13 4.5E-06 53.7 8.5 53 140-193 163-216 (427)
303 3t61_A Gluconokinase; PSI-biol 94.0 0.024 8.2E-07 54.7 2.9 25 151-175 18-42 (202)
304 3iij_A Coilin-interacting nucl 94.0 0.026 9.1E-07 53.2 3.2 25 151-175 11-35 (180)
305 4eun_A Thermoresistant glucoki 94.0 0.032 1.1E-06 53.7 3.8 27 149-175 27-53 (200)
306 1um8_A ATP-dependent CLP prote 94.0 0.047 1.6E-06 58.5 5.4 45 131-175 22-96 (376)
307 1kht_A Adenylate kinase; phosp 94.0 0.031 1.1E-06 53.2 3.6 24 152-175 4-27 (192)
308 3cmu_A Protein RECA, recombina 94.0 0.089 3E-06 67.0 8.5 82 150-239 1426-1515(2050)
309 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 53.1 3.8 25 151-175 5-29 (193)
310 1zuh_A Shikimate kinase; alpha 93.9 0.033 1.1E-06 51.9 3.6 26 150-175 6-31 (168)
311 2yvu_A Probable adenylyl-sulfa 93.9 0.037 1.3E-06 52.5 4.0 26 150-175 12-37 (186)
312 2ze6_A Isopentenyl transferase 93.8 0.034 1.2E-06 55.8 3.8 24 152-175 2-25 (253)
313 1ex7_A Guanylate kinase; subst 93.8 0.024 8.1E-07 53.6 2.3 24 152-175 2-25 (186)
314 1knq_A Gluconate kinase; ALFA/ 93.8 0.036 1.2E-06 52.0 3.6 25 151-175 8-32 (175)
315 1via_A Shikimate kinase; struc 93.8 0.03 1E-06 52.5 3.0 24 152-175 5-28 (175)
316 1g8p_A Magnesium-chelatase 38 93.8 0.025 8.7E-07 59.9 2.7 45 131-175 25-69 (350)
317 2jaq_A Deoxyguanosine kinase; 93.8 0.035 1.2E-06 53.5 3.6 23 153-175 2-24 (205)
318 3umf_A Adenylate kinase; rossm 93.7 0.041 1.4E-06 53.5 3.9 27 149-175 27-53 (217)
319 1ypw_A Transitional endoplasmi 93.7 0.0059 2E-07 72.3 -2.5 151 131-300 478-664 (806)
320 3tqc_A Pantothenate kinase; bi 93.7 0.2 6.8E-06 51.7 9.3 43 133-175 70-116 (321)
321 2qor_A Guanylate kinase; phosp 93.7 0.032 1.1E-06 53.9 3.1 26 150-175 11-36 (204)
322 3tr0_A Guanylate kinase, GMP k 93.7 0.036 1.2E-06 53.5 3.5 25 151-175 7-31 (205)
323 3tau_A Guanylate kinase, GMP k 93.7 0.039 1.3E-06 53.5 3.7 26 150-175 7-32 (208)
324 2c95_A Adenylate kinase 1; tra 93.7 0.04 1.4E-06 52.7 3.7 26 150-175 8-33 (196)
325 3rfe_A Platelet glycoprotein I 93.6 0.079 2.7E-06 46.8 5.3 34 508-541 32-65 (130)
326 1y63_A LMAJ004144AAA protein; 93.6 0.041 1.4E-06 52.1 3.7 25 150-174 9-33 (184)
327 1tev_A UMP-CMP kinase; ploop, 93.6 0.042 1.4E-06 52.5 3.8 25 151-175 3-27 (196)
328 1ye8_A Protein THEP1, hypothet 93.6 0.04 1.4E-06 51.8 3.5 23 153-175 2-24 (178)
329 2j37_W Signal recognition part 93.6 0.37 1.2E-05 53.1 11.6 26 150-175 100-125 (504)
330 2iyv_A Shikimate kinase, SK; t 93.6 0.031 1.1E-06 52.9 2.7 24 152-175 3-26 (184)
331 2plr_A DTMP kinase, probable t 93.5 0.092 3.1E-06 50.8 6.2 24 152-175 5-28 (213)
332 2bdt_A BH3686; alpha-beta prot 93.5 0.041 1.4E-06 52.3 3.6 23 152-174 3-25 (189)
333 1ukz_A Uridylate kinase; trans 93.5 0.046 1.6E-06 52.7 3.9 26 150-175 14-39 (203)
334 3fwy_A Light-independent proto 93.5 0.04 1.4E-06 57.1 3.6 40 149-191 46-85 (314)
335 1cke_A CK, MSSA, protein (cyti 93.5 0.041 1.4E-06 54.1 3.6 24 152-175 6-29 (227)
336 3a00_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 52.8 2.8 24 152-175 2-25 (186)
337 2bbw_A Adenylate kinase 4, AK4 93.5 0.044 1.5E-06 54.8 3.8 26 150-175 26-51 (246)
338 1gvn_B Zeta; postsegregational 93.5 0.067 2.3E-06 54.7 5.2 26 150-175 32-57 (287)
339 3cm0_A Adenylate kinase; ATP-b 93.4 0.047 1.6E-06 51.7 3.7 24 152-175 5-28 (186)
340 1uf9_A TT1252 protein; P-loop, 93.4 0.049 1.7E-06 52.4 3.9 26 149-174 6-31 (203)
341 1uj2_A Uridine-cytidine kinase 93.4 0.047 1.6E-06 54.7 3.9 27 149-175 20-46 (252)
342 3asz_A Uridine kinase; cytidin 93.4 0.046 1.6E-06 53.1 3.7 26 150-175 5-30 (211)
343 1e6c_A Shikimate kinase; phosp 93.4 0.039 1.3E-06 51.6 3.0 24 152-175 3-26 (173)
344 2if2_A Dephospho-COA kinase; a 93.4 0.043 1.5E-06 53.0 3.4 22 152-173 2-23 (204)
345 2bwj_A Adenylate kinase 5; pho 93.4 0.045 1.5E-06 52.5 3.6 25 151-175 12-36 (199)
346 3ney_A 55 kDa erythrocyte memb 93.3 0.05 1.7E-06 51.8 3.7 26 150-175 18-43 (197)
347 1xjc_A MOBB protein homolog; s 93.3 0.052 1.8E-06 50.3 3.7 26 150-175 3-28 (169)
348 2j41_A Guanylate kinase; GMP, 93.3 0.044 1.5E-06 52.9 3.4 25 151-175 6-30 (207)
349 1fx0_B ATP synthase beta chain 93.2 0.32 1.1E-05 52.7 10.1 96 142-239 155-276 (498)
350 1lvg_A Guanylate kinase, GMP k 93.2 0.04 1.4E-06 52.9 2.9 24 152-175 5-28 (198)
351 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.053 1.8E-06 54.7 3.9 25 151-175 4-28 (260)
352 3tlx_A Adenylate kinase 2; str 93.2 0.093 3.2E-06 52.2 5.6 26 150-175 28-53 (243)
353 2pt5_A Shikimate kinase, SK; a 93.2 0.052 1.8E-06 50.4 3.6 23 153-175 2-24 (168)
354 2vli_A Antibiotic resistance p 93.1 0.036 1.2E-06 52.4 2.4 25 151-175 5-29 (183)
355 2qt1_A Nicotinamide riboside k 93.1 0.052 1.8E-06 52.5 3.6 26 150-175 20-45 (207)
356 2cdn_A Adenylate kinase; phosp 93.1 0.053 1.8E-06 52.2 3.6 26 150-175 19-44 (201)
357 1qf9_A UMP/CMP kinase, protein 93.1 0.054 1.8E-06 51.6 3.6 25 151-175 6-30 (194)
358 2grj_A Dephospho-COA kinase; T 93.1 0.058 2E-06 51.4 3.8 26 150-175 11-36 (192)
359 3rfe_A Platelet glycoprotein I 93.0 0.11 3.6E-06 45.9 5.2 53 511-567 12-67 (130)
360 1jjv_A Dephospho-COA kinase; P 93.0 0.048 1.7E-06 52.7 3.2 22 152-173 3-24 (206)
361 2z0h_A DTMP kinase, thymidylat 93.0 0.1 3.6E-06 49.7 5.5 23 153-175 2-24 (197)
362 2q6t_A DNAB replication FORK h 93.0 0.3 1E-05 53.3 9.9 54 150-207 199-252 (444)
363 2pbr_A DTMP kinase, thymidylat 92.9 0.056 1.9E-06 51.5 3.5 23 153-175 2-24 (195)
364 4gp7_A Metallophosphoesterase; 92.9 0.049 1.7E-06 50.9 2.9 23 150-172 8-30 (171)
365 2p5t_B PEZT; postsegregational 92.9 0.074 2.5E-06 53.3 4.4 26 150-175 31-56 (253)
366 3vr4_D V-type sodium ATPase su 92.8 0.23 7.8E-06 53.3 8.2 97 142-239 141-258 (465)
367 1g41_A Heat shock protein HSLU 92.8 0.072 2.5E-06 57.5 4.4 46 130-175 15-74 (444)
368 1zd8_A GTP:AMP phosphotransfer 92.8 0.06 2.1E-06 53.0 3.6 25 151-175 7-31 (227)
369 2wwf_A Thymidilate kinase, put 92.7 0.065 2.2E-06 52.0 3.7 25 151-175 10-34 (212)
370 4e22_A Cytidylate kinase; P-lo 92.7 0.064 2.2E-06 53.8 3.6 26 150-175 26-51 (252)
371 1q57_A DNA primase/helicase; d 92.7 0.4 1.4E-05 53.4 10.6 54 150-207 241-294 (503)
372 1aky_A Adenylate kinase; ATP:A 92.7 0.069 2.3E-06 52.2 3.8 25 151-175 4-28 (220)
373 1htw_A HI0065; nucleotide-bind 92.7 0.07 2.4E-06 48.9 3.6 27 149-175 31-57 (158)
374 3fb4_A Adenylate kinase; psych 92.7 0.064 2.2E-06 52.2 3.6 23 153-175 2-24 (216)
375 2yhs_A FTSY, cell division pro 92.6 0.49 1.7E-05 51.5 10.6 26 150-175 292-317 (503)
376 1znw_A Guanylate kinase, GMP k 92.6 0.064 2.2E-06 51.9 3.4 26 150-175 19-44 (207)
377 1nn5_A Similar to deoxythymidy 92.6 0.068 2.3E-06 51.9 3.7 25 151-175 9-33 (215)
378 3aez_A Pantothenate kinase; tr 92.6 0.071 2.4E-06 55.1 3.9 27 149-175 88-114 (312)
379 2jeo_A Uridine-cytidine kinase 92.5 0.076 2.6E-06 53.0 3.9 26 150-175 24-49 (245)
380 1z6g_A Guanylate kinase; struc 92.5 0.057 2E-06 52.7 2.9 26 150-175 22-47 (218)
381 3dl0_A Adenylate kinase; phosp 92.5 0.069 2.4E-06 52.0 3.5 23 153-175 2-24 (216)
382 1tue_A Replication protein E1; 92.5 0.098 3.4E-06 49.7 4.3 37 139-175 45-82 (212)
383 1zak_A Adenylate kinase; ATP:A 92.4 0.068 2.3E-06 52.4 3.2 25 151-175 5-29 (222)
384 3gqb_B V-type ATP synthase bet 92.3 0.24 8.3E-06 53.1 7.6 97 142-239 137-261 (464)
385 1s96_A Guanylate kinase, GMP k 92.3 0.075 2.6E-06 51.8 3.5 26 150-175 15-40 (219)
386 2v54_A DTMP kinase, thymidylat 92.3 0.081 2.8E-06 50.9 3.7 25 151-175 4-28 (204)
387 1gtv_A TMK, thymidylate kinase 92.2 0.044 1.5E-06 53.3 1.7 23 153-175 2-24 (214)
388 4akg_A Glutathione S-transfera 92.2 0.45 1.5E-05 62.9 11.4 225 154-434 1270-1537(2695)
389 2f1r_A Molybdopterin-guanine d 92.2 0.055 1.9E-06 50.4 2.2 24 152-175 3-26 (171)
390 2pez_A Bifunctional 3'-phospho 92.2 0.086 2.9E-06 49.6 3.6 25 151-175 5-29 (179)
391 1rj9_A FTSY, signal recognitio 92.1 0.084 2.9E-06 54.3 3.7 26 150-175 101-126 (304)
392 1m7g_A Adenylylsulfate kinase; 92.1 0.089 3E-06 51.0 3.7 27 149-175 23-49 (211)
393 3hjn_A DTMP kinase, thymidylat 92.1 0.18 6.3E-06 48.1 5.8 49 153-204 2-50 (197)
394 3d3q_A TRNA delta(2)-isopenten 92.0 0.089 3E-06 54.6 3.7 24 152-175 8-31 (340)
395 2i3b_A HCR-ntpase, human cance 92.0 0.075 2.6E-06 50.5 2.9 24 152-175 2-25 (189)
396 3end_A Light-independent proto 91.9 0.13 4.4E-06 53.3 4.9 41 149-192 39-79 (307)
397 3r20_A Cytidylate kinase; stru 91.9 0.095 3.3E-06 51.4 3.6 25 151-175 9-33 (233)
398 2c61_A A-type ATP synthase non 91.9 0.3 1E-05 52.7 7.7 97 142-239 142-259 (469)
399 2qe7_A ATP synthase subunit al 91.9 0.46 1.6E-05 51.5 9.2 93 142-239 152-264 (502)
400 1np6_A Molybdopterin-guanine d 91.9 0.1 3.5E-06 48.7 3.6 25 151-175 6-30 (174)
401 3cmu_A Protein RECA, recombina 91.8 0.28 9.6E-06 62.5 8.5 82 150-239 382-471 (2050)
402 2r9v_A ATP synthase subunit al 91.8 0.42 1.4E-05 51.9 8.7 93 142-239 165-277 (515)
403 3exa_A TRNA delta(2)-isopenten 91.7 0.11 3.6E-06 53.1 3.8 25 151-175 3-27 (322)
404 1vht_A Dephospho-COA kinase; s 91.7 0.1 3.5E-06 50.8 3.8 23 151-173 4-26 (218)
405 3ake_A Cytidylate kinase; CMP 91.7 0.099 3.4E-06 50.4 3.6 23 153-175 4-26 (208)
406 2f6r_A COA synthase, bifunctio 91.7 0.1 3.5E-06 53.2 3.7 23 150-172 74-96 (281)
407 3a8t_A Adenylate isopentenyltr 91.7 0.097 3.3E-06 54.1 3.5 25 151-175 40-64 (339)
408 3be4_A Adenylate kinase; malar 91.7 0.1 3.4E-06 50.9 3.5 24 152-175 6-29 (217)
409 3nwj_A ATSK2; P loop, shikimat 91.7 0.08 2.7E-06 52.7 2.8 25 151-175 48-72 (250)
410 4eaq_A DTMP kinase, thymidylat 91.6 0.18 6E-06 49.6 5.3 26 150-175 25-50 (229)
411 2xb4_A Adenylate kinase; ATP-b 91.6 0.1 3.5E-06 51.1 3.6 23 153-175 2-24 (223)
412 3crm_A TRNA delta(2)-isopenten 91.6 0.1 3.6E-06 53.7 3.7 24 152-175 6-29 (323)
413 2onk_A Molybdate/tungstate ABC 91.6 0.11 3.6E-06 51.6 3.6 26 149-175 23-48 (240)
414 1e4v_A Adenylate kinase; trans 91.5 0.1 3.5E-06 50.7 3.5 23 153-175 2-24 (214)
415 3mfy_A V-type ATP synthase alp 91.5 0.63 2.1E-05 51.0 9.7 58 142-204 217-276 (588)
416 3p32_A Probable GTPase RV1496/ 91.5 0.19 6.6E-06 53.1 5.8 37 139-175 65-103 (355)
417 3cmw_A Protein RECA, recombina 91.4 0.27 9.2E-06 61.9 7.7 83 150-240 382-472 (1706)
418 2ehv_A Hypothetical protein PH 91.4 0.1 3.4E-06 52.1 3.4 24 150-173 29-52 (251)
419 3b9q_A Chloroplast SRP recepto 91.4 0.12 4E-06 53.2 3.9 26 150-175 99-124 (302)
420 3k1j_A LON protease, ATP-depen 91.4 0.14 4.6E-06 58.7 4.8 43 131-175 42-84 (604)
421 3cmw_A Protein RECA, recombina 91.4 0.27 9.1E-06 61.9 7.6 82 150-239 1430-1519(1706)
422 1ak2_A Adenylate kinase isoenz 91.3 0.12 4.1E-06 51.0 3.8 25 151-175 16-40 (233)
423 1pgv_A TMD-1, tropomodulin TMD 91.3 0.3 1E-05 46.3 6.3 64 504-568 38-111 (197)
424 3vr4_A V-type sodium ATPase ca 91.3 0.55 1.9E-05 51.6 9.0 57 142-203 222-280 (600)
425 1sq5_A Pantothenate kinase; P- 91.2 0.12 4.2E-06 53.4 3.9 26 150-175 79-104 (308)
426 3lnc_A Guanylate kinase, GMP k 91.2 0.074 2.5E-06 52.5 2.1 25 151-175 27-52 (231)
427 3oaa_A ATP synthase subunit al 91.2 0.22 7.5E-06 53.9 5.8 94 142-239 152-264 (513)
428 3io3_A DEHA2D07832P; chaperone 91.1 0.22 7.6E-06 52.2 5.7 48 148-196 15-62 (348)
429 3foz_A TRNA delta(2)-isopenten 91.0 0.13 4.5E-06 52.3 3.7 25 151-175 10-34 (316)
430 3iqw_A Tail-anchored protein t 91.0 0.27 9.3E-06 51.2 6.2 48 147-197 12-59 (334)
431 2pcj_A ABC transporter, lipopr 91.0 0.1 3.4E-06 51.1 2.7 26 150-175 29-54 (224)
432 3tif_A Uncharacterized ABC tra 90.9 0.11 3.9E-06 51.2 3.1 26 150-175 30-55 (235)
433 1oix_A RAS-related protein RAB 90.9 0.13 4.5E-06 48.9 3.4 25 151-175 29-53 (191)
434 1a7j_A Phosphoribulokinase; tr 90.8 0.075 2.5E-06 54.4 1.7 26 150-175 4-29 (290)
435 3b85_A Phosphate starvation-in 90.8 0.094 3.2E-06 50.6 2.3 23 152-174 23-45 (208)
436 1yrb_A ATP(GTP)binding protein 90.8 0.14 4.9E-06 51.4 3.7 26 150-175 13-38 (262)
437 1g8f_A Sulfate adenylyltransfe 90.7 0.2 6.8E-06 55.2 5.1 44 132-175 374-419 (511)
438 1zu4_A FTSY; GTPase, signal re 90.6 0.17 5.8E-06 52.5 4.2 26 150-175 104-129 (320)
439 2dyk_A GTP-binding protein; GT 90.6 0.16 5.3E-06 46.4 3.6 24 152-175 2-25 (161)
440 2cbz_A Multidrug resistance-as 90.6 0.12 4E-06 51.2 2.8 26 150-175 30-55 (237)
441 3bgw_A DNAB-like replicative h 90.6 0.5 1.7E-05 51.4 8.1 52 150-206 196-247 (444)
442 1cr0_A DNA primase/helicase; R 90.5 0.29 1E-05 50.2 6.0 52 150-205 34-85 (296)
443 2og2_A Putative signal recogni 90.5 0.16 5.5E-06 53.4 3.9 26 150-175 156-181 (359)
444 1pgv_A TMD-1, tropomodulin TMD 90.5 0.21 7.2E-06 47.3 4.4 36 506-541 69-108 (197)
445 2ck3_A ATP synthase subunit al 90.5 0.69 2.4E-05 50.3 8.9 97 142-239 152-272 (510)
446 2d2e_A SUFC protein; ABC-ATPas 90.4 0.14 4.8E-06 51.1 3.3 25 150-174 28-52 (250)
447 3gfo_A Cobalt import ATP-bindi 90.4 0.12 4.2E-06 52.2 2.8 26 150-175 33-58 (275)
448 1b0u_A Histidine permease; ABC 90.4 0.12 4.2E-06 51.9 2.8 26 150-175 31-56 (262)
449 4edh_A DTMP kinase, thymidylat 90.4 0.37 1.3E-05 46.6 6.1 31 152-184 7-37 (213)
450 3e1s_A Exodeoxyribonuclease V, 90.3 0.27 9.2E-06 55.5 5.8 36 138-175 193-228 (574)
451 3lv8_A DTMP kinase, thymidylat 90.3 0.34 1.2E-05 47.6 5.8 37 151-189 27-63 (236)
452 2zu0_C Probable ATP-dependent 90.3 0.15 5.1E-06 51.4 3.3 25 150-174 45-69 (267)
453 2eyu_A Twitching motility prot 90.3 0.24 8.3E-06 49.6 4.9 110 149-269 23-135 (261)
454 2f9l_A RAB11B, member RAS onco 90.2 0.15 5.1E-06 48.8 3.2 24 152-175 6-29 (199)
455 1ltq_A Polynucleotide kinase; 90.2 0.16 5.5E-06 52.3 3.6 23 152-174 3-25 (301)
456 1ji0_A ABC transporter; ATP bi 90.2 0.13 4.4E-06 51.0 2.8 26 150-175 31-56 (240)
457 1sgw_A Putative ABC transporte 90.2 0.11 3.9E-06 50.3 2.3 26 150-175 34-59 (214)
458 2pze_A Cystic fibrosis transme 90.1 0.14 4.6E-06 50.4 2.8 26 150-175 33-58 (229)
459 2wji_A Ferrous iron transport 90.1 0.15 5.1E-06 47.0 3.0 23 152-174 4-26 (165)
460 2olj_A Amino acid ABC transpor 90.1 0.13 4.6E-06 51.5 2.8 26 150-175 49-74 (263)
461 3upu_A ATP-dependent DNA helic 90.1 0.31 1.1E-05 53.6 6.0 39 136-175 31-69 (459)
462 1mv5_A LMRA, multidrug resista 90.1 0.14 4.9E-06 50.8 3.0 26 150-175 27-52 (243)
463 4g1u_C Hemin import ATP-bindin 90.1 0.13 4.6E-06 51.7 2.8 26 150-175 36-61 (266)
464 2qmh_A HPR kinase/phosphorylas 90.0 0.16 5.3E-06 48.0 3.0 24 152-175 35-58 (205)
465 1g6h_A High-affinity branched- 90.0 0.13 4.6E-06 51.5 2.8 26 150-175 32-57 (257)
466 2zej_A Dardarin, leucine-rich 90.0 0.12 4.2E-06 48.7 2.3 22 153-174 4-25 (184)
467 2ff7_A Alpha-hemolysin translo 89.9 0.14 4.8E-06 50.9 2.8 26 150-175 34-59 (247)
468 2r8r_A Sensor protein; KDPD, P 89.9 0.28 9.6E-06 47.4 4.7 23 153-175 8-30 (228)
469 4tmk_A Protein (thymidylate ki 89.9 0.4 1.4E-05 46.3 5.9 52 152-205 4-55 (213)
470 2ged_A SR-beta, signal recogni 89.9 0.31 1.1E-05 46.0 5.2 26 150-175 47-72 (193)
471 1vpl_A ABC transporter, ATP-bi 89.9 0.14 5E-06 51.1 2.8 26 150-175 40-65 (256)
472 1fx0_A ATP synthase alpha chai 89.8 0.14 4.8E-06 55.6 2.8 83 150-239 162-265 (507)
473 2v9p_A Replication protein E1; 89.8 0.17 5.9E-06 51.8 3.4 27 149-175 124-150 (305)
474 3zvl_A Bifunctional polynucleo 89.8 0.17 5.7E-06 54.9 3.4 27 149-175 256-282 (416)
475 2ce2_X GTPase HRAS; signaling 89.8 0.17 5.7E-06 46.3 3.0 23 153-175 5-27 (166)
476 3eph_A TRNA isopentenyltransfe 89.7 0.19 6.7E-06 53.1 3.7 24 152-175 3-26 (409)
477 2qi9_C Vitamin B12 import ATP- 89.6 0.15 5.3E-06 50.6 2.8 26 150-175 25-50 (249)
478 2ghi_A Transport protein; mult 89.6 0.15 5.2E-06 51.1 2.8 26 150-175 45-70 (260)
479 2ixe_A Antigen peptide transpo 89.6 0.15 5.2E-06 51.5 2.8 26 150-175 44-69 (271)
480 1q3t_A Cytidylate kinase; nucl 89.5 0.22 7.5E-06 49.2 3.9 26 150-175 15-40 (236)
481 3f9v_A Minichromosome maintena 89.5 0.11 3.7E-06 59.1 1.7 46 130-175 295-351 (595)
482 2ocp_A DGK, deoxyguanosine kin 89.5 0.22 7.4E-06 49.4 3.8 25 151-175 2-26 (241)
483 1z2a_A RAS-related protein RAB 89.5 0.18 6.2E-06 46.3 3.1 24 152-175 6-29 (168)
484 2nq2_C Hypothetical ABC transp 89.4 0.16 5.6E-06 50.7 2.8 26 150-175 30-55 (253)
485 2yz2_A Putative ABC transporte 89.4 0.16 5.5E-06 51.2 2.8 26 150-175 32-57 (266)
486 1cp2_A CP2, nitrogenase iron p 89.4 0.35 1.2E-05 48.7 5.4 38 152-192 2-39 (269)
487 2ihy_A ABC transporter, ATP-bi 89.4 0.16 5.6E-06 51.4 2.8 26 150-175 46-71 (279)
488 1p9r_A General secretion pathw 89.4 0.52 1.8E-05 50.7 6.9 28 148-175 164-191 (418)
489 2wjg_A FEOB, ferrous iron tran 89.3 0.22 7.4E-06 46.9 3.5 23 152-174 8-30 (188)
490 3con_A GTPase NRAS; structural 89.3 0.19 6.5E-06 47.5 3.1 24 152-175 22-45 (190)
491 1nlf_A Regulatory protein REPA 89.2 0.19 6.5E-06 51.1 3.2 25 151-175 30-54 (279)
492 3kjh_A CO dehydrogenase/acetyl 89.1 0.44 1.5E-05 47.3 5.8 42 154-198 3-44 (254)
493 3sop_A Neuronal-specific septi 88.9 0.22 7.5E-06 50.2 3.4 23 153-175 4-26 (270)
494 1zj6_A ADP-ribosylation factor 88.9 0.37 1.3E-05 45.3 4.9 34 140-174 6-39 (187)
495 1u8z_A RAS-related protein RAL 88.9 0.22 7.4E-06 45.7 3.1 24 152-175 5-28 (168)
496 2nzj_A GTP-binding protein REM 88.8 0.19 6.6E-06 46.6 2.7 24 152-175 5-28 (175)
497 1r8s_A ADP-ribosylation factor 88.7 0.24 8.2E-06 45.3 3.3 22 154-175 3-24 (164)
498 1fzq_A ADP-ribosylation factor 88.7 0.31 1.1E-05 45.7 4.1 25 150-174 15-39 (181)
499 1svm_A Large T antigen; AAA+ f 88.7 0.25 8.6E-06 52.3 3.7 27 149-175 167-193 (377)
500 1z08_A RAS-related protein RAB 88.6 0.23 7.8E-06 45.8 3.1 24 152-175 7-30 (170)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-48 Score=446.98 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=251.1
Q ss_pred CcccchhHHHHHHHHHhccC---CceEEEEEcCCCChHHHHHHHHHH--hhccCCCCCCEEEEEEecCCC--CHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEV---QVGIIGLYGMGGVGKTTLLTQINN--KFIDTPNDFDVVIWVVVSKDM--QLERIQEK 202 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~ 202 (850)
+..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.+ +...+++.
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 34369999999999999753 689999999999999999999998 44 568899999999999985 89999999
Q ss_pred HHHHhcCCC---------CCCHHHHHHHHHHHhccC-cEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh
Q 038480 203 IGERIGSFG---------NKSLEEKASDIFKILSKK-KFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL 272 (850)
Q Consensus 203 i~~~l~~~~---------~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 272 (850)
|+.+++... ..+.+++...+++.|+++ ||||||||||+..++ .+. ..+||+||||||+..++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 999998621 223456788999999996 999999999997754 111 1278999999999999987
Q ss_pred cc-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 038480 273 MG-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRR 351 (850)
Q Consensus 273 ~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (850)
++ ...+|+|++|+.+|||+||.+.++... .++.+.+++++|+++|+|+||||+++|+.++.+ + |... +.+.+
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 76 446899999999999999999987654 246778899999999999999999999999764 2 5443 44444
Q ss_pred ccCCCCCCchhhHhHHHHhhcCCChHHHHHHHh-----------HhcCCCCCcccCHHHHHHHHHHc--CCCCCCC-Ccc
Q 038480 352 SASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLL-----------YCSLFPEDYQISKIELIECWIGE--GFLNGFE-GMG 417 (850)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~ 417 (850)
..+... .+++..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ...
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 322211 24688999999999998 8999999 999999999999 8999999 9998876 566
Q ss_pred chhhHHHHHHHHHHhhhcccc---CcceEEEhhhHHHHHHHHHhh
Q 038480 418 VYNQGYYVIGVLVQACLLEEV---GTNFVKMHDVIRDMSLWIACE 459 (850)
Q Consensus 418 ~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~~~~~ 459 (850)
.++.++ |+++|+++||++.. ...+|+|||+||++|++++.+
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 677777 99999999999976 346899999999999988865
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-39 Score=374.97 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=230.9
Q ss_pred cccchhHHHHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCE-EEEEEecCCCCHHHHHHHHHHHhc
Q 038480 131 TIVGLESTLDKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDV-VIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..|||++++++|.++|.+ ++.++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999976 568999999999999999999999875 55678986 999999999999888888887643
Q ss_pred CC-----CC--------CCHHHHHHHHHHHh---ccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh
Q 038480 209 SF-----GN--------KSLEEKASDIFKIL---SKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL 272 (850)
Q Consensus 209 ~~-----~~--------~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 272 (850)
.. .. .+.++....+++.+ .+||+||||||||+...|+.+. +||+||||||+..++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 20 01 12344566677766 6799999999999988887642 68999999999999865
Q ss_pred ccCcceEecc------CCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCC-CHHHHHHH
Q 038480 273 MGAQKKFKIE------CLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKN-TPEEWRYA 345 (850)
Q Consensus 273 ~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~-~~~~w~~~ 345 (850)
+.....+.++ +|+.+|||+||.+.++.. ..++..+| |+|+||||+++|+.|+.+. +.+.|+..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 5544566777 999999999999985432 12233443 9999999999999998863 67888752
Q ss_pred HHHHhhccCCCCCCchhhHhHHHHhhcCCChHHH-HHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHH
Q 038480 346 IEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVL-RSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYY 424 (850)
Q Consensus 346 l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 424 (850)
....+..+|.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.++.
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~ 406 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMV 406 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHH
T ss_pred -------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHH
Confidence 125899999999999999 67 99999999999999999999999999987 245888
Q ss_pred HHHHHHHhhhcccc-CcceEEEhhhHHHHH
Q 038480 425 VIGVLVQACLLEEV-GTNFVKMHDVIRDMS 453 (850)
Q Consensus 425 ~~~~L~~~~ll~~~-~~~~~~mHdlv~~~~ 453 (850)
++++|+++||++.. ...+|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999999986 467899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-37 Score=391.92 Aligned_cols=306 Identities=21% Similarity=0.268 Sum_probs=251.7
Q ss_pred CCcccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCC-CCCEEEEEEecCCCC--HHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN-DFDVVIWVVVSKDMQ--LERIQEKI 203 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~--~~~~~~~i 203 (850)
.+.||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45689999999999999953 57899999999999999999999988522234 457889999998543 44456677
Q ss_pred HHHhcCC------CCCCHHHHHHHHHHHhccC--cEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhh-cc
Q 038480 204 GERIGSF------GNKSLEEKASDIFKILSKK--KFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSL-MG 274 (850)
Q Consensus 204 ~~~l~~~------~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~-~~ 274 (850)
+..+... ...+.+++...++..+.++ |+||||||||+...|..+ .+|++||||||++.++.. ++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 7777651 2346678888899999877 999999999998777654 468999999999999854 55
Q ss_pred CcceEeccC-CChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhcc
Q 038480 275 AQKKFKIEC-LRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRSA 353 (850)
Q Consensus 275 ~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 353 (850)
....+++.+ |+++||++||...++... +..++++++|+++|+|+||||.++|++|+.+. ..|..+++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 667899996 999999999999885433 34556799999999999999999999998754 46999999987764
Q ss_pred CCC-----CCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHHHHH
Q 038480 354 SEF-----PGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYVIGV 428 (850)
Q Consensus 354 ~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~ 428 (850)
+.. ....+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~ 417 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQE 417 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHH
Confidence 321 11124699999999999999 799999999999999999999999999765 3678899999
Q ss_pred HHHhhhccccC---cceEEEhhhHHHHHHHHHhh
Q 038480 429 LVQACLLEEVG---TNFVKMHDVIRDMSLWIACE 459 (850)
Q Consensus 429 L~~~~ll~~~~---~~~~~mHdlv~~~~~~~~~~ 459 (850)
|+++||++... ..+|+|||+||++++..+.+
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999999763 33699999999999988654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=338.90 Aligned_cols=301 Identities=20% Similarity=0.283 Sum_probs=237.7
Q ss_pred CCcccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccC-CCCC-CEEEEEEecCCCCHHHHHHHH-
Q 038480 129 EPTIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDT-PNDF-DVVIWVVVSKDMQLERIQEKI- 203 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~i- 203 (850)
++.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. .+ ...| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35689999999999999974 467899999999999999999999875 33 4678 58999999876 333444444
Q ss_pred --HHHhcC------CCCCCHHHHHHHHHHHhcc--CcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhHhhhc
Q 038480 204 --GERIGS------FGNKSLEEKASDIFKILSK--KKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDVCSLM 273 (850)
Q Consensus 204 --~~~l~~------~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~ 273 (850)
+..++. ....+.+.....+.+.+.+ +++||||||+|+...+..+ ..|++||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 444542 2234567778888888876 7899999999987655432 4588999999999887654
Q ss_pred cCcceEec---cCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 038480 274 GAQKKFKI---ECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLR 350 (850)
Q Consensus 274 ~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~ 350 (850)
. ...+.+ ++|+.+||++||...++... ....+.+.+|+++|+|+|+||.++|+.++.+. ..|..+++.+.
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 3 233444 58999999999999987532 12245689999999999999999999998743 46999888887
Q ss_pred hccCC-C----CCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCCccchhhHHHH
Q 038480 351 RSASE-F----PGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEGMGVYNQGYYV 425 (850)
Q Consensus 351 ~~~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 425 (850)
..... . ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~ 414 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDI 414 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHH
Confidence 65322 1 11224789999999999999 799999999999999999999999999654 2457889
Q ss_pred HHHHHHhhhcccc---CcceEEEhhhHHHHHHHHH
Q 038480 426 IGVLVQACLLEEV---GTNFVKMHDVIRDMSLWIA 457 (850)
Q Consensus 426 ~~~L~~~~ll~~~---~~~~~~mHdlv~~~~~~~~ 457 (850)
+++|+++||++.. ....|+||+++|++++...
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999999999864 3458999999999998773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.3e-23 Score=224.65 Aligned_cols=280 Identities=17% Similarity=0.246 Sum_probs=175.0
Q ss_pred cccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeE
Q 038480 481 VRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYL 560 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L 560 (850)
...++++++|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 34566777777777777777666777777777777777766655 677777777777777 666665 47777777777
Q ss_pred eecccccccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCC
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKH 632 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 632 (850)
++++|.+..+|. +..+++|++|+++ ..+..+++|++|++.+|.+.. ...+..+++
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------~~~~~~l~~ 178 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD----------------VTPIANLTD 178 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC----------------CGGGGGCTT
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC----------------chhhccCCC
Confidence 777777777765 6777777777776 335667777777777766432 112566677
Q ss_pred CCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCC
Q 038480 633 LDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGF 712 (850)
Q Consensus 633 L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l 712 (850)
|+.|+++.|.+..+..+ ..+++|+.|++++|. +...+ .+..+++|+.|++++|. +..++. ...+
T Consensus 179 L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n~-l~~~~~--------~~~l 242 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNNK-ITDLSP--------LANL 242 (347)
T ss_dssp CSEEECTTSCCCCCGGG----GGCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSC-CCCCGG--------GTTC
T ss_pred CCEEEccCCcccccccc----cCCCccceeecccCC-CCCCc--hhhcCCcCCEEEccCCc-cCCCcc--------hhcC
Confidence 77777776665544432 223566777776665 22222 15566677777777663 332211 2256
Q ss_pred CCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCC
Q 038480 713 DSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFP 792 (850)
Q Consensus 713 ~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~ 792 (850)
++|++|++++| .+..++.+..+++|++|++++| .++.++ .+..+++|+.|++++|.-....+.....++
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 67777777776 4555556666777777777665 344331 345566777777776643222223344567
Q ss_pred CccEEeeccCCCCCCCC
Q 038480 793 DLLELFVSECPKLKKLP 809 (850)
Q Consensus 793 ~L~~L~i~~C~~L~~Lp 809 (850)
+|+.|++++|+ ++.++
T Consensus 312 ~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp TCSEEECCSSS-CCCCG
T ss_pred cCCEEEccCCc-ccccc
Confidence 77777777764 55443
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2e-23 Score=226.47 Aligned_cols=290 Identities=17% Similarity=0.225 Sum_probs=235.1
Q ss_pred EEEEcCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc
Q 038480 467 FLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 546 (850)
.+...+......+.+..++++++|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n-~i~~ 124 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED-NISD 124 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS-CCCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC-cccC
Confidence 344455566667778889999999999999999888999999999999999998875 3899999999999999 8888
Q ss_pred cChhhccccCCCeEeecccccccccchhhcCCccceeecc-------cccccCCCccEEeccCCCCCCCCCCCcccccCC
Q 038480 547 LPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGG 619 (850)
Q Consensus 547 lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 619 (850)
+|. +..+++|++|++++|.....+..+..+++|++|++. ..+..+++|++|++.+|.+..
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------ 191 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED------------ 191 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC------------
T ss_pred chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc------------
Confidence 886 899999999999999655455569999999999998 347889999999999998653
Q ss_pred ccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccc
Q 038480 620 SEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFN 699 (850)
Q Consensus 620 ~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 699 (850)
+..+..+++|+.++++.+....... ...+++|+.|++++|. +...+. +..+++|+.|++++| .+..+
T Consensus 192 ----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~- 258 (347)
T 4fmz_A 192 ----ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLSP--LANLSQLTWLEIGTN-QISDI- 258 (347)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCC-
T ss_pred ----cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCcc--hhcCCCCCEEECCCC-ccCCC-
Confidence 2237889999999999888766544 2345789999999987 444442 788999999999998 44433
Q ss_pred cccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 700 YVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 700 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
+....+++|+.|++++| .+..++.+..+++|++|++++|......+. .+..+++|+.|++++|+
T Consensus 259 -------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 -------NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME--------VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH--------HHHTCTTCSEEECCSSS
T ss_pred -------hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh--------HhhccccCCEEEccCCc
Confidence 12236899999999999 577778899999999999999864333322 46779999999999986
Q ss_pred cccccccCCCCCCCccEEeeccCC
Q 038480 780 NLEKIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 780 ~l~~i~~~~~~~~~L~~L~i~~C~ 803 (850)
+..++. ...+++|++|++++|+
T Consensus 323 -l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -cccccC-hhhhhccceeehhhhc
Confidence 555544 6678999999999884
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.1e-22 Score=241.84 Aligned_cols=317 Identities=13% Similarity=0.146 Sum_probs=219.8
Q ss_pred CcccccccceEEEeeccccccc------------------ccCC-C--CCCccceeecccccCCCCchhhhcCCCcceEE
Q 038480 478 APEVRKWRDRRRISLLRNKIVA------------------LSET-P--TCPHLVTLFLAINKLDTITSNFFDFMPSLRVL 536 (850)
Q Consensus 478 ~~~~~~~~~l~~L~l~~n~~~~------------------l~~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 536 (850)
++.+..+++++.|++++|.+.. +|.. . ++++|++|++++|.+.+..+..|.++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4567788999999999999988 6654 4 79999999999998766666779999999999
Q ss_pred EccCCCCCc--ccChhhcccc-------CCCeEeecccccccccc--hhhcCCccceeecc-------cccccCCCccEE
Q 038480 537 NLSKNLSLK--QLPSEISKLV-------SLQYLNLSETSIKELPN--ELKALTNLKCWNLE-------QLISSFSDLRVL 598 (850)
Q Consensus 537 ~Ls~~~~i~--~lp~~i~~l~-------~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~l~-------~~i~~l~~L~~L 598 (850)
+|++|..+. .+|..++.+. +|++|++++|.+..+|. .++++++|++|+++ ..++.+++|+.|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEE
Confidence 999994265 5888887776 99999999999999999 89999999999997 456778889999
Q ss_pred eccCCCCCCCCCCCcccccCCccccHHHhccCCC-CCEEEEEeCchhhhhh--------------------------hhc
Q 038480 599 RMLDCGFTADPVPEDSVLFGGSEILVEELINLKH-LDVLTVSLRSFCALQK--------------------------LWS 651 (850)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~l~~--------------------------l~~ 651 (850)
++.+|.+...+ ..+.++++ |+.|+++.|.+..++. ++.
T Consensus 601 ~Ls~N~l~~lp---------------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 601 KLDYNQIEEIP---------------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp ECCSSCCSCCC---------------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred ECcCCccccch---------------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 99998866321 22344444 5555554444332221 110
Q ss_pred CCC--ccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCC-CCCCCCCCccEEecccCCCCCC
Q 038480 652 SPK--LQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTA-REPYGFDSLQRVTIDCCKKLKE 728 (850)
Q Consensus 652 ~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~ 728 (850)
... ...+|+.|++++|. +..++...+..+++|+.|++++| .+..++...+... +....+++|+.|+|++| .+..
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC
T ss_pred hhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCcc
Confidence 111 11356666666665 33444333346778888888887 3444411111000 00112348999999998 4556
Q ss_pred Ccc-cc--cCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccc------cccccccccCCCCCCCccEEee
Q 038480 729 VTW-LA--FAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQD------LSNLEKIYWNALSFPDLLELFV 799 (850)
Q Consensus 729 l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~i~~~~~~~~~L~~L~i 799 (850)
+|. +. .+++|+.|+|++|. ++.++. .+..+++|+.|+|++ +.-...++.....+++|+.|++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~--------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSSFPT--------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSSCCC--------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCccch--------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 664 54 88999999999864 445654 567889999999976 3334556667778999999999
Q ss_pred ccCCCCCCCCCCCcccccCceEEEeh
Q 038480 800 SECPKLKKLPLDINSARERKIAIRGE 825 (850)
Q Consensus 800 ~~C~~L~~Lp~~~~~~~~~l~~~~~~ 825 (850)
++| ++..+|....+ .|..++-.
T Consensus 814 s~N-~L~~Ip~~l~~---~L~~LdLs 835 (876)
T 4ecn_A 814 GSN-DIRKVDEKLTP---QLYILDIA 835 (876)
T ss_dssp CSS-CCCBCCSCCCS---SSCEEECC
T ss_pred CCC-CCCccCHhhcC---CCCEEECC
Confidence 999 56889887543 44444433
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=5.2e-22 Score=224.13 Aligned_cols=287 Identities=16% Similarity=0.255 Sum_probs=194.4
Q ss_pred cCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
.+......+.+..++++++|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|.
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~- 129 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP- 129 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-
Confidence 344455566677888999999999999888778899999999999999888776 889999999999999 8888875
Q ss_pred hccccCCCeEeecccccccccchhhcCCccceeecc------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccH
Q 038480 551 ISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILV 624 (850)
Q Consensus 551 i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
++++++|++|++++|.+..+| .++.+++|++|++. ..+..+++|++|++.+|.+...
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------- 192 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---------------- 192 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC----------------
T ss_pred HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC----------------
Confidence 889999999999999988886 48888888888876 4467888888888888875532
Q ss_pred HHhccCCCCCEEEEEeCchhhhhhhhc------------------CCCccccceEEEeeecCCCCccccccccCcCCcCe
Q 038480 625 EELINLKHLDVLTVSLRSFCALQKLWS------------------SPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDK 686 (850)
Q Consensus 625 ~~L~~L~~L~~L~l~~~~~~~l~~l~~------------------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 686 (850)
..+..+++|+.|+++.|.......+.. ....+++|+.|++++|.. ...+ .+..+++|+.
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~~--~~~~l~~L~~ 269 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI-SNLA--PLSGLTKLTE 269 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-CCCG--GGTTCTTCSE
T ss_pred hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc-ccch--hhhcCCCCCE
Confidence 124444455555554444333222100 011223455555555442 2221 1444555555
Q ss_pred eeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCc
Q 038480 687 LDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNP 766 (850)
Q Consensus 687 L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 766 (850)
|++++|. +..+ + ....+++|+.|++++| .+..++.+..+++|++|++++|. +..++ .+..
T Consensus 270 L~l~~n~-l~~~-------~-~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~ 329 (466)
T 1o6v_A 270 LKLGANQ-ISNI-------S-PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS---------PVSS 329 (466)
T ss_dssp EECCSSC-CCCC-------G-GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG---------GGGG
T ss_pred EECCCCc-cCcc-------c-cccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch---------hhcc
Confidence 5555552 2222 1 1235677777777777 45555556777777777777754 33332 2467
Q ss_pred CCCccEeeccccccccccccCCCCCCCccEEeeccCC
Q 038480 767 FAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 767 ~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~ 803 (850)
+++|+.|++++| .+..++ ....+++|+.|++++|+
T Consensus 330 l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 330 LTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 888888888886 455553 45678899999998884
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=7.4e-22 Score=223.91 Aligned_cols=297 Identities=23% Similarity=0.270 Sum_probs=215.0
Q ss_pred cCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
.+..+...|. .-..+++.|++++|.+..++ .+..+++|++|++++|.++.+.+..|.++++|++|+|++| .+..+|
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 96 (477)
T 2id5_A 19 HRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIP 96 (477)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred CCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccC
Confidence 3444554543 22458899999999998873 4688999999999999988887777999999999999999 788887
Q ss_pred hh-hccccCCCeEeecccccccc-cchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCccccc
Q 038480 549 SE-ISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLF 617 (850)
Q Consensus 549 ~~-i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (850)
.. ++++++|++|++++|.+..+ |..+..+++|++|+++ ..+..+++|++|++.+|.+..
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------- 166 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---------- 166 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS----------
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc----------
Confidence 64 68899999999999988865 5678889999999887 356788889999988887543
Q ss_pred CCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcc
Q 038480 618 GGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEE 697 (850)
Q Consensus 618 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 697 (850)
.....+.++++|+.|+++.|.+..+.. .....+++|+.|++++|.....++.. .....+|++|++++| .+..
T Consensus 167 ----~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n-~l~~ 238 (477)
T 2id5_A 167 ----IPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHC-NLTA 238 (477)
T ss_dssp ----CCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESS-CCCS
T ss_pred ----cChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCC-cccc
Confidence 134557788888888888877655432 22334568888888888776666532 333458888888888 4444
Q ss_pred cccccccCCCCCCCCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeec
Q 038480 698 FNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRL 775 (850)
Q Consensus 698 l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L 775 (850)
++.. ....+++|+.|+|++|. +..++ .+..+++|++|+|++| .+..+.+ ..+..+++|+.|+|
T Consensus 239 ~~~~------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L~~L~L 303 (477)
T 2id5_A 239 VPYL------AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEP-------YAFRGLNYLRVLNV 303 (477)
T ss_dssp CCHH------HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECT-------TTBTTCTTCCEEEC
T ss_pred cCHH------HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECH-------HHhcCcccCCEEEC
Confidence 4111 12357888888888885 44443 2677888888888875 4555543 25677888888888
Q ss_pred cccccccccccC-CCCCCCccEEeeccCC
Q 038480 776 QDLSNLEKIYWN-ALSFPDLLELFVSECP 803 (850)
Q Consensus 776 ~~~~~l~~i~~~-~~~~~~L~~L~i~~C~ 803 (850)
+++ .++.++.. ...+++|+.|+++++|
T Consensus 304 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 304 SGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 886 46665543 3567788888887654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.6e-22 Score=235.07 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=80.1
Q ss_pred ccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCC-Cc-ccccCCCCceEEeecccccceeccc
Q 038480 678 LADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKE-VT-WLAFAPNLKFVHIERCYEMDEIISV 755 (850)
Q Consensus 678 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-l~-~l~~l~~L~~L~L~~c~~l~~i~~~ 755 (850)
+..+++|+.|++++|...... +...+.+++|++|++++|..... +| .+..+++|++|++++|. ++.+++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~- 490 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDF-------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW- 490 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECC-------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-
T ss_pred hhccccCCEEECcCCCCCccc-------hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh-
Confidence 444555555555555322111 22344677888888888753331 33 46778888888888864 444433
Q ss_pred cccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCCCCcc
Q 038480 756 WKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLDINS 814 (850)
Q Consensus 756 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~ 814 (850)
..+..+++|+.|++++|.-....+.....+++|+.|++++| +++.+|.....
T Consensus 491 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~ 542 (606)
T 3vq2_A 491 ------GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH 542 (606)
T ss_dssp ------TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG
T ss_pred ------hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh
Confidence 25778999999999997544444666778999999999999 58888876444
No 11
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.8e-22 Score=226.06 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=69.0
Q ss_pred ccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCe
Q 038480 480 EVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQY 559 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~ 559 (850)
.+..++++++|++++|.+..+|.+..+++|++|++++|.+++++ ++.+++|++|++++| .++.+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 34455566666666666666555556666666666666665553 555666666666666 555554 556666666
Q ss_pred EeecccccccccchhhcCCccceeecc------cccccCCCccEEeccCCC
Q 038480 560 LNLSETSIKELPNELKALTNLKCWNLE------QLISSFSDLRVLRMLDCG 604 (850)
Q Consensus 560 L~Ls~~~i~~LP~~i~~L~~L~~L~l~------~~i~~l~~L~~L~l~~~~ 604 (850)
|++++|.++.+| ++.+++|++|+++ -.++.+++|++|++.+|.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC
Confidence 666666666554 5566666666655 224455556666665553
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=222.58 Aligned_cols=283 Identities=15% Similarity=0.178 Sum_probs=216.0
Q ss_pred ccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCC
Q 038480 482 RKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQ 558 (850)
Q Consensus 482 ~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~ 558 (850)
..+.+++++++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+| ..++.+++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 345789999999999998876 578899999999999999888878999999999999999 677664 5588999999
Q ss_pred eEeecccccccccchh-hcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhc
Q 038480 559 YLNLSETSIKELPNEL-KALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELI 628 (850)
Q Consensus 559 ~L~Ls~~~i~~LP~~i-~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 628 (850)
+|++++|.++.+|..+ +.+++|++|+++ ..+..+++|++|++.+|.++.. .+.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~ 183 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------DLS 183 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------CGG
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------ccc
Confidence 9999999999998874 899999999997 3467889999999999886531 245
Q ss_pred cCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCC
Q 038480 629 NLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTARE 708 (850)
Q Consensus 629 ~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 708 (850)
.+++|+.|+++.+....+. ...+|+.|++++|. +..++. ..+++|+.|++++|. +... +.
T Consensus 184 ~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~n~-l~~~--------~~ 243 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNN-LTDT--------AW 243 (390)
T ss_dssp GCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSC-CCEEEC---CCCSSCCEEECCSSC-CCCC--------GG
T ss_pred cccccceeecccccccccC-------CCCcceEEECCCCe-eeeccc---cccccccEEECCCCC-Cccc--------HH
Confidence 6788888888877665432 23578888888876 444442 234788888888883 4322 12
Q ss_pred CCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccC
Q 038480 709 PYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWN 787 (850)
Q Consensus 709 ~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~ 787 (850)
...+++|++|++++|......+ .+..+++|++|++++| .++.++. ....+|+|+.|+++++ .+..++..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc--------ccCCCCCCCEEECCCC-cceecCcc
Confidence 2357889999998885333223 4778888999999885 4566654 4567888999999886 56677666
Q ss_pred CCCCCCccEEeeccCCCCCCCCCCCc
Q 038480 788 ALSFPDLLELFVSECPKLKKLPLDIN 813 (850)
Q Consensus 788 ~~~~~~L~~L~i~~C~~L~~Lp~~~~ 813 (850)
...+++|+.|++++| .++.+|+...
T Consensus 314 ~~~l~~L~~L~L~~N-~i~~~~~~~~ 338 (390)
T 3o6n_A 314 QPQFDRLENLYLDHN-SIVTLKLSTH 338 (390)
T ss_dssp HHHHTTCSEEECCSS-CCCCCCCCTT
T ss_pred ccccCcCCEEECCCC-ccceeCchhh
Confidence 667888889988887 4777775443
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.7e-22 Score=236.60 Aligned_cols=317 Identities=14% Similarity=0.136 Sum_probs=193.4
Q ss_pred CcccccccceEEEeeccccccc------------------ccC-CC--CCCccceeecccccCCCCchhhhcCCCcceEE
Q 038480 478 APEVRKWRDRRRISLLRNKIVA------------------LSE-TP--TCPHLVTLFLAINKLDTITSNFFDFMPSLRVL 536 (850)
Q Consensus 478 ~~~~~~~~~l~~L~l~~n~~~~------------------l~~-~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 536 (850)
++.+..+++++.|++++|.+.. +|. +. ++++|++|++++|.+.+..+..|.++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3446667778888888777776 644 34 67778888888777665555557777888888
Q ss_pred EccCCCCCc--ccChhhccc------cCCCeEeecccccccccc--hhhcCCccceeecc--------cccccCCCccEE
Q 038480 537 NLSKNLSLK--QLPSEISKL------VSLQYLNLSETSIKELPN--ELKALTNLKCWNLE--------QLISSFSDLRVL 598 (850)
Q Consensus 537 ~Ls~~~~i~--~lp~~i~~l------~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~l~--------~~i~~l~~L~~L 598 (850)
++++|..+. .+|..++.+ ++|++|++++|.++.+|. .++++++|++|+++ ..++.+++|++|
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L 358 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEE
Confidence 888773154 477777665 777777777777777777 77777777777776 233455666777
Q ss_pred eccCCCCCCCCCCCcccccCCccccHHHhccCC--------------------------CCCEEEEEeCchhhhhh--hh
Q 038480 599 RMLDCGFTADPVPEDSVLFGGSEILVEELINLK--------------------------HLDVLTVSLRSFCALQK--LW 650 (850)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~--------------------------~L~~L~l~~~~~~~l~~--l~ 650 (850)
++.+|.+... +..+.+++ +|+.|+++.|.+..... +.
T Consensus 359 ~L~~N~l~~l---------------p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 359 NLAYNQITEI---------------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp ECCSSEEEEC---------------CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred ECCCCccccc---------------cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 7766654321 11233333 45555555544432110 00
Q ss_pred ---cCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCC-CCCCCCCCccEEecccCCCC
Q 038480 651 ---SSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTA-REPYGFDSLQRVTIDCCKKL 726 (850)
Q Consensus 651 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~~~~~l~~L~~L~L~~~~~l 726 (850)
...-..++|+.|++++|. +..++...+..+++|+.|++++|. +..++....... +....+++|+.|++++|. +
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-L 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-C
T ss_pred ccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-C
Confidence 000022356666666665 334443334456777777777773 333411100000 000122388888888884 4
Q ss_pred CCCcc-cc--cCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccc------cccccccccCCCCCCCccEE
Q 038480 727 KEVTW-LA--FAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQD------LSNLEKIYWNALSFPDLLEL 797 (850)
Q Consensus 727 ~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~i~~~~~~~~~L~~L 797 (850)
..+|. +. .+++|++|+|++|. ++.+|. .+..+++|+.|+|++ +.-...++.....+++|+.|
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNS-FSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSC-CSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CccChhhhhccCCCcCEEECCCCC-CCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 45653 54 78888888888854 444654 566788899998854 33355566667778889999
Q ss_pred eeccCCCCCCCCCCCcccccCceEEEeh
Q 038480 798 FVSECPKLKKLPLDINSARERKIAIRGE 825 (850)
Q Consensus 798 ~i~~C~~L~~Lp~~~~~~~~~l~~~~~~ 825 (850)
++++| +++.+|.... ..+..++-.
T Consensus 572 ~Ls~N-~l~~ip~~~~---~~L~~L~Ls 595 (636)
T 4eco_A 572 QIGSN-DIRKVNEKIT---PNISVLDIK 595 (636)
T ss_dssp ECCSS-CCCBCCSCCC---TTCCEEECC
T ss_pred ECCCC-cCCccCHhHh---CcCCEEECc
Confidence 99888 4688887644 344444443
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=219.90 Aligned_cols=287 Identities=21% Similarity=0.256 Sum_probs=226.4
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~ 566 (850)
+.++.+++.+..+|.. -.+++++|++++|.++.+++..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 4566777777777653 2468999999999999998888999999999999999 67665 7789999999999999999
Q ss_pred cccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEE
Q 038480 567 IKELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVL 636 (850)
Q Consensus 567 i~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 636 (850)
++.+|.. +.++++|++|+++ ..+..+++|++|++.+|.+.. .....+.++++|+.|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--------------ISHRAFSGLNSLEQL 157 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--------------ECTTSSTTCTTCCEE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce--------------eChhhccCCCCCCEE
Confidence 9999875 6899999999997 456889999999999987543 123457789999999
Q ss_pred EEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCcc
Q 038480 637 TVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQ 716 (850)
Q Consensus 637 ~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~ 716 (850)
+++.|.+..+... ....+++|+.|++++|. +..++...+..+++|+.|++++|..+..+ +.......+|+
T Consensus 158 ~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~ 227 (477)
T 2id5_A 158 TLEKCNLTSIPTE--ALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTM-------TPNCLYGLNLT 227 (477)
T ss_dssp EEESCCCSSCCHH--HHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEE-------CTTTTTTCCCS
T ss_pred ECCCCcCcccChh--HhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcccccc-------CcccccCcccc
Confidence 9999887665431 11234689999999987 44444456888999999999999877755 22222456999
Q ss_pred EEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccc-ccCCCCCCC
Q 038480 717 RVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKI-YWNALSFPD 793 (850)
Q Consensus 717 ~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~~~ 793 (850)
.|++++| .+..++ .+..+++|++|+|++|. ++.++. ..+..+++|+.|+|+++. +..+ +.....+++
T Consensus 228 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 228 SLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNY 297 (477)
T ss_dssp EEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSSC-CSEECTTTBTTCTT
T ss_pred EEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCCc-cceECHHHhcCccc
Confidence 9999999 566676 37889999999999865 666654 257789999999999964 4554 445678999
Q ss_pred ccEEeeccCCCCCCCCCC
Q 038480 794 LLELFVSECPKLKKLPLD 811 (850)
Q Consensus 794 L~~L~i~~C~~L~~Lp~~ 811 (850)
|+.|++++| +++.+|..
T Consensus 298 L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp CCEEECCSS-CCSCCCGG
T ss_pred CCEEECCCC-cCceeCHh
Confidence 999999988 67777754
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=9.1e-22 Score=225.83 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=113.6
Q ss_pred EEcCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc
Q 038480 469 VSTGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 546 (850)
...+..+...|... .+++++|++++|.+..++ .+..+++|++|++++|.++++++..|.++++|++|+|++| .++.
T Consensus 6 ~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 83 (520)
T 2z7x_B 6 DRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVK 83 (520)
T ss_dssp ECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCE
T ss_pred ecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceee
Confidence 33444555555422 279999999999998874 4689999999999999999998888999999999999999 8889
Q ss_pred cChhhccccCCCeEeeccccccc--ccchhhcCCccceeecc------cccccCCCc--cEEeccCCCC
Q 038480 547 LPSEISKLVSLQYLNLSETSIKE--LPNELKALTNLKCWNLE------QLISSFSDL--RVLRMLDCGF 605 (850)
Q Consensus 547 lp~~i~~l~~L~~L~Ls~~~i~~--LP~~i~~L~~L~~L~l~------~~i~~l~~L--~~L~l~~~~~ 605 (850)
+|.. .+++|++|++++|.++. +|..++.+++|++|+++ ..+..+++| ++|++.+|.+
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 9977 89999999999999986 67899999999999998 456778888 9999999876
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.4e-22 Score=223.11 Aligned_cols=332 Identities=17% Similarity=0.141 Sum_probs=209.5
Q ss_pred EEcCCccccCcccccccceEEEeecccccccc--cCCCCCCccceeecccccCC-CCchhhhcCCCcceEEEccCCCCCc
Q 038480 469 VSTGVQLSIAPEVRKWRDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLD-TITSNFFDFMPSLRVLNLSKNLSLK 545 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~~~~i~ 545 (850)
...+.++...|. -.+++++|++++|.+..+ ..+.++++|++|++++|.+. .+++..|.++++|++|+|++| .+.
T Consensus 16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~ 92 (455)
T 3v47_A 16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFL 92 (455)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTC
T ss_pred CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccC
Confidence 334445556665 347899999999999887 34689999999999999875 566777999999999999999 665
Q ss_pred cc-ChhhccccCCCeEeeccccccc-ccch--hhcCCccceeecc---------c-ccccCCCccEEeccCCCCCCCCCC
Q 038480 546 QL-PSEISKLVSLQYLNLSETSIKE-LPNE--LKALTNLKCWNLE---------Q-LISSFSDLRVLRMLDCGFTADPVP 611 (850)
Q Consensus 546 ~l-p~~i~~l~~L~~L~Ls~~~i~~-LP~~--i~~L~~L~~L~l~---------~-~i~~l~~L~~L~l~~~~~~~~~~~ 611 (850)
.+ |..++++++|++|++++|.++. +|.. ++.+++|++|+++ . .+..+++|++|++.+|.+.+....
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 54 7889999999999999999985 4554 8899999999997 1 267899999999999987653221
Q ss_pred Cccccc----------CC-------c---cccHHHhccCCCCCEEEEEeCchhhhhh--hhcCCCccccceEEEeeecCC
Q 038480 612 EDSVLF----------GG-------S---EILVEELINLKHLDVLTVSLRSFCALQK--LWSSPKLQSSTKSLQLRECKD 669 (850)
Q Consensus 612 ~~~~~~----------~~-------~---~~~~~~L~~L~~L~~L~l~~~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~ 669 (850)
...... .. . ......+..+++|+.|+++.|.+..... +... ...++|+.|++++|..
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILSNSYN 251 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECTTCTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-ccccceeeEeeccccc
Confidence 100000 00 0 0000112234567777777665433111 1100 0114566666655532
Q ss_pred CCcc---------cccccc--CcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCC
Q 038480 670 SKSL---------NISYLA--DLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPN 737 (850)
Q Consensus 670 ~~~~---------~~~~l~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~ 737 (850)
.... ....+. ..++|+.|++++|.... + .+...+.+++|+.|++++|......+ .+..+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-L------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-E------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccc-c------chhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 1110 000011 12567777777773222 2 12233457788888888774333323 4667788
Q ss_pred CceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccc-ccCCCCCCCccEEeeccCCCCCCCCCCCcccc
Q 038480 738 LKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKI-YWNALSFPDLLELFVSECPKLKKLPLDINSAR 816 (850)
Q Consensus 738 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~ 816 (850)
|++|+|++|. ++.+++ ..+..+++|+.|+|+++. +..+ +.....+++|++|++++| +++.+|......+
T Consensus 325 L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 394 (455)
T 3v47_A 325 LLKLNLSQNF-LGSIDS-------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL 394 (455)
T ss_dssp CCEEECCSSC-CCEECG-------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred CCEEECCCCc-cCCcCh-------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHhHhccC
Confidence 8888887753 455533 245667788888888764 4444 445667788888888776 5777766442223
Q ss_pred cCceE
Q 038480 817 ERKIA 821 (850)
Q Consensus 817 ~~l~~ 821 (850)
..++.
T Consensus 395 ~~L~~ 399 (455)
T 3v47_A 395 TSLQK 399 (455)
T ss_dssp TTCCE
T ss_pred CcccE
Confidence 33443
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=9.4e-22 Score=216.77 Aligned_cols=275 Identities=19% Similarity=0.245 Sum_probs=220.2
Q ss_pred cccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCC
Q 038480 481 VRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSL 557 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L 557 (850)
+..+++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence 567889999999999998874 5689999999999999999999988999999999999999 88899876 4889999
Q ss_pred CeEeeccccccccc-chhhcCCccceeecc------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC
Q 038480 558 QYLNLSETSIKELP-NELKALTNLKCWNLE------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL 630 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP-~~i~~L~~L~~L~l~------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 630 (850)
++|++++|.+..++ ..+..+++|++|+++ ..++.+++|+.|++.+|.+.. +...
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~-------------------~~~~ 204 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-------------------LAIP 204 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE-------------------EECC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc-------------------cCCC
Confidence 99999999999875 458999999999998 345788999999999887442 3345
Q ss_pred CCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCC
Q 038480 631 KHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPY 710 (850)
Q Consensus 631 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 710 (850)
.+|+.|+++.|.+..++. ...++|+.|++++|. +... ..+..+++|+.|++++|. +..+. +....
T Consensus 205 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~Ls~n~-l~~~~------~~~~~ 269 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG-----PVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDLSYNE-LEKIM------YHPFV 269 (390)
T ss_dssp SSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSC-CCEEE------SGGGT
T ss_pred CcceEEECCCCeeeeccc-----cccccccEEECCCCC-Cccc--HHHcCCCCccEEECCCCc-CCCcC------hhHcc
Confidence 679999999887765532 224689999999987 3333 357889999999999984 44331 22334
Q ss_pred CCCCccEEecccCCCCCCCcc-cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCC
Q 038480 711 GFDSLQRVTIDCCKKLKEVTW-LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNAL 789 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 789 (850)
.+++|+.|++++|. +..++. ...+++|++|++++| .++.++. .+..+++|+.|++++++ +..++ ..
T Consensus 270 ~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N~-i~~~~--~~ 336 (390)
T 3o6n_A 270 KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNS-IVTLK--LS 336 (390)
T ss_dssp TCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred ccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCCc-cceeC--ch
Confidence 68999999999984 555553 567899999999996 5666654 56678999999999964 55554 45
Q ss_pred CCCCccEEeeccCC
Q 038480 790 SFPDLLELFVSECP 803 (850)
Q Consensus 790 ~~~~L~~L~i~~C~ 803 (850)
.+++|+.|++++++
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 67788888887663
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=227.35 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=72.4
Q ss_pred CCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeeccccc-ceeccccccCCCCCCCcCCCccEeecccccccccc-c
Q 038480 709 PYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEM-DEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKI-Y 785 (850)
Q Consensus 709 ~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~ 785 (850)
...+++|++|++++|......+ .+..+++|++|++++|... ..++. .+..+++|+.|++++|. +..+ +
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n~-l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQCQ-LEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTSC-CCEECT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCCc-cccCCh
Confidence 3467788888888885433333 3677888888888887644 24443 67889999999999975 4444 5
Q ss_pred cCCCCCCCccEEeeccCCCCCCCCCCCcccccCceEE
Q 038480 786 WNALSFPDLLELFVSECPKLKKLPLDINSARERKIAI 822 (850)
Q Consensus 786 ~~~~~~~~L~~L~i~~C~~L~~Lp~~~~~~~~~l~~~ 822 (850)
.....+++|++|++++| +++.+|...-..+..++.+
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 56778999999999998 6888776433323444444
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.7e-21 Score=223.88 Aligned_cols=135 Identities=23% Similarity=0.299 Sum_probs=114.4
Q ss_pred EEEEcCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCC
Q 038480 467 FLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSL 544 (850)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i 544 (850)
.+...+..+...|.. -.+++++|++++|.+..++ .+..+++|++|++++|.++++++..|.++++|++|+|++| .+
T Consensus 35 ~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 112 (562)
T 3a79_B 35 MVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112 (562)
T ss_dssp EEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cC
Confidence 444455556655542 2378999999999999885 5789999999999999999998888999999999999999 88
Q ss_pred cccChhhccccCCCeEeeccccccccc--chhhcCCccceeecc------cccccCCCc--cEEeccCCCC
Q 038480 545 KQLPSEISKLVSLQYLNLSETSIKELP--NELKALTNLKCWNLE------QLISSFSDL--RVLRMLDCGF 605 (850)
Q Consensus 545 ~~lp~~i~~l~~L~~L~Ls~~~i~~LP--~~i~~L~~L~~L~l~------~~i~~l~~L--~~L~l~~~~~ 605 (850)
+.+|.. .+++|++|++++|.++.+| ..++++++|++|+++ ..+..+++| ++|++.+|.+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 899977 8999999999999999764 789999999999998 345566666 9999999876
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.7e-21 Score=224.32 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=121.6
Q ss_pred cCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc-c
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ-L 547 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~-l 547 (850)
.+.++...|. .-...+++|++++|.+..++ .+.++++|++|++++|.+..+.+..|.++++|++|+|++| .+.. .
T Consensus 20 ~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 97 (606)
T 3t6q_A 20 ENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMA 97 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEEC
T ss_pred CCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccC
Confidence 3444544443 12357999999999998883 4689999999999999998888888999999999999999 5554 4
Q ss_pred ChhhccccCCCeEeecccccccc-cchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCccccc
Q 038480 548 PSEISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLF 617 (850)
Q Consensus 548 p~~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (850)
|..++.+++|++|++++|.++.+ |..++++++|++|+++ ..+..+++|++|++.+|.+..
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------- 167 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY---------- 167 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE----------
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc----------
Confidence 77899999999999999999987 6778999999999997 223457899999999987543
Q ss_pred CCccccHHHhccCCCCC--EEEEEeCch
Q 038480 618 GGSEILVEELINLKHLD--VLTVSLRSF 643 (850)
Q Consensus 618 ~~~~~~~~~L~~L~~L~--~L~l~~~~~ 643 (850)
.....+..+++|+ .|+++.|..
T Consensus 168 ----~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 168 ----LSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp ----ECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ----cChhhhhhhcccceeEEecCCCcc
Confidence 2344566666666 455544443
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.5e-22 Score=230.27 Aligned_cols=279 Identities=15% Similarity=0.182 Sum_probs=160.7
Q ss_pred cccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCe
Q 038480 483 KWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQY 559 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~ 559 (850)
.+.+++.+++.+|.+..+|. +..+++|++|++++|.+.++++..|..+++|++|+|++| .+..+|. .++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 34567777777777777755 356777888888887777777766777888888888877 5655543 4577788888
Q ss_pred Eeecccccccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhcc
Q 038480 560 LNLSETSIKELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELIN 629 (850)
Q Consensus 560 L~Ls~~~i~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 629 (850)
|+|++|.++.+|.. ++.+++|++|+++ ..++.+++|++|++.+|.+... .+..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~~~~ 190 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------DLSL 190 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------CGGG
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------Chhh
Confidence 88888877777766 3777788888776 2456777788888877765431 1334
Q ss_pred CCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCC
Q 038480 630 LKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREP 709 (850)
Q Consensus 630 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 709 (850)
+++|+.|+++.|.+..+. .+.+|+.|++++|. +..++. ...++|+.|++++|. +... ...
T Consensus 191 l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~-l~~~~~---~~~~~L~~L~L~~n~-l~~~--------~~l 250 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA-------IPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNN-LTDT--------AWL 250 (597)
T ss_dssp CTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSC-CCEEEC---SCCSCCCEEECCSSC-CCCC--------GGG
T ss_pred hhhhhhhhcccCcccccc-------CCchhheeeccCCc-cccccc---ccCCCCCEEECCCCC-CCCC--------hhh
Confidence 555666666655443321 12345555555554 222221 112455555555552 2211 111
Q ss_pred CCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCC
Q 038480 710 YGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNA 788 (850)
Q Consensus 710 ~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~ 788 (850)
+.+++|+.|+|++|.....+| .++.+++|++|+|++| .+..++. ....+|+|+.|+|++| .+..++...
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~ 320 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQ 320 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--------ccccCCCCcEEECCCC-CCCccCccc
Confidence 235555555555553222212 2455555555555553 3333432 3344555555555554 234444444
Q ss_pred CCCCCccEEeeccCCCCCCCCC
Q 038480 789 LSFPDLLELFVSECPKLKKLPL 810 (850)
Q Consensus 789 ~~~~~L~~L~i~~C~~L~~Lp~ 810 (850)
..+++|+.|++++| ++..+|+
T Consensus 321 ~~l~~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 321 PQFDRLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp HHHTTCSEEECCSS-CCCCCCC
T ss_pred ccCCCCCEEECCCC-CCCCcCh
Confidence 44555555555555 3444443
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.3e-21 Score=217.54 Aligned_cols=292 Identities=16% Similarity=0.236 Sum_probs=201.9
Q ss_pred cCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS- 549 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~- 549 (850)
.+..+...+.+..+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+|.
T Consensus 76 s~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~ 152 (466)
T 1o6v_A 76 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISAL 152 (466)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGGG
T ss_pred CCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChhh
Confidence 333444444466677777777777777776667777777777777777766654 677777777777777 5555542
Q ss_pred -------------------hhccccCCCeEeecccccccccchhhcCCccceeecc-------cccccCCCccEEeccCC
Q 038480 550 -------------------EISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDC 603 (850)
Q Consensus 550 -------------------~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~ 603 (850)
.++.+++|++|++++|.+..++ .+..+++|++|+++ ..++.+++|++|++.+|
T Consensus 153 ~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence 1444555555555555555543 25555556655554 22345556666666655
Q ss_pred CCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCC
Q 038480 604 GFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKH 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 683 (850)
.+. .+..+..+++|+.|+++.|.+..... ...+++|+.|++++|. +...+ .+..+++
T Consensus 232 ~l~----------------~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~ 288 (466)
T 1o6v_A 232 QLK----------------DIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISNIS--PLAGLTA 288 (466)
T ss_dssp CCC----------------CCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCCCG--GGTTCTT
T ss_pred Ccc----------------cchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCc-cCccc--cccCCCc
Confidence 533 23467888999999999888766554 2345789999999987 34443 2778999
Q ss_pred cCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCC
Q 038480 684 LDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPG 763 (850)
Q Consensus 684 L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 763 (850)
|+.|++++|. +..+.. .+.+++|+.|++++| .+..++.+..+++|+.|++++| .++.++ .
T Consensus 289 L~~L~L~~n~-l~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~ 348 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISP--------ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDVS---------S 348 (466)
T ss_dssp CSEEECCSSC-CSCCGG--------GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCCG---------G
T ss_pred cCeEEcCCCc-ccCchh--------hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCch---------h
Confidence 9999999984 443411 236899999999999 4666666889999999999997 455542 5
Q ss_pred CCcCCCccEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCCCC
Q 038480 764 LNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLDI 812 (850)
Q Consensus 764 ~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~ 812 (850)
+..+++|+.|++++|. +..+.. ...+++|+.|++++| .++.+|...
T Consensus 349 l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~~ 394 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ-AWTNAPVNY 394 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE-EEECCCBCC
T ss_pred hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC-cccCCchhh
Confidence 6789999999999975 444443 678999999999998 466666543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.2e-21 Score=228.12 Aligned_cols=275 Identities=19% Similarity=0.242 Sum_probs=217.1
Q ss_pred cccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCC
Q 038480 481 VRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSL 557 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L 557 (850)
+..+++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .+..+|.. ++.+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 456789999999999999885 5789999999999999999999998999999999999999 88888876 4899999
Q ss_pred CeEeecccccccccc-hhhcCCccceeecc------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC
Q 038480 558 QYLNLSETSIKELPN-ELKALTNLKCWNLE------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL 630 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 630 (850)
++|++++|.+..+|. .++.+++|++|+++ ..++.+++|+.|++.+|.+.+ +...
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~-------------------l~~~ 210 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-------------------LAIP 210 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE-------------------EECC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc-------------------ccCC
Confidence 999999999997754 69999999999998 346788999999999887542 3445
Q ss_pred CCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCC
Q 038480 631 KHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPY 710 (850)
Q Consensus 631 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 710 (850)
.+|+.|+++.|.+..+.. ...++|+.|++++|.. ... ..+..+++|+.|++++|. +..+ .+..++
T Consensus 211 ~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l-~~~--~~l~~l~~L~~L~Ls~N~-l~~~------~~~~~~ 275 (597)
T 3oja_B 211 IAVEELDASHNSINVVRG-----PVNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNE-LEKI------MYHPFV 275 (597)
T ss_dssp TTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSC-CCEE------ESGGGT
T ss_pred chhheeeccCCccccccc-----ccCCCCCEEECCCCCC-CCC--hhhccCCCCCEEECCCCc-cCCC------CHHHhc
Confidence 678889988887665432 1235889999988873 333 457788999999999884 4333 122334
Q ss_pred CCCCccEEecccCCCCCCCcc-cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCC
Q 038480 711 GFDSLQRVTIDCCKKLKEVTW-LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNAL 789 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 789 (850)
.+++|+.|+|++|. +..++. +..+|+|++|+|++|. +..++. .+..+++|+.|+|++|. +..++ ..
T Consensus 276 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~--------~~~~l~~L~~L~L~~N~-l~~~~--~~ 342 (597)
T 3oja_B 276 KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHNS-IVTLK--LS 342 (597)
T ss_dssp TCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred CccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCc--------ccccCCCCCEEECCCCC-CCCcC--hh
Confidence 68899999999884 555553 5668999999998864 556654 55778999999999864 55543 55
Q ss_pred CCCCccEEeeccCC
Q 038480 790 SFPDLLELFVSECP 803 (850)
Q Consensus 790 ~~~~L~~L~i~~C~ 803 (850)
.+++|+.|+++++|
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 68889999888764
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.3e-22 Score=231.73 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=187.3
Q ss_pred CCCCCccceeecccccCCC------------------Cchhhhc--CCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 503 TPTCPHLVTLFLAINKLDT------------------ITSNFFD--FMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~------------------~~~~~~~--~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
+.++++|++|++++|.+++ +|.. ++ ++++|++|+|++|...+.+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 5678899999999999888 5554 66 8999999999999667788999999999999999
Q ss_pred cccc-ccc--ccchhhcC------Cccceeecc--------c--ccccCCCccEEeccCCCCCCCCCCCcccccCCcccc
Q 038480 563 SETS-IKE--LPNELKAL------TNLKCWNLE--------Q--LISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEIL 623 (850)
Q Consensus 563 s~~~-i~~--LP~~i~~L------~~L~~L~l~--------~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
++|+ ++. +|..++.| ++|++|+++ . .++.+++|++|++.+|.+.+ ..
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g--------------~i 346 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--------------KL 346 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE--------------EC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc--------------ch
Confidence 9997 874 89888887 899999987 3 57788899999999887542 12
Q ss_pred HHHhccCCCCCEEEEEeCchhhhhhhhcCCCcccc-ceEEEeeecCCCCccccccccCc--CCcCeeeeccCCCCccccc
Q 038480 624 VEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSS-TKSLQLRECKDSKSLNISYLADL--KHLDKLDFAYCSNLEEFNY 700 (850)
Q Consensus 624 ~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~l~~l~~ 700 (850)
+ .+..+++|+.|+++.|.+..+ +.....+++ |+.|++++|. +..++ ..+..+ ++|+.|++++|.....+ .
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~l---p~~l~~l~~~L~~L~Ls~N~-l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~-p 419 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAHNK-LKYIP-NIFDAKSVSVMSAIDFSYNEIGSVD-G 419 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEEC---CTTSEEECTTCCEEECCSSC-CSSCC-SCCCTTCSSCEEEEECCSSCTTTTT-T
T ss_pred h-hhCCCCCCCEEECCCCccccc---cHhhhhhcccCcEEEccCCc-Ccccc-hhhhhcccCccCEEECcCCcCCCcc-h
Confidence 2 677888999999998877643 333444566 9999999887 44555 334443 48899999888433321 0
Q ss_pred cccc-CCCCCCCCCCccEEecccCCCCCCCcc--cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccc
Q 038480 701 VELR-TAREPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQD 777 (850)
Q Consensus 701 ~~~~-~~~~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~ 777 (850)
.... .......+++|+.|++++|. +..+|. +..+++|++|++++|. ++.++...+.+.......+++|+.|+|++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcC
Confidence 0000 00000145678888888874 445553 3457888888887754 44554421110000012223666666665
Q ss_pred cccccccccCCC--CCCCccEEeeccCCCCCCCCCCC
Q 038480 778 LSNLEKIYWNAL--SFPDLLELFVSECPKLKKLPLDI 812 (850)
Q Consensus 778 ~~~l~~i~~~~~--~~~~L~~L~i~~C~~L~~Lp~~~ 812 (850)
+ .++.++.... .+++|+.|++++| +++.+|...
T Consensus 498 N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~ 532 (636)
T 4eco_A 498 N-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP 532 (636)
T ss_dssp S-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG
T ss_pred C-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhh
Confidence 4 3445554443 5666666666655 344455443
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.3e-21 Score=232.84 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=183.8
Q ss_pred CCCCCccceeecccccCCC------------------Cchhh-hcCCCcceEEEccCCCCCcccChhhccccCCCeEeec
Q 038480 503 TPTCPHLVTLFLAINKLDT------------------ITSNF-FDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLS 563 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~------------------~~~~~-~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls 563 (850)
+.++++|++|++++|.+++ +|+.+ |.++++|++|+|++|...+.+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4677888888888888877 66553 3388888888888886677888888888888888888
Q ss_pred ccc-ccc--ccchhhcCC-------ccceeecc--------c--ccccCCCccEEeccCCCCCCCCCCCcccccCCcccc
Q 038480 564 ETS-IKE--LPNELKALT-------NLKCWNLE--------Q--LISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEIL 623 (850)
Q Consensus 564 ~~~-i~~--LP~~i~~L~-------~L~~L~l~--------~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
+|+ ++. +|..+++++ +|++|+++ . .++.+++|++|++.+|.+.. .
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~---------------l 588 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH---------------L 588 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB---------------C
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc---------------c
Confidence 887 774 888777776 88888887 2 46778888888888887542 1
Q ss_pred HHHhccCCCCCEEEEEeCchhhhhhhhcCCCcccc-ceEEEeeecCCCCccccccccCc--CCcCeeeeccCCCCccccc
Q 038480 624 VEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSS-TKSLQLRECKDSKSLNISYLADL--KHLDKLDFAYCSNLEEFNY 700 (850)
Q Consensus 624 ~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~l~~l~~ 700 (850)
+ .+.++++|+.|+++.|.+..++ .....+++ |+.|++++|. +..+| ..+..+ ++|+.|++++|.....++.
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred h-hhcCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCcccc
Confidence 2 5777888889998888776433 33344556 8889998887 44555 334444 3488888888843332211
Q ss_pred ccccCCCCCC--CCCCccEEecccCCCCCCCcc--cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecc
Q 038480 701 VELRTAREPY--GFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQ 776 (850)
Q Consensus 701 ~~~~~~~~~~--~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~ 776 (850)
. +...+ .+++|+.|++++|. +..+|. +..+++|+.|+|++| .++.++...+.+..+...++++|+.|+|+
T Consensus 663 l----~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 663 I----SCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp C----SSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred c----hhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECC
Confidence 0 00111 23478888888874 445553 346788888888775 44555542211110112234467777776
Q ss_pred ccccccccccCCC--CCCCccEEeeccCCCCCCCCCCCc
Q 038480 777 DLSNLEKIYWNAL--SFPDLLELFVSECPKLKKLPLDIN 813 (850)
Q Consensus 777 ~~~~l~~i~~~~~--~~~~L~~L~i~~C~~L~~Lp~~~~ 813 (850)
+| .+..++.... .+++|+.|++++| +++.+|....
T Consensus 737 ~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~ 773 (876)
T 4ecn_A 737 FN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPL 773 (876)
T ss_dssp SS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGG
T ss_pred CC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhh
Confidence 65 4555555444 5666777766666 4555654443
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.8e-21 Score=223.59 Aligned_cols=134 Identities=23% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-C
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-P 548 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p 548 (850)
+.++...|. .-.+++++|++++|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|+|++| .+..+ |
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p 97 (606)
T 3vq2_A 20 DQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSP 97 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCT
T ss_pred CCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccCh
Confidence 444444443 12357777788777777764 3567777777777777777776666777777777777777 55555 6
Q ss_pred hhhccccCCCeEeeccccccccc-chhhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 549 SEISKLVSLQYLNLSETSIKELP-NELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 549 ~~i~~l~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
..++++++|++|++++|.+..+| ..++++++|++|+++ ..++.+++|++|++.+|.+..
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 67777777777777777777665 567777777777776 235667777777777776544
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.5e-21 Score=216.67 Aligned_cols=283 Identities=17% Similarity=0.145 Sum_probs=215.5
Q ss_pred cCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
.+..+...|.+..++++++|++++|.+..++ +..+++|++|++++|.+++++ ++.+++|++|++++| .++.+|
T Consensus 50 s~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~-- 122 (457)
T 3bz5_A 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD-- 122 (457)
T ss_dssp CSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--
T ss_pred cCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--
Confidence 3444555567788899999999999999986 889999999999999998874 889999999999999 888886
Q ss_pred hccccCCCeEeecccccccccchhhcCCccceeecc-------cccccCCCccEEeccCCCCCCCCCCCcccccCCcccc
Q 038480 551 ISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEIL 623 (850)
Q Consensus 551 i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
++.+++|++|++++|+++.+| ++.+++|++|+++ -.++.+++|++|++.+|.+++.
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--------------- 185 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--------------- 185 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC---------------
T ss_pred CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee---------------
Confidence 899999999999999999985 8899999999998 2467889999999999986542
Q ss_pred HHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccc
Q 038480 624 VEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVEL 703 (850)
Q Consensus 624 ~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 703 (850)
+ +..+++|+.|+++.|.+..+. ...+++|+.|++++|. ++.++ +..+++|+.|++++| .+..++
T Consensus 186 -~-l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N-~l~~~~---- 249 (457)
T 3bz5_A 186 -D-VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVN-PLTELD---- 249 (457)
T ss_dssp -C-CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS-CCSCCC----
T ss_pred -c-cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCC-cCCCcC----
Confidence 1 667889999999988877652 3345789999999987 44454 677899999999998 444331
Q ss_pred cCCCCCCCCCCc----------cEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEe
Q 038480 704 RTAREPYGFDSL----------QRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCL 773 (850)
Q Consensus 704 ~~~~~~~~l~~L----------~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L 773 (850)
++.+++| +.|++++|.....+| .+.+++|+.|++++|..++.++.....-..-.+..+++|+.|
T Consensus 250 -----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 250 -----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp -----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred -----HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 1234444 455555555444444 467899999999999888887642111111135566777777
Q ss_pred eccccccccccccCCCCCCCccEEeeccC
Q 038480 774 RLQDLSNLEKIYWNALSFPDLLELFVSEC 802 (850)
Q Consensus 774 ~L~~~~~l~~i~~~~~~~~~L~~L~i~~C 802 (850)
+++++ .++.++ ...+++|+.|+++++
T Consensus 324 ~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 324 YLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp ECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred ECCCC-cccccc--cccCCcCcEEECCCC
Confidence 77764 455543 566788888887654
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=4.4e-21 Score=221.78 Aligned_cols=172 Identities=23% Similarity=0.278 Sum_probs=125.2
Q ss_pred CCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
+.++...|.. -.+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.
T Consensus 14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 91 (549)
T 2z81_A 14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSS 91 (549)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCH
T ss_pred CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCH
Confidence 3445555542 2368999999999988773 4688999999999999998888888999999999999999 7777665
Q ss_pred h-hccccCCCeEeeccccccc--ccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCCCCCCCcccc
Q 038480 550 E-ISKLVSLQYLNLSETSIKE--LPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTADPVPEDSVL 616 (850)
Q Consensus 550 ~-i~~l~~L~~L~Ls~~~i~~--LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (850)
. ++.+++|++|++++|.++. .|..++++++|++|+++ ..++.+++|++|++.+|.+.+.........
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 4 8999999999999999884 46788999999999986 246778889999999888654211100000
Q ss_pred --------cCC-ccccHHH-hccCCCCCEEEEEeCchhh
Q 038480 617 --------FGG-SEILVEE-LINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 617 --------~~~-~~~~~~~-L~~L~~L~~L~l~~~~~~~ 645 (850)
... ....... +..+++|+.|+++.|....
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 000 0011111 2457888888888776654
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.5e-21 Score=233.98 Aligned_cols=122 Identities=26% Similarity=0.319 Sum_probs=73.6
Q ss_pred cccccceEEEeeccccccc-ccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCe
Q 038480 481 VRKWRDRRRISLLRNKIVA-LSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQY 559 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~-l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~ 559 (850)
...++++++|++++|.+.. +|.+..+++|++|++++|.+++..+..+..+++|++|++++|...+.+|.. .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 3566777777777777765 355677777777777777777666666777777777777777332333322 4555555
Q ss_pred Eeecccccc-cccchhhcC-Cccceeecc---------cccccCCCccEEeccCCC
Q 038480 560 LNLSETSIK-ELPNELKAL-TNLKCWNLE---------QLISSFSDLRVLRMLDCG 604 (850)
Q Consensus 560 L~Ls~~~i~-~LP~~i~~L-~~L~~L~l~---------~~i~~l~~L~~L~l~~~~ 604 (850)
|++++|.+. .+|..+..+ ++|++|+++ ..++.+++|++|++.+|.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 555555554 455554443 555555554 234455555555555554
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=5.8e-21 Score=223.56 Aligned_cols=272 Identities=18% Similarity=0.184 Sum_probs=206.9
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccc-cchhhcCCccceeecc
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE 586 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~ 586 (850)
+|+.|++++|.+..+++..|..+++|++|++++| .++.+|..++.+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 6888899999988888888999999999999999 8889999899999999999999998876 5678899999999987
Q ss_pred ----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCcc
Q 038480 587 ----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQ 656 (850)
Q Consensus 587 ----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~ 656 (850)
..+..+++|++|++.+|.+... ......+..+++|+.|+++.|...... +.....+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l 399 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETS------------DCCNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKEC 399 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE------------EESTTTTTTCTTCCEEECCSCSCEEEC--TTTTTTC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccc------------cCcchhcccCCCCCEEECCCCcCCcCC--HHHhcCC
Confidence 2367888999999998875431 112446788999999999988765432 2233445
Q ss_pred ccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCC----CCccc
Q 038480 657 SSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLK----EVTWL 732 (850)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~----~l~~l 732 (850)
++|+.|++++|......+...+..+++|+.|++++|. +... .+...+.+++|++|++++|.... ....+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDIS------SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTT------CTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCc------CHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 7899999998874333333447788999999999984 3322 12334468999999999996332 11347
Q ss_pred ccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCCCCCCCCCC
Q 038480 733 AFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLD 811 (850)
Q Consensus 733 ~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~ 811 (850)
..+++|++|++++|. ++.+++ ..+..+++|+.|+|+++.-....+.....+++| .|++++| +++.+|..
T Consensus 473 ~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 473 QTLGRLEILVLSFCD-LSSIDQ-------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp GGCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred ccCCCccEEECCCCc-cCccCh-------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence 889999999999975 555543 267889999999999975444445566788999 9999988 56666543
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=215.91 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=103.6
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~ 566 (850)
++|++++|.++.+|.... ++|++|++++|.++.+++..|..+++|++|+|++| .++.+ |..++++++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 579999999998876433 89999999999999999888999999999999999 77666 7789999999999999999
Q ss_pred cccccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 567 IKELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 567 i~~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
++.+|.. .+++|++|+++ ..++.+++|++|++.+|.+..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999988 89999999998 346789999999999998653
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=4.5e-21 Score=206.26 Aligned_cols=286 Identities=17% Similarity=0.141 Sum_probs=201.5
Q ss_pred cceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeec
Q 038480 485 RDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLS 563 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls 563 (850)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 36788888888888776532 478999999999988888777899999999999999 66665 6788899999999999
Q ss_pred ccccccccchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 564 ETSIKELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 564 ~~~i~~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
+|.++.+|..+. ++|++|+++ ..+..+++|++|++.+|.+... ......+..+ +|+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------------GFEPGAFDGL-KLN 175 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG------------GSCTTSSCSC-CCS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC------------CCCcccccCC-ccC
Confidence 999998887765 788888887 2367788899999988875421 1123345555 788
Q ss_pred EEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCC
Q 038480 635 VLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDS 714 (850)
Q Consensus 635 ~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~ 714 (850)
.|+++.|.+..++. ...++|+.|++++|. +...+...+..+++|+.|++++| .+..+. +.....+++
T Consensus 176 ~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~ 242 (332)
T 2ft3_A 176 YLRISEAKLTGIPK-----DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIE------NGSLSFLPT 242 (332)
T ss_dssp CCBCCSSBCSSCCS-----SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCC------TTGGGGCTT
T ss_pred EEECcCCCCCccCc-----cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCC------hhHhhCCCC
Confidence 88888887665432 123688889998886 44444356778889999999988 344331 112336789
Q ss_pred ccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccc--cccccCCCCC
Q 038480 715 LQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNL--EKIYWNALSF 791 (850)
Q Consensus 715 L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l--~~i~~~~~~~ 791 (850)
|+.|++++| .+..+| .+..+++|++|++++| .++.++...+.+. .....+++|+.|++.+++.. ...+.....+
T Consensus 243 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 243 LRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp CCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc-ccccccccccceEeecCcccccccCccccccc
Confidence 999999988 455665 4888999999999885 4666654322111 11223678899999887632 2222334567
Q ss_pred CCccEEeeccCC
Q 038480 792 PDLLELFVSECP 803 (850)
Q Consensus 792 ~~L~~L~i~~C~ 803 (850)
++|+.+.++++.
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 778888777764
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.3e-20 Score=202.45 Aligned_cols=285 Identities=18% Similarity=0.179 Sum_probs=209.3
Q ss_pred cceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeec
Q 038480 485 RDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLS 563 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls 563 (850)
.+++.++++++.+..+|.. -.++|++|++++|.++.+++..|..+++|++|+|++| .+..+ |..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 3678888888888877653 2478999999999999988878999999999999999 66665 7889999999999999
Q ss_pred ccccccccchhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 564 ETSIKELPNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 564 ~~~i~~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
+|.++.+|..+. ++|++|+++ ..+..+++|++|++.+|.+.. .......+.++++|+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS------------SGIENGAFQGMKKLS 174 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG------------GGBCTTGGGGCTTCC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc------------cCcChhhccCCCCcC
Confidence 999999988765 789999887 336788999999999887542 122345678899999
Q ss_pred EEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCC
Q 038480 635 VLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDS 714 (850)
Q Consensus 635 ~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~ 714 (850)
.|+++.+.+..++. ...++|+.|++++|. +...+...+..+++|+.|++++|. +..+. +.....+++
T Consensus 175 ~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------~~~~~~l~~ 241 (330)
T 1xku_A 175 YIRIADTNITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVD------NGSLANTPH 241 (330)
T ss_dssp EEECCSSCCCSCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEEC------TTTGGGSTT
T ss_pred EEECCCCccccCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeC------hhhccCCCC
Confidence 99999887765432 123689999999887 454444568888999999999884 44331 122336789
Q ss_pred ccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccc---cCCCC
Q 038480 715 LQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIY---WNALS 790 (850)
Q Consensus 715 L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~---~~~~~ 790 (850)
|++|++++|. +..+| ++..+++|++|++++| .++.++...+.+. .....+++|+.|++.+++. ..+. .....
T Consensus 242 L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~ 317 (330)
T 1xku_A 242 LRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-GYNTKKASYSGVSLFSNPV-QYWEIQPSTFRC 317 (330)
T ss_dssp CCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-SCCTTSCCCSEEECCSSSS-CGGGSCGGGGTT
T ss_pred CCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-ccccccccccceEeecCcc-cccccCcccccc
Confidence 9999999994 55665 5888999999999985 4666655332211 1223467889999998763 3222 23445
Q ss_pred CCCccEEeeccC
Q 038480 791 FPDLLELFVSEC 802 (850)
Q Consensus 791 ~~~L~~L~i~~C 802 (850)
+++|+.++++++
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 667777777664
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=7.7e-21 Score=220.88 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=86.9
Q ss_pred ccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCC-CCCc-cccc
Q 038480 657 SSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKL-KEVT-WLAF 734 (850)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~l~-~l~~ 734 (850)
++|+.|++++|......+...+..+++|++|++++|.... . .+.....+++|+.|++++|... ..+| .+..
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-A------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-C------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-c------chhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 3444555544432221121234556667777777663222 1 1233456899999999999643 2344 5889
Q ss_pred CCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccccc-CCCCCCCccEEeeccCC
Q 038480 735 APNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-NALSFPDLLELFVSECP 803 (850)
Q Consensus 735 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~i~~C~ 803 (850)
+++|++|+|++|. ++.+++ ..+..+++|+.|++++| .++.++. ....+++|+.|++++++
T Consensus 469 l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLSQCQ-LEQLSP-------TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCc-cccCCh-------hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 9999999999975 555533 26788999999999997 4666554 45678999999999885
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.1e-20 Score=212.89 Aligned_cols=307 Identities=16% Similarity=0.201 Sum_probs=208.4
Q ss_pred cccccccceEEEeecccccc-cc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc-cChh--hc
Q 038480 479 PEVRKWRDRRRISLLRNKIV-AL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ-LPSE--IS 552 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~-~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~--i~ 552 (850)
..+..+++++.|++++|.+. .+ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .+.. .|.. ++
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 126 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFK 126 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCccccc
Confidence 34667889999999998875 34 23678899999999999988887777899999999999999 5653 4544 88
Q ss_pred cccCCCeEeecccccccc-cch-hhcCCccceeecc---------cccccC--CCccEEeccCCCCCCCCCCCc------
Q 038480 553 KLVSLQYLNLSETSIKEL-PNE-LKALTNLKCWNLE---------QLISSF--SDLRVLRMLDCGFTADPVPED------ 613 (850)
Q Consensus 553 ~l~~L~~L~Ls~~~i~~L-P~~-i~~L~~L~~L~l~---------~~i~~l--~~L~~L~l~~~~~~~~~~~~~------ 613 (850)
.+++|++|++++|.+..+ |.. +..+++|++|+++ ..+..+ .+|+.|++.+|.+...+....
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 899999999999998876 555 7889999999987 112222 334444444443332111000
Q ss_pred -----ccc-----cCC--ccccHHHh---ccCCCCCEEEEEeCchhhhh----------hhhcCCCccccceEEEeeecC
Q 038480 614 -----SVL-----FGG--SEILVEEL---INLKHLDVLTVSLRSFCALQ----------KLWSSPKLQSSTKSLQLRECK 668 (850)
Q Consensus 614 -----~~~-----~~~--~~~~~~~L---~~L~~L~~L~l~~~~~~~l~----------~l~~~~~~~~~L~~L~l~~~~ 668 (850)
... .+. ....+..+ ...++|+.|+++.+...... ......-..++|+.|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 000 000 11122222 33478888888765432110 000000012589999999987
Q ss_pred CCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCC-c-ccccCCCCceEEeecc
Q 038480 669 DSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEV-T-WLAFAPNLKFVHIERC 746 (850)
Q Consensus 669 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-~-~l~~l~~L~~L~L~~c 746 (850)
.. ......+..+++|+.|++++|. +..+ .+..++.+++|++|++++|. +..+ + .+..+++|++|+|++|
T Consensus 287 l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 287 IF-ALLKSVFSHFTDLEQLTLAQNE-INKI------DDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CC-EECTTTTTTCTTCCEEECTTSC-CCEE------CTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS
T ss_pred cc-ccchhhcccCCCCCEEECCCCc-cccc------ChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC
Confidence 43 3333568889999999999994 4433 12344578999999999995 4444 3 3788999999999996
Q ss_pred cccceeccccccCCCCCCCcCCCccEeeccccccccccccC-CCCCCCccEEeeccCCC
Q 038480 747 YEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWN-ALSFPDLLELFVSECPK 804 (850)
Q Consensus 747 ~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~i~~C~~ 804 (850)
. ++.+++ ..+..+++|+.|+|+++ .++.++.. ...+++|+.|++++++-
T Consensus 358 ~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 358 H-IRALGD-------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp C-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred c-ccccCh-------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 4 566544 26788999999999996 57777654 46789999999998753
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=5.4e-20 Score=212.93 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=104.9
Q ss_pred ccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEee
Q 038480 484 WRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNL 562 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~L 562 (850)
+...+++++++|+++.+|... .++|++|++++|.++.+++..|.++++|++|+|++| .++.+ |..++.+++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 344589999999999987632 389999999999999999888999999999999999 77766 678999999999999
Q ss_pred cccccccccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 563 SETSIKELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 563 s~~~i~~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
++|.++.+|.. .+++|++|+++ ..++.+++|++|++.+|.+..
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99999999988 89999999997 246789999999999998764
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=3.2e-21 Score=231.18 Aligned_cols=311 Identities=19% Similarity=0.158 Sum_probs=169.2
Q ss_pred cccccceEEEeecccccccc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccc-cCC
Q 038480 481 VRKWRDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKL-VSL 557 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l-~~L 557 (850)
+..++++++|++++|.+... ..+..+++|++|++++|.+.+..+.. .+++|++|++++|...+.+|..++.+ ++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 44555666666666655432 23455556666666665554333321 45555555555552222555555443 555
Q ss_pred CeEeecccccc-cccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCCCCCCCccc----c-----c
Q 038480 558 QYLNLSETSIK-ELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTADPVPEDSV----L-----F 617 (850)
Q Consensus 558 ~~L~Ls~~~i~-~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~----~-----~ 617 (850)
++|++++|.+. .+|..++.+++|++|++. ..+..+++|++|++.+|.+.+..+..... . .
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 55555555555 445555555555555554 11445555555555555433110000000 0 0
Q ss_pred CC--ccccHHHhcc--CCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCC
Q 038480 618 GG--SEILVEELIN--LKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCS 693 (850)
Q Consensus 618 ~~--~~~~~~~L~~--L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 693 (850)
.. ....+..+.. +++|+.|+++.|.+... ++.....+++|+.|++++|......+ ..+..+++|+.|++++|.
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--CCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccc--cCHHHhcCCCCCEEECcCCcccCccc-HHHhcCCCCCEEECCCCc
Confidence 00 0011122222 45566666665554321 11122234567777777665333333 346666777777777774
Q ss_pred CCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccE
Q 038480 694 NLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQC 772 (850)
Q Consensus 694 ~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~ 772 (850)
....+ +...+.+++|++|++++|.....+| .+..+++|++|+|++|.....+|. .++.+++|+.
T Consensus 454 l~~~~-------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--------~~~~l~~L~~ 518 (768)
T 3rgz_A 454 LEGEI-------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK--------WIGRLENLAI 518 (768)
T ss_dssp CCSCC-------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCE
T ss_pred ccCcC-------CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh--------HHhcCCCCCE
Confidence 33222 2223356778888888875444444 477788888888887665445544 5667888888
Q ss_pred eeccccccccccccCCCCCCCccEEeeccCCCCCCCCCC
Q 038480 773 LRLQDLSNLEKIYWNALSFPDLLELFVSECPKLKKLPLD 811 (850)
Q Consensus 773 L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~ 811 (850)
|+|++|.-...++.....+++|+.|++++|+-...+|..
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 888887655567777777888888888887655456654
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=4.5e-20 Score=213.27 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=87.7
Q ss_pred ccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc--cChhhcccc
Q 038480 480 EVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ--LPSEISKLV 555 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~l~ 555 (850)
.+..++++++|++++|.+..++ .+..+++|++|++++|.+.++++..|+++++|++|++++| .+.. .|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 4667889999999999988874 3688899999999999998888888899999999999999 6663 466788888
Q ss_pred CCCeEeecccc-ccccc-chhhcCCccceeecc
Q 038480 556 SLQYLNLSETS-IKELP-NELKALTNLKCWNLE 586 (850)
Q Consensus 556 ~L~~L~Ls~~~-i~~LP-~~i~~L~~L~~L~l~ 586 (850)
+|++|++++|. +..+| ..+..+++|++|+++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 99999998886 66776 467888888888776
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.3e-20 Score=219.23 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=112.6
Q ss_pred EcCCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc
Q 038480 470 STGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL 547 (850)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l 547 (850)
..+..+...|.. -.+++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|+|++| .+..+
T Consensus 11 cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l 88 (680)
T 1ziw_A 11 CSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 88 (680)
T ss_dssp CCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCC
T ss_pred CCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCcc
Confidence 334455555532 23689999999999988753 688999999999999999988888999999999999999 88888
Q ss_pred Ch-hhccccCCCeEeeccccccccc-chhhcCCccceeecc---------cccccCCCccEEeccCCCCCC
Q 038480 548 PS-EISKLVSLQYLNLSETSIKELP-NELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 548 p~-~i~~l~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
|. .++++++|++|++++|.+..+| ..++++++|++|+++ ..++.+++|++|++.+|.+.+
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 86 5899999999999999999886 578999999999997 345688899999999887654
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=9.5e-20 Score=220.73 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=114.8
Q ss_pred EEEEcCCccccCcccccccceEEEeecccccccc--cCCCCCCccceeeccccc-CCCCchhhhcCCCcceEEEccCCCC
Q 038480 467 FLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINK-LDTITSNFFDFMPSLRVLNLSKNLS 543 (850)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~~ 543 (850)
.+...+.++...|. ..+++++|++++|.+..+ ..+.++++|++|++++|. +..+++..|.++++|++|+|++| .
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 34445556666776 567999999999999887 357899999999999995 55666777999999999999999 6
Q ss_pred Cccc-ChhhccccCCCeEeeccccccc-ccch--hhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 544 LKQL-PSEISKLVSLQYLNLSETSIKE-LPNE--LKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 544 i~~l-p~~i~~l~~L~~L~Ls~~~i~~-LP~~--i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
+..+ |..++++++|++|+|++|.+.. +|.. +++|++|++|+++ ..++.+++|++|++.+|.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 6654 8899999999999999999985 5665 8999999999997 246889999999999998654
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=219.73 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=121.9
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~ 566 (850)
+..+.++++++.+|. ..++|++|++++|.++.+.+..|.++++|++|+|++|..+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456777888888887 6689999999999999988888999999999999999667777 7789999999999999999
Q ss_pred cccc-cchhhcCCccceeecc-----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 567 IKEL-PNELKALTNLKCWNLE-----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 567 i~~L-P~~i~~L~~L~~L~l~-----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
+..+ |..++++++|++|+++ ..++.+++|++|++++|.+.+.. ....++++++|+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------------~~~~~~~L~~L~ 151 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------------LHPSFGKLNSLK 151 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------------CCGGGGTCSSCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-------------cchhHhhCCCCC
Confidence 9976 8899999999999998 12778999999999999876421 124578899999
Q ss_pred EEEEEeCchhh
Q 038480 635 VLTVSLRSFCA 645 (850)
Q Consensus 635 ~L~l~~~~~~~ 645 (850)
.|+++.|.+..
T Consensus 152 ~L~Ls~N~i~~ 162 (844)
T 3j0a_A 152 SIDFSSNQIFL 162 (844)
T ss_dssp EEEEESSCCCC
T ss_pred EEECCCCcCCe
Confidence 99999887643
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=193.66 Aligned_cols=229 Identities=20% Similarity=0.300 Sum_probs=124.1
Q ss_pred CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccceeecc
Q 038480 507 PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 507 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
++++.|++++|.++.+|+. +..+++|++|+|++| .+..+|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3445555555555444443 333555555555555 44455555555555555555555555555544444444333332
Q ss_pred cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeee
Q 038480 587 QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRE 666 (850)
Q Consensus 587 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 666 (850)
+|...+. +|.... .......+.++++|+.|+++.|.+..++. ....+++|+.|++++
T Consensus 159 ---------------~n~~~~~-~p~~~~----~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 159 ---------------ACPELTE-LPEPLA----STDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRN 215 (328)
T ss_dssp ---------------EETTCCC-CCSCSE----EEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEES
T ss_pred ---------------CCCCccc-cChhHh----hccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccC
Confidence 2111110 000000 00001113334445555555444432221 122234555555555
Q ss_pred cCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeec
Q 038480 667 CKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIER 745 (850)
Q Consensus 667 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~ 745 (850)
|. +..++ ..+..+++|+.|++++|.....+ +...+.+++|+.|+|++|.....+| .+..+++|++|+|++
T Consensus 216 N~-l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~-------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 216 SP-LSALG-PAIHHLPKLEELDLRGCTALRNY-------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp SC-CCCCC-GGGGGCTTCCEEECTTCTTCCBC-------CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CC-CCcCc-hhhccCCCCCEEECcCCcchhhh-------HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 54 22333 24667778888888887655544 3344567888888888887777776 477888888888888
Q ss_pred ccccceeccccccCCCCCCCcCCCccEeeccc
Q 038480 746 CYEMDEIISVWKLGEVPGLNPFAKLQCLRLQD 777 (850)
Q Consensus 746 c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~ 777 (850)
|+.++.+|. .+..+++|+.+.+..
T Consensus 287 n~~~~~iP~--------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 287 CVNLSRLPS--------LIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCCCCG--------GGGGSCTTCEEECCG
T ss_pred CCchhhccH--------HHhhccCceEEeCCH
Confidence 888888776 677788888887764
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=8.1e-20 Score=194.31 Aligned_cols=246 Identities=13% Similarity=0.090 Sum_probs=120.7
Q ss_pred ceEEEeeccccccc---c-cCCCCCCccceeeccc-ccCCCCchhhhcCCCcceEEEccCCCCCc-ccChhhccccCCCe
Q 038480 486 DRRRISLLRNKIVA---L-SETPTCPHLVTLFLAI-NKLDTITSNFFDFMPSLRVLNLSKNLSLK-QLPSEISKLVSLQY 559 (850)
Q Consensus 486 ~l~~L~l~~n~~~~---l-~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~l~~L~~ 559 (850)
++++|++++|.+.. + +.+..+++|++|++++ |.+.+..+..|..+++|++|+|++| .+. .+|..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCE
Confidence 45566666655543 2 2344555555555553 4444333334555555555555555 333 55555555555555
Q ss_pred Eeecccccc-cccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCC-CCCEEE
Q 038480 560 LNLSETSIK-ELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLK-HLDVLT 637 (850)
Q Consensus 560 L~Ls~~~i~-~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~ 637 (850)
|++++|.+. .+|..+. .+++|++|++.+|.+.+ ..+..+..++ +|+.|+
T Consensus 130 L~Ls~N~l~~~~p~~~~---------------~l~~L~~L~L~~N~l~~--------------~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS---------------SLPNLVGITFDGNRISG--------------AIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp EECCSSEEESCCCGGGG---------------GCTTCCEEECCSSCCEE--------------ECCGGGGCCCTTCCEEE
T ss_pred EeCCCCccCCcCChHHh---------------cCCCCCeEECcCCcccC--------------cCCHHHhhhhhcCcEEE
Confidence 555555555 4454444 44455555555655321 1234455555 666666
Q ss_pred EEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccE
Q 038480 638 VSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQR 717 (850)
Q Consensus 638 l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~ 717 (850)
++.|.+.... +.....+ .|+.|++++|......+ ..+..+++|+.|++++|.....+ +....+++|++
T Consensus 181 L~~N~l~~~~--~~~~~~l-~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~L~~ 248 (313)
T 1ogq_A 181 ISRNRLTGKI--PPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDL--------GKVGLSKNLNG 248 (313)
T ss_dssp CCSSEEEEEC--CGGGGGC-CCSEEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBG--------GGCCCCTTCCE
T ss_pred CcCCeeeccC--ChHHhCC-cccEEECcCCcccCcCC-HHHhcCCCCCEEECCCCceeeec--------CcccccCCCCE
Confidence 6655543210 0001111 25555555554221222 34555666666666665322111 11224556666
Q ss_pred EecccCCCCCCCc-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccc
Q 038480 718 VTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLE 782 (850)
Q Consensus 718 L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 782 (850)
|++++|.....+| .+..+++|++|+|++|.....+| ....+++|+.|++.+++.+.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEEE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCcc
Confidence 6666664332333 35556666666666644333332 22455556666665555443
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=7.7e-19 Score=208.43 Aligned_cols=165 Identities=22% Similarity=0.248 Sum_probs=128.9
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~ 566 (850)
+.++.+++++..+|... .+++++|++++|.++.+++..|.++++|++|+|++| .+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 45777888888887532 379999999999999999988999999999999999 66554 7788999999999999999
Q ss_pred cccccc-hhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEE
Q 038480 567 IKELPN-ELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVL 636 (850)
Q Consensus 567 i~~LP~-~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 636 (850)
++.+|. .++.+++|++|+++ ..++.+++|++|++.+|.+.+.. +..+.++++|+.|
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L 150 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--------------LGTQVQLENLQEL 150 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--------------CCSSSCCTTCCEE
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC--------------chhhcccccCCEE
Confidence 999987 59999999999997 34788999999999999876432 2335677888888
Q ss_pred EEEeCchhhhhhhhcCCCccccceEEEeeecC
Q 038480 637 TVSLRSFCALQKLWSSPKLQSSTKSLQLRECK 668 (850)
Q Consensus 637 ~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 668 (850)
+++.|.+..+..........++|+.|++++|.
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCc
Confidence 88877655433211111112567777777764
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1e-18 Score=205.88 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=91.0
Q ss_pred ccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCC-c-ccccCCCCceEEeecccccceeccc
Q 038480 678 LADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEV-T-WLAFAPNLKFVHIERCYEMDEIISV 755 (850)
Q Consensus 678 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~ 755 (850)
+..+++++.++++.|. +..+ .+.....+++|+.|++++|.....+ | .+..+++|++|+|++| .++.+++
T Consensus 441 ~~~l~~l~~l~ls~n~-l~~~------~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~- 511 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTH-TRVA------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP- 511 (635)
T ss_dssp TTTCTTCCEEECTTSC-CEEC------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-
T ss_pred cccccccccccccccc-cccc------cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-
Confidence 4455666666666652 2211 1223346789999999998655433 2 4788999999999996 5667655
Q ss_pred cccCCCCCCCcCCCccEeecccccccccccc-CCCCCCCccEEeeccCCCCCCCCCC-Cccc---------ccCceEEEe
Q 038480 756 WKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-NALSFPDLLELFVSECPKLKKLPLD-INSA---------RERKIAIRG 824 (850)
Q Consensus 756 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~i~~C~~L~~Lp~~-~~~~---------~~~l~~~~~ 824 (850)
..+..+++|+.|+|+++ .++.++. ....+++|+.|+++++ +++.++.. .... ..+.-.|+|
T Consensus 512 ------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 512 ------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 26788999999999996 5666654 4567899999999988 56665443 2211 233345778
Q ss_pred hhhhh
Q 038480 825 EQRWW 829 (850)
Q Consensus 825 ~~~~~ 829 (850)
+..|.
T Consensus 584 ~~~~~ 588 (635)
T 4g8a_A 584 EHQSF 588 (635)
T ss_dssp GGHHH
T ss_pred CcHHH
Confidence 87765
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=4.2e-19 Score=189.95 Aligned_cols=222 Identities=19% Similarity=0.276 Sum_probs=179.7
Q ss_pred CCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCC
Q 038480 529 FMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTAD 608 (850)
Q Consensus 529 ~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~ 608 (850)
...++++|+|++| .+..+|..++++++|++|++++|.++.+|..++.+++| ++|++.+|.+..
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L---------------~~L~Ls~n~l~~- 141 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL---------------ETLTLARNPLRA- 141 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTC---------------SEEEEESCCCCC-
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCC---------------CEEECCCCcccc-
Confidence 3578999999999 89999999999999999999999999999777665554 555666776442
Q ss_pred CCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCC---------CccccceEEEeeecCCCCcccccccc
Q 038480 609 PVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSP---------KLQSSTKSLQLRECKDSKSLNISYLA 679 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~l~ 679 (850)
.+..+.++++|+.|+++.|.... .++... ..+++|+.|++++|. ++.++ ..+.
T Consensus 142 --------------lp~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-~~l~ 203 (328)
T 4fcg_A 142 --------------LPASIASLNRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLP-ASIA 203 (328)
T ss_dssp --------------CCGGGGGCTTCCEEEEEEETTCC--CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC-GGGG
T ss_pred --------------CcHHHhcCcCCCEEECCCCCCcc--ccChhHhhccchhhhccCCCCCEEECcCCC-cCcch-Hhhc
Confidence 34468889999999999865432 122211 226799999999997 45666 4588
Q ss_pred CcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCceEEeecccccceecccccc
Q 038480 680 DLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKFVHIERCYEMDEIISVWKL 758 (850)
Q Consensus 680 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~ 758 (850)
.+++|+.|++++|. +..+ +...+.+++|++|++++|.....+| .++.+++|++|+|++|+..+.++.
T Consensus 204 ~l~~L~~L~L~~N~-l~~l-------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~---- 271 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSAL-------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL---- 271 (328)
T ss_dssp GCTTCCEEEEESSC-CCCC-------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT----
T ss_pred CCCCCCEEEccCCC-CCcC-------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch----
Confidence 89999999999994 4444 2234468999999999998877777 488999999999999998888876
Q ss_pred CCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeecc
Q 038480 759 GEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSE 801 (850)
Q Consensus 759 ~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~ 801 (850)
.+..+++|+.|+|++|+.+..+|.....+++|+.+.+..
T Consensus 272 ----~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 ----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ----TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ----hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 678899999999999999999999899999999998874
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.7e-19 Score=190.29 Aligned_cols=232 Identities=14% Similarity=0.154 Sum_probs=155.5
Q ss_pred cCcccccccceEEEeecc-ccccc-cc-CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCc-ccChhhc
Q 038480 477 IAPEVRKWRDRRRISLLR-NKIVA-LS-ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLK-QLPSEIS 552 (850)
Q Consensus 477 ~~~~~~~~~~l~~L~l~~-n~~~~-l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~ 552 (850)
.++.+..++++++|++++ |.+.. +| .+..+++|++|++++|.+.+..+..|..+++|++|+|++| .+. .+|..++
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHh
Confidence 345677788899999984 77764 33 4678889999999998887655566888999999999998 555 7888888
Q ss_pred cccCCCeEeecccccc-cccchhhcCC-ccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC
Q 038480 553 KLVSLQYLNLSETSIK-ELPNELKALT-NLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL 630 (850)
Q Consensus 553 ~l~~L~~L~Ls~~~i~-~LP~~i~~L~-~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 630 (850)
.+++|++|++++|.++ .+|..+..++ +|++|++ .+|.+.+ ..+..+..+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L---------------~~N~l~~--------------~~~~~~~~l 197 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---------------SRNRLTG--------------KIPPTFANL 197 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC---------------CSSEEEE--------------ECCGGGGGC
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC---------------cCCeeec--------------cCChHHhCC
Confidence 8999999999999888 7887777665 5555544 4443221 122233444
Q ss_pred CCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCC
Q 038480 631 KHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPY 710 (850)
Q Consensus 631 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 710 (850)
+ |+.|+++.|.+.... +.....+++|+.|++++|......+ .+..+++|++|++++|.....+ +....
T Consensus 198 ~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~-------p~~l~ 265 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTL-------PQGLT 265 (313)
T ss_dssp C-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECC-------CGGGG
T ss_pred c-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcC-------ChHHh
Confidence 4 556655555443221 1112234566667776665332332 2566788899999888433233 22334
Q ss_pred CCCCccEEecccCCCCCCCcccccCCCCceEEeecccccc
Q 038480 711 GFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMD 750 (850)
Q Consensus 711 ~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~ 750 (850)
.+++|+.|++++|.....+|....+++|+.|++++|+.+.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 6788999999988655567767788888888888876443
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.1e-18 Score=205.54 Aligned_cols=134 Identities=24% Similarity=0.281 Sum_probs=112.6
Q ss_pred CCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
+.++..+|.. -..++++|++++|.++.++ .|.++++|++|+|++|.++.+++..|.++++|++|+|++| .++.+|.
T Consensus 40 ~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 3445555531 2357999999999999985 4789999999999999999999988999999999999999 8888875
Q ss_pred -hhccccCCCeEeecccccccccc-hhhcCCccceeecc----------cccccCCCccEEeccCCCCCC
Q 038480 550 -EISKLVSLQYLNLSETSIKELPN-ELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 550 -~i~~l~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
.++++++|++|++++|+++.+|. .+++|++|++|+++ ..++.+++|++|++.+|.+.+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 57899999999999999998876 48999999999987 335778999999999887643
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.6e-18 Score=197.87 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=41.5
Q ss_pred cceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 485 RDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
++++.|++++|.+..+|. .+++|++|++++|.++.++. .+++|++|+|++| .+..+|. .+.+|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 345555555554444443 34445555555554444443 3444555555554 4444443 334455555555
Q ss_pred cccccccchhhcCCccceeecc
Q 038480 565 TSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
|+++.+|.. +++|++|+++
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECC
T ss_pred CCCCcCCCC---CCCCCEEECc
Confidence 554444432 2444444443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1e-18 Score=187.85 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=194.7
Q ss_pred ccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEe
Q 038480 484 WRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLN 561 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~ 561 (850)
.++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++| .+..+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 468999999999998884 4789999999999999999988888999999999999999 8889998776 8999999
Q ss_pred ecccccccccch-hhcCCccceeecc-----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhcc
Q 038480 562 LSETSIKELPNE-LKALTNLKCWNLE-----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELIN 629 (850)
Q Consensus 562 Ls~~~i~~LP~~-i~~L~~L~~L~l~-----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 629 (850)
+++|.+..+|.. +..+++|++|+++ ..+..+ +|++|++.+|.+...+. .+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~---------------~~-- 191 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---------------DL-- 191 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS---------------SS--
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc---------------cc--
Confidence 999999988765 8899999999997 223344 89999999998765321 11
Q ss_pred CCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCC
Q 038480 630 LKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREP 709 (850)
Q Consensus 630 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 709 (850)
.++|+.|+++.|.+..+.. .....+++|+.|++++|. +..++...+..+++|+.|++++| .+..+ +...
T Consensus 192 ~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-------p~~l 260 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRV-------PAGL 260 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBC-------CTTG
T ss_pred cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeec-------Chhh
Confidence 2678888888887765432 223345789999999987 44444356788999999999998 45545 3334
Q ss_pred CCCCCccEEecccCCCCCCCcc--cc------cCCCCceEEeecccccc-eeccccccCCCCCCCcCCCccEeeccccc
Q 038480 710 YGFDSLQRVTIDCCKKLKEVTW--LA------FAPNLKFVHIERCYEMD-EIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 710 ~~l~~L~~L~L~~~~~l~~l~~--l~------~l~~L~~L~L~~c~~l~-~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
..+++|+.|++++|. ++.++. +. ..+.|+.|++++|+... .+.+ ..+..+++|+.|+++++.
T Consensus 261 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-------GGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCc-------ccccccchhhhhhccccc
Confidence 468999999999984 555542 22 25789999999976431 2222 256678889999988763
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=3.5e-18 Score=183.48 Aligned_cols=256 Identities=21% Similarity=0.215 Sum_probs=196.8
Q ss_pred ccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEe
Q 038480 484 WRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLN 561 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~ 561 (850)
.++++.|++++|.+..++. +..+++|++|++++|.++.+.+..|..+++|++|++++| .++.+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 3689999999999998854 789999999999999999997778999999999999999 8889997765 7999999
Q ss_pred ecccccccccc-hhhcCCccceeecc-----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhcc
Q 038480 562 LSETSIKELPN-ELKALTNLKCWNLE-----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELIN 629 (850)
Q Consensus 562 Ls~~~i~~LP~-~i~~L~~L~~L~l~-----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 629 (850)
+++|.+..+|. .+..+++|++|+++ ..+..+++|++|++.+|.+...+. .+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---------------~~-- 190 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---------------GL-- 190 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---------------SC--
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---------------cc--
Confidence 99999998865 58899999999997 235778999999999998765221 11
Q ss_pred CCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCC
Q 038480 630 LKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREP 709 (850)
Q Consensus 630 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 709 (850)
.++|+.|+++.|.+..+.. .....+++|+.|++++|. +...+...+..+++|+.|++++| .+..+ +...
T Consensus 191 ~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-------p~~l 259 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKV-------PGGL 259 (330)
T ss_dssp CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSC-------CTTT
T ss_pred cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccC-------Chhh
Confidence 2689999999887765421 122335789999999987 45554456788999999999999 45444 3344
Q ss_pred CCCCCccEEecccCCCCCCCcc--cc------cCCCCceEEeecccccc-eeccccccCCCCCCCcCCCccEeecccc
Q 038480 710 YGFDSLQRVTIDCCKKLKEVTW--LA------FAPNLKFVHIERCYEMD-EIISVWKLGEVPGLNPFAKLQCLRLQDL 778 (850)
Q Consensus 710 ~~l~~L~~L~L~~~~~l~~l~~--l~------~l~~L~~L~L~~c~~l~-~i~~~~~~~~~~~~~~~~~L~~L~L~~~ 778 (850)
..+++|++|++++|. ++.++. +. ..+.|+.|++++++... .+++ ..+..+++|+.++|+++
T Consensus 260 ~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-------~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-------STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG-------GGGTTCCCGGGEEC---
T ss_pred ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCc-------cccccccceeEEEeccc
Confidence 578999999999994 555542 21 35789999999876322 1222 24566788888888764
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=9.6e-18 Score=187.43 Aligned_cols=267 Identities=22% Similarity=0.245 Sum_probs=140.2
Q ss_pred cceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 485 RDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
++++.|++++|.+..++... ++|++|++++|.++++| . |+.+++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 46666666666666554332 56777777777766655 2 667777777777777 666666433 4677777777
Q ss_pred cccccccchhhcCCccceeecc-ccc----ccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEE
Q 038480 565 TSIKELPNELKALTNLKCWNLE-QLI----SSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVS 639 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~-~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 639 (850)
|.++.+| .++.+++|++|+++ ..+ ...++|++|++.+|.+.. +..+..+++|+.|+++
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~----------------lp~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE----------------LPELQNLPFLTTIYAD 245 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS----------------CCCCTTCTTCCEEECC
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc----------------ccccCCCCCCCEEECC
Confidence 7777766 46777777777776 111 223467777777766432 1236678888888888
Q ss_pred eCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCccccccc--c-------cCCCCC-
Q 038480 640 LRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVE--L-------RTAREP- 709 (850)
Q Consensus 640 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~--~-------~~~~~~- 709 (850)
.|.+..++. .+++|+.|++++|. +..++. .+++|+.|++++|. +..++... . -.....
T Consensus 246 ~N~l~~l~~------~~~~L~~L~l~~N~-l~~l~~----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~ 313 (454)
T 1jl5_A 246 NNLLKTLPD------LPPSLEALNVRDNY-LTDLPE----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLC 313 (454)
T ss_dssp SSCCSSCCS------CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEEC
T ss_pred CCcCCcccc------cccccCEEECCCCc-ccccCc----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCccc
Confidence 777655432 23577777777765 333331 13566666666662 33220000 0 000000
Q ss_pred CCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccc--ccccC
Q 038480 710 YGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLE--KIYWN 787 (850)
Q Consensus 710 ~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~i~~~ 787 (850)
...++|+.|++++|. +..+|. .+++|++|++++| .++.++ . .+++|+.|+++++.-.. .++..
T Consensus 314 ~~~~~L~~L~Ls~N~-l~~lp~--~~~~L~~L~L~~N-~l~~lp---------~--~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 314 DLPPSLEELNVSNNK-LIELPA--LPPRLERLIASFN-HLAEVP---------E--LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCC---------C--CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CCcCcCCEEECCCCc-cccccc--cCCcCCEEECCCC-cccccc---------c--hhhhccEEECCCCCCCcCCCChHH
Confidence 012356666666653 333432 2466666666664 333332 1 35677777777653222 23333
Q ss_pred CCCC-------------CCccEEeeccCC
Q 038480 788 ALSF-------------PDLLELFVSECP 803 (850)
Q Consensus 788 ~~~~-------------~~L~~L~i~~C~ 803 (850)
...+ ++|+.|++++++
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCEEECCC---------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCc
Confidence 3222 567777777663
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=184.75 Aligned_cols=185 Identities=19% Similarity=0.229 Sum_probs=93.8
Q ss_pred EeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccccc
Q 038480 490 ISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETSIK 568 (850)
Q Consensus 490 L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~ 568 (850)
.+.+++.++.+|.. -.++|++|++++|.++.+++..|.++++|++|++++| .++.+ |..++++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 55555666655542 2246666666666666666655666666666666666 55544 345666666666666666666
Q ss_pred cccch-hhcCCccceeecc--------c--ccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 569 ELPNE-LKALTNLKCWNLE--------Q--LISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 569 ~LP~~-i~~L~~L~~L~l~--------~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
.+|.. ++.+++|++|+++ . .+..+++|++|++.+|... .......+.++++|+.|+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------------~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-------------TKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-------------CEECTTTTTTCCEEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-------------cccCHHHccCCCCCCEEE
Confidence 66554 4555555555443 0 2334455555555554211 011122344555555555
Q ss_pred EEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccC
Q 038480 638 VSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYC 692 (850)
Q Consensus 638 l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 692 (850)
++.|.+.... +.....+++|+.|++++|. ++.++...+..+++|+.|++++|
T Consensus 181 l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 181 IDASDLQSYE--PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEETTCCEEC--TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred CCCCCcCccC--HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 5555443321 1112223455555555544 23332222333455555555555
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.9e-19 Score=192.06 Aligned_cols=265 Identities=15% Similarity=0.133 Sum_probs=173.1
Q ss_pred eEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 487 RRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 487 l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
++..+++.+.+...+ .+..+++|++|++++|.++.+++..|..+++|++|+|++| .+..++. ++.+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 444455555554331 1245678888888888888888777888888888888888 6666554 78888888888888
Q ss_pred cccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchh
Q 038480 565 TSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFC 644 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 644 (850)
|.++.+|. +++|++|++.+|.+...+ ...+++|+.|+++.|.+.
T Consensus 90 n~l~~l~~-------------------~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 90 NYVQELLV-------------------GPSIETLHAANNNISRVS-----------------CSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp SEEEEEEE-------------------CTTCCEEECCSSCCSEEE-----------------ECCCSSCEEEECCSSCCC
T ss_pred CccccccC-------------------CCCcCEEECCCCccCCcC-----------------ccccCCCCEEECCCCCCC
Confidence 88776652 244555555555533210 112455666666666555
Q ss_pred hhhhhhcCCCccccceEEEeeecCCCCccccccc-cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccC
Q 038480 645 ALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYL-ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCC 723 (850)
Q Consensus 645 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 723 (850)
.+... ....+++|+.|++++|. +...+...+ ..+++|+.|++++|. +..+ +. ...+++|++|++++|
T Consensus 134 ~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-------~~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 134 MLRDL--DEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV-------KG-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp SGGGB--CTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE-------EC-CCCCTTCCEEECCSS
T ss_pred Cccch--hhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc-------cc-ccccccCCEEECCCC
Confidence 44321 22334677888887776 333332333 467888888888883 4433 11 114788999999988
Q ss_pred CCCCCC-cccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccc-cccccCCCCCCCccEEeecc
Q 038480 724 KKLKEV-TWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNL-EKIYWNALSFPDLLELFVSE 801 (850)
Q Consensus 724 ~~l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~i~~~~~~~~~L~~L~i~~ 801 (850)
. +..+ +.+..+++|++|++++| .++.++. .+..+++|+.|++++++-. ..++.....+++|+.+.+.+
T Consensus 202 ~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 202 K-LAFMGPEFQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp C-CCEECGGGGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred c-CCcchhhhcccCcccEEECcCC-cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 4 4444 35778889999999885 5667764 5677888999999887644 23444455678888888887
Q ss_pred CCCCCCCCCC
Q 038480 802 CPKLKKLPLD 811 (850)
Q Consensus 802 C~~L~~Lp~~ 811 (850)
|+.++..+..
T Consensus 272 ~~~l~~~~~~ 281 (317)
T 3o53_A 272 VKKLTGQNEE 281 (317)
T ss_dssp HHHHHSSSSC
T ss_pred chhccCCchh
Confidence 7777765443
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=185.09 Aligned_cols=205 Identities=23% Similarity=0.312 Sum_probs=158.4
Q ss_pred EEcCCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc
Q 038480 469 VSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 546 (850)
...+..+...|. .-.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++| .++.
T Consensus 37 ~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 114 (353)
T 2z80_A 37 KGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSN 114 (353)
T ss_dssp ECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSS
T ss_pred eCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCc
Confidence 334445555554 233589999999999998865 789999999999999999988888999999999999999 8888
Q ss_pred cChh-hccccCCCeEeecccccccccc--hhhcCCccceeecc----------cccccCCCccEEeccCCCCCCCCCCCc
Q 038480 547 LPSE-ISKLVSLQYLNLSETSIKELPN--ELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTADPVPED 613 (850)
Q Consensus 547 lp~~-i~~l~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~~~~~~~ 613 (850)
+|.. ++.+++|++|++++|+++.+|. .+..+++|++|+++ ..++.+++|++|++.+|.+.+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------ 188 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------ 188 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE------
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc------
Confidence 8876 8899999999999999999987 78999999999987 346788999999999998543
Q ss_pred ccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCcccccc---ccCcCCcCeeeec
Q 038480 614 SVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISY---LADLKHLDKLDFA 690 (850)
Q Consensus 614 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~l~ 690 (850)
..+..+.++++|+.|+++.|....+.... ...+++|+.|++++|. +...+... ....+.++.+++.
T Consensus 189 --------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 189 --------YEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp --------ECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEE
T ss_pred --------cCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCc-cccccccccccccccchhhccccc
Confidence 23456788999999999999876655422 1224689999999986 33322111 1233445555555
Q ss_pred cC
Q 038480 691 YC 692 (850)
Q Consensus 691 ~~ 692 (850)
++
T Consensus 258 ~~ 259 (353)
T 2z80_A 258 NV 259 (353)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.5e-17 Score=189.67 Aligned_cols=250 Identities=18% Similarity=0.172 Sum_probs=185.3
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
+++.|++++|.++.+|.... ++|++|++++|.++.++. .+++|++|+|++| .++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 58899999999998876433 899999999999998876 5799999999999 8999997 7899999999999
Q ss_pred ccccccchhhcCCccceeecc-----cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEe
Q 038480 566 SIKELPNELKALTNLKCWNLE-----QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSL 640 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~-----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 640 (850)
+++.+|. .+++|+.|+++ .....+++|++|++.+|.+++.+ ..+.+|+.|+++.
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~------------------~~~~~L~~L~L~~ 170 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP------------------ALPSELCKLWAYN 170 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCS
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC------------------CccCCCCEEECCC
Confidence 9999988 67889999887 22344589999999999866421 1245677788877
Q ss_pred CchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEec
Q 038480 641 RSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTI 720 (850)
Q Consensus 641 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L 720 (850)
|.+..++ ..+++|+.|++++|. ++.++. .+++|+.|++++| .+..+ + ..+++|+.|++
T Consensus 171 N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N-~l~~l-------~---~~~~~L~~L~L 228 (622)
T 3g06_A 171 NQLTSLP------MLPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNN-RLTSL-------P---ALPSGLKELIV 228 (622)
T ss_dssp SCCSCCC------CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSSC-------C---CCCTTCCEEEC
T ss_pred CCCCCCc------ccCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCC-ccccc-------C---CCCCCCCEEEc
Confidence 7766543 234678888888776 343331 2467888888877 34433 1 13577888888
Q ss_pred ccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeec
Q 038480 721 DCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVS 800 (850)
Q Consensus 721 ~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~ 800 (850)
++| .++.+| ..+++|++|+|++| .++.++. .+++|+.|+|++| .++.++.....+++|+.|+++
T Consensus 229 s~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 229 SGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred cCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 877 455565 55677888888775 4555532 4677888888875 566777666777888888887
Q ss_pred cCC
Q 038480 801 ECP 803 (850)
Q Consensus 801 ~C~ 803 (850)
+|+
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=6.6e-19 Score=187.77 Aligned_cols=238 Identities=17% Similarity=0.155 Sum_probs=182.2
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeecccccccccchhhcCCccceeecc
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
.++.++++.+.+...+...+..+++|++|+|++| .+..++ ..++.+++|++|++++|.+..++. +
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~------------ 76 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-L------------ 76 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h------------
Confidence 4566677777777777777888899999999999 777665 678999999999999999887653 3
Q ss_pred cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeee
Q 038480 587 QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRE 666 (850)
Q Consensus 587 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 666 (850)
..+++|++|++.+|.+.+ +...++|+.|+++.|.+..+.. ..+++|+.|++++
T Consensus 77 ---~~l~~L~~L~Ls~n~l~~-------------------l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~ 129 (317)
T 3o53_A 77 ---ESLSTLRTLDLNNNYVQE-------------------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLAN 129 (317)
T ss_dssp ---TTCTTCCEEECCSSEEEE-------------------EEECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCS
T ss_pred ---hhcCCCCEEECcCCcccc-------------------ccCCCCcCEEECCCCccCCcCc-----cccCCCCEEECCC
Confidence 455666777777776432 3345889999999888766542 1246899999999
Q ss_pred cCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeecc
Q 038480 667 CKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERC 746 (850)
Q Consensus 667 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c 746 (850)
|. +..++...+..+++|+.|++++|. +..+....+ ...+++|++|++++| .+..++....+++|++|++++|
T Consensus 130 N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 130 NK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL-----AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp SC-CCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGG-----GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS
T ss_pred CC-CCCccchhhhccCCCCEEECCCCC-CCcccHHHH-----hhccCcCCEEECCCC-cCcccccccccccCCEEECCCC
Confidence 87 444443567789999999999984 443311111 124789999999999 4666666667999999999995
Q ss_pred cccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCCC
Q 038480 747 YEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPK 804 (850)
Q Consensus 747 ~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~ 804 (850)
.++.++. .+..+++|+.|+++++ .++.++.....+++|+.|++++++-
T Consensus 202 -~l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 202 -KLAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -CCCEECG--------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred -cCCcchh--------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 5677765 5678999999999996 6778887788899999999998853
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=8.6e-18 Score=178.39 Aligned_cols=232 Identities=20% Similarity=0.235 Sum_probs=145.9
Q ss_pred EEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc---ChhhccccCCCeEeeccc
Q 038480 489 RISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL---PSEISKLVSLQYLNLSET 565 (850)
Q Consensus 489 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~l~~L~~L~Ls~~ 565 (850)
.++..++.++.+|.. -.++|++|++++|.++.++..+|..+++|++|+|++| .+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 566666777776652 2368888888888888888877888888888888888 66544 566777888888888888
Q ss_pred ccccccchhhcCCccceeecc----------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCE
Q 038480 566 SIKELPNELKALTNLKCWNLE----------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDV 635 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~----------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 635 (850)
.+..+|..+..+++|++|+++ ..+..+++|++|++.+|.+.. .....+.+++
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~l~---- 150 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------AFNGIFNGLS---- 150 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE--------------CSTTTTTTCT----
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc--------------cchhhcccCc----
Confidence 888888777666666666654 123444555555555554321 0111233334
Q ss_pred EEEEeCchhhhhhhhcCCCccccceEEEeeecCCCC-ccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCC
Q 038480 636 LTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSK-SLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDS 714 (850)
Q Consensus 636 L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~ 714 (850)
+|+.|++++|.... ..+ ..+..+++|+.|++++| .+..+ .+.....+++
T Consensus 151 ----------------------~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~------~~~~~~~l~~ 200 (306)
T 2z66_A 151 ----------------------SLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQL------SPTAFNSLSS 200 (306)
T ss_dssp ----------------------TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEE------CTTTTTTCTT
T ss_pred ----------------------CCCEEECCCCccccccch-hHHhhCcCCCEEECCCC-CcCCc------CHHHhcCCCC
Confidence 45555555543221 122 34566777888888777 33333 1223345678
Q ss_pred ccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCC-CccEeeccccc
Q 038480 715 LQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFA-KLQCLRLQDLS 779 (850)
Q Consensus 715 L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 779 (850)
|+.|++++|. +..++ .+..+++|++|++++|......+. .+..+| +|+.|+|++++
T Consensus 201 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSS--------SCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHH--------HHHhhhccCCEEEccCCC
Confidence 8888888774 44443 366778888888887643333322 455564 78888888754
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=186.13 Aligned_cols=222 Identities=19% Similarity=0.236 Sum_probs=109.2
Q ss_pred cceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEe
Q 038480 485 RDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLN 561 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~ 561 (850)
++++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 34555555555554442 2345555555555555555555444555555555555555 4444443 345555555555
Q ss_pred ecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeC
Q 038480 562 LSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLR 641 (850)
Q Consensus 562 Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 641 (850)
+++|.+..+|. ..+..+++|++|++.+|+... ......+.++++|+.|+++.|
T Consensus 143 L~~N~i~~~~~--------------~~~~~l~~L~~L~l~~~~~l~-------------~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 143 LRNNPIESIPS--------------YAFNRIPSLRRLDLGELKRLS-------------YISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CCSCCCCEECT--------------TTTTTCTTCCEEECCCCTTCC-------------EECTTTTTTCSSCCEEECTTS
T ss_pred CCCCcccccCH--------------HHhhhCcccCEeCCCCCCCcc-------------eeCcchhhcccccCeecCCCC
Confidence 55555554443 123344455555555433211 111123445555555555555
Q ss_pred chhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecc
Q 038480 642 SFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTID 721 (850)
Q Consensus 642 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~ 721 (850)
.+..++. ...+++|+.|++++|. +..++...+..+++|+.|++++| .+..+ .+..+..+++|+.|+|+
T Consensus 196 ~l~~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 196 NLREIPN----LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVI------ERNAFDNLQSLVEINLA 263 (440)
T ss_dssp CCSSCCC----CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEE------CTTSSTTCTTCCEEECT
T ss_pred cCccccc----cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEE------ChhhhcCCCCCCEEECC
Confidence 4443322 1223456666666654 33333244556666666666666 33322 01222345666666666
Q ss_pred cCCCCCCCcc--cccCCCCceEEeeccc
Q 038480 722 CCKKLKEVTW--LAFAPNLKFVHIERCY 747 (850)
Q Consensus 722 ~~~~l~~l~~--l~~l~~L~~L~L~~c~ 747 (850)
+| .+..++. +..+++|+.|+|++|+
T Consensus 264 ~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 264 HN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CC-CCCccChhHhccccCCCEEEcCCCC
Confidence 66 3444432 4556666666666543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=6.1e-17 Score=181.76 Aligned_cols=241 Identities=18% Similarity=0.214 Sum_probs=144.4
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeeccc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSET 565 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~ 565 (850)
.+.++..++.+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++| .+..++ ..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 34566666666666542 2367888888888887777777888888888888888 665554 56777888888888888
Q ss_pred ccccccch-hhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCc-h
Q 038480 566 SIKELPNE-LKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRS-F 643 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~-~ 643 (850)
.++.+|.. +. .+++|++|++.+|.+... ....+.++++|+.|+++.++ .
T Consensus 134 ~l~~~~~~~~~---------------~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 134 WLTVIPSGAFE---------------YLSKLRELWLRNNPIESI--------------PSYAFNRVPSLMRLDLGELKKL 184 (452)
T ss_dssp CCSBCCTTTSS---------------SCTTCCEEECCSCCCCEE--------------CTTTTTTCTTCCEEECCCCTTC
T ss_pred cCCccChhhhc---------------ccCCCCEEECCCCCccee--------------CHhHHhcCCcccEEeCCCCCCc
Confidence 87777653 33 344445555555543221 11234455555555555321 1
Q ss_pred hhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccC
Q 038480 644 CALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCC 723 (850)
Q Consensus 644 ~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 723 (850)
..+.. .....+++|+.|++++|. +..++ .+..+++|+.|++++|. +..+. +..+..+++|+.|++++|
T Consensus 185 ~~i~~--~~~~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 185 EYISE--GAFEGLFNLKYLNLGMCN-IKDMP--NLTPLVGLEELEMSGNH-FPEIR------PGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CEECT--TTTTTCTTCCEEECTTSC-CSSCC--CCTTCTTCCEEECTTSC-CSEEC------GGGGTTCTTCCEEECTTS
T ss_pred cccCh--hhccCCCCCCEEECCCCc-ccccc--cccccccccEEECcCCc-CcccC------cccccCccCCCEEEeCCC
Confidence 11111 112234567777777765 33333 36667778888887773 33331 122335677888888777
Q ss_pred CCCCCC-c-ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 724 KKLKEV-T-WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 724 ~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
. +..+ + .+..+++|++|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 253 ~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 Q-VSLIERNAFDGLASLVELNLAHN-NLSSLPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred c-CceECHHHhcCCCCCCEEECCCC-cCCccCh-------HHhccccCCCEEEccCCC
Confidence 4 3333 2 3667777888888775 4555544 245667777788777654
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=7.9e-17 Score=180.04 Aligned_cols=281 Identities=20% Similarity=0.195 Sum_probs=133.5
Q ss_pred cceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecc
Q 038480 485 RDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSE 564 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~ 564 (850)
++++.|++++|.+..+|.+..+++|++|++++|.+++++.. ..+|++|++++| .+..+| .++.+++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 46666666666666666666666666666666666655432 246666666666 555565 466666666666666
Q ss_pred cccccccchhhcCCccceeecc-------cccccCCCccEEeccCCCCCCCCCCC--cccccCCccccHHHh-ccCCCCC
Q 038480 565 TSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGFTADPVPE--DSVLFGGSEILVEEL-INLKHLD 634 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~~~~L-~~L~~L~ 634 (850)
|.++.+|... .+|++|+++ ..++.+++|++|++.+|.+.+.+... .....- ....+..+ ..+++|+
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l-~~N~l~~l~~~~~~L~ 280 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV-RDNYLTDLPELPQSLT 280 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEEC-CSSCCSCCCCCCTTCC
T ss_pred CcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEEC-CCCcccccCcccCcCC
Confidence 6666555432 355555554 23445556666666665544321000 000000 00000000 0124566
Q ss_pred EEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCc-CCcCeeeeccCCCCcccccccccCCCCCCCCC
Q 038480 635 VLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADL-KHLDKLDFAYCSNLEEFNYVELRTAREPYGFD 713 (850)
Q Consensus 635 ~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~ 713 (850)
.|+++.|.+..++.+ .++|+.|++++|. +..+ ..+ ++|+.|++++|. +..+ + ..++
T Consensus 281 ~L~ls~N~l~~l~~~------~~~L~~L~l~~N~-l~~i-----~~~~~~L~~L~Ls~N~-l~~l-------p---~~~~ 337 (454)
T 1jl5_A 281 FLDVSENIFSGLSEL------PPNLYYLNASSNE-IRSL-----CDLPPSLEELNVSNNK-LIEL-------P---ALPP 337 (454)
T ss_dssp EEECCSSCCSEESCC------CTTCCEEECCSSC-CSEE-----CCCCTTCCEEECCSSC-CSCC-------C---CCCT
T ss_pred EEECcCCccCcccCc------CCcCCEEECcCCc-CCcc-----cCCcCcCCEEECCCCc-cccc-------c---ccCC
Confidence 666666655443221 2466777776664 2222 223 478888888873 4433 1 1368
Q ss_pred CccEEecccCCCCCCCcccccCCCCceEEeecccccc--eeccccccCCCCCCCcC-------------CCccEeecccc
Q 038480 714 SLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMD--EIISVWKLGEVPGLNPF-------------AKLQCLRLQDL 778 (850)
Q Consensus 714 ~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~--~i~~~~~~~~~~~~~~~-------------~~L~~L~L~~~ 778 (850)
+|+.|++++| .+..+|. .+++|++|++++|.... .+|. .+..+ ++|+.|+++++
T Consensus 338 ~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~--------~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 338 RLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLREFPDIPE--------SVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp TCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCCCCT--------TCCEEECCC--------------------
T ss_pred cCCEEECCCC-ccccccc--hhhhccEEECCCCCCCcCCCChH--------HHHhhhhcccccccccccCcCCEEECCCC
Confidence 9999999999 5667776 58999999999875444 3433 22333 78999999986
Q ss_pred ccccccccCCCCCCCccEEeeccCCCCCCCCCCCc
Q 038480 779 SNLEKIYWNALSFPDLLELFVSECPKLKKLPLDIN 813 (850)
Q Consensus 779 ~~l~~i~~~~~~~~~L~~L~i~~C~~L~~Lp~~~~ 813 (850)
+ +..++.- -++|+.|.+.+|.--..+|....
T Consensus 407 ~-l~~~~~i---P~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 407 P-LREFPDI---PESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -----------------------------------
T ss_pred c-CCccccc---hhhHhheeCcCcccCCccccCHH
Confidence 4 4433211 14577777877754444444443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.8e-17 Score=182.63 Aligned_cols=233 Identities=19% Similarity=0.200 Sum_probs=151.9
Q ss_pred CCccccCcccccccceEEEeecccccccc--cCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVAL--SETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
+.++...|. .-.++++.|++++|.+..+ ..+.++++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCT
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccCh
Confidence 344444443 2236899999999999887 34689999999999999999999888999999999999999 7888776
Q ss_pred h-hccccCCCeEeecccccccccc-hhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHh
Q 038480 550 E-ISKLVSLQYLNLSETSIKELPN-ELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEEL 627 (850)
Q Consensus 550 ~-i~~l~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 627 (850)
. ++.+++|++|++++|.+..+|. .+.++++|+.|+++ +|+... ......+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~---------------~~~~l~-------------~i~~~~~ 192 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG---------------ELKKLE-------------YISEGAF 192 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC---------------CCTTCC-------------EECTTTT
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC---------------CCCCcc-------------ccChhhc
Confidence 4 7889999999999999998875 46667777766664 221110 0011123
Q ss_pred ccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCC
Q 038480 628 INLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAR 707 (850)
Q Consensus 628 ~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 707 (850)
.++++|+.|+++.|.+..++. ...+++|+.|++++|. +..+....+..+++|+.|++++|. +..+ .+.
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~------~~~ 260 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLI------ERN 260 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCC----CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEE------CTT
T ss_pred cCCCCCCEEECCCCccccccc----ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceE------CHH
Confidence 344444444444444433321 1223456666666655 333322456666777777777663 3322 122
Q ss_pred CCCCCCCccEEecccCCCCCCCcc--cccCCCCceEEeeccc
Q 038480 708 EPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIERCY 747 (850)
Q Consensus 708 ~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~~c~ 747 (850)
.+..+++|+.|+|++| .+..++. +..+++|+.|+|++|+
T Consensus 261 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 2335667777777777 3444442 5566777777777654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=178.66 Aligned_cols=243 Identities=17% Similarity=0.246 Sum_probs=167.1
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeecc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSE 564 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~ 564 (850)
..+.++..++.+..+|.. -.++++.|++++|.++.+++..|.++++|++|+|++| .+..++ ..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 345677777788877653 2378999999999998888888999999999999999 777665 6788899999999999
Q ss_pred cccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCc-h
Q 038480 565 TSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRS-F 643 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~-~ 643 (850)
|+++.+|.. .+..+++|++|++.+|.+... ....+.++++|+.|+++.+. .
T Consensus 122 n~l~~~~~~--------------~~~~l~~L~~L~L~~N~i~~~--------------~~~~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 122 NRLTTIPNG--------------AFVYLSKLKELWLRNNPIESI--------------PSYAFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp SCCSSCCTT--------------TSCSCSSCCEEECCSCCCCEE--------------CTTTTTTCTTCCEEECCCCTTC
T ss_pred CcCCeeCHh--------------HhhccccCceeeCCCCccccc--------------CHHHhhhCcccCEeCCCCCCCc
Confidence 999888753 234556667777777765431 22346678888888887633 2
Q ss_pred hhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccC
Q 038480 644 CALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCC 723 (850)
Q Consensus 644 ~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 723 (850)
..+.. .....+++|+.|++++|. ++.++ .+..+++|+.|++++| .+..+ .+..+..+++|+.|++++|
T Consensus 174 ~~i~~--~~~~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~L~Ls~N-~l~~~------~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 174 SYISE--GAFEGLSNLRYLNLAMCN-LREIP--NLTPLIKLDELDLSGN-HLSAI------RPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CEECT--TTTTTCSSCCEEECTTSC-CSSCC--CCTTCSSCCEEECTTS-CCCEE------CTTTTTTCTTCCEEECTTC
T ss_pred ceeCc--chhhcccccCeecCCCCc-Ccccc--ccCCCcccCEEECCCC-ccCcc------ChhhhccCccCCEEECCCC
Confidence 22211 122335678888888775 44443 3667778888888887 34433 1233446778888888877
Q ss_pred CCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 724 KKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 724 ~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
. +..++ .+..+++|++|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 242 ~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 Q-IQVIERNAFDNLQSLVEINLAHN-NLTLLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCEECTTSSTTCTTCCEEECTTS-CCCCCCT-------TTTSSCTTCCEEECCSSC
T ss_pred c-eeEEChhhhcCCCCCCEEECCCC-CCCccCh-------hHhccccCCCEEEcCCCC
Confidence 4 43333 3667788888888774 4555544 245667888888887754
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=4.3e-17 Score=172.98 Aligned_cols=227 Identities=22% Similarity=0.256 Sum_probs=154.7
Q ss_pred CCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCc--hhhhcCCCcceEEEccCCCCCccc
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTIT--SNFFDFMPSLRVLNLSKNLSLKQL 547 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~i~~l 547 (850)
+.++...|. .-.+++++|++++|.+..++. +..+++|++|++++|.++... +..+..+++|++|++++| .+..+
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l 93 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITM 93 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccC
Confidence 334444443 233689999999999998865 579999999999999987552 334667999999999999 88899
Q ss_pred ChhhccccCCCeEeecccccccccc--hhhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccc
Q 038480 548 PSEISKLVSLQYLNLSETSIKELPN--ELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVL 616 (850)
Q Consensus 548 p~~i~~l~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (850)
|..+..+++|++|++++|.++.+|. .+..+++|++|+++ ..+..+++|++|++.+|.+..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------- 164 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------- 164 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG---------
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc---------
Confidence 9999999999999999999998874 78999999999998 346788999999999987432
Q ss_pred cCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCc
Q 038480 617 FGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLE 696 (850)
Q Consensus 617 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 696 (850)
...+..+..+++|+.|+++.|.+.. .+...+..+++|+.|++++|. +.
T Consensus 165 ----~~~~~~~~~l~~L~~L~Ls~n~l~~---------------------------~~~~~~~~l~~L~~L~L~~N~-l~ 212 (306)
T 2z66_A 165 ----NFLPDIFTELRNLTFLDLSQCQLEQ---------------------------LSPTAFNSLSSLQVLNMSHNN-FF 212 (306)
T ss_dssp ----GEECSCCTTCTTCCEEECTTSCCCE---------------------------ECTTTTTTCTTCCEEECTTSC-CS
T ss_pred ----ccchhHHhhCcCCCEEECCCCCcCC---------------------------cCHHHhcCCCCCCEEECCCCc-cC
Confidence 0122334555666666555444332 221334455566666666652 22
Q ss_pred ccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCC-CCceEEeeccc
Q 038480 697 EFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAP-NLKFVHIERCY 747 (850)
Q Consensus 697 ~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~-~L~~L~L~~c~ 747 (850)
.++ ......+++|+.|++++|......+ .+..++ +|++|+|++|+
T Consensus 213 ~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 213 SLD------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCC------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccC------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 220 0011245666666666664322222 244453 66666666643
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=4.1e-17 Score=171.17 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=129.9
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~ 566 (850)
+.++..++.+..+|. ...++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 455566666666653 23457777777777777777666777777777777777 55554 5667777777777777775
Q ss_pred -cccc-cchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchh
Q 038480 567 -IKEL-PNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFC 644 (850)
Q Consensus 567 -i~~L-P~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 644 (850)
+..+ |..+..+++| ++|++.+|.+... ....+.++++|+.|+++.|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L---------------~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRL---------------HTLHLDRCGLQEL--------------GPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TCCCCCTTTTTTCTTC---------------CEEECTTSCCCCC--------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCC---------------CEEECCCCcCCEE--------------CHhHhhCCcCCCEEECCCCccc
Confidence 6665 3444444444 3344444443221 1122344555555555554443
Q ss_pred hhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCC
Q 038480 645 ALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCK 724 (850)
Q Consensus 645 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 724 (850)
.+.. .....+++|+.|++++|. ++.++...+..+++|+.|++++|. +..+ .+..+..+++|+.|++++|.
T Consensus 143 ~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~------~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 143 ALPD--DTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR-VAHV------HPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCCT--TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEE------CTTTTTTCTTCCEEECCSSC
T ss_pred ccCH--hHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc-cccc------CHhHccCcccccEeeCCCCc
Confidence 3221 111223466666666664 444443446677888888888874 3322 12334467888888888884
Q ss_pred CCCCCcc--cccCCCCceEEeecccc
Q 038480 725 KLKEVTW--LAFAPNLKFVHIERCYE 748 (850)
Q Consensus 725 ~l~~l~~--l~~l~~L~~L~L~~c~~ 748 (850)
+..++. +..+++|++|++++|+.
T Consensus 213 -l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 213 -LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred -CCcCCHHHcccCcccCEEeccCCCc
Confidence 444542 67788888888888653
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.5e-17 Score=184.71 Aligned_cols=238 Identities=15% Similarity=0.111 Sum_probs=160.4
Q ss_pred CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCcccee
Q 038480 504 PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCW 583 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L 583 (850)
..+++|++|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|++++|.++.+|..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---------- 98 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG---------- 98 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----------
Confidence 45668999999999998888878899999999999999 6766554 88899999999999988877632
Q ss_pred ecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEE
Q 038480 584 NLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQ 663 (850)
Q Consensus 584 ~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~ 663 (850)
++|++|++.+|.+.+.+ ...+++|+.|+++.|.+..+.. .....+++|+.|+
T Consensus 99 ---------~~L~~L~L~~N~l~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~ 150 (487)
T 3oja_A 99 ---------PSIETLHAANNNISRVS-----------------CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLD 150 (487)
T ss_dssp ---------TTCCEEECCSSCCCCEE-----------------ECCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEE
T ss_pred ---------CCcCEEECcCCcCCCCC-----------------ccccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEE
Confidence 44555555555543210 0124556666666666554322 1223346778888
Q ss_pred eeecCCCCcccccccc-CcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEE
Q 038480 664 LRECKDSKSLNISYLA-DLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVH 742 (850)
Q Consensus 664 l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~ 742 (850)
+++|......+ ..+. .+++|+.|++++|. +..+ + ....+++|+.|+|++|.....++.+..+++|+.|+
T Consensus 151 Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~-l~~~-------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 151 LKLNEIDTVNF-AELAASSDTLEHLNLQYNF-IYDV-------K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp CTTSCCCEEEG-GGGGGGTTTCCEEECTTSC-CCEE-------E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred CCCCCCCCcCh-HHHhhhCCcccEEecCCCc-cccc-------c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 87776333233 3343 67888899988884 4433 1 11247889999999885333334577888999999
Q ss_pred eecccccceeccccccCCCCCCCcCCCccEeeccccccc-cccccCCCCCCCccEEeec
Q 038480 743 IERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNL-EKIYWNALSFPDLLELFVS 800 (850)
Q Consensus 743 L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~i~~~~~~~~~L~~L~i~ 800 (850)
|++| .+..+|. .+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 221 Ls~N-~l~~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 221 LRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTS-CCCEECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCC-cCcccch--------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9885 4566665 5677888999999887644 2333334556777777665
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=4.5e-18 Score=180.86 Aligned_cols=246 Identities=19% Similarity=0.122 Sum_probs=146.0
Q ss_pred cceEEEeecccccccccC-CCCCCccceeecccccCCC--Cchhhhc-------CCCcceEEEccCCCCCc-ccChhh--
Q 038480 485 RDRRRISLLRNKIVALSE-TPTCPHLVTLFLAINKLDT--ITSNFFD-------FMPSLRVLNLSKNLSLK-QLPSEI-- 551 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~~-~~~~~~L~~L~l~~n~l~~--~~~~~~~-------~l~~L~~L~Ls~~~~i~-~lp~~i-- 551 (850)
++++.|++.+|.+ .+|. +.. .|++|++++|.+.. ++.. +. ++++|++|+|++| .+. .+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHH
Confidence 4556666666666 4432 121 27777777777643 2222 22 5777888888887 444 567665
Q ss_pred ccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCC
Q 038480 552 SKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLK 631 (850)
Q Consensus 552 ~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 631 (850)
+.+++|++|++++|.++.+|..++.+.. ..+++|++|++.+|.+... ....+..++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~----------~~~~~L~~L~L~~N~l~~~--------------~~~~~~~l~ 173 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQ----------WLKPGLKVLSIAQAHSLNF--------------SCEQVRVFP 173 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHT----------TCCTTCCEEEEESCSCCCC--------------CTTTCCCCS
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHH----------hhcCCCcEEEeeCCCCccc--------------hHHHhccCC
Confidence 7778888888888877777766665521 1125566666666664431 123455667
Q ss_pred CCCEEEEEeCchhhhhhhhc--CCCccccceEEEeeecCCCCc---cccccccCcCCcCeeeeccCCCCcccccccccCC
Q 038480 632 HLDVLTVSLRSFCALQKLWS--SPKLQSSTKSLQLRECKDSKS---LNISYLADLKHLDKLDFAYCSNLEEFNYVELRTA 706 (850)
Q Consensus 632 ~L~~L~l~~~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 706 (850)
+|+.|+++.|.......++. ....+++|+.|++++|. ++. ++...+..+++|+.|++++|. +..... .
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~ 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAG-----A 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC-----C
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc-----h
Confidence 77777777666433211111 11334677777777775 332 221223456788888888873 332200 1
Q ss_pred CCCCCCCCccEEecccCCCCCCCcc-cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccc
Q 038480 707 REPYGFDSLQRVTIDCCKKLKEVTW-LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLS 779 (850)
Q Consensus 707 ~~~~~l~~L~~L~L~~~~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~ 779 (850)
.....+++|++|++++|. ++.+|. +. ++|++|++++| .++.++ .+..+++|+.|++++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p---------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNP---------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCC---------CTTTSCEEEEEECTTCT
T ss_pred hhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCCh---------hHhhCCCCCEEeccCCC
Confidence 122246788888888884 455653 33 78888888875 455552 35678888888888753
No 68
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=2.1e-15 Score=163.28 Aligned_cols=290 Identities=15% Similarity=0.075 Sum_probs=178.6
Q ss_pred CCcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC------CHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM------QLERIQEK 202 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 202 (850)
++.|+||+++++++.+++..+ +++.|+|++|+|||||+++++++. . ++|+.+.... +...+++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 356899999999999998764 799999999999999999999874 1 6788776543 56666776
Q ss_pred HHHHhcC-----------------C---CCCCHHHHHHHHHHHhcc-CcEEEEEcccCCccc--------cccccccCCC
Q 038480 203 IGERIGS-----------------F---GNKSLEEKASDIFKILSK-KKFLLLLDDVWERID--------LVKVGVPFPT 253 (850)
Q Consensus 203 i~~~l~~-----------------~---~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~--------~~~~~~~l~~ 253 (850)
+.+.+.. . ...+..+....+.+..+. ++.+||+||++.... +......+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 6665431 0 013445556666665543 499999999976432 1111111111
Q ss_pred CCCCeEEEEecCchhHhhhc-----------cC-cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC
Q 038480 254 SENASKVVFTTRLVDVCSLM-----------GA-QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG 321 (850)
Q Consensus 254 ~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 321 (850)
...+.++|+|++.......+ +. ...+++.+|+.+|+.+++...+...... -..+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCC
Confidence 12467899998876532211 11 2478999999999999998765332211 124568899999999
Q ss_pred CchHHHHHHhhhcCCCCHHHHHH-HHHHHhhccCCCCCCchhhHhHH-HHhhcCCChHHHHHHHhHhcCCCCCcccCHHH
Q 038480 322 LPLALITIGRAMGSKNTPEEWRY-AIEMLRRSASEFPGMGKEVYPLL-KFSYDSLSSDVLRSCLLYCSLFPEDYQISKIE 399 (850)
Q Consensus 322 ~Plai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~ 399 (850)
+|+++..++..+....+...+.. ..+.... .+...+ .+.+ + ++ ..+..+..+|. . ..+...
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~l~~-~-~~-~~~~~l~~la~-g---~~~~~~ 300 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG----------LIMGELEELRR-R-SP-RYVDILRAIAL-G---YNRWSL 300 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHH-H-CH-HHHHHHHHHHT-T---CCSHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHH----------HHHHHHHHHHh-C-Ch-hHHHHHHHHHh-C---CCCHHH
Confidence 99999998875432122222211 1111100 011111 1122 2 56 78899988887 2 134445
Q ss_pred HHHHHHHcCCCCCCCCccchhhHHHHHHHHHHhhhccccCcceEEEhhhHHHHHH
Q 038480 400 LIECWIGEGFLNGFEGMGVYNQGYYVIGVLVQACLLEEVGTNFVKMHDVIRDMSL 454 (850)
Q Consensus 400 li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~mHdlv~~~~~ 454 (850)
+....-.. . + .........+++.|.+.+++...+..+...|.+++++.+
T Consensus 301 l~~~~~~~-~----~-~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVK-G----T-KIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHT-T----C-CCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHH-h----C-CCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 44432111 0 0 012345678899999999998754333334677777643
No 69
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=9.7e-15 Score=158.51 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=172.5
Q ss_pred CCcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-----CCHHHHHHHH
Q 038480 129 EPTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-----MQLERIQEKI 203 (850)
Q Consensus 129 ~~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 203 (850)
+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++.+.. . . ..+|+.+... .+...++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 3568999999999999 765 699999999999999999999886 2 2 2578887643 3445555555
Q ss_pred HHHhc--------------C------C-----------CCCCHHHHHHHHHHHhccCcEEEEEcccCCcc-----ccccc
Q 038480 204 GERIG--------------S------F-----------GNKSLEEKASDIFKILSKKKFLLLLDDVWERI-----DLVKV 247 (850)
Q Consensus 204 ~~~l~--------------~------~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~ 247 (850)
.+.+. . . ......+....+.+.-+ ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44331 0 0 01233444444443322 49999999996532 22222
Q ss_pred cccCCCCCCCeEEEEecCchhHhhh----------c-cC-cceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHH
Q 038480 248 GVPFPTSENASKVVFTTRLVDVCSL----------M-GA-QKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAM 315 (850)
Q Consensus 248 ~~~l~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i 315 (850)
...+.....+.++|+|++....... + +. ...+.+.+|+.+|+.+++...+....... .. ...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHH
Confidence 1111111246789999997654221 1 11 25789999999999999987653211111 11 2889
Q ss_pred HHHcCCCchHHHHHHhhhcCCCCHHHHHHH-HHHHhhccCCCCCCchhhHhHHH-Hhhc--CCChHHHHHHHhHhcCCCC
Q 038480 316 AKECAGLPLALITIGRAMGSKNTPEEWRYA-IEMLRRSASEFPGMGKEVYPLLK-FSYD--SLSSDVLRSCLLYCSLFPE 391 (850)
Q Consensus 316 ~~~~~G~Plai~~~~~~l~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cf~~~s~fp~ 391 (850)
++.|+|+|+++..++..+....+...|... .+... ..+...+. +.+. .+++ ..+..+..+|.-
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g-- 302 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIARK-RYLNIMRTLSKC-- 302 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTTC--
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccccH-HHHHHHHHHHcC--
Confidence 999999999999998876432333333221 11110 01111122 1111 5777 789999999882
Q ss_pred CcccCHHHHHHHHH-HcCCCCCCCCccchhhHHHHHHHHHHhhhccccCcceEE-EhhhHHHH
Q 038480 392 DYQISKIELIECWI-GEGFLNGFEGMGVYNQGYYVIGVLVQACLLEEVGTNFVK-MHDVIRDM 452 (850)
Q Consensus 392 ~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mHdlv~~~ 452 (850)
. +...+....- ..|. .........+++.|.+.+++...+ ..|+ -|++++++
T Consensus 303 -~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 -G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp -B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred -C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 1 3444432110 1121 011245678899999999998754 3455 57788875
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1.3e-15 Score=159.76 Aligned_cols=215 Identities=22% Similarity=0.240 Sum_probs=151.6
Q ss_pred CCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-C
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-P 548 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p 548 (850)
+.++...|. ...+++++|++++|.+..++ .+..+++|++|++++|.++.+.+..|..+++|++|++++|..++.+ |
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 344444443 33568999999999999885 3688999999999999999988888999999999999999547777 6
Q ss_pred hhhccccCCCeEeeccccccccc-chhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHh
Q 038480 549 SEISKLVSLQYLNLSETSIKELP-NELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEEL 627 (850)
Q Consensus 549 ~~i~~l~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 627 (850)
..+..+++|++|++++|.+..++ ..+..+++ |++|++.+|.+... ....+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------L~~L~l~~n~l~~~--------------~~~~~ 149 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA---------------LQYLYLQDNALQAL--------------PDDTF 149 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---------------CCEEECCSSCCCCC--------------CTTTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcC---------------CCEEECCCCccccc--------------CHhHh
Confidence 78899999999999999998774 44555554 45555555554321 11234
Q ss_pred ccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCC
Q 038480 628 INLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAR 707 (850)
Q Consensus 628 ~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 707 (850)
..+++|+.|+++.|.+..+.. .....+++|+.|++++|. +.......+..+++|+.|++++| .+..++. .
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------~ 219 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPT------E 219 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCH------H
T ss_pred ccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCH------H
Confidence 566677777777666554332 112234677888888776 34443356778889999999988 4443311 1
Q ss_pred CCCCCCCccEEecccCCCC
Q 038480 708 EPYGFDSLQRVTIDCCKKL 726 (850)
Q Consensus 708 ~~~~l~~L~~L~L~~~~~l 726 (850)
....+++|+.|++++|+..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHTTCTTCCEEECCSSCEE
T ss_pred HcccCcccCEEeccCCCcc
Confidence 1235789999999988643
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=9.3e-16 Score=162.40 Aligned_cols=193 Identities=21% Similarity=0.252 Sum_probs=141.1
Q ss_pred ccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCe
Q 038480 480 EVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQY 559 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~ 559 (850)
....++++++|++.+|.+..++.+..+++|++|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 345678999999999999988888899999999999999988877 889999999999999 788876 6889999999
Q ss_pred EeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEE
Q 038480 560 LNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVS 639 (850)
Q Consensus 560 L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 639 (850)
|++++|.++.+|. +..+ ++|++|++.+|.+.. +..+..+++|+.|+++
T Consensus 112 L~l~~n~l~~~~~-l~~l---------------~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGL---------------SNLQVLYLDLNQITN----------------ISPLAGLTNLQYLSIG 159 (308)
T ss_dssp EECTTSCCCCCGG-GTTC---------------TTCCEEECCSSCCCC----------------CGGGGGCTTCCEEECC
T ss_pred EECCCCCCCCchh-hcCC---------------CCCCEEECCCCccCc----------------CccccCCCCccEEEcc
Confidence 9999999988764 4444 455555555665432 1125666777777777
Q ss_pred eCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEe
Q 038480 640 LRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVT 719 (850)
Q Consensus 640 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~ 719 (850)
.|.+..+.. ...+++|+.|++++|. +..++ .+..+++|+.|++++| .+..+. ....+++|+.|+
T Consensus 160 ~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N-~l~~~~--------~l~~l~~L~~L~ 223 (308)
T 1h6u_A 160 NAQVSDLTP----LANLSKLTTLKADDNK-ISDIS--PLASLPNLIEVHLKNN-QISDVS--------PLANTSNLFIVT 223 (308)
T ss_dssp SSCCCCCGG----GTTCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECTTS-CCCBCG--------GGTTCTTCCEEE
T ss_pred CCcCCCChh----hcCCCCCCEEECCCCc-cCcCh--hhcCCCCCCEEEccCC-ccCccc--------cccCCCCCCEEE
Confidence 666555443 2234577777777765 33333 2667788888888887 344331 123678888888
Q ss_pred cccCC
Q 038480 720 IDCCK 724 (850)
Q Consensus 720 L~~~~ 724 (850)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 88885
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=7e-16 Score=174.10 Aligned_cols=217 Identities=18% Similarity=0.148 Sum_probs=166.2
Q ss_pred CCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCC
Q 038480 529 FMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 529 ~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~ 607 (850)
.+++|++|+|++| .+..+ |..++.+++|++|+|++|.++.++. + +.+++|++|++++|.+++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l---------------~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-L---------------ESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C---------------TTCTTCCEEECCSSEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c---------------ccCCCCCEEEecCCcCCC
Confidence 4458999999999 77666 4689999999999999999986653 3 455667777777776432
Q ss_pred CCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCee
Q 038480 608 DPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKL 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 687 (850)
+...++|+.|+++.|.+..+.. ..+++|+.|++++|.. ...+...+..+++|+.|
T Consensus 95 -------------------l~~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 95 -------------------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYL 149 (487)
T ss_dssp -------------------EEECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEE
T ss_pred -------------------CCCCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEE
Confidence 2334889999999988766543 1246899999999874 44433567889999999
Q ss_pred eeccCCCCcccccccccCCCCC-CCCCCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCc
Q 038480 688 DFAYCSNLEEFNYVELRTAREP-YGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNP 766 (850)
Q Consensus 688 ~l~~~~~l~~l~~~~~~~~~~~-~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 766 (850)
++++|. +..+. +... ..+++|+.|+|++|. +..++....+++|++|+|++| .++.+++ .+..
T Consensus 150 ~Ls~N~-l~~~~------~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--------~~~~ 212 (487)
T 3oja_A 150 DLKLNE-IDTVN------FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGP--------EFQS 212 (487)
T ss_dssp ECTTSC-CCEEE------GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECG--------GGGG
T ss_pred ECCCCC-CCCcC------hHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCH--------hHcC
Confidence 999994 44331 1111 147999999999994 666676777999999999995 5677765 5678
Q ss_pred CCCccEeeccccccccccccCCCCCCCccEEeeccCCCC
Q 038480 767 FAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECPKL 805 (850)
Q Consensus 767 ~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~~L 805 (850)
+++|+.|+|+++ .+..++.....+++|+.|++++|+-.
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 999999999996 57788887888999999999988643
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.6e-15 Score=160.64 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=137.7
Q ss_pred ecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccccccccc
Q 038480 492 LLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELP 571 (850)
Q Consensus 492 l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP 571 (850)
+..+.+..+.....+++|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+|
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred hCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 333444444444567889999999998887763 788999999999999 8888887 888999999999999888764
Q ss_pred chhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhc
Q 038480 572 NELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWS 651 (850)
Q Consensus 572 ~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~ 651 (850)
.+ ..+++|++|++.+|.+.. +..+..+++|+.|+++.|.+..+..+
T Consensus 102 -~~---------------~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~l~~n~l~~~~~l-- 147 (308)
T 1h6u_A 102 -AI---------------AGLQSIKTLDLTSTQITD----------------VTPLAGLSNLQVLYLDLNQITNISPL-- 147 (308)
T ss_dssp -GG---------------TTCTTCCEEECTTSCCCC----------------CGGGTTCTTCCEEECCSSCCCCCGGG--
T ss_pred -hh---------------cCCCCCCEEECCCCCCCC----------------chhhcCCCCCCEEECCCCccCcCccc--
Confidence 23 456667777788887543 22377888888888887776655432
Q ss_pred CCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc
Q 038480 652 SPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW 731 (850)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~ 731 (850)
..+++|+.|++++|. +..++ .+..+++|+.|++++| .+..++. ...+++|+.|++++| .+..++.
T Consensus 148 --~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--------l~~l~~L~~L~L~~N-~l~~~~~ 212 (308)
T 1h6u_A 148 --AGLTNLQYLSIGNAQ-VSDLT--PLANLSKLTTLKADDN-KISDISP--------LASLPNLIEVHLKNN-QISDVSP 212 (308)
T ss_dssp --GGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCCCGG--------GGGCTTCCEEECTTS-CCCBCGG
T ss_pred --cCCCCccEEEccCCc-CCCCh--hhcCCCCCCEEECCCC-ccCcChh--------hcCCCCCCEEEccCC-ccCcccc
Confidence 234567777777765 33333 1566677777777766 3333311 224667777777776 3455555
Q ss_pred cccCCCCceEEeeccc
Q 038480 732 LAFAPNLKFVHIERCY 747 (850)
Q Consensus 732 l~~l~~L~~L~L~~c~ 747 (850)
+..+++|++|++++|.
T Consensus 213 l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEEEEEEE
T ss_pred ccCCCCCCEEEccCCe
Confidence 6667777777777643
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=2.6e-15 Score=166.53 Aligned_cols=303 Identities=14% Similarity=0.082 Sum_probs=183.3
Q ss_pred CcccchhHHHHHHHHHh-cc------CCceEEEE--EcCCCChHHHHHHHHHHhhccC--CCCCC-EEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCF-EE------VQVGIIGL--YGMGGVGKTTLLTQINNKFIDT--PNDFD-VVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l-~~------~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~s~~~~~~ 197 (850)
..++||+.+++++.+++ .. ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999988 42 23456777 9999999999999999876210 01222 46788887778899
Q ss_pred HHHHHHHHHhcCC---CCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc--------ccccccccC---CCCC--CCeE
Q 038480 198 RIQEKIGERIGSF---GNKSLEEKASDIFKILS--KKKFLLLLDDVWERI--------DLVKVGVPF---PTSE--NASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~---~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~l---~~~~--~gs~ 259 (850)
.++..++.+++.. ...+..+....+.+.+. +++++|||||++... .+..+...+ +..+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998762 13345666777777775 679999999997532 222221111 1112 3455
Q ss_pred EEEecCchhHhhhcc---------CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcC------CCch
Q 038480 260 VVFTTRLVDVCSLMG---------AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECA------GLPL 324 (850)
Q Consensus 260 iivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------G~Pl 324 (850)
||+||+..++...+. ....+.+.+++.++++++|...+.... ....-..+....|++.|+ |.|.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 787887655432111 122399999999999999976542111 001122567889999999 9997
Q ss_pred HHHHHHhhh-c-----CC--CCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCC--CCcc
Q 038480 325 ALITIGRAM-G-----SK--NTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFP--EDYQ 394 (850)
Q Consensus 325 ai~~~~~~l-~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp--~~~~ 394 (850)
.+..+.... . .. -+.+.+..++..... ...+.-++..||+ +.+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 665554321 1 11 133344433322110 1223345678998 7898888888653 2334
Q ss_pred cCHHHHHHHH--HH-cCCCCCCCCccchhhHHHHHHHHHHhhhcccc-----CcceEEEhhhH
Q 038480 395 ISKIELIECW--IG-EGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV-----GTNFVKMHDVI 449 (850)
Q Consensus 395 i~~~~li~~w--~a-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~mHdlv 449 (850)
+....+...+ ++ .- .. . ..........+++.|...+|+... ..+.|++|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTM-YN-V-KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHH-SC-C-CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhh-cC-C-CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5555554444 22 10 00 0 111234566789999999999764 23345555544
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.4e-16 Score=179.65 Aligned_cols=302 Identities=20% Similarity=0.177 Sum_probs=201.2
Q ss_pred ccccceEEEeecccccccc--cCC-CCCC----ccceeecccccCCC----CchhhhcCCCcceEEEccCCCCCcc-cCh
Q 038480 482 RKWRDRRRISLLRNKIVAL--SET-PTCP----HLVTLFLAINKLDT----ITSNFFDFMPSLRVLNLSKNLSLKQ-LPS 549 (850)
Q Consensus 482 ~~~~~l~~L~l~~n~~~~l--~~~-~~~~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~ 549 (850)
..++++++|++++|.+... ..+ ..++ +|++|++++|.++. ..+..+..+++|++|+|++| .++. .+.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 131 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQ 131 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHH
Confidence 4457899999999987652 111 1223 79999999998874 23566889999999999999 5653 233
Q ss_pred hhc-----cccCCCeEeeccccccc-----ccchhhcCCccceeecc---------cccc-----cCCCccEEeccCCCC
Q 038480 550 EIS-----KLVSLQYLNLSETSIKE-----LPNELKALTNLKCWNLE---------QLIS-----SFSDLRVLRMLDCGF 605 (850)
Q Consensus 550 ~i~-----~l~~L~~L~Ls~~~i~~-----LP~~i~~L~~L~~L~l~---------~~i~-----~l~~L~~L~l~~~~~ 605 (850)
.+. ..++|++|++++|.++. ++..+..+++|++|+++ ..+. .+++|++|++.+|.+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 332 25679999999998874 56778889999999997 1111 356999999999986
Q ss_pred CCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhh--hhhc-CCCccccceEEEeeecCCCCcccc----ccc
Q 038480 606 TADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQ--KLWS-SPKLQSSTKSLQLRECKDSKSLNI----SYL 678 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~--~l~~-~~~~~~~L~~L~l~~~~~~~~~~~----~~l 678 (850)
+... .......+..+++|+.|+++.|.+.... .+.. .....++|+.|++++|. ++.... ..+
T Consensus 212 ~~~~----------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 280 (461)
T 1z7x_W 212 TSDN----------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL 280 (461)
T ss_dssp BTTH----------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred cHHH----------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH
Confidence 5310 1123556788999999999998765432 1111 11224689999999985 444211 345
Q ss_pred cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCC-----c-ccccCCCCceEEeeccccccee
Q 038480 679 ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEV-----T-WLAFAPNLKFVHIERCYEMDEI 752 (850)
Q Consensus 679 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-----~-~l~~l~~L~~L~L~~c~~l~~i 752 (850)
..+++|++|++++|. +......... .......++|++|++++|. +... + .+..+++|++|+|++|. +++.
T Consensus 281 ~~~~~L~~L~Ls~n~-i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 356 (461)
T 1z7x_W 281 RAKESLKELSLAGNE-LGDEGARLLC-ETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 356 (461)
T ss_dssp HHCTTCCEEECTTCC-CHHHHHHHHH-HHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHH
T ss_pred hhCCCcceEECCCCC-CchHHHHHHH-HHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccc
Confidence 668999999999984 4321000000 0001124699999999995 4332 2 35678999999999974 4443
Q ss_pred ccccccCCCCCC-CcCCCccEeecccccccc-----ccccCCCCCCCccEEeeccCC
Q 038480 753 ISVWKLGEVPGL-NPFAKLQCLRLQDLSNLE-----KIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 753 ~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~-----~i~~~~~~~~~L~~L~i~~C~ 803 (850)
....... .+ ...++|+.|++++|. ++ .++.....+++|++|++++|+
T Consensus 357 ~~~~l~~---~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 357 GVRELCQ---GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHH---HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cHHHHHH---HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2110000 11 126799999999984 44 455555568999999999983
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=3.2e-15 Score=155.88 Aligned_cols=202 Identities=21% Similarity=0.192 Sum_probs=119.6
Q ss_pred cceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEe
Q 038480 485 RDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLN 561 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~ 561 (850)
+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 35667777777666654 3556667777777777666666655666777777777776 554443 4566667777777
Q ss_pred ecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeC
Q 038480 562 LSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLR 641 (850)
Q Consensus 562 Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 641 (850)
+++|.+..++. ..++.+++|++|++.+|.+.... .+..+.++++|+.|+++.|
T Consensus 107 l~~n~l~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~-------------l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 107 AVETNLASLEN--------------FPIGHLKTLKELNVAHNLIQSFK-------------LPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CTTSCCCCSTT--------------CCCTTCTTCCEEECCSSCCCCCC-------------CCGGGGGCTTCCEEECCSS
T ss_pred CCCCCccccCc--------------hhcccCCCCCEEECcCCccceec-------------CchhhccCCCCCEEECCCC
Confidence 77776665543 12345566666666666644311 2345666777777777776
Q ss_pred chhhhhhhhcCCCccccce----EEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccE
Q 038480 642 SFCALQKLWSSPKLQSSTK----SLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQR 717 (850)
Q Consensus 642 ~~~~l~~l~~~~~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~ 717 (850)
.+..+..- ....+.+|+ .|++++|. +..++...+ ...+|+.|++++|. +..++ ......+++|+.
T Consensus 160 ~l~~~~~~--~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~------~~~~~~l~~L~~ 228 (276)
T 2z62_A 160 KIQSIYCT--DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF-KEIRLKELALDTNQ-LKSVP------DGIFDRLTSLQK 228 (276)
T ss_dssp CCCEECGG--GGHHHHTCTTCCEEEECCSSC-CCEECTTSS-CSCCEEEEECCSSC-CSCCC------TTTTTTCCSCCE
T ss_pred CCCcCCHH--HhhhhhhccccceeeecCCCc-ccccCcccc-CCCcccEEECCCCc-eeecC------HhHhcccccccE
Confidence 65443210 011112333 67777765 344442222 33478888888884 54441 112346788999
Q ss_pred EecccCCC
Q 038480 718 VTIDCCKK 725 (850)
Q Consensus 718 L~L~~~~~ 725 (850)
|++++|+.
T Consensus 229 L~l~~N~~ 236 (276)
T 2z62_A 229 IWLHTNPW 236 (276)
T ss_dssp EECCSSCB
T ss_pred EEccCCcc
Confidence 99998863
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=3.5e-16 Score=166.24 Aligned_cols=251 Identities=18% Similarity=0.207 Sum_probs=174.3
Q ss_pred CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCc--ccChhhc-------cccCCCeEeecccccc-cccch
Q 038480 504 PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLK--QLPSEIS-------KLVSLQYLNLSETSIK-ELPNE 573 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~--~lp~~i~-------~l~~L~~L~Ls~~~i~-~LP~~ 573 (850)
...++|+.|++++|.+ .+|..+... |++|+|++| .+. .+|..+. ++++|++|++++|.++ .+|..
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456788889998888 677654433 888888888 554 4666665 7889999999999887 56654
Q ss_pred hhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhcc--CCCCCEEEEEeCchhhhhhhhc
Q 038480 574 LKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELIN--LKHLDVLTVSLRSFCALQKLWS 651 (850)
Q Consensus 574 i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--L~~L~~L~l~~~~~~~l~~l~~ 651 (850)
+. +..+++|++|++.+|.+.+.+ ..+..+.. +++|+.|+++.|.+..+.. .
T Consensus 115 ~~-------------~~~l~~L~~L~Ls~N~l~~~~------------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--~ 167 (312)
T 1wwl_A 115 LL-------------EATGPDLNILNLRNVSWATRD------------AWLAELQQWLKPGLKVLSIAQAHSLNFSC--E 167 (312)
T ss_dssp SS-------------SCCSCCCSEEEEESCBCSSSS------------SHHHHHHTTCCTTCCEEEEESCSCCCCCT--T
T ss_pred HH-------------HhcCCCccEEEccCCCCcchh------------HHHHHHHHhhcCCCcEEEeeCCCCccchH--H
Confidence 41 145667778888888865421 12223322 2899999999998766442 2
Q ss_pred CCCccccceEEEeeecCCCCcccc-ccc--cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCC
Q 038480 652 SPKLQSSTKSLQLRECKDSKSLNI-SYL--ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKE 728 (850)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~~~~~~~-~~l--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 728 (850)
....+++|+.|++++|...+..+. ..+ ..+++|++|++++| .+..++.... .....+++|+.|++++|.....
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCS---ALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHH---HHHHTTCCCSEEECTTSCCCSS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHH---HHHhcCCCCCEEECCCCcCCcc
Confidence 334567999999999985443211 123 78899999999999 4443311110 0011468999999999954333
Q ss_pred C--cccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeeccCC
Q 038480 729 V--TWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVSECP 803 (850)
Q Consensus 729 l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~~C~ 803 (850)
. +.+..+++|++|++++|. ++.++. .+. ++|+.|+++++ .++.++. ...+++|++|++++.+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~ip~--------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQVPK--------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSSCCS--------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCc-cChhhh--------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 3 235678999999999964 566654 233 89999999996 5777765 7789999999998874
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=5.7e-15 Score=153.95 Aligned_cols=213 Identities=20% Similarity=0.209 Sum_probs=136.1
Q ss_pred ecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEeecccccccc
Q 038480 492 LLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSETSIKEL 570 (850)
Q Consensus 492 l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~L 570 (850)
-.+.++..+|.. -.++|++|++++|.++.+++..|.++++|++|++++| .+..++. .+..+++|++|++++|.++.+
T Consensus 14 c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 14 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 334445555542 1357999999999999888877999999999999999 7777664 788999999999999999877
Q ss_pred cc-hhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhh
Q 038480 571 PN-ELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKL 649 (850)
Q Consensus 571 P~-~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l 649 (850)
|. .+ ..+++|++|++.+|.+...+ ...+..+++|+.|+++.|.+..+. +
T Consensus 92 ~~~~~---------------~~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~-l 141 (276)
T 2z62_A 92 ALGAF---------------SGLSSLQKLVAVETNLASLE--------------NFPIGHLKTLKELNVAHNLIQSFK-L 141 (276)
T ss_dssp CTTTT---------------TTCTTCCEEECTTSCCCCST--------------TCCCTTCTTCCEEECCSSCCCCCC-C
T ss_pred Chhhh---------------cCCccccEEECCCCCccccC--------------chhcccCCCCCEEECcCCccceec-C
Confidence 53 34 45566677777777754321 123678899999999988765421 1
Q ss_pred hcCCCccccceEEEeeecCCCCccccccccCcCCcC----eeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC
Q 038480 650 WSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLD----KLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK 725 (850)
Q Consensus 650 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 725 (850)
+.....+++|+.|++++|. ++.++...+..+++|+ .|++++| .+..+ +.......+|+.|++++|.
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~-------~~~~~~~~~L~~L~L~~n~- 211 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFI-------QPGAFKEIRLKELALDTNQ- 211 (276)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEE-------CTTSSCSCCEEEEECCSSC-
T ss_pred chhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCC-ccccc-------CccccCCCcccEEECCCCc-
Confidence 1122234577777777765 3333323344444444 5666666 23323 1111123366666666663
Q ss_pred CCCCcc--cccCCCCceEEeecc
Q 038480 726 LKEVTW--LAFAPNLKFVHIERC 746 (850)
Q Consensus 726 l~~l~~--l~~l~~L~~L~L~~c 746 (850)
+..++. +..+++|++|+|++|
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCHhHhcccccccEEEccCC
Confidence 444432 455666666666654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=4.4e-15 Score=155.57 Aligned_cols=201 Identities=21% Similarity=0.187 Sum_probs=143.8
Q ss_pred cccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeE
Q 038480 481 VRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYL 560 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L 560 (850)
...+++++.+++.++.+..+|... .+++++|++++|.++.+++..|..+++|++|+|++| .++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 445678999999999999886532 378999999999999888888999999999999999 88888764 889999999
Q ss_pred eecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEe
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSL 640 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 640 (850)
++++|.++.+|..+..+++|++|+ +.+|.++..+ ...+.++++|+.|+++.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~---------------l~~N~l~~l~--------------~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLD---------------VSFNRLTSLP--------------LGALRGLGELQELYLKG 133 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEE---------------CCSSCCCCCC--------------SSTTTTCTTCCEEECTT
T ss_pred ECCCCcCCcCchhhccCCCCCEEE---------------CCCCcCcccC--------------HHHHcCCCCCCEEECCC
Confidence 999999999987766665555554 4455433211 12344556666666665
Q ss_pred CchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEec
Q 038480 641 RSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTI 720 (850)
Q Consensus 641 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L 720 (850)
|.+..+.. .....+++|+.|++++|. ++.++...+..+++|+.|++++| .+..+ +.....+.+|+.|.|
T Consensus 134 N~l~~~~~--~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~i-------p~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 134 NELKTLPP--GLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTI-------PKGFFGSHLLPFAFL 202 (290)
T ss_dssp SCCCCCCT--TTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCC-------CTTTTTTCCCSEEEC
T ss_pred CCCCccCh--hhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCcc-------ChhhcccccCCeEEe
Confidence 55543322 111234577777777775 45555455677889999999888 45544 333335678999999
Q ss_pred ccCC
Q 038480 721 DCCK 724 (850)
Q Consensus 721 ~~~~ 724 (850)
.+|+
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9886
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=7.9e-15 Score=152.24 Aligned_cols=199 Identities=21% Similarity=0.271 Sum_probs=136.9
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhh-ccccCCCeEeecc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEI-SKLVSLQYLNLSE 564 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~l~~L~~L~Ls~ 564 (850)
..+.++++++.++.+|... .++|+.|++++|.++.+++..|..+++|++|+|++| .++.+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4677888888888876532 368999999999998888877899999999999999 788887654 7799999999999
Q ss_pred cccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchh
Q 038480 565 TSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFC 644 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 644 (850)
|.++.+|... +..+++|++|++.+|.+... ....+.++++|+.|+++.|.+.
T Consensus 95 n~l~~~~~~~--------------~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 95 NKLQALPIGV--------------FDQLVNLAELRLDRNQLKSL--------------PPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCCCCCCTTT--------------TTTCSSCCEEECCSSCCCCC--------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHhH--------------cccccCCCEEECCCCccCee--------------CHHHhCcCcCCCEEECCCCcCC
Confidence 9988877532 23344455555555554331 1123456666777776666554
Q ss_pred hhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCC
Q 038480 645 ALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCK 724 (850)
Q Consensus 645 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 724 (850)
.+.. .....+++|+.|++++|. +..++...+..+++|+.|++++| .+..++ ......+++|+.|++++|+
T Consensus 147 ~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 147 SLPK--GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVP------EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCT--TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred ccCH--hHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCC------HHHhccccCCCEEEecCCC
Confidence 4332 112334677777777775 44444345777888999999888 444441 1123457889999999886
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=5.3e-17 Score=183.14 Aligned_cols=195 Identities=22% Similarity=0.231 Sum_probs=92.5
Q ss_pred ceEEEeeccccccccc--C-CCCCCccceeecccccCCCC----chhhhcCCCcceEEEccCCCCCcc-cChhhc-ccc-
Q 038480 486 DRRRISLLRNKIVALS--E-TPTCPHLVTLFLAINKLDTI----TSNFFDFMPSLRVLNLSKNLSLKQ-LPSEIS-KLV- 555 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~--~-~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~-~l~- 555 (850)
++++|++++|.+...+ . +..+++|++|++++|.++.. .+..+..+++|++|+|++| .++. .+..+. .+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhh
Confidence 4566666666554331 1 34455666666666655422 1233555566666666666 4432 122222 233
Q ss_pred ---CCCeEeecccccc-----cccchhhcCCccceeecc---------c----c-cccCCCccEEeccCCCCCCCCCCCc
Q 038480 556 ---SLQYLNLSETSIK-----ELPNELKALTNLKCWNLE---------Q----L-ISSFSDLRVLRMLDCGFTADPVPED 613 (850)
Q Consensus 556 ---~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~l~---------~----~-i~~l~~L~~L~l~~~~~~~~~~~~~ 613 (850)
+|++|++++|.+. .+|..+..+++|++|+++ . . ....++|++|++.+|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 4666666666555 345556666666666665 0 0 112345666666666543200
Q ss_pred ccccCCccccHHHhccCCCCCEEEEEeCchhhhh--hhhcCC-CccccceEEEeeecCCCCccc----cccccCcCCcCe
Q 038480 614 SVLFGGSEILVEELINLKHLDVLTVSLRSFCALQ--KLWSSP-KLQSSTKSLQLRECKDSKSLN----ISYLADLKHLDK 686 (850)
Q Consensus 614 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~--~l~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~ 686 (850)
.......+..+++|+.|+++.|.+.... .+.... ...++|+.|++++|. ++... ...+..+++|+.
T Consensus 159 ------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 159 ------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp ------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCE
T ss_pred ------HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccE
Confidence 0112334455566666666655543211 111000 011355666666554 22210 022344555666
Q ss_pred eeeccC
Q 038480 687 LDFAYC 692 (850)
Q Consensus 687 L~l~~~ 692 (850)
|++++|
T Consensus 232 L~Ls~n 237 (461)
T 1z7x_W 232 LALGSN 237 (461)
T ss_dssp EECCSS
T ss_pred EeccCC
Confidence 666555
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=6.6e-15 Score=149.85 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=67.9
Q ss_pred ccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEeecc-ccccccc
Q 038480 494 RNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSE-TSIKELP 571 (850)
Q Consensus 494 ~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~-~~i~~LP 571 (850)
.+++..+|. -.++|++|++++|.++.+++..|.++++|++|++++|..++.+|. .+..+++|++|++++ |.++.+|
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 333566665 334788888888888888877788888888888888833777765 677888888888887 7777776
Q ss_pred chhhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 572 NELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 572 ~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
.. .+..+++|++|++.+|.+.
T Consensus 98 ~~--------------~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 98 PD--------------ALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TT--------------SEECCTTCCEEEEEEECCC
T ss_pred HH--------------HhCCCCCCCEEeCCCCCCc
Confidence 32 1234555566666666543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=2.8e-15 Score=152.60 Aligned_cols=185 Identities=15% Similarity=0.231 Sum_probs=124.6
Q ss_pred cccCcccccccceEEEeecccccccccC--CCCCCccceeeccccc-CCCCchhhhcCCCcceEEEccC-CCCCcccC-h
Q 038480 475 LSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINK-LDTITSNFFDFMPSLRVLNLSK-NLSLKQLP-S 549 (850)
Q Consensus 475 ~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~-~~~i~~lp-~ 549 (850)
+...|. -..+++.|++++|.+..++. +..+++|++|++++|. ++.+++..|.++++|++|++++ | .++.+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 444454 34589999999999999864 6889999999999997 9999988899999999999998 7 888877 4
Q ss_pred hhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCC-CCCCCCCCCcccccCCccccHHHhc
Q 038480 550 EISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDC-GFTADPVPEDSVLFGGSEILVEELI 628 (850)
Q Consensus 550 ~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~ 628 (850)
.+..+++|++|++++|.++.+|. +..+++|+ .|++|++.+| .+... ....+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~------------~L~~L~l~~N~~l~~i--------------~~~~~~ 152 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD------------IFFILEITDNPYMTSI--------------PVNAFQ 152 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCC------------SEEEEEEESCTTCCEE--------------CTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccc------------cccEEECCCCcchhhc--------------Cccccc
Confidence 67899999999999999999886 55544433 2447777777 54321 122355
Q ss_pred cCCCCC-EEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCc-CCcCeeeeccC
Q 038480 629 NLKHLD-VLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADL-KHLDKLDFAYC 692 (850)
Q Consensus 629 ~L~~L~-~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 692 (850)
++++|+ .|+++.|.+..++... ... ++|+.|++++|..++.++...+..+ ++|+.|++++|
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~--~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYA--FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTT--TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred chhcceeEEEcCCCCCcccCHhh--cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 566666 6666655544332211 111 3455555555533333332334444 45555555444
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=4.2e-15 Score=154.46 Aligned_cols=205 Identities=20% Similarity=0.228 Sum_probs=129.1
Q ss_pred cccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCC
Q 038480 479 PEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSL 557 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L 557 (850)
.....+++++.|++.+|.+..++.+..+++|++|++++|.+.+++ .+..+++|++|++++| .++.+|.. ++.+++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 344566788888888888888877788888888888888887754 3788888888888888 67666543 5788888
Q ss_pred CeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 558 QYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
++|++++|.++.+|... ++.+++|++|++.+|.+...+ ...+..+++|+.|+
T Consensus 112 ~~L~L~~n~l~~~~~~~--------------~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGV--------------FDKLTNLTYLNLAHNQLQSLP--------------KGVFDKLTNLTELD 163 (272)
T ss_dssp CEEECTTSCCCCCCTTT--------------TTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCccCHHH--------------hccCCCCCEEECCCCccCccC--------------HHHhccCccCCEEE
Confidence 88888888888776431 234455666666666644311 11234444555444
Q ss_pred EEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccE
Q 038480 638 VSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQR 717 (850)
Q Consensus 638 l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~ 717 (850)
++.|.+ +.++...+..+++|+.|++++|. +..++ +.....+++|+.
T Consensus 164 l~~n~l---------------------------~~~~~~~~~~l~~L~~L~L~~N~-l~~~~------~~~~~~l~~L~~ 209 (272)
T 3rfs_A 164 LSYNQL---------------------------QSLPEGVFDKLTQLKDLRLYQNQ-LKSVP------DGVFDRLTSLQY 209 (272)
T ss_dssp CCSSCC---------------------------CCCCTTTTTTCTTCCEEECCSSC-CSCCC------TTTTTTCTTCCE
T ss_pred CCCCCc---------------------------CccCHHHhcCCccCCEEECCCCc-CCccC------HHHHhCCcCCCE
Confidence 444332 22222334566677777777663 33230 112235677777
Q ss_pred EecccCCCCCCCcccccCCCCceEEeecccccceecc
Q 038480 718 VTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIIS 754 (850)
Q Consensus 718 L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~ 754 (850)
|++.+|+. .+.+|+|+.|++..|.....+|.
T Consensus 210 L~l~~N~~------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 210 IWLHDNPW------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp EECCSSCB------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred EEccCCCc------cccCcHHHHHHHHHHhCCCcccC
Confidence 77777742 24456777777766555445543
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=8.1e-16 Score=179.32 Aligned_cols=298 Identities=13% Similarity=0.117 Sum_probs=148.9
Q ss_pred cccceEEEeeccccccccc------CCCCCCccceeecccccCCCCc----hhhhcCCCcceEEEccCCCCCcccChhhc
Q 038480 483 KWRDRRRISLLRNKIVALS------ETPTCPHLVTLFLAINKLDTIT----SNFFDFMPSLRVLNLSKNLSLKQLPSEIS 552 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~------~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~ 552 (850)
.++++++|++.+|.+.+.. ....+++|++|++++|.++.+. +..+..+++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 4566777777777654321 1135667777777777665222 233456677777777776 5666666666
Q ss_pred cccCCCeEeeccccc----ccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCc
Q 038480 553 KLVSLQYLNLSETSI----KELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGS 620 (850)
Q Consensus 553 ~l~~L~~L~Ls~~~i----~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 620 (850)
.+++|++|+++.+.. ...+..+..+++|+.|++. ..+..+++|++|++.+|.++.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~------------- 307 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET------------- 307 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH-------------
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH-------------
Confidence 677777777764311 1233445555566665554 223456677777777665321
Q ss_pred cccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeee----------cCCCCccc----------------
Q 038480 621 EILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRE----------CKDSKSLN---------------- 674 (850)
Q Consensus 621 ~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~---------------- 674 (850)
......+..+++|+.|++. +.... ..+......+++|+.|++++ |..++...
T Consensus 308 ~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 1111224555666666665 22111 11111111234555555553 33333221
Q ss_pred ---------cccccC-cCCcCeeeeccC---CCCcccccccccCCCCCCCCCCccEEecccCCC-CCC--Cccc-ccCCC
Q 038480 675 ---------ISYLAD-LKHLDKLDFAYC---SNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK-LKE--VTWL-AFAPN 737 (850)
Q Consensus 675 ---------~~~l~~-~~~L~~L~l~~~---~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~--l~~l-~~l~~ 737 (850)
...+.. +++|+.|+++++ ..+...+..... ......+++|++|+++.|.. +.. +..+ ..+++
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~-~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV-RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH-HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH-HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 111221 444444444422 122211000000 00011356666666665432 111 1112 23667
Q ss_pred CceEEeecccccce-eccccccCCCCCCCcCCCccEeeccccccccc--cccCCCCCCCccEEeeccCCCCCC
Q 038480 738 LKFVHIERCYEMDE-IISVWKLGEVPGLNPFAKLQCLRLQDLSNLEK--IYWNALSFPDLLELFVSECPKLKK 807 (850)
Q Consensus 738 L~~L~L~~c~~l~~-i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--i~~~~~~~~~L~~L~i~~C~~L~~ 807 (850)
|++|+|++|. ++. ... ..+..+++|+.|+|++|+ +.. ++.....+++|++|++++|+ ++.
T Consensus 465 L~~L~L~~n~-l~~~~~~-------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 465 VRWMLLGYVG-ESDEGLM-------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CCEEEECSCC-SSHHHHH-------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ceEeeccCCC-CCHHHHH-------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 7777776654 222 111 123567889999999887 432 22223468899999999996 654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.6e-14 Score=154.39 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=56.5
Q ss_pred EEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCe-Eeecccc
Q 038480 489 RISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQY-LNLSETS 566 (850)
Q Consensus 489 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~-L~Ls~~~ 566 (850)
.++-++++++.+|.-. .+++++|++++|.++.+++..|.++++|++|+|++|...+.+|. .+.++++|+. +.+++|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3445555566555321 24666666666666666666666666666666666633344443 3455665554 4444556
Q ss_pred cccccchhhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 567 IKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 567 i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
++.+|.. .+..+++|++|++.+|.+.
T Consensus 92 l~~l~~~--------------~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 92 LLYINPE--------------AFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp CCEECTT--------------SBCCCTTCCEEEEEEECCS
T ss_pred ccccCch--------------hhhhccccccccccccccc
Confidence 6655432 1234455556666666543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=3.1e-15 Score=155.44 Aligned_cols=225 Identities=16% Similarity=0.247 Sum_probs=149.6
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
++..+++..+.+........+++|+.|++.+|.+..++. +..+++|++|++++| .+..++ .++.+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC
Confidence 334445555555555555667888888888888776554 777888888888888 676665 6788888888888888
Q ss_pred ccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 566 SIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
.++.+|... ++.+++|++|++.+|.+...+ ...+.++++
T Consensus 96 ~l~~~~~~~--------------~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~------------- 134 (272)
T 3rfs_A 96 QLQSLPNGV--------------FDKLTNLKELVLVENQLQSLP--------------DGVFDKLTN------------- 134 (272)
T ss_dssp CCCCCCTTT--------------TTTCTTCCEEECTTSCCCCCC--------------TTTTTTCTT-------------
T ss_pred ccCccChhH--------------hcCCcCCCEEECCCCcCCccC--------------HHHhccCCC-------------
Confidence 887766431 244556666777777654311 112334444
Q ss_pred hhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC
Q 038480 646 LQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK 725 (850)
Q Consensus 646 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 725 (850)
|+.|++++|. ++.++...+..+++|+.|++++| .+..++ +...+.+++|+.|++++|.
T Consensus 135 -------------L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~------~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 135 -------------LTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLP------EGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp -------------CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC------TTTTTTCTTCCEEECCSSC-
T ss_pred -------------CCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcCccC------HHHhcCCccCCEEECCCCc-
Confidence 4555555553 33333344678899999999999 444441 2223468999999999995
Q ss_pred CCCCcc--cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCC
Q 038480 726 LKEVTW--LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFP 792 (850)
Q Consensus 726 l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~ 792 (850)
+..++. +..+++|++|++++|+. .+.+|+|+.|.+..+.....++...+.++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~---------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPW---------------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCB---------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCc---------------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 545543 78899999999999742 24577899888887655556665544443
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=6.6e-16 Score=180.10 Aligned_cols=289 Identities=13% Similarity=0.162 Sum_probs=182.4
Q ss_pred ccccceEEEeecccccccc-----cC-CCCCCccceeecccccCCCCchhhhcCCCcceEEEcc----------------
Q 038480 482 RKWRDRRRISLLRNKIVAL-----SE-TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLS---------------- 539 (850)
Q Consensus 482 ~~~~~l~~L~l~~n~~~~l-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls---------------- 539 (850)
..+++++.|++++|.+..+ +. +..+++|++|++.+|.+.+++ ..+..+++|+.|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 3456788888887776522 21 246788888888887766544 345566666666665
Q ss_pred -----------CCCCCcccChhhccccCCCeEeecccccc--cccchhhcCCccceeecc---------cccccCCCccE
Q 038480 540 -----------KNLSLKQLPSEISKLVSLQYLNLSETSIK--ELPNELKALTNLKCWNLE---------QLISSFSDLRV 597 (850)
Q Consensus 540 -----------~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~l~---------~~i~~l~~L~~ 597 (850)
++ ....+|..+..+++|++|++++|.+. .++..+..+++|++|++. .....+++|++
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 33 34456666677888888888888765 334456788888888885 22356788999
Q ss_pred EeccC----------CCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhh--hhhhcCCCccccceEEEee
Q 038480 598 LRMLD----------CGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCAL--QKLWSSPKLQSSTKSLQLR 665 (850)
Q Consensus 598 L~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l--~~l~~~~~~~~~L~~L~l~ 665 (850)
|++.+ |.... ......-...+++|+.|++..+.++.. ..+. ..+++|+.|+++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~------------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~ 411 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVS------------QRGLIALAQGCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLV 411 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCC------------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEE
T ss_pred EEeecCccccccccccCccC------------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEe
Confidence 98884 33111 111222245689999999977765432 2221 224689999998
Q ss_pred e---cCCCCcccc-----ccccCcCCcCeeeeccCCC-CcccccccccCCCCCCCCCCccEEecccCCCCCC--Cc-ccc
Q 038480 666 E---CKDSKSLNI-----SYLADLKHLDKLDFAYCSN-LEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKE--VT-WLA 733 (850)
Q Consensus 666 ~---~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--l~-~l~ 733 (850)
. |..++..+. ..+..+++|+.|++++|.+ +..- .... . ...+++|+.|+|++|. +.. ++ .+.
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-~~~~--~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~ 485 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-GLSY--I--GQYSPNVRWMLLGYVG-ESDEGLMEFSR 485 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-HHHH--H--HHSCTTCCEEEECSCC-SSHHHHHHHHT
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-HHHH--H--HHhCccceEeeccCCC-CCHHHHHHHHh
Confidence 5 444554321 1245689999999987653 2211 0110 1 1147899999999985 433 23 256
Q ss_pred cCCCCceEEeeccccccee-ccccccCCCCCCCcCCCccEeeccccccccccccC--CCCCCCccEEeeccC
Q 038480 734 FAPNLKFVHIERCYEMDEI-ISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWN--ALSFPDLLELFVSEC 802 (850)
Q Consensus 734 ~l~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~--~~~~~~L~~L~i~~C 802 (850)
.+++|++|+|++|. ++.. .. .....+++|+.|+|++|. ++..... ...+|.|....+...
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~-------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIA-------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHH-------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCcccCeeeccCCC-CcHHHHH-------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 78999999999998 4332 11 123568999999999987 5443221 235677766666543
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.8e-14 Score=155.52 Aligned_cols=231 Identities=17% Similarity=0.205 Sum_probs=164.7
Q ss_pred cCCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCC-CCchhhhcCCCcceE-EEccCCCCCcc
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLD-TITSNFFDFMPSLRV-LNLSKNLSLKQ 546 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~-L~Ls~~~~i~~ 546 (850)
.+.+++..|.. -.+++++|++++|.++.++. +.++++|++|++++|.+. .++...|.++++|+. +.+++| .+..
T Consensus 17 ~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLY 94 (350)
T ss_dssp ESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCCE
T ss_pred cCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-cccc
Confidence 34455555542 24689999999999999964 689999999999999964 467778999998775 556666 7887
Q ss_pred c-ChhhccccCCCeEeecccccccccch-hhcCCccceeecccccccCCCccEEeccCCC-CCCCCCCCcccccCCcccc
Q 038480 547 L-PSEISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLEQLISSFSDLRVLRMLDCG-FTADPVPEDSVLFGGSEIL 623 (850)
Q Consensus 547 l-p~~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~ 623 (850)
+ |..+..+++|++|++++|.+..+|.. +....+ +..|++.++. +.. ..
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---------------l~~l~l~~~~~i~~--------------l~ 145 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ---------------KVLLDIQDNINIHT--------------IE 145 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS---------------CEEEEEESCTTCCE--------------EC
T ss_pred cCchhhhhccccccccccccccccCCchhhcccch---------------hhhhhhcccccccc--------------cc
Confidence 7 45678999999999999999988753 222333 3444444332 111 00
Q ss_pred HHHhccC-CCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCccccccc
Q 038480 624 VEELINL-KHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVE 702 (850)
Q Consensus 624 ~~~L~~L-~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 702 (850)
...+..+ ..++.|+++.|.+..+... ....++|+.|.+.++..++.++...+..+++|+.|++++| .++.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~---~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l---- 217 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL---- 217 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTT---SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC----
T ss_pred ccchhhcchhhhhhccccccccCCChh---hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc----
Confidence 1112233 3466777777776654432 1123578888888777788887666788999999999988 56655
Q ss_pred ccCCCCCCCCCCccEEecccCCCCCCCcccccCCCCceEEeec
Q 038480 703 LRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIER 745 (850)
Q Consensus 703 ~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~ 745 (850)
+. +.+.+|+.|.+.++..++.+|.+..+++|+.+++++
T Consensus 218 ---p~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 218 ---PS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ---CS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ---Ch--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 22 248899999999888889999888999999998865
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.1e-15 Score=164.50 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=28.8
Q ss_pred CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc--cChhhccccCCCeEeecccccc
Q 038480 507 PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ--LPSEISKLVSLQYLNLSETSIK 568 (850)
Q Consensus 507 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~l~~L~~L~Ls~~~i~ 568 (850)
++++.|++.+|.+.+.++. +..+++|++|++++| .+.. +|..+..+++|++|++++|.+.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLS 131 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence 3455555555554444433 234555555555555 3321 4444455555555555555444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.3e-15 Score=167.21 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=87.2
Q ss_pred cccceEEEeecccccccc------cCCCCCCccceeecccccCCCC----chhh------hcCCCcceEEEccCCCCCcc
Q 038480 483 KWRDRRRISLLRNKIVAL------SETPTCPHLVTLFLAINKLDTI----TSNF------FDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l------~~~~~~~~L~~L~l~~n~l~~~----~~~~------~~~l~~L~~L~Ls~~~~i~~ 546 (850)
.++++++|++++|.+... ..+..+++|++|++++|.+..+ |..+ +..+++|++|+|++| .++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCH
Confidence 344555555555554432 1234455555555555433211 1111 245555555555555 3333
Q ss_pred -----cChhhccccCCCeEeecccccccc-cchhhc-CCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCC
Q 038480 547 -----LPSEISKLVSLQYLNLSETSIKEL-PNELKA-LTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGG 619 (850)
Q Consensus 547 -----lp~~i~~l~~L~~L~Ls~~~i~~L-P~~i~~-L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 619 (850)
+|..+..+++|++|+|++|.+... +..+.. +.++....+ -+..++|++|++.+|.+....
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~---~~~~~~L~~L~L~~n~l~~~~---------- 175 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK---AKNAPPLRSIICGRNRLENGS---------- 175 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH---HHTCCCCCEEECCSSCCTGGG----------
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh---cccCCCCcEEECCCCCCCcHH----------
Confidence 444555555555555555554311 111111 000000000 001167777777777643100
Q ss_pred ccccHHHhccCCCCCEEEEEeCchhh--hhhhhc-CCCccccceEEEeeecCCC----CccccccccCcCCcCeeeeccC
Q 038480 620 SEILVEELINLKHLDVLTVSLRSFCA--LQKLWS-SPKLQSSTKSLQLRECKDS----KSLNISYLADLKHLDKLDFAYC 692 (850)
Q Consensus 620 ~~~~~~~L~~L~~L~~L~l~~~~~~~--l~~l~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~ 692 (850)
.......+..+++|+.|+++.|.+.. +..+.. ....+++|+.|++++|... ..++ ..+..+++|+.|++++|
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCC
Confidence 01112356667777777777666542 212211 2233445666666655421 1122 23445555666666555
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3.2e-15 Score=160.88 Aligned_cols=220 Identities=20% Similarity=0.215 Sum_probs=129.8
Q ss_pred cceeecccccCCCCchhhhcCC--CcceEEEccCCCCCcccChhhccccCCCeEeeccccccc--ccchhhcCCccceee
Q 038480 509 LVTLFLAINKLDTITSNFFDFM--PSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKE--LPNELKALTNLKCWN 584 (850)
Q Consensus 509 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~--LP~~i~~L~~L~~L~ 584 (850)
++.++++++.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566677766554 4456667 89999999999 777766678889999999999998873 777676666666655
Q ss_pred cccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeC-chhh--hhhhhcCCCccccceE
Q 038480 585 LEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLR-SFCA--LQKLWSSPKLQSSTKS 661 (850)
Q Consensus 585 l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~-~~~~--l~~l~~~~~~~~~L~~ 661 (850)
++ +|.++ ...+..+..+++|+.|+++.| .++. +... ...+++|+.
T Consensus 125 L~---------------~~~l~--------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~ 172 (336)
T 2ast_B 125 LE---------------GLRLS--------------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDE 172 (336)
T ss_dssp CT---------------TCBCC--------------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCE
T ss_pred Cc---------------CcccC--------------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCE
Confidence 54 44321 112334445555555555544 2221 1111 112345666
Q ss_pred EEeeecCCCCccc-cccccCcC-CcCeeeeccCC-CCc--ccccccccCCCCCCCCCCccEEecccCCCCCC--Cccccc
Q 038480 662 LQLRECKDSKSLN-ISYLADLK-HLDKLDFAYCS-NLE--EFNYVELRTAREPYGFDSLQRVTIDCCKKLKE--VTWLAF 734 (850)
Q Consensus 662 L~l~~~~~~~~~~-~~~l~~~~-~L~~L~l~~~~-~l~--~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--l~~l~~ 734 (850)
|++++|..++... ...+..++ +|++|++++|. .+. .+ +.....+++|+.|++++|..++. ++.+..
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-------~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-------STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-------HHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-------HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 6666663344321 12345566 77777777763 222 11 00111467777777777754332 334667
Q ss_pred CCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccc
Q 038480 735 APNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDL 778 (850)
Q Consensus 735 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~ 778 (850)
+++|++|++++|..+..... ..+..+++|+.|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 77888888877753322110 13456778888888776
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.3e-14 Score=144.94 Aligned_cols=197 Identities=21% Similarity=0.250 Sum_probs=150.3
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEeecccccccccchhhcCCccceeecc
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
.+++++++++.++.+|..+ .++|+.|+|++| .+..+|. .++.+++|++|++++|.++.+|..+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~------------ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI------------ 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT------------
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhh------------
Confidence 5789999999999888653 267999999999 7887775 7899999999999999999887643
Q ss_pred cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeee
Q 038480 587 QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRE 666 (850)
Q Consensus 587 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 666 (850)
+..+++|++|++.+|.+... ....+.++++|+.|+++.|.+..+.. .....+++|+.|++++
T Consensus 81 --~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 81 --FKELKNLETLWVTDNKLQAL--------------PIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGY 142 (270)
T ss_dssp --TSSCTTCCEEECCSSCCCCC--------------CTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred --hcCCCCCCEEECCCCcCCcC--------------CHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCC
Confidence 24556667777777775542 12346778999999999888766542 1224457999999999
Q ss_pred cCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc--cccCCCCceEEee
Q 038480 667 CKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIE 744 (850)
Q Consensus 667 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~ 744 (850)
|. ++.++...+..+++|+.|++++| .+..++ +..+..+++|+.|++++| .+..++. +..+++|+.|+|+
T Consensus 143 n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 143 NE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVP------EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCC------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred Cc-CCccCHhHccCCcccceeEecCC-cCcEeC------hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEec
Confidence 86 55565456788999999999998 454441 222446899999999999 4556653 7789999999999
Q ss_pred ccc
Q 038480 745 RCY 747 (850)
Q Consensus 745 ~c~ 747 (850)
+|+
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=2.3e-15 Score=175.59 Aligned_cols=295 Identities=16% Similarity=0.159 Sum_probs=159.3
Q ss_pred cccceEEEeeccccccc-----ccCC-CCCCccceeecccccCCCCc----hhhhcCCCcceEEEccCCCCCcccChhhc
Q 038480 483 KWRDRRRISLLRNKIVA-----LSET-PTCPHLVTLFLAINKLDTIT----SNFFDFMPSLRVLNLSKNLSLKQLPSEIS 552 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~-----l~~~-~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~ 552 (850)
.++++++|++++|.+.. ++.+ ..+++|++|++++|. ..+. ..++..+++|++|++++|..++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 56778888888777544 2222 367788888888775 2222 22234568888888888766666777777
Q ss_pred cccCCCeEeeccc-------ccccccchhhcCCcccee-ecc--------cccccCCCccEEeccCCCCCCCCCCCcccc
Q 038480 553 KLVSLQYLNLSET-------SIKELPNELKALTNLKCW-NLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVL 616 (850)
Q Consensus 553 ~l~~L~~L~Ls~~-------~i~~LP~~i~~L~~L~~L-~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 616 (850)
.+++|++|+++.+ .+..++..+.++++|+.| .+. ..+..+++|++|++.+|.+..
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--------- 303 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS--------- 303 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH---------
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH---------
Confidence 8888888885443 344566667777777777 332 222356788888888776321
Q ss_pred cCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeee--------cCCCCc----------------
Q 038480 617 FGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRE--------CKDSKS---------------- 672 (850)
Q Consensus 617 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~--------~~~~~~---------------- 672 (850)
.....-+.++++|+.|+++.+ .. ...+......+++|+.|++.. |..++.
T Consensus 304 ----~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 304 ----YDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp ----HHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred ----HHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 112222456677777777654 21 111111111234566665532 111221
Q ss_pred ---------ccccccc-CcCCcCeeeec-----cCCCCcccccccccCCCCCCCCCCccEEecccCCCCCC--Cccccc-
Q 038480 673 ---------LNISYLA-DLKHLDKLDFA-----YCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKE--VTWLAF- 734 (850)
Q Consensus 673 ---------~~~~~l~-~~~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--l~~l~~- 734 (850)
.....+. .+++|+.|+++ +|..+...+..... ......+++|+.|++.+ .+.. ++.+..
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF-GAIVEHCKDLRRLSLSG--LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH-HHHHHHCTTCCEEECCS--SCCHHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH-HHHHhhCCCccEEeecC--cccHHHHHHHHHh
Confidence 1111111 24555555555 22233211000000 00011345666666654 2221 112333
Q ss_pred CCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccccc--CCCCCCCccEEeeccCCC
Q 038480 735 APNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW--NALSFPDLLELFVSECPK 804 (850)
Q Consensus 735 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~--~~~~~~~L~~L~i~~C~~ 804 (850)
+++|++|+|++|......+. .....+++|+.|+|++|+. ..... ....+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~-------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH-------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH-------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHH-------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 67777777777652221111 0124589999999999875 32221 234578999999999965
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=6.8e-14 Score=146.48 Aligned_cols=199 Identities=19% Similarity=0.196 Sum_probs=151.7
Q ss_pred CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeecccccccccchhhcCCccc
Q 038480 503 TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETSIKELPNELKALTNLK 581 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~ 581 (850)
+..++++++++++++.++.+|..+. ++|++|+|++| .++.+ |..+..+++|++|++++|.++.+|..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC--------
Confidence 3567889999999999988887643 68899999999 66665 56788999999999999998877642
Q ss_pred eeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceE
Q 038480 582 CWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKS 661 (850)
Q Consensus 582 ~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~ 661 (850)
+.+++|++|++.+|.+... +..+..+++|+.|+++.|.+..+.. .....+++|+.
T Consensus 74 --------~~l~~L~~L~Ls~N~l~~l---------------~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~l~~L~~ 128 (290)
T 1p9a_G 74 --------GTLPVLGTLDLSHNQLQSL---------------PLLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQE 128 (290)
T ss_dssp --------SCCTTCCEEECCSSCCSSC---------------CCCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCE
T ss_pred --------CCCCcCCEEECCCCcCCcC---------------chhhccCCCCCEEECCCCcCcccCH--HHHcCCCCCCE
Confidence 3556777788888876532 2245678999999999998776542 22344579999
Q ss_pred EEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc-ccccCCCCce
Q 038480 662 LQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT-WLAFAPNLKF 740 (850)
Q Consensus 662 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~l~~l~~L~~ 740 (850)
|++++|. ++.++...+..+++|+.|++++| .+..++ ...+..+++|+.|++++|. +..+| .+..+++|++
T Consensus 129 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~------~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 129 LYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELP------AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPF 199 (290)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCC------TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSE
T ss_pred EECCCCC-CCccChhhcccccCCCEEECCCC-cCCccC------HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCe
Confidence 9999987 55565556788999999999998 455441 1223468999999999994 55666 4777889999
Q ss_pred EEeeccc
Q 038480 741 VHIERCY 747 (850)
Q Consensus 741 L~L~~c~ 747 (850)
|+|++|+
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 9999865
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=3.7e-14 Score=148.61 Aligned_cols=171 Identities=25% Similarity=0.285 Sum_probs=119.0
Q ss_pred cccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCC
Q 038480 479 PEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQ 558 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~ 558 (850)
.....+++++.|++++|.+..++.+..+++|++|++++|.++++++ +..+++|++|++++| .+..+|. ++.+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCC
Confidence 3445678899999999999988888889999999999999988876 889999999999999 7888774 89999999
Q ss_pred eEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEE
Q 038480 559 YLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTV 638 (850)
Q Consensus 559 ~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 638 (850)
+|++++|.++.+| .+..+++|++|++ .+|.+.. +..+..+++|+.|++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l---------------~~n~l~~----------------~~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYL---------------GNNKITD----------------ITVLSRLTKLDTLSL 163 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEEC---------------CSSCCCC----------------CGGGGGCTTCSEEEC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEc---------------cCCcCCc----------------chhhccCCCCCEEEc
Confidence 9999999998874 4555555555554 4444321 123445555555555
Q ss_pred EeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccC
Q 038480 639 SLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYC 692 (850)
Q Consensus 639 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 692 (850)
+.|.+..+.. ...+++|+.|++++|. ++.++ .+..+++|+.|++++|
T Consensus 164 ~~N~l~~~~~----l~~l~~L~~L~L~~N~-i~~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 164 EDNQISDIVP----LAGLTKLQNLYLSKNH-ISDLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSSCCCCCGG----GTTCTTCCEEECCSSC-CCBCG--GGTTCTTCSEEEEEEE
T ss_pred cCCccccchh----hcCCCccCEEECCCCc-CCCCh--hhccCCCCCEEECcCC
Confidence 5555444332 1223455566665554 33332 2555666666666665
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=3.4e-15 Score=158.50 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCccEEecccCCCCCCCcccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccc
Q 038480 713 DSLQRVTIDCCKKLKEVTWLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDL 778 (850)
Q Consensus 713 ~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~ 778 (850)
++|++|++++|. ++.+|.. ..++|++|+|++| .++.++ ....+++|+.|+|+++
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~~-~~~~L~~L~Ls~N-~l~~~~---------~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPKG-LPAKLRVLDLSSN-RLNRAP---------QPDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSC-CCSCCSC-CCSCCSCEECCSC-CCCSCC---------CTTSCCCCSCEECSST
T ss_pred CcCCEEECCCCC-CCchhhh-hcCCCCEEECCCC-cCCCCc---------hhhhCCCccEEECcCC
Confidence 566666666663 3344421 1256666666664 333332 2345566666666664
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2.7e-14 Score=149.67 Aligned_cols=186 Identities=17% Similarity=0.315 Sum_probs=143.0
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETS 566 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~ 566 (850)
+.++.+..+.+..+.....+++|++|++++|.+..++. +..+++|++|++++| .+..++. ++.+++|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc
Confidence 33444555555555555678889999999999887754 788999999999999 8888876 8899999999999998
Q ss_pred cccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhh
Q 038480 567 IKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCAL 646 (850)
Q Consensus 567 i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l 646 (850)
++.+|. + ..+++|++|++.+|.+.. +..+..+++|+.|+++.|.+..+
T Consensus 102 l~~~~~-l---------------~~l~~L~~L~L~~n~i~~----------------~~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 102 VKDLSS-L---------------KDLKKLKSLSLEHNGISD----------------INGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp CCCGGG-G---------------TTCTTCCEEECTTSCCCC----------------CGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCChh-h---------------ccCCCCCEEECCCCcCCC----------------ChhhcCCCCCCEEEccCCcCCcc
Confidence 887653 3 456677778888887543 24578899999999999988776
Q ss_pred hhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCC
Q 038480 647 QKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCK 724 (850)
Q Consensus 647 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 724 (850)
..+ ..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++ ....+++|+.|++++|+
T Consensus 150 ~~l----~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N-~i~~l~--------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 TVL----SRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDLR--------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGG----GGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBCG--------GGTTCTTCSEEEEEEEE
T ss_pred hhh----ccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC-cCCCCh--------hhccCCCCCEEECcCCc
Confidence 432 345789999999987 444442 788999999999999 455441 13368999999999995
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3.6e-14 Score=163.22 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=41.6
Q ss_pred eecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccc
Q 038480 491 SLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKEL 570 (850)
Q Consensus 491 ~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~L 570 (850)
.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++| .+..+|. +..+++|++|+|++|.+..+
T Consensus 27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 27 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred hccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 3333444443334445556666666665555442 555666666666666 5555554 55566666666666655554
Q ss_pred c
Q 038480 571 P 571 (850)
Q Consensus 571 P 571 (850)
|
T Consensus 103 ~ 103 (605)
T 1m9s_A 103 S 103 (605)
T ss_dssp T
T ss_pred h
Confidence 3
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=7.4e-14 Score=160.65 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=123.1
Q ss_pred cccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCC
Q 038480 479 PEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQ 558 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~ 558 (850)
.....+.+++.|++.+|.+..++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|++| .+..+| .++.+++|+
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 3455678899999999999999888999999999999999988877 889999999999999 888877 689999999
Q ss_pred eEeecccccccccchhhcCCccceeecc-------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCC
Q 038480 559 YLNLSETSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLK 631 (850)
Q Consensus 559 ~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 631 (850)
+|+|++|.+..+| .+..|++|+.|+++ ..++.+++|+.|++.+|.+.+ ... +..++
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---------------~~~-l~~l~ 175 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---------------IVP-LAGLT 175 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC---------------CGG-GTTCT
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC---------------chh-hccCC
Confidence 9999999998875 57777777777776 345566666666666665432 111 55666
Q ss_pred CCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecC
Q 038480 632 HLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECK 668 (850)
Q Consensus 632 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 668 (850)
+|+.|+++.|.+..++.+ ..+++|+.|+|++|+
T Consensus 176 ~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSSCCCBCGGG----TTCTTCSEEECCSEE
T ss_pred CCCEEECcCCCCCCChHH----ccCCCCCEEEccCCc
Confidence 666666666655544322 223456666666554
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=8.9e-15 Score=160.56 Aligned_cols=233 Identities=13% Similarity=0.123 Sum_probs=116.8
Q ss_pred CCCCccceeecccccCCCCch----hhhcCCCcceEEEccCCCCCc----ccChhh-------ccccCCCeEeecccccc
Q 038480 504 PTCPHLVTLFLAINKLDTITS----NFFDFMPSLRVLNLSKNLSLK----QLPSEI-------SKLVSLQYLNLSETSIK 568 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~~~~i~----~lp~~i-------~~l~~L~~L~Ls~~~i~ 568 (850)
..+++|++|++++|.+..... ..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 456677777777776654322 22556777777777776 333 334333 56677777777777666
Q ss_pred c-----ccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC---------CCCC
Q 038480 569 E-----LPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL---------KHLD 634 (850)
Q Consensus 569 ~-----LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L---------~~L~ 634 (850)
. +|..+..+ ++|++|++.+|.++... .......+..+ ++|+
T Consensus 108 ~~~~~~l~~~l~~~---------------~~L~~L~L~~n~l~~~~----------~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 108 PTAQEPLIDFLSKH---------------TPLEHLYLHNNGLGPQA----------GAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp TTTHHHHHHHHHHC---------------TTCCEEECCSSCCHHHH----------HHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhC---------------CCCCEEECcCCCCCHHH----------HHHHHHHHHHHhhhhhcccCCCCc
Confidence 4 44444433 44455555555532100 00112223333 6777
Q ss_pred EEEEEeCchh--hhhhhhcCCCccccceEEEeeecCCCCcc-----ccccccCcCCcCeeeeccCCCC----cccccccc
Q 038480 635 VLTVSLRSFC--ALQKLWSSPKLQSSTKSLQLRECKDSKSL-----NISYLADLKHLDKLDFAYCSNL----EEFNYVEL 703 (850)
Q Consensus 635 ~L~l~~~~~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~l----~~l~~~~~ 703 (850)
.|+++.|.++ .++.+......+++|+.|++++|. ++.. ....+..+++|+.|++++|... ..+
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l----- 236 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----- 236 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-----
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-----
Confidence 7777766653 233222222233466666666664 2211 1013555666666666666321 111
Q ss_pred cCCCCCCCCCCccEEecccCCCCCCC-----c-cc--ccCCCCceEEeecccccc----eeccccccCCCCCC-CcCCCc
Q 038480 704 RTAREPYGFDSLQRVTIDCCKKLKEV-----T-WL--AFAPNLKFVHIERCYEMD----EIISVWKLGEVPGL-NPFAKL 770 (850)
Q Consensus 704 ~~~~~~~~l~~L~~L~L~~~~~l~~l-----~-~l--~~l~~L~~L~L~~c~~l~----~i~~~~~~~~~~~~-~~~~~L 770 (850)
+.....+++|++|+|++|. +... + .+ +.+++|++|+|++|..-. .++. .+ ..+|+|
T Consensus 237 --~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--------~l~~~l~~L 305 (386)
T 2ca6_A 237 --AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--------VIDEKMPDL 305 (386)
T ss_dssp --HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--------HHHHHCTTC
T ss_pred --HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--------HHHhcCCCc
Confidence 0111235666666666663 3222 1 12 225666666666654222 1322 22 345666
Q ss_pred cEeeccccc
Q 038480 771 QCLRLQDLS 779 (850)
Q Consensus 771 ~~L~L~~~~ 779 (850)
+.|++++|+
T Consensus 306 ~~L~l~~N~ 314 (386)
T 2ca6_A 306 LFLELNGNR 314 (386)
T ss_dssp CEEECTTSB
T ss_pred eEEEccCCc
Confidence 666666653
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=3.5e-14 Score=154.15 Aligned_cols=262 Identities=19% Similarity=0.170 Sum_probs=148.4
Q ss_pred Eeecccccccc-cCCCC-CCccceeecccccCCCCch----hhhcCCC-cceEEEccCCCCCccc-Chhhccc-----cC
Q 038480 490 ISLLRNKIVAL-SETPT-CPHLVTLFLAINKLDTITS----NFFDFMP-SLRVLNLSKNLSLKQL-PSEISKL-----VS 556 (850)
Q Consensus 490 L~l~~n~~~~l-~~~~~-~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~~~~i~~l-p~~i~~l-----~~ 556 (850)
+.++.|.+... |.+.. .++|++|++++|.++..+. ..|..++ +|++|+|++| .++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 45566666643 44433 4458888888888887776 6677788 8888888888 66544 5556554 88
Q ss_pred CCeEeeccccccccc-chhhcCCccceeecccccccC-CCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC-CCC
Q 038480 557 LQYLNLSETSIKELP-NELKALTNLKCWNLEQLISSF-SDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL-KHL 633 (850)
Q Consensus 557 L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~l~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L 633 (850)
|++|++++|.++..+ ..+.. .+..+ ++|++|++.+|.++... .......+..+ ++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~-----------~l~~~~~~L~~L~Ls~N~l~~~~----------~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVK-----------TLAAIPFTITVLDLGWNDFSSKS----------SSEFKQAFSNLPASI 140 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHH-----------HHHTSCTTCCEEECCSSCGGGSC----------HHHHHHHHTTSCTTC
T ss_pred ccEEECcCCcCChHHHHHHHH-----------HHHhCCCCccEEECcCCcCCcHH----------HHHHHHHHHhCCCce
Confidence 888888888887543 32322 12233 56677777777654311 11122234443 577
Q ss_pred CEEEEEeCchhhh--hhhhcCC-CccccceEEEeeecCCCCccccc----cccCc-CCcCeeeeccCCCCcccccccccC
Q 038480 634 DVLTVSLRSFCAL--QKLWSSP-KLQSSTKSLQLRECKDSKSLNIS----YLADL-KHLDKLDFAYCSNLEEFNYVELRT 705 (850)
Q Consensus 634 ~~L~l~~~~~~~l--~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~l~~l~~~~~~~ 705 (850)
+.|+++.|.+... ..+.... ...++|+.|++++|. ++..... .+..+ ++|+.|++++|. +........
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l-- 216 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAEL-- 216 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHH--
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHH--
Confidence 7777777765521 1111111 112378888888775 3322211 23344 488888888884 432100000
Q ss_pred CCCCCC-CCCccEEecccCCCCCCCcc------cccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccc
Q 038480 706 AREPYG-FDSLQRVTIDCCKKLKEVTW------LAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDL 778 (850)
Q Consensus 706 ~~~~~~-l~~L~~L~L~~~~~l~~l~~------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~ 778 (850)
+..... .++|++|+|++|. +...+. +..+++|++|++++|. +..+.......-...+..+++|+.|+++++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 000001 3588899998884 444332 3567889999998875 111111000000024567788888888876
Q ss_pred c
Q 038480 779 S 779 (850)
Q Consensus 779 ~ 779 (850)
+
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=8.3e-13 Score=135.29 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=80.0
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeecc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSE 564 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~ 564 (850)
..++++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++| .+..++ ..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC
Confidence 4567888888888876532 268999999999988888888889999999999999 666654 4578899999999999
Q ss_pred cccccccchhhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 565 TSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 565 ~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
|.++.+|... +..+++|++|++.+|.+.
T Consensus 93 n~l~~~~~~~--------------~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 93 NQLASLPLGV--------------FDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp SCCCCCCTTT--------------TTTCTTCCEEECCSSCCC
T ss_pred CcccccChhH--------------hcccCCCCEEEcCCCcCC
Confidence 9888776432 234556666666676654
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3.5e-13 Score=132.39 Aligned_cols=121 Identities=14% Similarity=0.211 Sum_probs=95.5
Q ss_pred ccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCc-ccChhhccccCCCeE
Q 038480 482 RKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLK-QLPSEISKLVSLQYL 560 (850)
Q Consensus 482 ~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~l~~L~~L 560 (850)
..++++++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .+. ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 567889999999999998888889999999999999876654 3889999999999999 665 478889999999999
Q ss_pred eeccccccc-ccchhhcCCccceeecc--------cccccCCCccEEeccCCCC
Q 038480 561 NLSETSIKE-LPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 561 ~Ls~~~i~~-LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~ 605 (850)
++++|.++. .|..++.+++|++|+++ ..+..+++|++|++.+|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCC
Confidence 999999984 67777777777666665 2234455555555555543
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=144.15 Aligned_cols=200 Identities=19% Similarity=0.143 Sum_probs=110.8
Q ss_pred ceEEEeecccccccc-c-CC--CCCCccceeecccccCCCCch----hhhcCCCcceEEEccCCCCCcccC-hhhccccC
Q 038480 486 DRRRISLLRNKIVAL-S-ET--PTCPHLVTLFLAINKLDTITS----NFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVS 556 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l-~-~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~ 556 (850)
++++|++++|.+... + .+ ..+++|++|++++|.+....+ ..+..+++|++|+|++| .+..+| ..++.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCC
Confidence 455556655555433 1 12 445556666666655543211 22334555666666655 333332 44555556
Q ss_pred CCeEeeccccccc---ccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHH-hccCCC
Q 038480 557 LQYLNLSETSIKE---LPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEE-LINLKH 632 (850)
Q Consensus 557 L~~L~Ls~~~i~~---LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~~ 632 (850)
|++|++++|++.. +|... .++.+++|++|++.+|.++. ....... +.++++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAAL-------------CPHKFPAIQNLALRNTGMET------------PTGVCAALAAAGVQ 225 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTS-------------CTTSSCCCCSCBCCSSCCCC------------HHHHHHHHHHHTCC
T ss_pred CCEEECCCCCCccchhhhHHH-------------hhhcCCCCCEEECCCCCCCc------------hHHHHHHHHhcCCC
Confidence 6666666655432 21111 12456677777777776532 0111122 467788
Q ss_pred CCEEEEEeCchhhh-hhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCC
Q 038480 633 LDVLTVSLRSFCAL-QKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYG 711 (850)
Q Consensus 633 L~~L~l~~~~~~~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 711 (850)
|+.|+++.|.+... +........+++|+.|++++|. ++.++. .+ .++|+.|++++| .+..+ +.+..
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~~--~~~L~~L~Ls~N-~l~~~--------~~~~~ 292 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK-GL--PAKLRVLDLSSN-RLNRA--------PQPDE 292 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS-CC--CSCCSCEECCSC-CCCSC--------CCTTS
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhh-hh--cCCCCEEECCCC-cCCCC--------chhhh
Confidence 88888887776554 1111111223588888888876 445552 23 278999999988 44433 11336
Q ss_pred CCCccEEecccCC
Q 038480 712 FDSLQRVTIDCCK 724 (850)
Q Consensus 712 l~~L~~L~L~~~~ 724 (850)
+++|+.|++++|+
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 8899999999885
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=6.9e-15 Score=171.51 Aligned_cols=294 Identities=16% Similarity=0.143 Sum_probs=179.0
Q ss_pred cccceEEEeecccc--cc--cccCC-CCCCccceeeccccc-CCCCchhhhcCCCcceEEEccCCC--------------
Q 038480 483 KWRDRRRISLLRNK--IV--ALSET-PTCPHLVTLFLAINK-LDTITSNFFDFMPSLRVLNLSKNL-------------- 542 (850)
Q Consensus 483 ~~~~l~~L~l~~n~--~~--~l~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~-------------- 542 (850)
.+++++.|+++++. +. .++.+ ..+++|++|++++|. +.+ .+..+..+++|+.|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 56789999998876 21 12111 357899999999883 333 34446677777777754431
Q ss_pred ----------------CCcccChhhccccCCCeEeeccccccc--ccchhhcCCccceeeccc---------ccccCCCc
Q 038480 543 ----------------SLKQLPSEISKLVSLQYLNLSETSIKE--LPNELKALTNLKCWNLEQ---------LISSFSDL 595 (850)
Q Consensus 543 ----------------~i~~lp~~i~~l~~L~~L~Ls~~~i~~--LP~~i~~L~~L~~L~l~~---------~i~~l~~L 595 (850)
....+|..+..+++|++|++++|.+.. ++..+..+++|++|++.. ....+++|
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCC
Confidence 112344444567889999999988662 444467889999998871 12358899
Q ss_pred cEEeccCCCCC----CCCCCCcccccCCccccHHHhc-cCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEee-----
Q 038480 596 RVLRMLDCGFT----ADPVPEDSVLFGGSEILVEELI-NLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLR----- 665 (850)
Q Consensus 596 ~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~~L~-~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~----- 665 (850)
++|++.+|... ...+ ....+..+. ++++|+.|.+..+.++.... ......+++|+.|+++
T Consensus 341 ~~L~L~~~~~~g~~~~~~l---------~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVAL---------TEQGLVSVSMGCPKLESVLYFCRQMTNAAL-ITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp CEEEEECSCTTCSSCSSCC---------CHHHHHHHHHHCTTCCEEEEEESCCCHHHH-HHHHHHCTTCCEEEEEESSTT
T ss_pred CEEEEecCcccccccCCCC---------CHHHHHHHHHhchhHHHHHHhcCCcCHHHH-HHHHhhCCCcceeEeecccCC
Confidence 99998654200 0000 112233333 48899999887776543211 1111224689999999
Q ss_pred ecCCCCcccc-----ccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCC--ccc-ccCCC
Q 038480 666 ECKDSKSLNI-----SYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEV--TWL-AFAPN 737 (850)
Q Consensus 666 ~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l--~~l-~~l~~ 737 (850)
+|..++..+. ..+..+++|+.|++++ .+... .+.. .. ..+++|+.|+|++|. +... ..+ ..+++
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~-~~~~--l~--~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK-VFEY--IG--TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS 482 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH-HHHH--HH--HHCTTCCEEEEESCC-SSHHHHHHHHHHCTT
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH-HHHH--HH--HhchhccEeeccCCC-CcHHHHHHHHhcCCC
Confidence 4555653322 1245678999999976 33321 0100 00 037899999999995 3322 223 56899
Q ss_pred CceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccC-CCCCCCccEEeeccC
Q 038480 738 LKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWN-ALSFPDLLELFVSEC 802 (850)
Q Consensus 738 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~i~~C 802 (850)
|++|+|++|........ .....+++|+.|++++|+....-... ...+|.|+...+...
T Consensus 483 L~~L~L~~n~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALL-------ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCEEEEESCSCCHHHHH-------HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCEEECcCCCCcHHHHH-------HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 99999999875222211 13456899999999999752211111 134677766555533
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.2e-12 Score=132.05 Aligned_cols=157 Identities=25% Similarity=0.335 Sum_probs=116.4
Q ss_pred cCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
.+..+...|.. -..+++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|+|++| .++.+|
T Consensus 22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 99 (251)
T 3m19_A 22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLP 99 (251)
T ss_dssp TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCC
T ss_pred CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccC
Confidence 34445444432 2368999999999998874 3688999999999999999999988999999999999999 777776
Q ss_pred h-hhccccCCCeEeecccccccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCccccc
Q 038480 549 S-EISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLF 617 (850)
Q Consensus 549 ~-~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 617 (850)
. .+..+++|++|++++|.++.+|.. +..+++|++|+++ ..++.+++|++|++.+|.+...
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------- 170 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV--------- 170 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---------
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc---------
Confidence 4 568999999999999999988865 4677777777765 2345566666666666654431
Q ss_pred CCccccHHHhccCCCCCEEEEEeCch
Q 038480 618 GGSEILVEELINLKHLDVLTVSLRSF 643 (850)
Q Consensus 618 ~~~~~~~~~L~~L~~L~~L~l~~~~~ 643 (850)
....+..+++|+.|+++.|.+
T Consensus 171 -----~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 -----PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -----CTTTTTTCTTCCEEECCSCCB
T ss_pred -----CHHHHhCCCCCCEEEeeCCce
Confidence 112344555666666655543
No 108
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=1.4e-11 Score=135.03 Aligned_cols=286 Identities=17% Similarity=0.098 Sum_probs=178.2
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCC---CCCCEEEEEEecCCCCHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTP---NDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.--.++|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5689999999999998853 4566899999999999999999998762100 11235688888888889999999
Q ss_pred HHHHhcC---CCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCccc----cccc---cccCCCC--CCCeEEEEecCchh
Q 038480 203 IGERIGS---FGNKSLEEKASDIFKILS--KKKFLLLLDDVWERID----LVKV---GVPFPTS--ENASKVVFTTRLVD 268 (850)
Q Consensus 203 i~~~l~~---~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~~---~~~l~~~--~~gs~iivTtR~~~ 268 (850)
++.+++. ....+..+....+.+.+. +++.+|||||++.... .+.+ ....... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 9999876 223345666777777773 5688999999975321 1111 1111111 34556777777553
Q ss_pred H--------hhhccCcceEeccCCChhhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHcC---CCchHH-HHHHhhhc
Q 038480 269 V--------CSLMGAQKKFKIECLRDKEAWELFLEKVGE--EPLVSHPDIPMLAQAMAKECA---GLPLAL-ITIGRAMG 334 (850)
Q Consensus 269 v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai-~~~~~~l~ 334 (850)
. ...+ ....+.+.+++.++...++.+.+.. .....++ +..+.+++.++ |.|..+ ..+..+..
T Consensus 179 ~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 179 FVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 1111 1147899999999999999987532 1112222 34677888887 999433 33322221
Q ss_pred -----C--CCCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhc-CCCCCcccCHHHHHHHHH-
Q 038480 335 -----S--KNTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCS-LFPEDYQISKIELIECWI- 405 (850)
Q Consensus 335 -----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~- 405 (850)
. .-+.+.+..+++.... ..+.-++..++. +.+..+...+ .+.....+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1256667666654321 235557788998 5666555444 332222444454433321
Q ss_pred -H--cCCCCCCCCccchhhHHHHHHHHHHhhhcccc
Q 038480 406 -G--EGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV 438 (850)
Q Consensus 406 -a--~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 438 (850)
+ .| . ..........+++.|...++++..
T Consensus 321 ~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 12 1 122345677889999999999873
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.1e-12 Score=135.02 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=88.5
Q ss_pred CcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCC
Q 038480 478 APEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSL 557 (850)
Q Consensus 478 ~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L 557 (850)
.+....+++++.|++++|.+..++.+..+++|++|++++|.++++++ +..+++|++|+|++| .++.+|.... ++|
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L 108 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACL 108 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSC
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--Ccc
Confidence 34456677888888888888888877888888888888888887776 788888888888888 7777775333 888
Q ss_pred CeEeecccccccccchhhcCCccceeecc-------cccccCCCccEEeccCCCC
Q 038480 558 QYLNLSETSIKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~ 605 (850)
++|++++|.++.+| .+..+++|++|+++ ..++.+++|++|++.+|.+
T Consensus 109 ~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 109 SRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCC
T ss_pred cEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcC
Confidence 88888888888775 46666666666554 2334455555555555543
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.3e-11 Score=133.27 Aligned_cols=286 Identities=13% Similarity=-0.037 Sum_probs=179.1
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccC----CCC-CCEEEEEEecCCC-CHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDT----PND-FDVVIWVVVSKDM-QLERI 199 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~~ 199 (850)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++..... ... ...++|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999887753 345689999999999999999999875111 011 3467888888777 88889
Q ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc---cccccccCCCCCCCeEEEEecCchhHhhh
Q 038480 200 QEKIGERIGS----FGNKSLEEKASDIFKILSKKKFLLLLDDVWERID---LVKVGVPFPTSENASKVVFTTRLVDVCSL 272 (850)
Q Consensus 200 ~~~i~~~l~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 272 (850)
+..++.++.. ....+..+....+.+.+..++.+|||||++.... .+.+...+.....+..||+||+.......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 9999988833 1233456677788888887777999999975321 11201111111167788888886532111
Q ss_pred c------cCcceEeccCCChhhHHHHHHHHhCC--CCCCCCCChHHHHHHHHHHcC---CCch-HHHHHHhhh--c---C
Q 038480 273 M------GAQKKFKIECLRDKEAWELFLEKVGE--EPLVSHPDIPMLAQAMAKECA---GLPL-ALITIGRAM--G---S 335 (850)
Q Consensus 273 ~------~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Pl-ai~~~~~~l--~---~ 335 (850)
+ .....+.+.+++.++..+++...+.. .....+ ++..+.+++.++ |.|. |+..+-.+. . .
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1 11238999999999999999987531 111122 345778888888 8887 333333322 2 1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcCCCCCCCC
Q 038480 336 KNTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEGFLNGFEG 415 (850)
Q Consensus 336 ~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~ 415 (850)
.-+.+.+..+++.... ..+.-++..|++ +.+..+..++....+-.+. +.....--..| . .
T Consensus 257 ~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~ 316 (384)
T 2qby_B 257 IIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----K 316 (384)
T ss_dssp CCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----C
T ss_pred ccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----C
Confidence 2366777776664422 345667788987 6676666566511101111 11111111112 1 1
Q ss_pred ccchhhHHHHHHHHHHhhhcccc
Q 038480 416 MGVYNQGYYVIGVLVQACLLEEV 438 (850)
Q Consensus 416 ~~~~~~~~~~~~~L~~~~ll~~~ 438 (850)
.........+++.|...+++...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12345677889999999999763
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1.2e-13 Score=150.05 Aligned_cols=237 Identities=17% Similarity=0.159 Sum_probs=134.6
Q ss_pred ccceEEEeeccccccccc------CCCCCC-ccceeecccccCCCCchhhhcCC-----CcceEEEccCCCCCcccC-hh
Q 038480 484 WRDRRRISLLRNKIVALS------ETPTCP-HLVTLFLAINKLDTITSNFFDFM-----PSLRVLNLSKNLSLKQLP-SE 550 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~------~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~~~~i~~lp-~~ 550 (850)
.+++++|++++|.+...+ .+..++ +|++|++++|.++......+..+ ++|++|+|++| .++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 345999999999998764 246777 89999999999988766656664 99999999999 676544 33
Q ss_pred ----hccc-cCCCeEeecccccccccc-hhhcCCccceeeccccccc-CCCccEEeccCCCCCCCCCCCcccccCCcccc
Q 038480 551 ----ISKL-VSLQYLNLSETSIKELPN-ELKALTNLKCWNLEQLISS-FSDLRVLRMLDCGFTADPVPEDSVLFGGSEIL 623 (850)
Q Consensus 551 ----i~~l-~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
+..+ ++|++|++++|.++..+. .+.. .+.. .++|++|++.+|.+.... ....
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-----------~l~~~~~~L~~L~Ls~N~l~~~~----------~~~l 158 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-----------AFSNLPASITSLNLRGNDLGIKS----------SDEL 158 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-----------HHTTSCTTCCEEECTTSCGGGSC----------HHHH
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-----------HHHhCCCceeEEEccCCcCCHHH----------HHHH
Confidence 3444 899999999999986653 2322 1122 135555555555543210 1112
Q ss_pred HHHhccCC-CCCEEEEEeCchhhhhh--hhcCCCcc-ccceEEEeeecCCCCcccc----ccccC-cCCcCeeeeccCCC
Q 038480 624 VEELINLK-HLDVLTVSLRSFCALQK--LWSSPKLQ-SSTKSLQLRECKDSKSLNI----SYLAD-LKHLDKLDFAYCSN 694 (850)
Q Consensus 624 ~~~L~~L~-~L~~L~l~~~~~~~l~~--l~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~ 694 (850)
...+..++ +|+.|+++.|.++.... +....... ++|+.|++++|. ++.... ..+.. .++|+.|++++|.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~- 236 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC- 236 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-
Confidence 23334443 66666666655433211 11111111 356666666665 222110 12222 3467777777763
Q ss_pred CcccccccccCCCCCCCCCCccEEecccCCCCCCCc---------ccccCCCCceEEeeccc
Q 038480 695 LEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT---------WLAFAPNLKFVHIERCY 747 (850)
Q Consensus 695 l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~---------~l~~l~~L~~L~L~~c~ 747 (850)
+........ ......+++|+.|++++|. +..++ .+..+++|+.|++++|.
T Consensus 237 l~~~~~~~l--~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENL--KLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHH--HHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHH--HHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 332200000 0111245677777777774 11111 13456667777777754
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=3.3e-13 Score=139.04 Aligned_cols=167 Identities=19% Similarity=0.261 Sum_probs=118.2
Q ss_pred cccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEee
Q 038480 483 KWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNL 562 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~L 562 (850)
.+.++..+++..+.+.+++.+..+++|++|++++|.++.++ .+..+++|++|+|++| .+..+|. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34566677777888887777778888999999988888776 3788889999999988 7888876 888889999999
Q ss_pred cccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCc
Q 038480 563 SETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRS 642 (850)
Q Consensus 563 s~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 642 (850)
++|+++.+|... . ++|++|++.+|.+.+ +..+..+++|+.|+++.|.
T Consensus 93 ~~N~l~~l~~~~----------------~-~~L~~L~L~~N~l~~----------------~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 93 NRNRLKNLNGIP----------------S-ACLSRLFLDNNELRD----------------TDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp CSSCCSCCTTCC----------------C-SSCCEEECCSSCCSB----------------SGGGTTCTTCCEEECTTSC
T ss_pred CCCccCCcCccc----------------c-CcccEEEccCCccCC----------------ChhhcCcccccEEECCCCc
Confidence 998888776421 1 556666666665432 2346667777777777766
Q ss_pred hhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCC
Q 038480 643 FCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCS 693 (850)
Q Consensus 643 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 693 (850)
+..+..+ ..+++|+.|++++|. +... ..+..+++|+.|++++|+
T Consensus 140 i~~~~~l----~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 140 LKSIVML----GFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBCGGG----GGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEE
T ss_pred CCCChHH----ccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCc
Confidence 6555322 234577777777765 3333 346677788888888773
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=2.8e-12 Score=145.75 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=101.1
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++| .++.+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 5667777777766665422 366777777777666555 23566677777776 5666665 444 6677777776
Q ss_pred ccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 566 SIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 566 ~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
+++.+|. . +++|+.|++.+|.++..+ . .++
T Consensus 131 ~l~~lp~---~---------------l~~L~~L~Ls~N~l~~lp----------------~--~l~-------------- 160 (571)
T 3cvr_A 131 QLTMLPE---L---------------PALLEYINADNNQLTMLP----------------E--LPT-------------- 160 (571)
T ss_dssp CCSCCCC---C---------------CTTCCEEECCSSCCSCCC----------------C--CCT--------------
T ss_pred cCCCCCC---c---------------CccccEEeCCCCccCcCC----------------C--cCC--------------
Confidence 6666654 2 234455555555533210 0 223
Q ss_pred hhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCC
Q 038480 646 LQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKK 725 (850)
Q Consensus 646 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 725 (850)
+|+.|++++|. ++.++. +. ++|+.|++++| .+..++. .. ..-....+.|+.|+|++| .
T Consensus 161 ------------~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~--~~-~~L~~~~~~L~~L~Ls~N-~ 218 (571)
T 3cvr_A 161 ------------SLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTN-LLESLPA--VP-VRNHHSEETEIFFRCREN-R 218 (571)
T ss_dssp ------------TCCEEECCSSC-CSCCCC--CC--TTCCEEECCSS-CCSSCCC--CC---------CCEEEECCSS-C
T ss_pred ------------CcCEEECCCCC-CCCcch--hh--CCCCEEECcCC-CCCchhh--HH-HhhhcccccceEEecCCC-c
Confidence 44555555544 233331 32 56666666666 3433311 00 000001223388888887 4
Q ss_pred CCCCcc-cccCCCCceEEeeccccccee
Q 038480 726 LKEVTW-LAFAPNLKFVHIERCYEMDEI 752 (850)
Q Consensus 726 l~~l~~-l~~l~~L~~L~L~~c~~l~~i 752 (850)
++.+|. +..+++|+.|+|++|.....+
T Consensus 219 l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 219 ITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 555653 667888888888876544443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.3e-12 Score=125.42 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=113.3
Q ss_pred EcCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCc-ccC
Q 038480 470 STGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLK-QLP 548 (850)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp 548 (850)
..+..+...+.+..+++++.|++++|.+..++.+..+++|++|++++|.++...+..+..+++|++|++++| .+. ..|
T Consensus 51 l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~ 129 (197)
T 4ezg_A 51 LANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSIL 129 (197)
T ss_dssp EESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGH
T ss_pred ccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhH
Confidence 344455555677888999999999999888888899999999999999998755556899999999999999 565 578
Q ss_pred hhhccccCCCeEeecccc-cccccchhhcCCccceeecc-------cccccCCCccEEeccCCCC
Q 038480 549 SEISKLVSLQYLNLSETS-IKELPNELKALTNLKCWNLE-------QLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 549 ~~i~~l~~L~~L~Ls~~~-i~~LP~~i~~L~~L~~L~l~-------~~i~~l~~L~~L~l~~~~~ 605 (850)
..++.+++|++|++++|. +..+| .+..+++|++|+++ ..+..+++|++|++.+|.+
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 889999999999999997 88887 79999999999998 3567778888888888764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=4.1e-12 Score=144.39 Aligned_cols=171 Identities=22% Similarity=0.253 Sum_probs=113.6
Q ss_pred EEEEcCCccccCcccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc
Q 038480 467 FLVSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 546 (850)
.+...+..+...|... .++++.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|+|++| .++.
T Consensus 63 ~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~~ 134 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLTM 134 (571)
T ss_dssp EEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCSC
T ss_pred EEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCCC
Confidence 3444444555454422 478999999999999988 668999999999999999877 444 9999999999 8888
Q ss_pred cChhhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHH
Q 038480 547 LPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEE 626 (850)
Q Consensus 547 lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
+|. .+++|++|++++|.++.+|. .+ ++|++|++.+|.+++.+ .
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l---------------~~L~~L~Ls~N~L~~lp---------------~- 177 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTMLPE---LP---------------TSLEVLSVRNNQLTFLP---------------E- 177 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC---CC---------------TTCCEEECCSSCCSCCC---------------C-
T ss_pred CCC---cCccccEEeCCCCccCcCCC---cC---------------CCcCEEECCCCCCCCcc---------------h-
Confidence 997 68999999999999998885 23 45566666666654310 0
Q ss_pred hccCCCCCEEEEEeCchhhhhhhhcCCCccccc-------eEEEeeecCCCCccccccccCcCCcCeeeeccC
Q 038480 627 LINLKHLDVLTVSLRSFCALQKLWSSPKLQSST-------KSLQLRECKDSKSLNISYLADLKHLDKLDFAYC 692 (850)
Q Consensus 627 L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 692 (850)
+. ++|+.|+++.|.++.++.+ ..+| +.|++++|. ++.+| ..+..+++|+.|++++|
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~~------~~~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPAV------PVRNHHSEETEIFFRCRENR-ITHIP-ENILSLDPTCTIILEDN 240 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCCC------C--------CCEEEECCSSC-CCCCC-GGGGGSCTTEEEECCSS
T ss_pred hh--CCCCEEECcCCCCCchhhH------HHhhhcccccceEEecCCCc-ceecC-HHHhcCCCCCEEEeeCC
Confidence 22 5666666666655443321 0133 555555554 33333 22333555555555555
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=6.3e-12 Score=126.56 Aligned_cols=101 Identities=31% Similarity=0.462 Sum_probs=63.9
Q ss_pred cceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEe
Q 038480 485 RDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLN 561 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~ 561 (850)
.+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 56666777776666652 2456666777777777666666666666677777777766 56555543 45666777777
Q ss_pred ecccccccccchhhcCCccceeecc
Q 038480 562 LSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 562 Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
+++|+++.+|..+..+++|++|+++
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALD 143 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECC
T ss_pred ccCCcccccCcccccCCCCCEEECC
Confidence 7777666666666555555444443
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=4.2e-12 Score=126.92 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=78.2
Q ss_pred EEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeeccccc
Q 038480 489 RISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSETSI 567 (850)
Q Consensus 489 ~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~~i 567 (850)
.++.+++.+..+|... .++|+.|++++|.++.+++..|..+++|++|+|++| .+..+ |..+..+++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4555555555554421 256666666666666666655666666666666666 45444 55666666666666666666
Q ss_pred ccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 568 KELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 568 ~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
+.+|.. +..+++|++|+++ ..+..+++|++|++.+|.+...+ ...+..+++|+.|+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--------------KGTFSPLRAIQTMH 158 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------TTTTTTCTTCCEEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--------------HHHHhCCCCCCEEE
Confidence 666554 3445555554443 22345556666666666644321 12344555666666
Q ss_pred EEeCc
Q 038480 638 VSLRS 642 (850)
Q Consensus 638 l~~~~ 642 (850)
++.|.
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 65554
No 118
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.6e-11 Score=134.59 Aligned_cols=288 Identities=14% Similarity=0.076 Sum_probs=173.6
Q ss_pred CcccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
..++||+.+++.+.+++.. .....+.|+|++|+||||||+.+++........-..++|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999873 456789999999999999999999876211000235788888777778888888888
Q ss_pred HhcCC---CCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc------ccccccccCCC-CCCCeEEEEecCchhHhhhc
Q 038480 206 RIGSF---GNKSLEEKASDIFKILS--KKKFLLLLDDVWERI------DLVKVGVPFPT-SENASKVVFTTRLVDVCSLM 273 (850)
Q Consensus 206 ~l~~~---~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~-~~~gs~iivTtR~~~v~~~~ 273 (850)
.++.. ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 77651 22345566667777665 458999999997532 12222111111 23356677788766442222
Q ss_pred c-------CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcC---CCchHHHHHHh-hhc-----C--
Q 038480 274 G-------AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECA---GLPLALITIGR-AMG-----S-- 335 (850)
Q Consensus 274 ~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~~~-~l~-----~-- 335 (850)
. ....+.+.+++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+.. +.. .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 1 115799999999999999988653111 011222556777888887 99985433322 211 1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCC-C-cccCHHHHHHHH--HHc--CC
Q 038480 336 KNTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPE-D-YQISKIELIECW--IGE--GF 409 (850)
Q Consensus 336 ~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w--~a~--g~ 409 (850)
.-+.+.++.+++... ...+.-.+..+|+ ..+..+..++..-+ + ..+....+.+.. +++ |
T Consensus 259 ~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 125566665554332 1245556778887 56666555553211 1 123333332221 111 2
Q ss_pred CCCCCCccchhhHHHHHHHHHHhhhccc
Q 038480 410 LNGFEGMGVYNQGYYVIGVLVQACLLEE 437 (850)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 437 (850)
+. .........+++.|...+++..
T Consensus 324 ~~----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VE----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CC----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CC----CCCHHHHHHHHHHHHhCCCEEE
Confidence 11 1122456778999999999965
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=8.1e-11 Score=129.09 Aligned_cols=287 Identities=14% Similarity=0.034 Sum_probs=179.5
Q ss_pred CcccchhHHHHHHHHHhcc----CCce--EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE----VQVG--IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKI 203 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 203 (850)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++.. .... --.++|+.++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 5689999999999998865 2334 89999999999999999999987 2211 2356788888888888999999
Q ss_pred HHHhcCC---CCCCHHHHHHHHHHHhc--cCcEEEEEcccCCc--cccccccccCCCC-C---CCeEEEEecCchhHhhh
Q 038480 204 GERIGSF---GNKSLEEKASDIFKILS--KKKFLLLLDDVWER--IDLVKVGVPFPTS-E---NASKVVFTTRLVDVCSL 272 (850)
Q Consensus 204 ~~~l~~~---~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~-~---~gs~iivTtR~~~v~~~ 272 (850)
+..++.. ...+..+....+.+.+. +++.+||||+++.. ..+..+...+... . .+..||+||++......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888752 23345666667766664 56889999999754 2233332222111 1 46678888876644322
Q ss_pred cc-------CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHc---------CCCchHHHHHHhh-hc-
Q 038480 273 MG-------AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKEC---------AGLPLALITIGRA-MG- 334 (850)
Q Consensus 273 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~~-l~- 334 (850)
+. ....+.+.+++.++..+++...+.... ....-.++..+.+++.+ +|.|..+..+... ..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 21 123699999999999999988763211 00112256678899999 7887655443332 11
Q ss_pred ----CC--CCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCC---CCcccCHHHHHHHHH
Q 038480 335 ----SK--NTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFP---EDYQISKIELIECWI 405 (850)
Q Consensus 335 ----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~ 405 (850)
.. -+.+....+...... ..+.-.+..|+. +.+.++..++.+. .+..+....+...+-
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 11 233333333332211 112234566777 6777776666543 221455555555443
Q ss_pred H----cCCCCCCCCccchhhHHHHHHHHHHhhhcccc
Q 038480 406 G----EGFLNGFEGMGVYNQGYYVIGVLVQACLLEEV 438 (850)
Q Consensus 406 a----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 438 (850)
. .|.. .-.......++++|...+++...
T Consensus 320 ~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 320 IVCEEYGER-----PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEe
Confidence 2 1211 11235567889999999999763
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=7.5e-12 Score=124.11 Aligned_cols=65 Identities=40% Similarity=0.592 Sum_probs=34.7
Q ss_pred CccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeecccccccccc
Q 038480 507 PHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSETSIKELPN 572 (850)
Q Consensus 507 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~~i~~LP~ 572 (850)
++|++|++++|.++.+++..|..+++|++|++++| .++.+|.. +..+++|++|++++|.++.+|.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 45555555555555555555555555555555555 44444432 3455555555555555555443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=1.3e-11 Score=123.25 Aligned_cols=134 Identities=24% Similarity=0.303 Sum_probs=114.2
Q ss_pred cCCccccCcccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
.+.++...|.. -..+++.|++++|.+..++ .+..+++|++|++++|.++.+.+..|.++++|++|+|++| .+..+|
T Consensus 19 ~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 96 (220)
T 2v9t_B 19 RGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELP 96 (220)
T ss_dssp TTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccC
Confidence 34445555432 2368999999999999885 4688999999999999999998888999999999999999 888888
Q ss_pred hh-hccccCCCeEeecccccccc-cchhhcCCccceeecc---------cccccCCCccEEeccCCCCC
Q 038480 549 SE-ISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 549 ~~-i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~ 606 (850)
.. +..+++|++|+|++|.++.+ |..+..+++|++|+++ ..+..+++|++|++.+|.+.
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 76 57899999999999999987 5678999999999998 34678899999999999754
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=9.5e-12 Score=124.34 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=87.1
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCc-hhhhcCCCcceEEEccCCCCCcccCh-hhccccCCCeEeeccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTIT-SNFFDFMPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSET 565 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~~ 565 (850)
+.+++++|.+..+|.. -.+.++.|++++|.++.++ ..+|..+++|++|+|++| .++.++. .++.+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 3667777777666542 2345677777777776663 345677777777777777 5665544 5677777777777777
Q ss_pred ccccccch-hhcCCccceeecc---------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCE
Q 038480 566 SIKELPNE-LKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDV 635 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 635 (850)
.++.+|.. +..+++|++|+++ ..+..+++|++|++.+|.+++. .+..+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~ 157 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--------------APGAFDTLHSLST 157 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------------CTTTTTTCTTCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------------CHHHhcCCCCCCE
Confidence 77766543 5566666666554 2345566666777776665431 1234555666666
Q ss_pred EEEEeCch
Q 038480 636 LTVSLRSF 643 (850)
Q Consensus 636 L~l~~~~~ 643 (850)
|+++.|.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 66665543
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=2.2e-11 Score=122.63 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=90.3
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeeccc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSET 565 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~ 565 (850)
.+.++.+++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 44688888888888753 3489999999999999998888999999999999999 88888754 688999999999999
Q ss_pred ccccccch-hhcCCccceeecc--------cccccCCCccEEeccCCCC
Q 038480 566 SIKELPNE-LKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~ 605 (850)
.++.+|.. +..+++|++|+++ ..+..+++|++|++.+|.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC
Confidence 99988765 4666666666654 2234444555555555543
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=9.6e-12 Score=134.70 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=81.2
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhc-CCCcceEEEccCCCCCcccC-hhhccccCCCeEeeccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFD-FMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSET 565 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~ 565 (850)
+.++++++.+..+|.. -.+.++.|++++|.++.+++..|. .+++|++|+|++| .+..+| ..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 4677777777777642 234578888888888777777676 7888888888888 666665 45777888888888888
Q ss_pred ccccccc-hhhcCCccceeecc---------cccccCCCccEEeccCCCCCC
Q 038480 566 SIKELPN-ELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 566 ~i~~LP~-~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
+++.+|. .+..+++|++|+++ ..+..+++|++|++.+|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 8877764 35566666666554 234555666666666666543
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=122.46 Aligned_cols=133 Identities=20% Similarity=0.274 Sum_probs=111.6
Q ss_pred CCccccCcccccccceEEEeecccccccccC---CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 472 GVQLSIAPEVRKWRDRRRISLLRNKIVALSE---TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
+..+...|. .-...++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++| .+..+|
T Consensus 20 ~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~ 97 (220)
T 2v70_A 20 NQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQ 97 (220)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccC
Confidence 334444443 223467899999999998832 578999999999999999999888999999999999999 777766
Q ss_pred h-hhccccCCCeEeecccccccc-cchhhcCCccceeecc---------cccccCCCccEEeccCCCCC
Q 038480 549 S-EISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE---------QLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 549 ~-~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------~~i~~l~~L~~L~l~~~~~~ 606 (850)
. .++.+++|++|++++|.++.+ |..+..+++|++|+++ ..+..+++|++|++.+|.+.
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5 588999999999999999977 6779999999999997 45678899999999999855
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=2.4e-11 Score=120.45 Aligned_cols=102 Identities=31% Similarity=0.448 Sum_probs=86.2
Q ss_pred ccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeE
Q 038480 484 WRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYL 560 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L 560 (850)
.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .++.+|.. ++.+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 4689999999999998855 578999999999999999999988999999999999999 78887764 6899999999
Q ss_pred eecccccccccch-hhcCCccceeecc
Q 038480 561 NLSETSIKELPNE-LKALTNLKCWNLE 586 (850)
Q Consensus 561 ~Ls~~~i~~LP~~-i~~L~~L~~L~l~ 586 (850)
++++|.++.+|.. +..+++|++|+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECC
Confidence 9999999988764 4555555544443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=1.2e-11 Score=117.97 Aligned_cols=99 Identities=28% Similarity=0.272 Sum_probs=77.4
Q ss_pred cceEEEeecccccc--cccCC-CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc-cChhhccccCCCeE
Q 038480 485 RDRRRISLLRNKIV--ALSET-PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ-LPSEISKLVSLQYL 560 (850)
Q Consensus 485 ~~l~~L~l~~n~~~--~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~l~~L~~L 560 (850)
+++++|++++|.+. .+|.. ..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 57889999999887 66654 7788999999999988877 44888999999999999 6665 77777779999999
Q ss_pred eeccccccccc--chhhcCCccceeecc
Q 038480 561 NLSETSIKELP--NELKALTNLKCWNLE 586 (850)
Q Consensus 561 ~Ls~~~i~~LP--~~i~~L~~L~~L~l~ 586 (850)
++++|.++.+| ..+..+++|++|+++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEee
Confidence 99999888876 455555555444443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=8.3e-12 Score=120.07 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=103.9
Q ss_pred cccccccceEEEeecccccccccCCCCCC-ccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhh-ccccC
Q 038480 479 PEVRKWRDRRRISLLRNKIVALSETPTCP-HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEI-SKLVS 556 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~l~~ 556 (850)
+....+.+++.|++++|.+..++.+..+. +|++|++++|.++.+ ..|..+++|++|++++| .+..+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 34455678999999999988887776655 899999999998877 34888999999999999 788887655 88999
Q ss_pred CCeEeecccccccccc--hhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC
Q 038480 557 LQYLNLSETSIKELPN--ELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD 634 (850)
Q Consensus 557 L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 634 (850)
|++|++++|.++.+|. .+. .+++|++|++.+|.+...+ ......+..+++|+
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~---------------~l~~L~~L~l~~N~i~~~~-----------~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLA---------------SLKSLTYLCILRNPVTNKK-----------HYRLYVIYKVPQVR 143 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGG---------------GCTTCCEEECCSSGGGGST-----------THHHHHHHHCTTCS
T ss_pred CCEEECCCCcCCcchhhHhhh---------------cCCCCCEEEecCCCCCCcH-----------hHHHHHHHHCCccc
Confidence 9999999999888875 343 4556666777777654311 11122477888888
Q ss_pred EEEEEeCchhhh
Q 038480 635 VLTVSLRSFCAL 646 (850)
Q Consensus 635 ~L~l~~~~~~~l 646 (850)
.|+++.+.....
T Consensus 144 ~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 144 VLDFQKVKLKER 155 (176)
T ss_dssp EETTEECCHHHH
T ss_pred eeCCCcCCHHHH
Confidence 888888876553
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.6e-13 Score=155.14 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=78.2
Q ss_pred cceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcccccCCC
Q 038480 658 STKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTWLAFAPN 737 (850)
Q Consensus 658 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~l~~l~~ 737 (850)
.|+.|++++|. ++.+| . +..+++|+.|++++| .+..+ |..++.+++|+.|+|++| .++.+|.++.+++
T Consensus 442 ~L~~L~Ls~n~-l~~lp-~-~~~l~~L~~L~Ls~N-~l~~l-------p~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLC-H-LEQLLLVTHLDLSHN-RLRAL-------PPALAALRCLEVLQASDN-ALENVDGVANLPR 509 (567)
T ss_dssp TCSEEECTTSC-CSSCC-C-GGGGTTCCEEECCSS-CCCCC-------CGGGGGCTTCCEEECCSS-CCCCCGGGTTCSS
T ss_pred CceEEEecCCC-CCCCc-C-ccccccCcEeecCcc-ccccc-------chhhhcCCCCCEEECCCC-CCCCCcccCCCCC
Confidence 46777777775 44454 2 777788888888877 34444 223346788888888887 4556777778888
Q ss_pred CceEEeeccccccee--ccccccCCCCCCCcCCCccEeeccccccccccccCC----CCCCCccEEe
Q 038480 738 LKFVHIERCYEMDEI--ISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNA----LSFPDLLELF 798 (850)
Q Consensus 738 L~~L~L~~c~~l~~i--~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~----~~~~~L~~L~ 798 (850)
|++|+|++| .++.+ |. .++.+++|+.|+|++++ +..++... ..+|+|+.|+
T Consensus 510 L~~L~Ls~N-~l~~~~~p~--------~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAIQ--------PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSS-CCCSSSTTG--------GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcEEECCCC-CCCCCCCcH--------HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 888888775 45554 33 56778888888888753 55444322 1266676664
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2.4e-11 Score=113.23 Aligned_cols=125 Identities=26% Similarity=0.261 Sum_probs=89.8
Q ss_pred cceEEEeecccccc--cccCC-CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc-cChhhccccCCCeE
Q 038480 485 RDRRRISLLRNKIV--ALSET-PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ-LPSEISKLVSLQYL 560 (850)
Q Consensus 485 ~~l~~L~l~~n~~~--~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~l~~L~~L 560 (850)
+++++|++++|.+. .+|.. ..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 57889999999887 56554 7789999999999988877 44888999999999999 6666 77777789999999
Q ss_pred eeccccccccc--chhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEE
Q 038480 561 NLSETSIKELP--NELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTV 638 (850)
Q Consensus 561 ~Ls~~~i~~LP--~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 638 (850)
++++|.++.+| ..++.+ ++|++|++.+|.+++.+ ......+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l---------------~~L~~L~l~~N~l~~~~-----------~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKL---------------ENLKSLDLFNCEVTNLN-----------DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGC---------------TTCCEEECTTCGGGGST-----------THHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhC---------------CCCCEEeCcCCcccchH-----------HHHHHHHHHCCCcccccC
Confidence 99999888765 445444 45555566666543210 001134666667766654
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=5.7e-11 Score=128.62 Aligned_cols=157 Identities=26% Similarity=0.318 Sum_probs=124.2
Q ss_pred cCCccccCcccccccceEEEeecccccccccC--CC-CCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TP-TCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL 547 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l 547 (850)
.+..+...|. .-...++.|++++|.+..++. +. .+++|++|++++|.++.+++..|..+++|++|+|++| .+..+
T Consensus 26 ~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~ 103 (361)
T 2xot_A 26 SKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTL 103 (361)
T ss_dssp CSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred CCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcC
Confidence 3444555543 223568999999999998854 34 8999999999999999999888999999999999999 78877
Q ss_pred Ch-hhccccCCCeEeecccccccc-cchhhcCCccceeecc---------ccc---ccCCCccEEeccCCCCCCCCCCCc
Q 038480 548 PS-EISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLE---------QLI---SSFSDLRVLRMLDCGFTADPVPED 613 (850)
Q Consensus 548 p~-~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------~~i---~~l~~L~~L~l~~~~~~~~~~~~~ 613 (850)
|. .+..+++|++|+|++|.|..+ |..+..+++|++|+++ ..+ ..+++|+.|++.+|.+...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----- 178 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL----- 178 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-----
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-----
Confidence 65 578999999999999999977 6789999999999998 112 5689999999999987642
Q ss_pred ccccCCccccHHHhccCCC--CCEEEEEeCch
Q 038480 614 SVLFGGSEILVEELINLKH--LDVLTVSLRSF 643 (850)
Q Consensus 614 ~~~~~~~~~~~~~L~~L~~--L~~L~l~~~~~ 643 (850)
....+..++. |+.|++..|.+
T Consensus 179 ---------~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 ---------PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ---------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred ---------CHHHhhhccHhhcceEEecCCCc
Confidence 2345566665 36778877654
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=4.5e-11 Score=114.92 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=99.1
Q ss_pred EEcCCccccCccccccc-ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc
Q 038480 469 VSTGVQLSIAPEVRKWR-DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL 547 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~-~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l 547 (850)
...+..+...+....+. +++.|++++|.+..++.+..+++|++|++++|.++.+++.+|..+++|++|++++| .++.+
T Consensus 25 ~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~ 103 (176)
T 1a9n_A 25 DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVEL 103 (176)
T ss_dssp ECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCG
T ss_pred EeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcc
Confidence 33444555555556655 99999999999999988899999999999999999998887899999999999999 88999
Q ss_pred Ch--hhccccCCCeEeecccccccccch----hhcCCccceeecc
Q 038480 548 PS--EISKLVSLQYLNLSETSIKELPNE----LKALTNLKCWNLE 586 (850)
Q Consensus 548 p~--~i~~l~~L~~L~Ls~~~i~~LP~~----i~~L~~L~~L~l~ 586 (850)
|. .++.+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 87 789999999999999999999875 6666666666554
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=2.3e-10 Score=116.43 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=114.8
Q ss_pred CcccchhHHHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh-
Q 038480 130 PTIVGLESTLDKVWRCFEEVQ-VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI- 207 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l- 207 (850)
..++||+..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.. .....+.. ..+... .. ...+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~---~~~~~~---~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVC---DN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS---SCCSCS---HH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC---CCCccc---HH-HHHHhccCC
Confidence 358999999999999997653 3588999999999999999999876 22111100 000000 00 00000000
Q ss_pred ----cC-CCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchhHh-h-hc
Q 038480 208 ----GS-FGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVDVC-S-LM 273 (850)
Q Consensus 208 ----~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~-~~ 273 (850)
.. .......+....+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 00 00001111112222221 356899999999653 33444433333334577888888754431 1 11
Q ss_pred cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhh
Q 038480 274 GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRA 332 (850)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 332 (850)
.....+.+.+++.+|..+++.+.+....... .++..+.|++.|+|.|..+..+...
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2236899999999999999998775432111 2456789999999999998776653
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=7.9e-11 Score=109.74 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=94.7
Q ss_pred ccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC--hhhccccCC
Q 038480 480 EVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP--SEISKLVSL 557 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~l~~L 557 (850)
.+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++| .++.+| ..++.+++|
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence 44678899999999999998888899999999999999998866677888999999999999 788765 789999999
Q ss_pred CeEeecccccccccc----hhhcCCccceeecc
Q 038480 558 QYLNLSETSIKELPN----ELKALTNLKCWNLE 586 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~----~i~~L~~L~~L~l~ 586 (850)
++|++++|.++.+|. .+..+++|++|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999998886 68889999988764
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=3.7e-10 Score=113.17 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=115.0
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ....-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 35799999999999999876555699999999999999999998751 11111223444444443333322222111110
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchhHh-h-hccCcceEeccCCC
Q 038480 210 FGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVDVC-S-LMGAQKKFKIECLR 285 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~-~~~~~~~~~l~~L~ 285 (850)
. ..-.+++.+||+||++.. .....+...+.....+.++|+||+..... . .......+.+.+++
T Consensus 96 ~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 96 A-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp C-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred c-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 0 001357889999999754 22333332222234567888888765321 1 11223478999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 286 DKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 286 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
.++...++.+.+....... .++..+.+++.++|.|..+..+.
T Consensus 163 ~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 163 KEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998774322111 24567889999999998654433
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.8e-10 Score=109.77 Aligned_cols=105 Identities=26% Similarity=0.345 Sum_probs=90.1
Q ss_pred ccccccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC--hhhccccCC
Q 038480 480 EVRKWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP--SEISKLVSL 557 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~l~~L 557 (850)
.+..+++++.|++++|.+..++.+..+++|++|++++|.+...++..+..+++|++|++++| .++.+| ..+..+++|
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECL 122 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCC
T ss_pred HHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCC
Confidence 34778999999999999998888899999999999999998866777888999999999999 888876 688999999
Q ss_pred CeEeecccccccccc----hhhcCCccceeec
Q 038480 558 QYLNLSETSIKELPN----ELKALTNLKCWNL 585 (850)
Q Consensus 558 ~~L~Ls~~~i~~LP~----~i~~L~~L~~L~l 585 (850)
++|++++|.+..+|. .+..+++|++|++
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 999999999998886 4555555544443
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.7e-10 Score=112.45 Aligned_cols=97 Identities=29% Similarity=0.413 Sum_probs=71.1
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchh-hhcCCCcceEEEccCCCCCccc-ChhhccccCCCeEeeccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSN-FFDFMPSLRVLNLSKNLSLKQL-PSEISKLVSLQYLNLSET 565 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~l~~L~~L~Ls~~ 565 (850)
+.+++++|.+..+|... ..+|++|++++|.+..+++. +|..+++|++|+|++| .++.+ |..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 56788888887776532 34888888888888877764 5788888888888888 66655 677888888888888888
Q ss_pred ccccccch-hhcCCccceeecc
Q 038480 566 SIKELPNE-LKALTNLKCWNLE 586 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~ 586 (850)
+++.+|.. +..+++|++|+++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECC
T ss_pred cCCccCHHHhcCCCCCCEEECC
Confidence 88876543 5555555555443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=5.8e-10 Score=107.20 Aligned_cols=94 Identities=30% Similarity=0.419 Sum_probs=63.2
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~~ 566 (850)
+.+++.++.+..+|. ...++|++|++++|.++.+++..|..+++|++|++++| .++.+|.. ++.+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 456666677666653 23467788888887777777776777788888888877 66666644 5677788888888887
Q ss_pred cccccch-hhcCCcccee
Q 038480 567 IKELPNE-LKALTNLKCW 583 (850)
Q Consensus 567 i~~LP~~-i~~L~~L~~L 583 (850)
++.+|.. +..+++|++|
T Consensus 88 l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CCCCCTTTTTTCTTCCEE
T ss_pred ccccCHHHhhCCcccCEE
Confidence 7776653 3334333333
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.1e-10 Score=131.09 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=79.8
Q ss_pred ceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccc
Q 038480 486 DRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSET 565 (850)
Q Consensus 486 ~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~ 565 (850)
.++.|++++|.++.+|.+..+++|++|++++|.++.+|.. |+.+++|++|+|++| .++.+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4788999999998888888889999999999998877664 888999999999999 788888 7888999999999999
Q ss_pred ccccc--cchhhcCCccceeec
Q 038480 566 SIKEL--PNELKALTNLKCWNL 585 (850)
Q Consensus 566 ~i~~L--P~~i~~L~~L~~L~l 585 (850)
.++.+ |..++.|++|++|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEe
Confidence 98877 777766555544443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=9.5e-10 Score=107.13 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=66.3
Q ss_pred EEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeecccc
Q 038480 488 RRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSETS 566 (850)
Q Consensus 488 ~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~~ 566 (850)
+.+++++|.+..+|.. -.++|++|++++|.++.++ ..|..+++|++|+|++| .++.++ ..+..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4577777777777653 2367888888888887777 45788888888888888 666665 457888888888888888
Q ss_pred cccccc-hhhcCCcccee
Q 038480 567 IKELPN-ELKALTNLKCW 583 (850)
Q Consensus 567 i~~LP~-~i~~L~~L~~L 583 (850)
++.+|. .+..+++|++|
T Consensus 90 l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCBCCTTTTTTCTTCCEE
T ss_pred cCEeCHHHhCCCCCCCEE
Confidence 887764 34444444333
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.00 E-value=7.2e-10 Score=108.02 Aligned_cols=119 Identities=27% Similarity=0.342 Sum_probs=93.9
Q ss_pred cCCccccCcccccccceEEEeecccccccccC---CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCccc
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSE---TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQL 547 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l 547 (850)
.+..+...|.. -..+++.|++++|.+..++. +..+++|++|++++|.++++++..|.++++|++|+|++| .+..+
T Consensus 16 s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 93 (192)
T 1w8a_A 16 TGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEI 93 (192)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEE
T ss_pred CCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCcc
Confidence 34444445431 23489999999999998854 678999999999999999998888999999999999999 77766
Q ss_pred Ch-hhccccCCCeEeecccccccc-cchhhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 548 PS-EISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 548 p~-~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
|. .+..+++|++|++++|+++.+ |..+.. +++|++|++.+|.+.
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEH---------------LNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEECTTSSTT---------------CTTCCEEECTTCCBC
T ss_pred CHHHhcCCCCCCEEECCCCcCCeeCHHHhhc---------------CCCCCEEEeCCCCcc
Confidence 54 588999999999999999966 544444 455666666777654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=106.47 Aligned_cols=118 Identities=26% Similarity=0.337 Sum_probs=95.0
Q ss_pred cCCccccCcccccccceEEEeeccccccccc-CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccCh
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALS-ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPS 549 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 549 (850)
.+..+...|.. -.++++.|++++|.+..+| .+..+++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.
T Consensus 18 ~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~ 95 (193)
T 2wfh_A 18 SNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPP 95 (193)
T ss_dssp TTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred CCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCH
Confidence 34445555532 2468999999999999885 5678999999999999999999988999999999999999 7777764
Q ss_pred -hhccccCCCeEeecccccccccch-hhcCCccceeecccccccCCCccEEeccCCCC
Q 038480 550 -EISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLEQLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 550 -~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~ 605 (850)
.+..+++|++|+|++|.++.+|.. +.. +++|+.|++.+|.+
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISVVPEGAFND---------------LSALSHLAIGANPL 138 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTT---------------CTTCCEEECCSSCE
T ss_pred HHhCCCCCCCEEECCCCCCCeeChhhhhc---------------CccccEEEeCCCCe
Confidence 689999999999999999988864 444 45555666666653
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=1.6e-09 Score=104.05 Aligned_cols=118 Identities=24% Similarity=0.401 Sum_probs=95.0
Q ss_pred CccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh
Q 038480 473 VQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 473 ~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
.++...|. ...+++++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++| .++.+|..
T Consensus 17 ~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 94 (177)
T 2o6r_A 17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG 94 (177)
T ss_dssp SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence 34444442 234689999999999988854 578999999999999999999988999999999999999 88887764
Q ss_pred -hccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 551 -ISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 551 -i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
++.+++|++|++++|.++.+|..+ +..+++|++|++.+|.+.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~--------------~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGI--------------FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTT--------------TTTCTTCCEEECCSSCBC
T ss_pred HhhCCcccCEEECcCCcceEeCHHH--------------hcCCcccCEEEecCCCee
Confidence 688999999999999999888653 234556666777777644
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=2.1e-09 Score=114.72 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=118.0
Q ss_pred CCchhhhcC--------CCcceEEEccCCCCCcccCh-hhccccCCCeEeecccccccccch-hhcCCccceeecccccc
Q 038480 521 TITSNFFDF--------MPSLRVLNLSKNLSLKQLPS-EISKLVSLQYLNLSETSIKELPNE-LKALTNLKCWNLEQLIS 590 (850)
Q Consensus 521 ~~~~~~~~~--------l~~L~~L~Ls~~~~i~~lp~-~i~~l~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~l~~~i~ 590 (850)
.++...|.+ |++|+.|+|.+ .++.++. .+..|++|+.|++++|.+..++.. +..+.++..+...
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~---- 156 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG---- 156 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT----
T ss_pred ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc----
Confidence 445566666 77777777776 3555543 466777777777777776666442 3333333333322
Q ss_pred cCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCC-EEEEEeCchhhhhhh-hcCCCccccceEEEeeecC
Q 038480 591 SFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLD-VLTVSLRSFCALQKL-WSSPKLQSSTKSLQLRECK 668 (850)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~L~l~~~~~~~l~~l-~~~~~~~~~L~~L~l~~~~ 668 (850)
...... .........+.++..|+ .+.+. ....++.. ....-...++..+.+.+.-
T Consensus 157 -----------~~~~~~----------~~~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l 213 (329)
T 3sb4_A 157 -----------SSDAYR----------FKNRWEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKL 213 (329)
T ss_dssp -----------CTHHHH----------TSTTTTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECC
T ss_pred -----------chhhhh----------ccccccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeee
Confidence 100000 00000001122333443 22222 11122211 1111122345555555432
Q ss_pred CCCccccccc-cCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc--cccCCCCc-eEEee
Q 038480 669 DSKSLNISYL-ADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLK-FVHIE 744 (850)
Q Consensus 669 ~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~-~L~L~ 744 (850)
.......+ ..+++|+.|++++| .+..++ ...+..+.+|+.|.+.++ +..++. +..+++|+ .|.+.
T Consensus 214 --~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~------~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 214 --DNADFKLIRDYMPNLVSLDISKT-NATTIP------DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp --CHHHHHHHHHHCTTCCEEECTTB-CCCEEC------TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred --cHHHHHHHHHhcCCCeEEECCCC-Ccceec------HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence 11111112 23677888888776 355441 223446778888888775 555543 66788888 88887
Q ss_pred cccccceeccccccCCCCCCCcCCCccEeecccccccccccc-CCCCCCCccEEe
Q 038480 745 RCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-NALSFPDLLELF 798 (850)
Q Consensus 745 ~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~ 798 (850)
+ .++.|.. ..+..+++|+.+.+.+ .+++.++. .+..+++|+.++
T Consensus 283 ~--~l~~I~~-------~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 283 A--SVTAIEF-------GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T--TCCEECT-------TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred c--cceEEch-------hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 6 5677755 3667788888888865 35666665 345566666664
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=7.6e-10 Score=130.63 Aligned_cols=81 Identities=32% Similarity=0.366 Sum_probs=37.6
Q ss_pred CCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCcccee
Q 038480 504 PTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCW 583 (850)
Q Consensus 504 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L 583 (850)
..+++|++|+|++|.+..++..++ .+++|++|+|++| .+..+|..++.|++|++|+|++|.|+.+|..++.|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 334444445554444444444322 4444555555444 44444444444445555555554444444444444444444
Q ss_pred ecc
Q 038480 584 NLE 586 (850)
Q Consensus 584 ~l~ 586 (850)
+++
T Consensus 299 ~L~ 301 (727)
T 4b8c_D 299 YFF 301 (727)
T ss_dssp ECC
T ss_pred ECC
Confidence 443
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=7.5e-10 Score=130.68 Aligned_cols=105 Identities=27% Similarity=0.389 Sum_probs=94.3
Q ss_pred ccccccceEEEeeccccccccc-CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCC
Q 038480 480 EVRKWRDRRRISLLRNKIVALS-ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQ 558 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~ 558 (850)
.+..+..++.|++++|.+..++ .+..+++|++|+|++|.++.+|.. |..+++|++|+|++| .+..+|..++.|++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence 4566789999999999998885 457899999999999999977765 799999999999999 8889999999999999
Q ss_pred eEeecccccccccchhhcCCccceeecc
Q 038480 559 YLNLSETSIKELPNELKALTNLKCWNLE 586 (850)
Q Consensus 559 ~L~Ls~~~i~~LP~~i~~L~~L~~L~l~ 586 (850)
+|+|++|.|+.+|..|+.|++|++|+++
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCC
Confidence 9999999999999999999999999997
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.5e-09 Score=103.68 Aligned_cols=103 Identities=17% Similarity=0.366 Sum_probs=84.2
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeeccc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSET 565 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~ 565 (850)
.+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 367889999998887633 389999999999999998888999999999999999 88888876 578999999999999
Q ss_pred ccccccch-hhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 566 SIKELPNE-LKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
+|+.+|.. +.. +++|++|++.+|.+.
T Consensus 92 ~l~~l~~~~~~~---------------l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDN---------------LKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTT---------------CTTCSEEECCSSCBC
T ss_pred ccceeCHHHhcc---------------ccCCCEEEeCCCCcc
Confidence 99988864 444 455566666676644
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=2.3e-09 Score=114.12 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=113.7
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ..++++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 45799999999999999876655599999999999999999998751 1111 12344444433232222 22222111
Q ss_pred CCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchhH-hhh-ccCcceEeccC
Q 038480 209 SFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVDV-CSL-MGAQKKFKIEC 283 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~~~l~~ 283 (850)
.. ...+ .+++.++|+||++.. ..+..+...+.....++.+|+||+...- ... ......+.+.+
T Consensus 98 ~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 98 QK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp HB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hc------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 00 0011 356889999999753 2333333333223356778887765432 111 12235899999
Q ss_pred CChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchH-HHHHHh
Q 038480 284 LRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLA-LITIGR 331 (850)
Q Consensus 284 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla-i~~~~~ 331 (850)
++.++...++...+....... .++....|++.++|.|.. +..+..
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999988764322111 145678899999999955 444433
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=3.2e-11 Score=118.46 Aligned_cols=111 Identities=25% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccce
Q 038480 503 TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKC 582 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~ 582 (850)
+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+..++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~---- 115 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV---- 115 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH----
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC----
Confidence 345666666666666666654 3566666666666666 56666665566666666666666666655 344444
Q ss_pred eecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 583 WNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 583 L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
+|++|++.+|.+.. ...+..+..+++|+.|+++.|.+..
T Consensus 116 -----------~L~~L~l~~N~i~~-------------~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 -----------NLRVLYMSNNKITN-------------WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -----------HSSEEEESEEECCC-------------HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -----------CCCEEECCCCcCCc-------------hhHHHHHhcCCCCCEEEecCCcccc
Confidence 44555555554331 1112356666666666666665543
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=1.1e-08 Score=108.97 Aligned_cols=271 Identities=15% Similarity=0.069 Sum_probs=146.1
Q ss_pred CcccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..++|++..++.+..++.. .....+.|+|++|+|||++|+.+++.. ... .+++.++......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHH--
Confidence 4589999999988887752 234678899999999999999999876 222 344544433222222111
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccC--------CC----------CCCCeEEEEec
Q 038480 205 ERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPF--------PT----------SENASKVVFTT 264 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l--------~~----------~~~gs~iivTt 264 (850)
+... ..++.+|++||++... ....+...+ .. ...+..+|.||
T Consensus 84 -----------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 84 -----------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -----------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -----------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1110 1355688999996532 111110000 00 01234566666
Q ss_pred Cchh-Hhhhc-c-CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcC------
Q 038480 265 RLVD-VCSLM-G-AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGS------ 335 (850)
Q Consensus 265 R~~~-v~~~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~------ 335 (850)
.... +...+ . ....+.+.+++.+|...++.+.+....... ..+..+.+++.++|.|..+..+...+..
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 5332 21111 1 125789999999999999988875433222 2466788999999999888766554321
Q ss_pred C--CCHHHHHHHHHHHhhccCCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHH----HHHHcCC
Q 038480 336 K--NTPEEWRYAIEMLRRSASEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIE----CWIGEGF 409 (850)
Q Consensus 336 ~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~----~w~a~g~ 409 (850)
. -+.+....++..+..........+..+...+.-.|..-+. ....+-..+++ ++..+.+ +-+..|+
T Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~~~~i~~~l 294 (324)
T 1hqc_A 223 EEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHEPYLIRQGL 294 (324)
T ss_dssp CSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHhHHHHHhcc
Confidence 1 2445555544443211111111111222222223322222 13333333333 3333222 3456789
Q ss_pred CCCCC-CccchhhHHHHHH-HHHHhhhccc
Q 038480 410 LNGFE-GMGVYNQGYYVIG-VLVQACLLEE 437 (850)
Q Consensus 410 i~~~~-~~~~~~~~~~~~~-~L~~~~ll~~ 437 (850)
+.... +....+.|+.|++ ++.+|+|+|+
T Consensus 295 i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 295 LKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp EEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 87554 6778899999998 8999999885
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=2e-09 Score=102.47 Aligned_cols=103 Identities=20% Similarity=0.376 Sum_probs=84.3
Q ss_pred eEEEeecccccccccCCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeeccc
Q 038480 487 RRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSET 565 (850)
Q Consensus 487 l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~ 565 (850)
.+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 467899999998887533 489999999999999998888999999999999999 88888765 588999999999999
Q ss_pred ccccccch-hhcCCccceeecccccccCCCccEEeccCCCCC
Q 038480 566 SIKELPNE-LKALTNLKCWNLEQLISSFSDLRVLRMLDCGFT 606 (850)
Q Consensus 566 ~i~~LP~~-i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~ 606 (850)
+++.+|.. +. .+++|++|++.+|.+.
T Consensus 89 ~l~~~~~~~~~---------------~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFD---------------NLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTT---------------TCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhc---------------CCCCCCEEEeCCCCCC
Confidence 99988764 44 4455566666777644
No 152
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.89 E-value=7.1e-09 Score=90.18 Aligned_cols=66 Identities=8% Similarity=0.102 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHhhHHhhhc
Q 038480 9 EENLASLQTQLQKLIEAKNDVVVRVANAEQQQ-MRRLNKVQGWISRVGSVEAEVGELIRKSSEEIDK 74 (850)
Q Consensus 9 ~~~~~~l~~~l~~L~~~l~~i~~~~~~a~~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~ 74 (850)
..-+..++++++.|+.+|..|++++.+|+.+. ...+++++.|+++||+++||+||++|+|.++...
T Consensus 18 ~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 18 FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566788889999999999999999998873 2345889999999999999999999999988753
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=2.5e-10 Score=112.03 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=95.3
Q ss_pred hhcCCCcceEEEccCCCCCcccChhhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCccEEeccCCCC
Q 038480 526 FFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGF 605 (850)
Q Consensus 526 ~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~ 605 (850)
.|..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++ |++|++.+|.+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~---------------L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT---------------LEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH---------------CSEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCc---------------CCEEECcCCcC
Confidence 5889999999999999 888898 899999999999999999998876665544 55566666664
Q ss_pred CCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccc---------cc
Q 038480 606 TADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLN---------IS 676 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~---------~~ 676 (850)
.+ ++.+..+++|+.|+++.|.+..+..+.. ...+++|+.|++++|+.....+ ..
T Consensus 106 ~~----------------l~~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 106 AS----------------LSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp CC----------------HHHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred Cc----------------CCccccCCCCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 32 3467888999999999998876654221 2235689999999886322211 11
Q ss_pred cccCcCCcCeee
Q 038480 677 YLADLKHLDKLD 688 (850)
Q Consensus 677 ~l~~~~~L~~L~ 688 (850)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 245667777776
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=4.6e-09 Score=100.32 Aligned_cols=108 Identities=26% Similarity=0.340 Sum_probs=90.2
Q ss_pred EEcCCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcc
Q 038480 469 VSTGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQ 546 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 546 (850)
...+..+...|.. -..+++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+..
T Consensus 18 ~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~ 95 (174)
T 2r9u_A 18 NCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKS 95 (174)
T ss_dssp ECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred EeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccce
Confidence 3344455555542 23789999999999998843 688999999999999999999988999999999999999 8888
Q ss_pred cChh-hccccCCCeEeecccccccccchhhcCC
Q 038480 547 LPSE-ISKLVSLQYLNLSETSIKELPNELKALT 578 (850)
Q Consensus 547 lp~~-i~~l~~L~~L~Ls~~~i~~LP~~i~~L~ 578 (850)
+|.. +..+++|++|++++|.+...|..+..|.
T Consensus 96 l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 96 IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred eCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 8875 8899999999999999998877665544
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=1.4e-08 Score=108.19 Aligned_cols=245 Identities=11% Similarity=0.122 Sum_probs=154.5
Q ss_pred ccceEEEeecccccc--------------------ccc--CCCC--------CCccceeecccccCCCCchhhhcCCCcc
Q 038480 484 WRDRRRISLLRNKIV--------------------ALS--ETPT--------CPHLVTLFLAINKLDTITSNFFDFMPSL 533 (850)
Q Consensus 484 ~~~l~~L~l~~n~~~--------------------~l~--~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L 533 (850)
+++++.|++++|.+. .++ .|.+ |++|+.|.+.+ .++.+++..|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 457888888888877 222 2456 99999999999 8999999999999999
Q ss_pred eEEEccCCCCCcccC-hhhccccCCCeEeecccccccccchhhcCCccceeecccccccCCCcc-EEeccCCCCCCCCCC
Q 038480 534 RVLNLSKNLSLKQLP-SEISKLVSLQYLNLSETSIKELPNELKALTNLKCWNLEQLISSFSDLR-VLRMLDCGFTADPVP 611 (850)
Q Consensus 534 ~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~-~L~l~~~~~~~~~~~ 611 (850)
+.|++++| .+..++ ..+..+.++.++.+..+..-. ....+.. ..+..+.+|+ .+.+......
T Consensus 127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~------~~~~i~~----~~f~~~~~L~~~i~~~~~~~l----- 190 (329)
T 3sb4_A 127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYR------FKNRWEH----FAFIEGEPLETTIQVGAMGKL----- 190 (329)
T ss_dssp CEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHH------TSTTTTT----SCEEESCCCEEEEEECTTCCH-----
T ss_pred ceEEcCCC-CccccchhhhcCCCceEEecCcchhhhh------ccccccc----cccccccccceeEEecCCCcH-----
Confidence 99999999 666655 456666666666655431100 0000000 1122334444 2333221100
Q ss_pred CcccccCCccccHHHhccCCCCCEEEEEeCchhh-hhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeec
Q 038480 612 EDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA-LQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFA 690 (850)
Q Consensus 612 ~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~-l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 690 (850)
..........+.++..+.+...-... ...+. ..+++|+.+++.+|. ++.++...+..+++|++|++.
T Consensus 191 --------~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~---~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 191 --------EDEIMKAGLQPRDINFLTIEGKLDNADFKLIR---DYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp --------HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH---HHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECC
T ss_pred --------HHHHhhcccCccccceEEEeeeecHHHHHHHH---HhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECC
Confidence 00011111234556666665432111 11111 124689999998776 667776778899999999998
Q ss_pred cCCCCcccccccccCCCCCCCCCCcc-EEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcC
Q 038480 691 YCSNLEEFNYVELRTAREPYGFDSLQ-RVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPF 767 (850)
Q Consensus 691 ~~~~l~~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 767 (850)
++ +..++ ...+..+.+|+ .|.+.+ .++.++ .+..+++|+.|++++ +.++.+.. ..+..+
T Consensus 259 ~n--i~~I~------~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~-------~aF~~~ 320 (329)
T 3sb4_A 259 HN--LKTIG------QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGD-------ELFGNG 320 (329)
T ss_dssp TT--CCEEC------TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECT-------TTTCTT
T ss_pred cc--cceeh------HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccch-------hhhcCC
Confidence 86 65551 23345788899 999987 455555 377899999999977 56888866 367778
Q ss_pred CCccEeec
Q 038480 768 AKLQCLRL 775 (850)
Q Consensus 768 ~~L~~L~L 775 (850)
++|+.+..
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 89988763
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=3.4e-07 Score=99.79 Aligned_cols=234 Identities=13% Similarity=0.135 Sum_probs=136.9
Q ss_pred cceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEe
Q 038480 485 RDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLN 561 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~ 561 (850)
..+..+.+.+ .+..++ .|.+| +|+.+.+..+ ++.+....|.++ +|+.+.+.++ +..++ ..+..|.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeee
Confidence 3444455442 344442 34555 6888888766 777777778875 6888888763 55554 4677888899999
Q ss_pred ecccccccccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeC
Q 038480 562 LSETSIKELPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLR 641 (850)
Q Consensus 562 Ls~~~i~~LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 641 (850)
+++|+++.+|...-...+|+.+.+. .+ + .......+.++++|+.+.+..+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp---------------~~-l--------------~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLP---------------VT-L--------------KEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECC---------------TT-C--------------CEECTTTTTTCTTCCCEECCTT
T ss_pred cCCCcceEechhhEeecccCEEEeC---------------Cc-h--------------heehhhHhhCCCCCCEEecCCC
Confidence 9888888887765445666666554 11 0 0001122334444444444321
Q ss_pred chhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCC----cccccccccCCCCCCCCCCccE
Q 038480 642 SFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNL----EEFNYVELRTAREPYGFDSLQR 717 (850)
Q Consensus 642 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l----~~l~~~~~~~~~~~~~l~~L~~ 717 (850)
+..+..-.. . ..+|+.+.+.+ .++.++...+..+++|+.+.+.++... ..+ ....+..+++|+.
T Consensus 237 -l~~I~~~aF--~-~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I------~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 237 -VSTIGQEAF--R-ESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI------HPYCLEGCPKLAR 304 (401)
T ss_dssp -CCEECTTTT--T-TCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE------CTTTTTTCTTCCE
T ss_pred -ccCcccccc--c-cCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEE------CHHHhhCCccCCe
Confidence 111111100 1 13566666632 244454456777888888888765321 112 1223446778888
Q ss_pred EecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccc
Q 038480 718 VTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDL 778 (850)
Q Consensus 718 L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~ 778 (850)
+.+.+ .+..++ .+..+++|+.|.|.. .++.+.. ..+..+ +|+.+.+.++
T Consensus 305 l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~-------~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 305 FEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINF-------SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECT-------TSSSSS-CCCEEEECCS
T ss_pred EEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcH-------HhCCCC-CCCEEEEcCC
Confidence 88874 355554 266788888888854 3666654 256667 8888888874
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=2e-08 Score=95.44 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=85.7
Q ss_pred cCCccccCcccccccceEEEeecccccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccC
Q 038480 471 TGVQLSIAPEVRKWRDRRRISLLRNKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP 548 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~L~l~~n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 548 (850)
.+..+...|.. -.++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+|
T Consensus 17 s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 17 SGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeC
Confidence 34445555432 24789999999999998843 688999999999999999999998999999999999999 888887
Q ss_pred h-hhccccCCCeEeecccccccccchhh
Q 038480 549 S-EISKLVSLQYLNLSETSIKELPNELK 575 (850)
Q Consensus 549 ~-~i~~l~~L~~L~Ls~~~i~~LP~~i~ 575 (850)
. .+..+++|++|+|++|.+...+..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred HHHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 6 48899999999999999886655433
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=1.5e-08 Score=108.04 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=112.5
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+.......+. ..+..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 101 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFA 101 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTH-HHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHH-HHHHHHH
Confidence 35799999999999999887666699999999999999999998751 1111 123334333221111111 1110000
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchhH-hhhc-cCcceEeccCC
Q 038480 209 SFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVDV-CSLM-GAQKKFKIECL 284 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~~~~~l~~L 284 (850)
. ......+++.++|+||++.. ..+..+...+.....++++|+||..... ...+ .....+.+.++
T Consensus 102 ~------------~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l 169 (327)
T 1iqp_A 102 R------------TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 169 (327)
T ss_dssp H------------SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCC
T ss_pred h------------hCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCC
Confidence 0 00011256889999999753 2333333223223456788888865432 1111 12247899999
Q ss_pred ChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHh
Q 038480 285 RDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGR 331 (850)
Q Consensus 285 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 331 (850)
+.++...++...+....... .++..+.|++.++|.|..+..+..
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999988775433211 245678899999999987655444
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=3.8e-07 Score=99.39 Aligned_cols=238 Identities=11% Similarity=0.180 Sum_probs=141.7
Q ss_pred cccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCC
Q 038480 481 VRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQ 558 (850)
Q Consensus 481 ~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~ 558 (850)
+.++ +++.+.+..+ +..++ .|.+| +|+.+.+.. .++.+....|.+|++|+.++|++| .+..+|.......+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccC
Confidence 3343 6888888755 66663 34554 699999986 688888888999999999999999 8898887666678999
Q ss_pred eEeecccccccccc-hhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 559 YLNLSETSIKELPN-ELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 559 ~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
.+.+..+ ++.++. .+..+++|+.+++... ++.+. ...+.+ .+|+.+.
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~------l~~I~------------------------~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN------VSTIG------------------------QEAFRE-SGITTVK 254 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT------CCEEC------------------------TTTTTT-CCCSEEE
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC------ccCcc------------------------cccccc-CCccEEE
Confidence 9999854 676654 4667777777776511 11110 011112 2344444
Q ss_pred EEeCchhhhhhhhcCCCccccceEEEeeecCC----CCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCC
Q 038480 638 VSLRSFCALQKLWSSPKLQSSTKSLQLRECKD----SKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFD 713 (850)
Q Consensus 638 l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~ 713 (850)
+. +++..+.. .....+++|+.+.+.++.. ...++...+..+++|+.+.+.. .+..+. ...+..+.
T Consensus 255 lp-~~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~------~~aF~~c~ 323 (401)
T 4fdw_A 255 LP-NGVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG------QGLLGGNR 323 (401)
T ss_dssp EE-TTCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC------TTTTTTCC
T ss_pred eC-CCccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEh------hhhhcCCC
Confidence 42 11111111 1122334555555544321 1223334567777888888774 344441 22334567
Q ss_pred CccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCC-CccEeeccc
Q 038480 714 SLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFA-KLQCLRLQD 777 (850)
Q Consensus 714 ~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~L~~ 777 (850)
+|+.|.|..+ +..+. .+..+ +|+.|.+.++ ....+.. ..+..++ ++..|.+-.
T Consensus 324 ~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~-------~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 324 KVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT-TPPQVFE-------KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS-SCCBCCC-------SSCCCSCTTCCEEEECG
T ss_pred CccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC-CCccccc-------ccccCCCCCccEEEeCH
Confidence 7888888553 44443 25566 8888888774 3444433 1344453 567777654
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=9.6e-08 Score=99.08 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=104.5
Q ss_pred cccchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhhccCCC--CC-C-EEEEEEecCCCCHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN--DF-D-VVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~~s~~~~~~~~~~~ 202 (850)
.+.|||++.++|...|.. +..+.+.|+|++|+|||++|+.|++....... .. + .++.|.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999887754 56778999999999999999999998732111 11 1 4567777787888999999
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHHh---ccCcEEEEEcccCCccccccccccC--C-CCCCCeEEEEecCchhH-----
Q 038480 203 IGERIGSFG--NKSLEEKASDIFKIL---SKKKFLLLLDDVWERIDLVKVGVPF--P-TSENASKVVFTTRLVDV----- 269 (850)
Q Consensus 203 i~~~l~~~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l--~-~~~~gs~iivTtR~~~v----- 269 (850)
|++++.... .....+....+.+.+ ++++++++||+++...+-+.+...+ + .......||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 999996521 111222333333333 4578999999997543211111111 1 11112223333332211
Q ss_pred ----hhhccCcceEeccCCChhhHHHHHHHHhC
Q 038480 270 ----CSLMGAQKKFKIECLRDKEAWELFLEKVG 298 (850)
Q Consensus 270 ----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (850)
.+.++ ...+.+.+++.+|-.+++.+.+.
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 24789999999999999988763
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=2.5e-07 Score=97.97 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=112.1
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. .++.+..+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 35799999999999999876655689999999999999999998751 11111 12334433321111
Q ss_pred CCCCCCHHHHHHHHHHH--h-ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh-Hhhh-ccCcceEec
Q 038480 209 SFGNKSLEEKASDIFKI--L-SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD-VCSL-MGAQKKFKI 281 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l 281 (850)
...+........ + .+++.++|+|+++.. .....+...+.....++.+|+||.... +... ......+.+
T Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 84 -----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp -----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred -----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 111111111111 1 256889999999753 233444444433345677887776543 2111 122357999
Q ss_pred cCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 282 ECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 282 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
.+++.++...++...+....... .++....+++.++|.+..+..+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999988775443221 2456788899999998765443
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=4.6e-07 Score=98.31 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh-
Q 038480 130 PTIVGLESTLDKVWRCFEEVQ-VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI- 207 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l- 207 (850)
..++|++..++.+.+.+..+. ...+.|+|+.|+||||+|+.+++.. .....+. ...+... .....+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~---~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT---ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC---SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC---CCCCccc----HHHHHHhccCC
Confidence 358999999999999997654 3578899999999999999999876 2111110 0000000 0001111000
Q ss_pred ------cCCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh-Hhhh-
Q 038480 208 ------GSFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD-VCSL- 272 (850)
Q Consensus 208 ------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~- 272 (850)
........++ ...+.+.+ .+++.++|+||++.. ..+..+...+.....+..+|++|.... +...
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0000011111 11222222 356789999999643 233333333322334566777765433 2111
Q ss_pred ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 273 MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
......+.+.+++.++...++.+.+...+... ..+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 12236789999999999999987764322111 14557889999999998876554
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=9.9e-08 Score=102.49 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred EEeeccc-ccccccCCCCCCccceeeccc-ccCCCCchhhhcCCCcceEEEccCCCCCcccC-hhhccccCCCeEeeccc
Q 038480 489 RISLLRN-KIVALSETPTCPHLVTLFLAI-NKLDTITSNFFDFMPSLRVLNLSKNLSLKQLP-SEISKLVSLQYLNLSET 565 (850)
Q Consensus 489 ~L~l~~n-~~~~l~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~l~~L~~L~Ls~~ 565 (850)
.++.+++ .+..+|.+..+.+|++|+|++ |.+..+++..|.++++|++|+|++| .+..+| ..+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 788887777788899999986 8888888888888999999999998 676654 46788999999999999
Q ss_pred ccccccchhh
Q 038480 566 SIKELPNELK 575 (850)
Q Consensus 566 ~i~~LP~~i~ 575 (850)
+|+.+|..+.
T Consensus 91 ~l~~~~~~~~ 100 (347)
T 2ifg_A 91 ALESLSWKTV 100 (347)
T ss_dssp CCSCCCSTTT
T ss_pred ccceeCHHHc
Confidence 8888886543
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.46 E-value=1.9e-07 Score=94.40 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=100.4
Q ss_pred cccch---hHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 131 TIVGL---ESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 131 ~~vgr---~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.++|. +..++.+..+......+.+.|+|++|+||||+|+.+++... .....+.|+.++...+. +.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~-- 97 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA-- 97 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG--
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH--
Confidence 45653 35566666666555667899999999999999999998862 12234567766442110 000
Q ss_pred cCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----cccccccCC--CCCCCeEEEEecCchh---------Hhhh
Q 038480 208 GSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----LVKVGVPFP--TSENASKVVFTTRLVD---------VCSL 272 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~--~~~~gs~iivTtR~~~---------v~~~ 272 (850)
..+.+ .++.+||+||++.... ...+...+. ......++|+||+... +...
T Consensus 98 --------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 98 --------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp --------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred --------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 00111 3467899999964321 111211110 0111224777765322 1122
Q ss_pred ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 273 MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
+.....+.+.+++.++..+++...+...... -.++..+.+++.++|.+..+..+.
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHH
Confidence 2223689999999999999998877432211 125567889999999887665433
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=2e-07 Score=90.52 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987666778999999999999999999876
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=1.2e-06 Score=91.09 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
..++|.+..++++.+.+.. .....+.|+|++|+|||++|+.+++.. ... .+.+..+.-...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~~ 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVKK 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHHh
Confidence 4589999999999887742 245678999999999999999999886 222 233333221110
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc----------------ccccccccCC--CCCCCe
Q 038480 197 ERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI----------------DLVKVGVPFP--TSENAS 258 (850)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~~~~gs 258 (850)
............+......++.+|+|||++... .+..+...+. ....+.
T Consensus 91 -------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 157 (285)
T 3h4m_A 91 -------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV 157 (285)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSE
T ss_pred -------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 000011111122223334567899999996421 0111111110 123456
Q ss_pred EEEEecCchhHhh--hc---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC-CchHHHH
Q 038480 259 KVVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG-LPLALIT 328 (850)
Q Consensus 259 ~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~ 328 (850)
.||.||....... .. .-...+.+..++.++..+++...+.......... ...+++.+.| .|-.+..
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 7777887543321 11 1234789999999999999998876544222222 4667777777 4544443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=5.5e-06 Score=90.40 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=17.2
Q ss_pred CCCCCccceeecccccCCCCchhhhcCCCcceEEEcc
Q 038480 503 TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLS 539 (850)
Q Consensus 503 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 539 (850)
|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+++.
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIP 102 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeC
Confidence 344555555555422 444444445555555555554
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=4.6e-07 Score=97.20 Aligned_cols=96 Identities=23% Similarity=0.218 Sum_probs=83.0
Q ss_pred ccccCcccccccceEEEeecc-cccccccC--CCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChh
Q 038480 474 QLSIAPEVRKWRDRRRISLLR-NKIVALSE--TPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSE 550 (850)
Q Consensus 474 ~~~~~~~~~~~~~l~~L~l~~-n~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 550 (850)
.+...|.+..+.+++.|+|++ |.+..++. +.++++|+.|+|++|.++++++..|.++++|++|+|++| .+..+|..
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 455566677788999999996 99998864 789999999999999999999999999999999999999 88888876
Q ss_pred hccccCCCeEeecccccccc
Q 038480 551 ISKLVSLQYLNLSETSIKEL 570 (850)
Q Consensus 551 i~~l~~L~~L~Ls~~~i~~L 570 (850)
+.....|++|+|.+|.+...
T Consensus 99 ~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp TTCSCCCCEEECCSSCCCCC
T ss_pred HcccCCceEEEeeCCCccCC
Confidence 65544599999999988744
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=6.3e-08 Score=104.50 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=64.1
Q ss_pred cceEEEeecccccccc-----cC-C-CCCCccceeecccccCCCCc-hhhhcCCCcceEEEccCCCCCcccC-hhh----
Q 038480 485 RDRRRISLLRNKIVAL-----SE-T-PTCPHLVTLFLAINKLDTIT-SNFFDFMPSLRVLNLSKNLSLKQLP-SEI---- 551 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l-----~~-~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i---- 551 (850)
+.++.|++++|.+... .. + ..+++|++|++++|.++... ..++..+++|+.|+|++| .++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 3678888888887542 11 1 24478999999998875432 233445678899999999 665422 222
Q ss_pred -ccccCCCeEeeccccccc-----ccchhhcCCccceeecc
Q 038480 552 -SKLVSLQYLNLSETSIKE-----LPNELKALTNLKCWNLE 586 (850)
Q Consensus 552 -~~l~~L~~L~Ls~~~i~~-----LP~~i~~L~~L~~L~l~ 586 (850)
...++|++|+|++|.++. ++..+..+++|++|+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence 235789999999998763 44444444445444443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.5e-06 Score=93.51 Aligned_cols=193 Identities=11% Similarity=0.128 Sum_probs=109.8
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccC-CCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDT-PNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+..... ...+ .++.+..+.......+. +....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHHHh
Confidence 3579999999999999987655558999999999999999998874100 0111 23334444333333222 2221111
Q ss_pred CC-CCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEEecCchh-Hhhhc-cCcceEeccC
Q 038480 209 SF-GNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVFTTRLVD-VCSLM-GAQKKFKIEC 283 (850)
Q Consensus 209 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~ 283 (850)
.. ....... .....-.+++-+|++|+++... ....+...+.......++|++|.... +...+ .....+.+.+
T Consensus 115 ~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 115 RLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKA 191 (353)
T ss_dssp HSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCC
T ss_pred hhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCC
Confidence 10 0000000 0001112355699999996432 22223222222234566777665432 21111 1124789999
Q ss_pred CChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 284 LRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 284 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
++.++....+.+.+....... .++..+.|++.++|.|..+..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999988765433222 25668899999999998754433
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.32 E-value=3.4e-06 Score=92.86 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=103.4
Q ss_pred cc-chhHH--HHHHHHHhccCC-ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 132 IV-GLEST--LDKVWRCFEEVQ-VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 132 ~v-gr~~~--~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
|+ |.... ...+.......+ ...+.|+|++|+||||||+.+++.... ...-..+++++++ .+..++...+
T Consensus 107 fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~~ 179 (440)
T 2z4s_A 107 FVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDSM 179 (440)
T ss_dssp CCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHHH
Confidence 44 64432 333344433332 568999999999999999999987621 1111234555433 3344444444
Q ss_pred cCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----cccccccCCC-CCCCeEEEEecCch---------hHhhhc
Q 038480 208 GSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----LVKVGVPFPT-SENASKVVFTTRLV---------DVCSLM 273 (850)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~ 273 (850)
.. .. ...+.+.++.++-+|++||++.... .+.+...+.. ...|..||+||.+. .+...+
T Consensus 180 ~~---~~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~ 252 (440)
T 2z4s_A 180 KE---GK----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_dssp HT---TC----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH
T ss_pred Hc---cc----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc
Confidence 32 11 1223344444677999999964321 1222111100 13466788888752 223334
Q ss_pred cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 274 GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.....+.+.+++.++...++.+.+.......++ ++...|++.++|.+-.+.
T Consensus 253 ~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 253 QMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 444678999999999999998877432222222 346788899999886553
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.28 E-value=1.6e-05 Score=84.77 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=101.0
Q ss_pred CcccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
..++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+.++.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 4589999999999888863 344578999999999999999998875 2222 33433322211111
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccC------------------CCCCCCeEEEEec
Q 038480 205 ERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPF------------------PTSENASKVVFTT 264 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l------------------~~~~~gs~iivTt 264 (850)
...+.. ..+..+|+||+++... ....+...+ ....++..+|.||
T Consensus 98 --------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 98 --------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp --------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred --------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 111111 2456788999997431 111110000 0011134566555
Q ss_pred CchhH-hhhc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 265 RLVDV-CSLM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 265 R~~~v-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
..... ...+ .....+.+.+++.++...++.+.+...... -..+..+.+++.+.|.|-.+..+
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 54322 1111 123579999999999999998877533211 12456788888999999655443
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=1.8e-05 Score=81.37 Aligned_cols=191 Identities=17% Similarity=0.102 Sum_probs=103.7
Q ss_pred cccchhHHHHHHHH-------Hhc---cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 131 TIVGLESTLDKVWR-------CFE---EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 131 ~~vgr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
.++|.+..++++.. .+. ......+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~------ 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM------ 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh------
Confidence 46777776666555 332 2356688999999999999999999875 2222 223332210
Q ss_pred HHHHHHhcCCCCCCHHH----HHHHHHHHhccCcEEEEEcccCCc-----------cc-cccccccCC---CCCCCeEEE
Q 038480 201 EKIGERIGSFGNKSLEE----KASDIFKILSKKKFLLLLDDVWER-----------ID-LVKVGVPFP---TSENASKVV 261 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~----~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~~~~~l~---~~~~gs~ii 261 (850)
+ ...... ....+......++.+|+|||++.. .. +..+...+. .......||
T Consensus 102 ------~----g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 102 ------I----GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp ------T----TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred ------c----CCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0 111111 112222333467889999998642 01 111211111 122334566
Q ss_pred EecCchhHhhhc---cC-cceEeccCCCh-hhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC------chHHHHHH
Q 038480 262 FTTRLVDVCSLM---GA-QKKFKIECLRD-KEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL------PLALITIG 330 (850)
Q Consensus 262 vTtR~~~v~~~~---~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~------Plai~~~~ 330 (850)
.||...+....+ +. ...+.+.+++. ++...++.+... . ..+....|++.+.|. +-++..+-
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 677766553321 11 35688888988 666666655321 1 145578888888883 33333333
Q ss_pred hhhcCCCCHHHHHHHHHHHhhc
Q 038480 331 RAMGSKNTPEEWRYAIEMLRRS 352 (850)
Q Consensus 331 ~~l~~~~~~~~w~~~l~~l~~~ 352 (850)
.+. .......+..+++.+...
T Consensus 244 ~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHh-hhchHHHHHHHHHHHHHc
Confidence 322 223445666666665543
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=1.6e-05 Score=86.66 Aligned_cols=274 Identities=15% Similarity=0.161 Sum_probs=148.7
Q ss_pred ccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCC---------------
Q 038480 480 EVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNL--------------- 542 (850)
Q Consensus 480 ~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~--------------- 542 (850)
.+.+|.+++.+.+.. .++.++ .|.+|.+|+.+.+..+ ++.+....|.++.+|+.+.+..+-
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 456778899998874 466663 4678899999988754 666777778888777776654320
Q ss_pred -----CCccc-ChhhccccCCCeEeecccccccccc-hhhcCCccceeecc--------cccccCCCccEEeccCCCCCC
Q 038480 543 -----SLKQL-PSEISKLVSLQYLNLSETSIKELPN-ELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTA 607 (850)
Q Consensus 543 -----~i~~l-p~~i~~l~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~ 607 (850)
....+ ...+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+. ..+..+..|+.+.+..+...
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE-
Confidence 01111 134667889999999765 344543 46778888888876 33455666666655433211
Q ss_pred CCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCee
Q 038480 608 DPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKL 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 687 (850)
.-........|+.+.+... ...+.. .....+..++.+.+..+ ...+....+..+..|+.+
T Consensus 222 ---------------i~~~~~~~~~l~~i~ip~~-~~~i~~--~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 222 ---------------LGDFALSKTGVKNIIIPDS-FTELGK--SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKV 281 (394)
T ss_dssp ---------------ECTTTTTTCCCCEEEECTT-CCEECS--STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEE
T ss_pred ---------------eehhhcccCCCceEEECCC-ceeccc--ccccccccceeEEcCCC--cceeecccccccccccee
Confidence 0011122345555555421 111111 11122345666665433 222222334555566655
Q ss_pred eeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCC
Q 038480 688 DFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLN 765 (850)
Q Consensus 688 ~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~ 765 (850)
...... +. ......+.+|+.+.+..+ ++.++ .+..+++|+.++|.. .++.|.. ..+.
T Consensus 282 ~~~~~~-i~---------~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~ 340 (394)
T 4fs7_A 282 IYGSVI-VP---------EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-------RSFR 340 (394)
T ss_dssp EECSSE-EC---------TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-------TTTT
T ss_pred ccCcee-ec---------cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-------Hhcc
Confidence 544321 11 011224566777766543 33333 245667777777743 3555543 2455
Q ss_pred cCCCccEeecccccccccccc-CCCCCCCccEEeec
Q 038480 766 PFAKLQCLRLQDLSNLEKIYW-NALSFPDLLELFVS 800 (850)
Q Consensus 766 ~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~i~ 800 (850)
++.+|+.+.|.. +++.+.. ....|++|+.+.+.
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 666777776653 2555543 23455666666654
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.28 E-value=9.6e-06 Score=89.08 Aligned_cols=175 Identities=16% Similarity=0.140 Sum_probs=103.5
Q ss_pred CcccchhHHH---HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHH
Q 038480 130 PTIVGLESTL---DKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~---~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~ 205 (850)
..++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+.+.. ...| +.++.. .....+ +.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHHH
Confidence 3579998888 678888877777889999999999999999999886 2222 222221 222222 11111
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEE-EecCchhH---hhhccCcceE
Q 038480 206 RIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVV-FTTRLVDV---CSLMGAQKKF 279 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~ii-vTtR~~~v---~~~~~~~~~~ 279 (850)
.. ......+++.+|++|+++.. ...+.+...+.. + ...+| .||.+... .........+
T Consensus 97 ~a--------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 97 RA--------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVY 160 (447)
T ss_dssp HH--------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEE
T ss_pred HH--------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEE
Confidence 10 01112467889999999743 223333222222 1 22333 35555432 1112233578
Q ss_pred eccCCChhhHHHHHHHHhCCCCCC----CCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 280 KIECLRDKEAWELFLEKVGEEPLV----SHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~----~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
.+.+++.++...++.+.+...... ...-.++..+.+++.++|.+..+..+
T Consensus 161 ~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 161 LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp ECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 899999999999998886431100 01122456788888899988665433
No 176
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=4.2e-05 Score=83.34 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=59.6
Q ss_pred cccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCcc--cccCCCCceEEeecccccceecc
Q 038480 677 YLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVTW--LAFAPNLKFVHIERCYEMDEIIS 754 (850)
Q Consensus 677 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~ 754 (850)
.+..+..|+.+.+... +..+ + ...+..+.+|+.+.+.. .+..++. +..+++|+.+.|.. .++.|..
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I---~---~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSI---G---TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEE---C---TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred eeeecccccEEecccc--ccee---c---CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH
Confidence 3455666666666432 2222 0 11223456777777653 3444442 55677777777754 3566644
Q ss_pred ccccCCCCCCCcCCCccEeecccccccccccc-CCCCCCCccEEeec----------cCCCCCCCCCC
Q 038480 755 VWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-NALSFPDLLELFVS----------ECPKLKKLPLD 811 (850)
Q Consensus 755 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~i~----------~C~~L~~Lp~~ 811 (850)
..+..+.+|+.+.|-. +++.+.. .+..|++|+.+.+. .|.+|+.+++.
T Consensus 328 -------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 328 -------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp -------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred -------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 2556677777777743 3555543 34456777777664 35556655543
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=3.1e-06 Score=90.97 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHh-ccCCceEEEEEcCCCChHHHHHHHHHHhhccCC-C--CCCE--------------------E
Q 038480 130 PTIVGLESTLDKVWRCF-EEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTP-N--DFDV--------------------V 185 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 185 (850)
..++|.+..++.+.+++ ..+..+.+.|+|+.|+||||+|+.+++...... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 35799999999999988 665544599999999999999999988531111 0 0000 1
Q ss_pred EEEEecCCC-CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccccCCCCCCCeEEEE
Q 038480 186 IWVVVSKDM-QLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGVPFPTSENASKVVF 262 (850)
Q Consensus 186 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~iiv 262 (850)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++.... ....+...+.....+..+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il 169 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM 169 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc--ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE
Confidence 111111100 000012222222221000 00000 00 0023467799999997532 12222222211123567777
Q ss_pred ecCchh-Hhhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 263 TTRLVD-VCSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 263 TtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
+|.+.. +...+ .....+++.+++.++....+.+.+.......+ .++....|++.++|.+..+..+.
T Consensus 170 ~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 170 VCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 765432 22211 22367899999999999999887743321111 03457889999999887665444
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=3.8e-06 Score=94.75 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHhcc-----------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 130 PTIVGLESTLDKVWRCFEE-----------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 4589999999999999864 134689999999999999999999876 12 244555555
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HhccCcEEEEEcccCCccc-----cccccccCCCCCCCeEEEEecC
Q 038480 193 DMQLERIQEKIGERIGSFGNKSLEEKASDIFK--ILSKKKFLLLLDDVWERID-----LVKVGVPFPTSENASKVVFTTR 265 (850)
Q Consensus 193 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~gs~iivTtR 265 (850)
...... ....+..... ..+.........+ ...+++.+|++|+++.... +..+...+.. .+..||+++.
T Consensus 113 ~~~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKTL-LNAGVKNALD--NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCCHHH-HHHTGGGGTT--BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred cchHHH-HHHHHHHHhc--cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 444332 2222221111 0000000000000 1235788999999974321 1222111111 1223554443
Q ss_pred chh---HhhhccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc-hHHHHHHh
Q 038480 266 LVD---VCSLMGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP-LALITIGR 331 (850)
Q Consensus 266 ~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~ 331 (850)
+.. +.........+.+.+++.++..+++...+.......++ +....|++.++|.+ .++..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 322 22212223578999999999999988876443322232 34778999999954 45555443
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=4.1e-07 Score=98.08 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=71.3
Q ss_pred cceEEEeecccccccc--cCC-CCCCccceeecccccCCCCchhhh-----cCCCcceEEEccCCCCCcc-----cChhh
Q 038480 485 RDRRRISLLRNKIVAL--SET-PTCPHLVTLFLAINKLDTITSNFF-----DFMPSLRVLNLSKNLSLKQ-----LPSEI 551 (850)
Q Consensus 485 ~~l~~L~l~~n~~~~l--~~~-~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~~~~i~~-----lp~~i 551 (850)
.+++.|++++|.+... ..+ ..+++|+.|++++|.++......+ ...++|+.|+|++| .++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 5899999999988542 222 345689999999998865543333 35788999999999 6654 55566
Q ss_pred ccccCCCeEeeccccccc-----ccchhhcCCccceeecc
Q 038480 552 SKLVSLQYLNLSETSIKE-----LPNELKALTNLKCWNLE 586 (850)
Q Consensus 552 ~~l~~L~~L~Ls~~~i~~-----LP~~i~~L~~L~~L~l~ 586 (850)
..+++|++|+|++|.|.. ++..+...++|++|+++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 788999999999998873 33444444444444443
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.19 E-value=9.4e-05 Score=77.77 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+.- ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4578999888888776631 123678899999999999999999875 1 11 233344432211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCccc-------------ccccccc---CCCCCCCeEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWERID-------------LVKVGVP---FPTSENASKV 260 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~gs~i 260 (850)
........ ....+.+ .-..++.+|+||+++.... ...+... +.....+..|
T Consensus 85 -----------~~~g~~~~-~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------KWLGESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------SSCCSCHH-HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hhhhHHHH-HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 01112222 2222322 3346788999999974310 0011111 1112345556
Q ss_pred EEecCchhHhh-hc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHh
Q 038480 261 VFTTRLVDVCS-LM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALITIGR 331 (850)
Q Consensus 261 ivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 331 (850)
|.||....... .+ .-...+.+...+.++-..++...+....... .......|++.+.|. +-.|..+.+
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 65665433211 00 2335788899999999999998875443111 244578899999886 444554443
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=9.7e-06 Score=82.89 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=98.7
Q ss_pred CcccchhHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 357899888877766542 1 223468899999999999999999986 222 344444332110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc-------------c----cccccccCC--CCCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI-------------D----LVKVGVPFP--TSENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~~~~~l~--~~~~gs 258 (850)
............+.......+.+|++||++... . +..+...+. ....+.
T Consensus 79 ------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 ------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 001111112222233334567899999997531 0 111111111 112355
Q ss_pred EEEEecCchhHhh-hc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 038480 259 KVVFTTRLVDVCS-LM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITI 329 (850)
Q Consensus 259 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 329 (850)
.||.||....... .+ .-...+.+..++.++-.+++...+..... ..........+++.+.|.+- .+..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 6666776544321 11 12357789999999999999887643331 12222234788888888754 44433
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.16 E-value=3.4e-05 Score=81.37 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=103.9
Q ss_pred CcccchhHHHHHHHHHhc----------c--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE----------E--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~----------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.+.++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 357999999999988772 1 123568999999999999999999986 222 2333321
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCccc-------------cccccc---cCCCCCCCeEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWERID-------------LVKVGV---PFPTSENASKV 260 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~---~l~~~~~gs~i 260 (850)
.+.. .. .. ..+.....+.+ .-..++.+|+||+++.... ...+.. .+.....+..|
T Consensus 86 ~l~~----~~---~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 86 DLVS----KW---MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HHHT----TT---GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HHhh----cc---cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 1111 00 01 11222222322 2345678999999974311 111111 11122345566
Q ss_pred EEecCchhHhh-hc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHh
Q 038480 261 VFTTRLVDVCS-LM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALITIGR 331 (850)
Q Consensus 261 ivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 331 (850)
|.||....... .+ .-...+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+..
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66776543311 00 2235678889999999999999886543111 234567888998874 545554443
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.15 E-value=4.3e-05 Score=81.77 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=103.0
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 3579999999998887742 245678999999999999999999875 22 2345554432110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCcc-------------ccccccccCC----CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWERI-------------DLVKVGVPFP----TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~----~~~~gs~ 259 (850)
... ........+.. .-..++.+|+||+++... ....+...+. ....+..
T Consensus 157 ------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 ------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 000 01111222222 223567899999995321 0111111111 1123455
Q ss_pred EEEecCchhHh-hhc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC-CchHHHHHHh
Q 038480 260 VVFTTRLVDVC-SLM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG-LPLALITIGR 331 (850)
Q Consensus 260 iivTtR~~~v~-~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 331 (850)
||.||...... ..+ .....+.+...+.++...++...+....... .......|++.+.| .+-.+..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56566543221 111 1234678889999999999988764332111 14567889999988 4555555544
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=7.4e-06 Score=86.09 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=84.8
Q ss_pred cccchhHHHHHHHHHhc---------------cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC--EEEEEEecCC
Q 038480 131 TIVGLESTLDKVWRCFE---------------EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD--VVIWVVVSKD 193 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~ 193 (850)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.. ....... .++.+..+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHHHh
Confidence 47899888888876653 2234478999999999999999888775 2112211 2233322111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc-----------cccccccccCCCCCCCeEEEE
Q 038480 194 MQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER-----------IDLVKVGVPFPTSENASKVVF 262 (850)
Q Consensus 194 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs~iiv 262 (850)
. ..............+.. .+.-+|++|+++.. .....+...+.....+..||.
T Consensus 111 ~-------------~~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 111 V-------------GQYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp C-------------CSSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred h-------------hhcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 00001111111111221 23459999999733 112222222222334567777
Q ss_pred ecCchhH----------hhhccCcceEeccCCChhhHHHHHHHHhCC
Q 038480 263 TTRLVDV----------CSLMGAQKKFKIECLRDKEAWELFLEKVGE 299 (850)
Q Consensus 263 TtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 299 (850)
||..... .+. ....+.+.+++.++-..++...+..
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7764332 111 1267899999999999999887643
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.11 E-value=5.1e-05 Score=81.02 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=101.5
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.+.++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 3579999999998887631 123458899999999999999999986 222 2333322
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------ccccccc---CCCCCCCeEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVP---FPTSENASKVV 261 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~gs~ii 261 (850)
++.. .............+...-..++.+|+||+++.... ...+... +.....+..||
T Consensus 119 ~l~~-------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 119 DLVS-------KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp HHHS-------CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred HHhh-------hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 1111 11111222222222223345789999999974321 1111111 11123455566
Q ss_pred EecCchhHhh-hc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHH
Q 038480 262 FTTRLVDVCS-LM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALITIG 330 (850)
Q Consensus 262 vTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 330 (850)
.||....... .+ .-...+.+...+.++-..++...+....... .......|++.+.|. +-.|..+.
T Consensus 192 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6665443211 00 2345778899999999999998876543111 134568889999884 44455444
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.11 E-value=1.4e-05 Score=84.57 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=99.9
Q ss_pred CcccchhHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 130 PTIVGLESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
..++|.+..++.+.+++..+.. .++.+.|++|+|||++|+.+++.. . ..++.+..+.. ....+ +.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~------ 91 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RG------ 91 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HT------
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HH------
Confidence 4579999999999999987543 567788889999999999999875 1 23445554432 22221 11
Q ss_pred CCCCCCHHHHHHHHHHHh-----ccCcEEEEEcccCCcc---ccccccccCCCCCCCeEEEEecCchhH-hhhc-cCcce
Q 038480 209 SFGNKSLEEKASDIFKIL-----SKKKFLLLLDDVWERI---DLVKVGVPFPTSENASKVVFTTRLVDV-CSLM-GAQKK 278 (850)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~~~ 278 (850)
.+.+.. .+++-+|++||++... ....+...+.....+.++|+||....- ...+ .....
T Consensus 92 ------------~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 92 ------------PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp ------------HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred ------------HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 122211 2367899999997543 222222222111234677777765432 1111 11247
Q ss_pred EeccCCChhhHHHH-------HHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 279 FKIECLRDKEAWEL-------FLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 279 ~~l~~L~~~e~~~l-------f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
+.+.+++.++-.++ +...+.......++ .+....|++.++|.+..+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 89999998874333 33333222211111 2667889999988776543
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.10 E-value=1.6e-05 Score=85.92 Aligned_cols=188 Identities=13% Similarity=0.083 Sum_probs=101.0
Q ss_pred CcccchhHHHHH---HHHHhccCCc--eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec----CCCCHHHHH
Q 038480 130 PTIVGLESTLDK---VWRCFEEVQV--GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS----KDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~---l~~~l~~~~~--~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s----~~~~~~~~~ 200 (850)
..++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.. .....| +.+... ........+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 468999988776 4555554433 589999999999999999999987 211122 223322 122333333
Q ss_pred HHHHHHhcC--------------------------------CCCCCHHHHHHHHHHHh-----ccC----cEEEEEcccC
Q 038480 201 EKIGERIGS--------------------------------FGNKSLEEKASDIFKIL-----SKK----KFLLLLDDVW 239 (850)
Q Consensus 201 ~~i~~~l~~--------------------------------~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 239 (850)
.+....... .......+....+.+.. .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333222100 00000122222222221 133 3599999997
Q ss_pred Cc--cccccccccCCCCCCCeEEEEecC-c----------------hhHhhhccCcceEeccCCChhhHHHHHHHHhCCC
Q 038480 240 ER--IDLVKVGVPFPTSENASKVVFTTR-L----------------VDVCSLMGAQKKFKIECLRDKEAWELFLEKVGEE 300 (850)
Q Consensus 240 ~~--~~~~~~~~~l~~~~~gs~iivTtR-~----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (850)
.. .....+...+...... .++++|. . +.+.+ ....+.+.+++.++...++...+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHc
Confidence 53 2222222222222222 2443332 1 11222 22457999999999999999877543
Q ss_pred CCCCCCChHHHHHHHHHHcC-CCchHHHH
Q 038480 301 PLVSHPDIPMLAQAMAKECA-GLPLALIT 328 (850)
Q Consensus 301 ~~~~~~~~~~~~~~i~~~~~-G~Plai~~ 328 (850)
.... ..+..+.|++.+. |.|..+..
T Consensus 276 ~~~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 DVEM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TCCB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 3111 2456788888887 77765543
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.08 E-value=0.00012 Score=79.50 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=100.3
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+++.. ...+-|.|+|.+|+|||++|+.+++.. .. .++.+.++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc-
Confidence 3579999999999888731 224678999999999999999998875 22 2334433332110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------cccccccC---C-CCCCCeEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVPF---P-TSENASKV 260 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~-~~~~gs~i 260 (850)
. ...........+...-..++.+|+||+++.... ...+...+ . .......|
T Consensus 188 -~-----------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 188 -Y-----------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred -c-----------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 0 011111112222222234668999999964310 00111101 0 11223455
Q ss_pred EEecCchhHh-hhc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038480 261 VFTTRLVDVC-SLM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIG 330 (850)
Q Consensus 261 ivTtR~~~v~-~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 330 (850)
|.||...... ..+ .....+.+...+.++...++...+...... -..+....|++.+.|..- ++..+.
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566543221 111 122468899999999999999887654311 124467889999988654 554443
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.04 E-value=0.00011 Score=76.61 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=100.3
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
..++|.+..++++.+++.. ...+.|.|+|++|+|||+||+.+++.. ... .+.+. .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEEE------h
Confidence 3578999888888777642 234678999999999999999999876 222 22232 2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----------------cccccccCC--CCCCCe
Q 038480 197 ERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----------------LVKVGVPFP--TSENAS 258 (850)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~gs 258 (850)
.++.... ++. ........+.......+.+|++|+++.... ...+...+. ....+.
T Consensus 83 ~~l~~~~---~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMW---FGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHH---HTT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhh---cCc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 2332222 111 112222333333446789999999973210 111111110 122356
Q ss_pred EEEEecCchhHhh-h-cc---CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchH
Q 038480 259 KVVFTTRLVDVCS-L-MG---AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLA 325 (850)
Q Consensus 259 ~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 325 (850)
.||.||...+... . .. -...+.+...+.++-.+++...+.......+.++ ..+++.+.|.|-+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 6777776553321 1 11 2357889999999999999888755432222233 4566677777644
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=2.6e-05 Score=83.09 Aligned_cols=173 Identities=14% Similarity=0.209 Sum_probs=102.4
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhcC
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIGS 209 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 209 (850)
.++|.+..++.+...+..++.+.+.++|+.|+||||+|+.+++... ...+. .+.-+..+.......+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i---------- 93 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVV---------- 93 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHH----------
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHH----------
Confidence 4689988899998888877655589999999999999999998751 11111 1222222222222221
Q ss_pred CCCCCHHHHHHHHHHHh------ccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh-Hhhhc-cCcceE
Q 038480 210 FGNKSLEEKASDIFKIL------SKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD-VCSLM-GAQKKF 279 (850)
Q Consensus 210 ~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~ 279 (850)
.+.+.... .+.+-++|+|+++.. .....+...+......+++|++|.... +...+ .....+
T Consensus 94 ---------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 94 ---------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp ---------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ---------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 11222211 234678999999642 222222222211223556676665332 21111 122478
Q ss_pred eccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHH
Q 038480 280 KIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALI 327 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 327 (850)
.+.+++.++....+.+.+.......+ ++..+.|++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 89999999999988877633221111 4557889999999887543
No 191
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=8.5e-05 Score=78.67 Aligned_cols=171 Identities=9% Similarity=0.085 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhccCCc-eEEEEEcCCCChHHHHHHHHHHhhccCC-------------------CCCCEEEEEEec---C
Q 038480 136 ESTLDKVWRCFEEVQV-GIIGLYGMGGVGKTTLLTQINNKFIDTP-------------------NDFDVVIWVVVS---K 192 (850)
Q Consensus 136 ~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s---~ 192 (850)
++..+.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4556777777776553 4789999999999999999998762111 1133 2233221 1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCchh-H
Q 038480 193 DMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLVD-V 269 (850)
Q Consensus 193 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~~-v 269 (850)
...+..+ +++.+.+... -..+++-++|+|+++.. .....+...+-....++.+|++|.+.+ +
T Consensus 87 ~~~i~~i-r~l~~~~~~~--------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEH--------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp SBCHHHH-HHHHHHTTSC--------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CCCHHHH-HHHHHHHhhc--------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 1222211 2222222110 01256789999999753 223333333333334667776666543 3
Q ss_pred hhhc-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038480 270 CSLM-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIG 330 (850)
Q Consensus 270 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 330 (850)
...+ .....+++.+++.++....+.+.. . . .++.+..+++.++|.|..+..+.
T Consensus 152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPPEQYAVTWLSREV---T--M---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--C---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 2222 223578999999999999998875 1 1 13456889999999998776544
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=0.00023 Score=74.11 Aligned_cols=178 Identities=12% Similarity=0.076 Sum_probs=101.2
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 3579999999998887632 234678999999999999999999876 22 233444433211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHH-HHhccCcEEEEEcccCCcccc-------------ccc---cccCCCC--CCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIF-KILSKKKFLLLLDDVWERIDL-------------VKV---GVPFPTS--ENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~-------------~~~---~~~l~~~--~~gs 258 (850)
.. ..........+. .....++.+|++|+++....- ..+ ...++.. +.+.
T Consensus 93 -----------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 111222222222 223457789999999643110 001 0111111 2345
Q ss_pred EEEEecCchhHhh-hc--cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038480 259 KVVFTTRLVDVCS-LM--GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL-ALITIG 330 (850)
Q Consensus 259 ~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 330 (850)
.||.||....... .+ .....+.+...+.++...++...+...... -.......+++.+.|.+- ++..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666776543211 00 123567788888888888888776433211 113456789999999876 554443
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.98 E-value=0.00019 Score=79.04 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=101.4
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++.+.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. . ++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~---~--~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---T--FFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS---E--EEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC---C--EEEEeHHH---
Confidence 4579999999988887631 234678999999999999999999875 1 11 1 23333221
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------cccccccCCC---CCCCeEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVPFPT---SENASKVV 261 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~---~~~gs~ii 261 (850)
+.... .+. ....... .+...-..++.+|+||+++.... ...+...+.. ...+..||
T Consensus 204 -l~~~~---~g~-~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 204 -LVSKW---LGE-SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred -HHhhh---cch-HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 11110 111 1111121 12222245788999999974310 1112122211 23456666
Q ss_pred EecCchhHhh-h-c-cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHHHHh
Q 038480 262 FTTRLVDVCS-L-M-GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALITIGR 331 (850)
Q Consensus 262 vTtR~~~v~~-~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 331 (850)
.||....... . . .....+.+...+.++...+|...+....... .......|++.+.|. +-.|..+..
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6775443211 1 1 2235678888889999999988875443111 134567889999884 445544433
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=1.3e-05 Score=77.10 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987666778999999999999999999876
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=5e-05 Score=80.27 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=93.0
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHH
Q 038480 139 LDKVWRCFEEV--QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLE 216 (850)
Q Consensus 139 ~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 216 (850)
...+...+... ....+.|+|++|+||||||+.+++..... .+ .++++++ ..+...+...+.. ...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~~~~~---~~~- 89 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVEHLKK---GTI- 89 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHHHHHH---TCH-
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHHHHHc---CcH-
Confidence 33444444433 34678999999999999999999876211 12 2455543 2333444433321 111
Q ss_pred HHHHHHHHHhccCcEEEEEcccCCccc----cccccccCCC-CCCCeEEEEecCch---------hHhhhccCcceEecc
Q 038480 217 EKASDIFKILSKKKFLLLLDDVWERID----LVKVGVPFPT-SENASKVVFTTRLV---------DVCSLMGAQKKFKIE 282 (850)
Q Consensus 217 ~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~ 282 (850)
..+.+.+ .+.-+|++||+..... ...+...+.. ...|..||+||... .+...+.....+.+.
T Consensus 90 ---~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~ 165 (324)
T 1l8q_A 90 ---NEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE 165 (324)
T ss_dssp ---HHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred ---HHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeC
Confidence 1222222 2367999999965321 1222111110 12345677777532 122233333578999
Q ss_pred CCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHH
Q 038480 283 CLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLAL 326 (850)
Q Consensus 283 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 326 (850)
+ +.++...++...+.......+ ++....|++.+ |..-.+
T Consensus 166 ~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 166 L-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp C-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred C-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 9 999999999888743332222 45677888888 766543
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.8e-06 Score=78.54 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=17.2
Q ss_pred CccEeecccccccccccc-CCCCCCCccEEeeccCCCCCC
Q 038480 769 KLQCLRLQDLSNLEKIYW-NALSFPDLLELFVSECPKLKK 807 (850)
Q Consensus 769 ~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~i~~C~~L~~ 807 (850)
+|++|+|++|+++++-.. ....+++|++|++++|++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 444444444444433211 112345555555555555543
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=4.1e-06 Score=78.34 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=19.4
Q ss_pred CCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccc
Q 038480 737 NLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEK 783 (850)
Q Consensus 737 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 783 (850)
+|++|+|++|..+++-.- ..+..+++|++|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHH-------HHHhcCCCCCEEECCCCCCCCc
Confidence 455555555555444211 1233455555555555555444
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.1e-05 Score=86.14 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=77.1
Q ss_pred hhhcCCCcceEEEccCCCCCcccChhhccccCCCeEeeccccccc-ccchhhcCCccceeecccccccCCCccEEeccCC
Q 038480 525 NFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYLNLSETSIKE-LPNELKALTNLKCWNLEQLISSFSDLRVLRMLDC 603 (850)
Q Consensus 525 ~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L~Ls~~~i~~-LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~ 603 (850)
.++..+++|+.|+|++|..+ .+|. + .+++|+.|++..|.+.. ....+. ...+++|++|++..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~-------------~~~lp~L~~L~L~~~ 229 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL-------------GSDLPNLEKLVLYVG 229 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH-------------HSBCTTCCEEEEECB
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH-------------HccCCCCcEEEEecc
Confidence 45677888888888887323 3443 3 37788888888776541 111222 023445555554321
Q ss_pred --CCCCCCCCCcccccCCccccH-HHh--ccCCCCCEEEEEeCchhhh--hhhhcCCCccccceEEEeeecCCCCcccc-
Q 038480 604 --GFTADPVPEDSVLFGGSEILV-EEL--INLKHLDVLTVSLRSFCAL--QKLWSSPKLQSSTKSLQLRECKDSKSLNI- 675 (850)
Q Consensus 604 --~~~~~~~~~~~~~~~~~~~~~-~~L--~~L~~L~~L~l~~~~~~~l--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~- 675 (850)
...+. . ....+ ..+ ..+++|+.|++..+.+... ..+... ..+++|+.|+|+.|. +++...
T Consensus 230 ~~~~~~~-~---------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~-L~d~G~~ 297 (362)
T 2ra8_A 230 VEDYGFD-G---------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGV-LTDEGAR 297 (362)
T ss_dssp CGGGTCC-S---------CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSC-CBHHHHH
T ss_pred ccccccc-h---------hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCC-CChHHHH
Confidence 10000 0 00001 111 2467888888887765431 222222 345788999997765 443211
Q ss_pred ---ccccCcCCcCeeeeccCC
Q 038480 676 ---SYLADLKHLDKLDFAYCS 693 (850)
Q Consensus 676 ---~~l~~~~~L~~L~l~~~~ 693 (850)
..+.++++|+.|++++|.
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhhcccCCcceEEECCCCc
Confidence 234567889999998884
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=0.00012 Score=81.31 Aligned_cols=149 Identities=13% Similarity=0.144 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCC--CCC-C-EEEEEEecCCCCHHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTP--NDF-D-VVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.++||+.+++.+.+.+......-+.++|.+|+|||++|+.+++...... ... + .++.+.++ ...
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~~~ 248 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------TKY 248 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------ccc
Confidence 4899999999999999765556678999999999999999998852100 001 1 12223322 000
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhH------h-hhccCcceE
Q 038480 207 IGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDV------C-SLMGAQKKF 279 (850)
Q Consensus 207 l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v------~-~~~~~~~~~ 279 (850)
.+ .........+...-..++.+|++|. .......+...+. ....++|.+|..... . ....-...+
T Consensus 249 ~g----~~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i 320 (468)
T 3pxg_A 249 RG----EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (468)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred cc----hHHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccc
Confidence 00 0001112222222335678999991 1122222222222 123456655543331 0 111122468
Q ss_pred eccCCChhhHHHHHHHHhCC
Q 038480 280 KIECLRDKEAWELFLEKVGE 299 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~ 299 (850)
.+..++.++...++...+..
T Consensus 321 ~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 321 QVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ECCCCCHHHHHHHHHHTTTT
T ss_pred eeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987644
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00043 Score=73.58 Aligned_cols=169 Identities=16% Similarity=0.209 Sum_probs=99.3
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~sk- 221 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQK- 221 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSCS-
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhcc-
Confidence 467888888888766531 234568899999999999999999987 233 244444332110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHH-HHhccCcEEEEEcccCCcc----------c------cccccccCC--CCCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIF-KILSKKKFLLLLDDVWERI----------D------LVKVGVPFP--TSENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~--~~~~gs 258 (850)
+.+.+ +...+.+. ..-...+.+|++|+++... + ...+...+. ....+.
T Consensus 222 ------------~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 222 ------------YIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp ------------STTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ------------ccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 01111 11222222 2224678999999997421 0 011111111 223445
Q ss_pred EEEEecCchhHhh--hc---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||.||...+..+ .+ .-+..+.+...+.++-.++|+.+........+.+ ...|++.+.|.-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 5666776544421 11 2456899999999999999988876544232333 466778888754
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.0007 Score=73.59 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=72.5
Q ss_pred cccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCCCCccEEecccCCCCCCCc--ccc
Q 038480 656 QSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLA 733 (850)
Q Consensus 656 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~ 733 (850)
+..|+.+.+... ...+....+.++++|+.+.+.. .+..+. ...+..+.+|+.+.|..+ ++.+. .+.
T Consensus 264 c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~------~~aF~~c~~L~~i~lp~~--v~~I~~~aF~ 331 (394)
T 4gt6_A 264 CAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELP------ESVFAGCISLKSIDIPEG--ITQILDDAFA 331 (394)
T ss_dssp CSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEEC------TTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred cccccEEecccc--cceecCcccccccccccccCCC--cccccC------ceeecCCCCcCEEEeCCc--ccEehHhHhh
Confidence 456666665432 2333334567788899888864 344441 223446789999998753 55554 367
Q ss_pred cCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeeccccccccccccCCCCCCCccEEeec
Q 038480 734 FAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYWNALSFPDLLELFVS 800 (850)
Q Consensus 734 ~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~i~ 800 (850)
.+.+|+.+.|.. .++.|.. ..+..+++|+.+.+.+.. ..+ .....+.+|+.+.+.
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~-------~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPE-------SAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCG-------GGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC------
T ss_pred CCCCCCEEEECc--ccCEEhH-------hHhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeC
Confidence 889999999964 3666654 256778999999988642 222 234456778777764
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00012 Score=75.96 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=89.9
Q ss_pred chhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCC-CCCCEEEEEEecC-CCCHHHHHHHHHHHhcCCC
Q 038480 134 GLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTP-NDFDVVIWVVVSK-DMQLERIQEKIGERIGSFG 211 (850)
Q Consensus 134 gr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 211 (850)
|-++.++.+.+.+..++.+...++|+.|+||||+|+.+.+...... .+.+ +.++..+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455677778888776677899999999999999999987531111 2334 34554432 3333332 23443332200
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEcccCCc--cccccccccCCCCCCCeEEEEecCc-hhHhhhccCcceEeccCCChhh
Q 038480 212 NKSLEEKASDIFKILSKKKFLLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRL-VDVCSLMGAQKKFKIECLRDKE 288 (850)
Q Consensus 212 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~l~~L~~~e 288 (850)
..+++-++|+|+++.. ...+.+...+-.....+.+|++|.+ ..+...+.+. .+++.++++++
T Consensus 79 --------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 79 --------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKE 143 (305)
T ss_dssp --------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHH
T ss_pred --------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHH
Confidence 1245679999999743 2344443333233346667766543 3444444555 99999999999
Q ss_pred HHHHHHHHh
Q 038480 289 AWELFLEKV 297 (850)
Q Consensus 289 ~~~lf~~~~ 297 (850)
....+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.75 E-value=0.00035 Score=73.86 Aligned_cols=169 Identities=20% Similarity=0.169 Sum_probs=92.2
Q ss_pred cccchhHHHHHHHHHhcc-----CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEE-----VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.++|.+..++.+...+.. .....+.++|+.|+||||||+.+++.. ...|. ....+-.....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~-------- 91 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQG-------- 91 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHH--------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHH--------
Confidence 468888777777666643 234679999999999999999999986 22221 11111111111
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--ccccccc---cCC------CCC---------CCeEEE-Eec
Q 038480 206 RIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--DLVKVGV---PFP------TSE---------NASKVV-FTT 264 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~---~l~------~~~---------~gs~ii-vTt 264 (850)
+... +...+ .++-++++|++.... ..+.+.. ... .+. ....++ .|+
T Consensus 92 -----------~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 92 -----------DMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp -----------HHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred -----------HHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 1111 11112 234577888885421 1111100 000 000 111222 344
Q ss_pred CchhHhhhcc--CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038480 265 RLVDVCSLMG--AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITI 329 (850)
Q Consensus 265 R~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 329 (850)
+...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 4332211111 1235789999999999999887643221 122566899999999999765443
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=3.7e-05 Score=77.67 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=52.4
Q ss_pred CCCccceeecccccCCCCch--hhhcCCCcceEEEccCCCCCcccChhhcccc--CCCeEeecccccc-cccc-------
Q 038480 505 TCPHLVTLFLAINKLDTITS--NFFDFMPSLRVLNLSKNLSLKQLPSEISKLV--SLQYLNLSETSIK-ELPN------- 572 (850)
Q Consensus 505 ~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~--~L~~L~Ls~~~i~-~LP~------- 572 (850)
++++|++|+|++|.+++++. ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35667777777777666442 44677888888888888 777653 355555 8888888888876 3442
Q ss_pred hhhcCCccceee
Q 038480 573 ELKALTNLKCWN 584 (850)
Q Consensus 573 ~i~~L~~L~~L~ 584 (850)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245556665555
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.71 E-value=2.8e-05 Score=71.26 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=35.5
Q ss_pred cccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999988887753 233457899999999999999999875
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00054 Score=74.07 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=98.5
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+.+++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc--
Confidence 467888888887766531 235678899999999999999999987 222 34444433211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHH-HHhccCcEEEEEcccCCccc----------------cccccccCC--CCCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIF-KILSKKKFLLLLDDVWERID----------------LVKVGVPFP--TSENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~gs 258 (850)
.+...+ ......+. ..-...+.+|++|+++.... +..+...+. ....+.
T Consensus 254 -----------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 -----------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp -----------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred -----------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 001111 11222222 22346789999999974210 011111111 223355
Q ss_pred EEEEecCchhHhhh--cc---CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCSL--MG---AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||.||...+.... +. -+..|.+...+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 67777765554321 11 245788888888888899988775443222333 356777887754
No 207
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.67 E-value=3.9e-05 Score=81.85 Aligned_cols=140 Identities=12% Similarity=0.221 Sum_probs=74.7
Q ss_pred cccceEEEeecccccccccCCCCCCccceeecccccCCCCchhhhc--CCCcceEEEccCCC-C------CcccChhh--
Q 038480 483 KWRDRRRISLLRNKIVALSETPTCPHLVTLFLAINKLDTITSNFFD--FMPSLRVLNLSKNL-S------LKQLPSEI-- 551 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~~~-~------i~~lp~~i-- 551 (850)
.+++++.|++.++.-..++.+ .+++|+.|.+..|.+.......+. .+++|+.|+|+.+. . +..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 345677777766532223333 366777777776654332222222 56777777764210 0 11111122
Q ss_pred ccccCCCeEeeccccccc-ccchhhcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccC
Q 038480 552 SKLVSLQYLNLSETSIKE-LPNELKALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINL 630 (850)
Q Consensus 552 ~~l~~L~~L~Ls~~~i~~-LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 630 (850)
..+++|++|+|++|.+.. .+..+.. ...+++|++|+++.|.+... +.......+.++
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~------------a~~~~~L~~LdLs~n~L~d~----------G~~~L~~~L~~l 306 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLE------------SDILPQLETMDISAGVLTDE----------GARLLLDHVDKI 306 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHH------------CSSGGGCSEEECCSSCCBHH----------HHHHHHTTHHHH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHh------------CccCCCCCEEECCCCCCChH----------HHHHHHhhcccC
Confidence 235677777777766542 1222211 13467788888877764320 011234456788
Q ss_pred CCCCEEEEEeCchhh
Q 038480 631 KHLDVLTVSLRSFCA 645 (850)
Q Consensus 631 ~~L~~L~l~~~~~~~ 645 (850)
++|+.|+++.|.++.
T Consensus 307 ~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 307 KHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCSEEECCSBBCCH
T ss_pred CcceEEECCCCcCCH
Confidence 889999998877643
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.66 E-value=0.00011 Score=88.22 Aligned_cols=154 Identities=12% Similarity=0.200 Sum_probs=83.1
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhcc--CCCC--CCEEEEEEecCCCCHHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFID--TPND--FDVVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.++||+.+++.+++.+.......+.++|.+|+||||+|+.+++.... +... -..++++.++.-..
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----------- 239 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----------- 239 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----------
Confidence 47999999999999997765566789999999999999999987521 1111 12344444322110
Q ss_pred hcCCCCCCHHHHHHHHHHHhc--cCcEEEEEcccCCcc-------cccc--ccccCCCCCCCeEEEEecCchhHh-----
Q 038480 207 IGSFGNKSLEEKASDIFKILS--KKKFLLLLDDVWERI-------DLVK--VGVPFPTSENASKVVFTTRLVDVC----- 270 (850)
Q Consensus 207 l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~~--~~~~l~~~~~gs~iivTtR~~~v~----- 270 (850)
+.............+.+.+. +++.+|++|++.... .++. +..++.. ..+..+|.||......
T Consensus 240 -g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 240 -GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHHHHHTTC
T ss_pred -cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHHhhhccC
Confidence 00001122223333333332 367899999997432 0111 1111111 1233455555433321
Q ss_pred hhc-cCcceEeccCCChhhHHHHHHHHh
Q 038480 271 SLM-GAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 271 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
..+ .-...+.+.+++.++...++....
T Consensus 318 ~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 318 PALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111 112458999999999999987543
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=0.00091 Score=67.80 Aligned_cols=175 Identities=16% Similarity=0.139 Sum_probs=94.7
Q ss_pred CcccchhHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++++.+.+. . ...+-+.|+|+.|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 357898888777655432 1 113458899999999999999999876 2222 3333322111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----------------cccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----------------LVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~gs~ 259 (850)
.............+.......+.++++|+++.... ...+...+. ....+..
T Consensus 84 -----------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 84 -----------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp -----------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred -----------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 00112222223333333445678999999952110 011110010 1233456
Q ss_pred EEEecCchhHh-hhc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCC-CchHHH
Q 038480 260 VVFTTRLVDVC-SLM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAG-LPLALI 327 (850)
Q Consensus 260 iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~ 327 (850)
||.||...+.. ..+ .-...+.+...+.++-.+++...+.......+.. ...+++.+.| .+--+.
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 66677654421 111 1235678888888888888887765433222222 3456777777 554443
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.61 E-value=6e-05 Score=77.23 Aligned_cols=172 Identities=16% Similarity=0.116 Sum_probs=90.3
Q ss_pred CcccchhHHHHHHHHHhcc------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFEE------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...|- .+.++.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH--
Confidence 4578988887777765531 112347799999999999999999986 22221 111111100
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc-----------------ccccccccCCC---CCCC
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI-----------------DLVKVGVPFPT---SENA 257 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~---~~~g 257 (850)
............ .+......++.+|++||++... ....+...+.. ....
T Consensus 83 --------~~~~~~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 83 --------MFVGLGASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp --------SCSSSCSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred --------hhcchHHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 000001111111 1222223467899999996421 11222222211 1123
Q ss_pred eEEEEecCchhHhh--hc---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch
Q 038480 258 SKVVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL 324 (850)
Q Consensus 258 s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 324 (850)
..||.||....... .. .-...+.+..++.++-.+++...+..........+ ..|++.+.|.|-
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 45666776554311 11 12356888999999999999887654322212222 335555666543
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=4.5e-05 Score=73.13 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=71.5
Q ss_pred CCCCccceeecccc-cCCCC----chhhhcCCCcceEEEccCCCCCcc-----cChhhccccCCCeEeeccccccc----
Q 038480 504 PTCPHLVTLFLAIN-KLDTI----TSNFFDFMPSLRVLNLSKNLSLKQ-----LPSEISKLVSLQYLNLSETSIKE---- 569 (850)
Q Consensus 504 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~-----lp~~i~~l~~L~~L~Ls~~~i~~---- 569 (850)
..++.|++|++++| .+... ....+...++|++|+|++| .++. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 45677888888877 65432 1233566778888888888 5553 34445556778888888887763
Q ss_pred -ccchhhcCCccceeecccccccCCCccEEec--cCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEEEeCchhh
Q 038480 570 -LPNELKALTNLKCWNLEQLISSFSDLRVLRM--LDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTVSLRSFCA 645 (850)
Q Consensus 570 -LP~~i~~L~~L~~L~l~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 645 (850)
+...+ ...++|++|++ .+|.+... +.......+...++|+.|+++.|.+..
T Consensus 112 ~l~~~L---------------~~n~~L~~L~L~~~~N~i~~~----------g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEAL---------------QSNTSLIELRIDNQSQPLGNN----------VEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGG---------------GGCSSCCEEECCCCSSCCCHH----------HHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH---------------HhCCCceEEEecCCCCCCCHH----------HHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 22222 34455666666 55654320 012244567777778888888777653
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0013 Score=70.92 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=98.6
Q ss_pred cccchhHHHHHHHHHhc----c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFE----E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 46788888888877642 1 245678899999999999999999987 222 34444332211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----------------cccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----------------LVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~gs~ 259 (850)
.+.+.+...+...+...-...+.+|++|+++.... ...+...+. ....+..
T Consensus 282 -----------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 282 -----------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp -----------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred -----------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 00111111111222223346789999999973210 000111111 1233455
Q ss_pred EEEecCchhHhh--hc---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 260 VVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 260 iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
||.||...+... .+ .-...+.+...+.++-.++|+.++.......+-+ ...|++.+.|.-
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 566775444421 11 2356889999999999999988876544333333 356778888754
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0011 Score=70.56 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=97.4
Q ss_pred cccchhHHHHHHHHHhc----c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFE----E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhhh--
Confidence 46788888888776653 1 234678999999999999999999987 222 23344332111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCccc----------------cccccccC--CCCCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWERID----------------LVKVGVPF--PTSENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l--~~~~~gs 258 (850)
.+.. ..+.....+.+ .-+..+.+|++|+++.... +..+...+ .....+.
T Consensus 255 -----------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 255 -----------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp -----------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred -----------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 0001 11122222222 2245789999999973210 00111111 1223445
Q ss_pred EEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||.||...+.... + .-+..|.+...+.++-.++|+.+........+.++ ..|++.+.|.-
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 56667765554321 1 12356888888889989999888765443333333 56777777754
No 214
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.0037 Score=67.41 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=129.5
Q ss_pred cccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccCCCeE
Q 038480 483 KWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVSLQYL 560 (850)
Q Consensus 483 ~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~L~~L 560 (850)
...+++.+.+.. .++.++ .|.+|.+|+.+.+..+ ++.+....|.++ +|..+.+..+ +..++.......+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 345677777753 455553 4678888888888644 777777778777 4666665543 55555433333468888
Q ss_pred eecccccccccchhhcCCccceeecc--------cccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCC
Q 038480 561 NLSETSIKELPNELKALTNLKCWNLE--------QLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKH 632 (850)
Q Consensus 561 ~Ls~~~i~~LP~~i~~L~~L~~L~l~--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 632 (850)
.+..+ +..+....-.-.+|....+. ..+..+.+++.+.+.......... ....................
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAE--NYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEE--TTEEEETTSSEEEECCTTCC
T ss_pred cCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecc--cceecccccceecccccccc
Confidence 77654 22332222112234333332 223445555555544332110000 00000000000001111222
Q ss_pred CCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCCCcccccccccCCCCCCCC
Q 038480 633 LDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSNLEEFNYVELRTAREPYGF 712 (850)
Q Consensus 633 L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l 712 (850)
+..+.+.... ..... .......+|+.+.+... +..+....+..+..|+.+.+..+ +..+ + ...+..+
T Consensus 196 ~~~~~~~~~~-~~i~~--~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I---~---~~aF~~~ 262 (379)
T 4h09_A 196 GTEFTIPSTV-KTVTA--YGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSI---G---SFLLQNC 262 (379)
T ss_dssp CSEEECCTTC-CEECT--TTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEE---C---TTTTTTC
T ss_pred ccccccccce-eEEee--cccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEe---C---cccccee
Confidence 2222211000 00000 01112234444444221 23333234555666776666543 3323 1 1122345
Q ss_pred CCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccEeecccccccccccc-CCC
Q 038480 713 DSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQCLRLQDLSNLEKIYW-NAL 789 (850)
Q Consensus 713 ~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~ 789 (850)
.+|+.+.+... +..++ .+..+++|+.+.+.+ +.++.|.. ..+..+.+|+.+.|.+ +++.|.. ...
T Consensus 263 ~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~~~aF~ 330 (379)
T 4h09_A 263 TALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEP-------RVFMDCVKLSSVTLPT--ALKTIQVYAFK 330 (379)
T ss_dssp TTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECT-------TTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred ehhcccccccc--ceeccccccccccccccccccc-cccceehh-------hhhcCCCCCCEEEcCc--cccEEHHHHhh
Confidence 66777776542 33333 255677788777765 34566644 2556667777777743 3455443 233
Q ss_pred CCCCccEEee
Q 038480 790 SFPDLLELFV 799 (850)
Q Consensus 790 ~~~~L~~L~i 799 (850)
.|++|+.+.|
T Consensus 331 ~C~~L~~i~i 340 (379)
T 4h09_A 331 NCKALSTISY 340 (379)
T ss_dssp TCTTCCCCCC
T ss_pred CCCCCCEEEE
Confidence 4444444443
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=4e-05 Score=73.23 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 038480 135 LESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFG 211 (850)
Q Consensus 135 r~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 211 (850)
.+..++.+.+++.+ .....+.|+|+.|+||||||+.+++... ....+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 44445555555543 2456899999999999999999998762 11111 12333 34455555544443211
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEcccCC--ccccc--cccccCCC-CCCCeEEEEecC
Q 038480 212 NKSLEEKASDIFKILSKKKFLLLLDDVWE--RIDLV--KVGVPFPT-SENASKVVFTTR 265 (850)
Q Consensus 212 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~~~~~l~~-~~~gs~iivTtR 265 (850)
.. ... +.+. +.-+|||||++. ...|. .+...+.. ...|..||+||.
T Consensus 91 ~~---~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 91 DT---KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp CS---HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HH---HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11 222 2222 456899999973 22222 11111110 124567888886
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.57 E-value=0.00079 Score=74.60 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=100.2
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.++|.+..++++.+.+.. ....-|.|+|.+|+|||++|+.+++.. .. ..+.+.++.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE----- 273 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHH-----
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchH-----
Confidence 478999999988887642 234568899999999999999998875 22 234444321
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc-------------cccccccCC--CCCCCeEEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID-------------LVKVGVPFP--TSENASKVVF 262 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~gs~iiv 262 (850)
+ ...+ ...........+.....+++.+|+||+++.... ...+...+. ....+..||.
T Consensus 274 -l----~~~~---~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 274 -I----MSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp -H----HTSC---TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred -h----hhhh---cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 1 1100 011112222333444456788999999942110 111111111 1223455666
Q ss_pred ecCchhH-hhhc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC-chHHHH
Q 038480 263 TTRLVDV-CSLM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL-PLALIT 328 (850)
Q Consensus 263 TtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~ 328 (850)
||..... ...+ .-...+.+...+.++-.+++...+.......+.. ..++++.+.|. +-.+..
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHH
Confidence 6664432 1111 2234689999999999999998876544232233 35567777774 434443
No 217
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00053 Score=74.06 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=96.6
Q ss_pred cccchhHHHHHHHHHhc----c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFE----E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS--
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh--
Confidence 46889988888877642 1 235678899999999999999999987 222 34444333211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCcEEEEEcccCCcc-------c---------cccccccCC--CCCCCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFK-ILSKKKFLLLLDDVWERI-------D---------LVKVGVPFP--TSENAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------~---------~~~~~~~l~--~~~~gs 258 (850)
.+.+. .+...+.+.. .-...+.+|++|+++... . ...+...+. ....+.
T Consensus 254 -----------~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 254 -----------MYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp -----------SCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred -----------cccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 00011 1112222222 224578999999996310 0 011111111 122344
Q ss_pred EEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||-||...+.... . .-+..+.+...+.++-.++|+.+........+-+ ...|++.+.|.-
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 56667765544321 1 2345788998899888889887764433222223 366777887753
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.49 E-value=0.00056 Score=81.07 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=82.3
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCC---CE-EEEEEecCCCCHHHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDF---DV-VIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~-~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.++||+.+++.+.+.+......-+.++|.+|+|||++|+.+++........+ +. ++.+.. ...
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------g~~ 247 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------GTK 247 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------ccc
Confidence 5899999999999999765556688999999999999999998852111010 11 122221 000
Q ss_pred hcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhH------h-hhccCcceE
Q 038480 207 IGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDV------C-SLMGAQKKF 279 (850)
Q Consensus 207 l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v------~-~~~~~~~~~ 279 (850)
..+.....+...+......++.+|++|.. ......+...+. ....++|.||..... . ....-...+
T Consensus 248 ---~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 248 ---YRGEFEDRLKKVMDEIRQAGNIILFIDAA--IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred ---ccchHHHHHHHHHHHHHhcCCEEEEEcCc--hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 00111111222233333467889999921 111122222222 223556655544331 0 001112568
Q ss_pred eccCCChhhHHHHHHHHhCC
Q 038480 280 KIECLRDKEAWELFLEKVGE 299 (850)
Q Consensus 280 ~l~~L~~~e~~~lf~~~~~~ 299 (850)
.+..++.++...++......
T Consensus 321 ~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ECCCCCHHHHHHHHHHTTTT
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999976644
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.48 E-value=0.00089 Score=73.56 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=97.3
Q ss_pred CcccchhHHHHHHHHHhc---cC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---EV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.++.++++.+.+. .. -.+-|.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 357898887777665542 11 12358899999999999999999986 2222 34444332110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc----------------ccccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI----------------DLVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~--~~~~gs~ 259 (850)
............+.....+.+.+|+||+++... .+..+...+. ....+..
T Consensus 89 ------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 ------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 001111112223344445678999999996421 0111111110 1124566
Q ss_pred EEEecCchhHhh--hcc---CcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 260 VVFTTRLVDVCS--LMG---AQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 260 iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
||.||...+... ... -...+.+...+.++-.++++.++.......+.+ ...+++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 777776655432 111 234788888888888888887775443222222 345788888877
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0017 Score=69.95 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc--
Confidence 468899888888776531 234568899999999999999999987 222 34444443211
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--------c--------cccccccCC--CCCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--------D--------LVKVGVPFP--TSENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~--~~~~gs~ 259 (850)
.+.+.....+...+...-...+.++++|+++... . ...+...+. ....+..
T Consensus 245 -----------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 245 -----------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp -----------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred -----------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 0011111111122222234678999999996310 0 111111111 2234556
Q ss_pred EEEecCchhHhh--hc---cCcceEeccCC-ChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 260 VVFTTRLVDVCS--LM---GAQKKFKIECL-RDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 260 iivTtR~~~v~~--~~---~~~~~~~l~~L-~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
||.||...+... .. .-+..|.+..+ +.++-..+|+.+........+.+ ...+++.+.|.-
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred EEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 666776544321 11 12346777655 45555667776664433222333 356777777753
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.46 E-value=0.00066 Score=70.98 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=38.0
Q ss_pred CcccchhHHHHHHHHHhcc--------------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEE--------------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++|.+..++.+...+.. .....+.++|.+|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999988877753 234568899999999999999999886
No 222
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=2.7e-05 Score=78.67 Aligned_cols=113 Identities=25% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCCCCccce--eecccccCC---CCchhhhcCCCcceEEEccCCCCCccc---ChhhccccCCCeEeecccccccccchh
Q 038480 503 TPTCPHLVT--LFLAINKLD---TITSNFFDFMPSLRVLNLSKNLSLKQL---PSEISKLVSLQYLNLSETSIKELPNEL 574 (850)
Q Consensus 503 ~~~~~~L~~--L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~l~~L~~L~Ls~~~i~~LP~~i 574 (850)
+...+.|.. ++++.|... .........+++|+.|+|++| .+..+ |..+..+++|++|+|++|.|+.+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence 445556666 666666422 222233467899999999999 67654 46677899999999999999877 334
Q ss_pred hcCCccceeecccccccCCCccEEeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEE
Q 038480 575 KALTNLKCWNLEQLISSFSDLRVLRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLT 637 (850)
Q Consensus 575 ~~L~~L~~L~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 637 (850)
..+. .+ +|++|++.+|.+.+. ++. ........+..+++|+.|+
T Consensus 215 ~~l~------------~l-~L~~L~L~~Npl~~~-~~~------~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIK------------GL-KLEELWLDGNSLCDT-FRD------QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGT------------TS-CCSEEECTTSTTGGG-CSS------HHHHHHHHHHHCTTCCEES
T ss_pred hhcc------------cC-CcceEEccCCcCccc-cCc------chhHHHHHHHHCcccCeEC
Confidence 4332 33 677888888875421 000 0011234467777777775
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=9.1e-05 Score=70.97 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred hhhhcCCCcceEEEccCCCCCc-----ccChhhccccCCCeEeecccccccc-cchhhcCCccceeecccccccCCCccE
Q 038480 524 SNFFDFMPSLRVLNLSKNLSLK-----QLPSEISKLVSLQYLNLSETSIKEL-PNELKALTNLKCWNLEQLISSFSDLRV 597 (850)
Q Consensus 524 ~~~~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~l~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~~~i~~l~~L~~ 597 (850)
...+...+.|+.|+|++|..++ .+...+...++|++|+|++|.|..- ...+. ..+...++|++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~-----------~~L~~n~~L~~ 97 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-----------EMLKVNNTLKS 97 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH-----------HHHHHCSSCCE
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH-----------HHHHhCCCcCE
Confidence 3457788999999999983443 2455666778999999999988631 01111 12234566788
Q ss_pred EeccCCCCCCCCCCCcccccCCccccHHHhccCCCCCEEEE--EeCchhhh--hhhhcCCCccccceEEEeeecC
Q 038480 598 LRMLDCGFTADPVPEDSVLFGGSEILVEELINLKHLDVLTV--SLRSFCAL--QKLWSSPKLQSSTKSLQLRECK 668 (850)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l--~~~~~~~l--~~l~~~~~~~~~L~~L~l~~~~ 668 (850)
|++.+|.+... +.......+...++|+.|++ +.|.++.- ..+.......++|+.|++++|.
T Consensus 98 L~L~~N~i~~~----------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 98 LNVESNFISGS----------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EECCSSCCCHH----------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred EECcCCcCCHH----------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 88888875421 01224566788889999999 77776542 2232222334689999998876
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00028 Score=68.61 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccC----CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 038480 137 STLDKVWRCFEEV----QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGN 212 (850)
Q Consensus 137 ~~~~~l~~~l~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 212 (850)
..++.+.+++... ....+.|+|++|+|||+||+.+++.. . .....++|++++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 3445555555442 12688999999999999999999987 2 223345666543 344444433221
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEcccCC
Q 038480 213 KSLEEKASDIFKILSKKKFLLLLDDVWE 240 (850)
Q Consensus 213 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (850)
......... +.+. -+|||||++.
T Consensus 104 ~~~~~~~~~----~~~~-~~lilDei~~ 126 (202)
T 2w58_A 104 QTMNEKLDY----IKKV-PVLMLDDLGA 126 (202)
T ss_dssp CCCHHHHHH----HHHS-SEEEEEEECC
T ss_pred chHHHHHHH----hcCC-CEEEEcCCCC
Confidence 122222222 3322 3899999964
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.0013 Score=78.19 Aligned_cols=155 Identities=16% Similarity=0.225 Sum_probs=88.6
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCC---CCCEEEEE-EecCCCCHHHHHHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN---DFDVVIWV-VVSKDMQLERIQEKIGE 205 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~wv-~~s~~~~~~~~~~~i~~ 205 (850)
..++||+.+++.+++.+......-+.|+|.+|+||||+|+.+++......- .....+|. ..+.-.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----------
Confidence 357999999999999998766667889999999999999999987521110 12222221 111100
Q ss_pred HhcCCCCCCHHHHHHHHHHHhc-cCcEEEEEcccCCcc--------c--cccccccCCCCCCCeEEEEecCchhHhhhc-
Q 038480 206 RIGSFGNKSLEEKASDIFKILS-KKKFLLLLDDVWERI--------D--LVKVGVPFPTSENASKVVFTTRLVDVCSLM- 273 (850)
Q Consensus 206 ~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~--~~~~~~~l~~~~~gs~iivTtR~~~v~~~~- 273 (850)
.+.......++....+.+.+. .++.+|++|+++... . ...+..++.. ..+..+|.+|...+.....
T Consensus 255 -~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~ 332 (758)
T 1r6b_X 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCC
T ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhh
Confidence 000011123333334444343 457899999997431 1 1112222222 2345566666544321111
Q ss_pred ------cCcceEeccCCChhhHHHHHHHHh
Q 038480 274 ------GAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 274 ------~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
.....+.+..++.++..+++...+
T Consensus 333 ~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred cCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 112368899999999988887654
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.00033 Score=73.42 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=43.4
Q ss_pred cccchhHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 131 TIVGLESTLDKVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 4689999988888877542 135799999999999999999998762 11123455665543
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.33 E-value=0.012 Score=63.27 Aligned_cols=260 Identities=10% Similarity=0.083 Sum_probs=141.7
Q ss_pred cccccccceEEEeeccccccccc--CCCCCCccceeecccccCCCCchhhhcCCCcceEEEccCCCCCcccChhhccccC
Q 038480 479 PEVRKWRDRRRISLLRNKIVALS--ETPTCPHLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKNLSLKQLPSEISKLVS 556 (850)
Q Consensus 479 ~~~~~~~~l~~L~l~~n~~~~l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~l~~ 556 (850)
..+.+|.+|+.+.+..+ +..+. .|.+| +|..+.+..+ ++.+....|..+ +|+.+.+..+ +..+......-.+
T Consensus 63 ~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~--~~~i~~~~F~~~~ 136 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA--TTEIGNYIFYNSS 136 (379)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCC
T ss_pred HHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc--cccccccccccce
Confidence 35678889999999744 55553 35666 6777777644 667777778765 7999998765 3333332222234
Q ss_pred CCeEeecccccccc-cchhhcCCccceeecc---------------------cccccCCCccEEeccCCCCCCCCCCCcc
Q 038480 557 LQYLNLSETSIKEL-PNELKALTNLKCWNLE---------------------QLISSFSDLRVLRMLDCGFTADPVPEDS 614 (850)
Q Consensus 557 L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~l~---------------------~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 614 (850)
|....+..+ ++.+ ...+..+.+|....+. ..+.....+..+.+....
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 205 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV---------- 205 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC----------
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce----------
Confidence 555555433 2222 2234455555555443 011122222222222111
Q ss_pred cccCCccccHHHhccCCCCCEEEEEeCchhhhhhhhcCCCccccceEEEeeecCCCCccccccccCcCCcCeeeeccCCC
Q 038480 615 VLFGGSEILVEELINLKHLDVLTVSLRSFCALQKLWSSPKLQSSTKSLQLRECKDSKSLNISYLADLKHLDKLDFAYCSN 694 (850)
Q Consensus 615 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 694 (850)
............+|+.+.+..+ ...+.. .....+..|+.+.+..+ ++.+....+..+.+|+.+.+...
T Consensus 206 -----~~i~~~~f~~~~~l~~i~~~~~-~~~i~~--~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-- 273 (379)
T 4h09_A 206 -----KTVTAYGFSYGKNLKKITITSG-VTTLGD--GAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-- 273 (379)
T ss_dssp -----CEECTTTTTTCSSCSEEECCTT-CCEECT--TTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--
T ss_pred -----eEEeecccccccccceeeeccc-eeEEcc--ccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--
Confidence 1111223344556666555321 111111 11223456777766432 44444455677888888888643
Q ss_pred CcccccccccCCCCCCCCCCccEEecccCCCCCCCc--ccccCCCCceEEeecccccceeccccccCCCCCCCcCCCccE
Q 038480 695 LEEFNYVELRTAREPYGFDSLQRVTIDCCKKLKEVT--WLAFAPNLKFVHIERCYEMDEIISVWKLGEVPGLNPFAKLQC 772 (850)
Q Consensus 695 l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~ 772 (850)
+..+. ...+..+.+|+.+.+.++ .++.++ .+..+++|+.+.|.. .++.|.. ..+..+.+|+.
T Consensus 274 i~~i~------~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-------~aF~~C~~L~~ 337 (379)
T 4h09_A 274 VKTVP------YLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-------YAFKNCKALST 337 (379)
T ss_dssp CSEEC------TTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCC
T ss_pred ceecc------cccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-------HHhhCCCCCCE
Confidence 44331 123346789999998765 455554 367789999999864 3677754 25666777777
Q ss_pred eeccccccccccc
Q 038480 773 LRLQDLSNLEKIY 785 (850)
Q Consensus 773 L~L~~~~~l~~i~ 785 (850)
+.|.. +++.|.
T Consensus 338 i~ip~--~v~~I~ 348 (379)
T 4h09_A 338 ISYPK--SITLIE 348 (379)
T ss_dssp CCCCT--TCCEEC
T ss_pred EEECC--ccCEEc
Confidence 77743 344443
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.00016 Score=66.40 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
.-..++|+|..|+|||||++.+++.. .. ..+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHHH
Confidence 45689999999999999999999987 22 222 256665443
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.22 E-value=0.00061 Score=69.50 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 131 TIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
.++|.+..+.++.+.+.. .....|.|+|..|+|||++|+.+++.. . ... ...+.++++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~-~-~~~-~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS-S-RWQ-GPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS-T-TTT-SCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc-C-ccC-CCeEEEecCCC
Confidence 478999888888776643 233567799999999999999999875 2 111 22455665543
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.21 E-value=0.0019 Score=71.44 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=35.7
Q ss_pred CcccchhHHHHHHHHHh---ccC--CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCF---EEV--QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l---~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 46899998887655444 333 23568899999999999999999876
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.00 E-value=0.0092 Score=60.76 Aligned_cols=146 Identities=15% Similarity=0.110 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC--
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ-- 195 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-- 195 (850)
.+.|.++.++++.+.+.. .-.+-+.++|+.|+||||||+.++... . . ..+.+..+.-.+
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNMY 84 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSST
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhhh
Confidence 467888888777665421 111238999999999999999999876 2 1 244554332211
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCccc---------ccc----ccccCCCC--CCCeE
Q 038480 196 LERIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERID---------LVK----VGVPFPTS--ENASK 259 (850)
Q Consensus 196 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~~~----~~~~l~~~--~~gs~ 259 (850)
..+ .......+.+.. ...+.++++|+++.... ... +...+..+ ....-
T Consensus 85 ~~~----------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 VGE----------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp THH----------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred hhH----------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 000 011122222222 34678999999964210 000 11111111 12344
Q ss_pred EEEecCchhHhhhc-----cCcceEeccCCChhhHHHHHHHHhC
Q 038480 260 VVFTTRLVDVCSLM-----GAQKKFKIECLRDKEAWELFLEKVG 298 (850)
Q Consensus 260 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~ 298 (850)
++.+|..+++.... .-...+.+...+.++-.++++....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 55567666663221 2346788999999999999988764
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.00063 Score=80.64 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred CcccchhHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHH
Q 038480 130 PTIVGLESTLDKVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQ 200 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 200 (850)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+++... ..-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45799999998888877531 223699999999999999999998862 222234566655432110
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhc-cCcEEEEEcccCCcc--ccccccc-----cCCC------CCCCeEEEEecCc
Q 038480 201 EKIGERIGSFGNKSLEEKASDIFKILS-KKKFLLLLDDVWERI--DLVKVGV-----PFPT------SENASKVVFTTRL 266 (850)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--~~~~~~~-----~l~~------~~~gs~iivTtR~ 266 (850)
... ...+.+.++ ...-+|+||+++... ....+.. .+.. .....+||.||..
T Consensus 565 -----------~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 -----------STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 111122222 233489999997431 1111111 1111 1234678888862
Q ss_pred -----hhH----hhhc------cCcceEeccCCChhhHHHHHHHH
Q 038480 267 -----VDV----CSLM------GAQKKFKIECLRDKEAWELFLEK 296 (850)
Q Consensus 267 -----~~v----~~~~------~~~~~~~l~~L~~~e~~~lf~~~ 296 (850)
..+ ...+ .-...+.+.+++.++-..++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 1111 11247888899888887777654
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.98 E-value=0.00095 Score=69.37 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 578999888888887754 334467799999999999999999865
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.98 E-value=0.0022 Score=74.65 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=96.6
Q ss_pred cccchhHHHHHHHHHhc----c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFE----E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 35688877777766542 1 134578999999999999999999876 222 34444321
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--------c-----cccccccCC--CCCCCeEEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--------D-----LVKVGVPFP--TSENASKVVF 262 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~--~~~~gs~iiv 262 (850)
+. +.........+...+....+..+.+|++|+++... + ...+...+. ....+..||.
T Consensus 274 -----l~---sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 274 -----IM---SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -----HH---SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred -----hh---cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11 11111122222223333445678999999997421 0 001111110 1122344555
Q ss_pred ecCchhHh-hhc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCch
Q 038480 263 TTRLVDVC-SLM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPL 324 (850)
Q Consensus 263 TtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 324 (850)
||...+.. ..+ .-...+.+...+.++-.++++.+........+.+ ...|++++.|.--
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 66544332 111 1245789999999999999988775443222333 4667888887643
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.94 E-value=0.0061 Score=62.86 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999987
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.87 E-value=0.0053 Score=69.21 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=75.8
Q ss_pred cccchhHHHHHHHHHhc------cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 131 TIVGLESTLDKVWRCFE------EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
.++|.+..+..+.+.+. .....++.++|++|+||||||+.++... ...| .-+.++...+...+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHHH
Confidence 46888877777655442 1245689999999999999999999876 2222 2333333222222211111
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc------cccccccCCC--------C-------CCCeEEEEe
Q 038480 205 ERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID------LVKVGVPFPT--------S-------ENASKVVFT 263 (850)
Q Consensus 205 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~--------~-------~~gs~iivT 263 (850)
...+. ........+.. .....-+++||+++.... ...+...+.. . .....||.|
T Consensus 156 ~~ig~----~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 156 TYVGA----MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred HHhcc----CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 11111 01111111222 122333889999974311 1222221210 0 033456666
Q ss_pred cCchhH-----hhhccCcceEeccCCChhhHHHHHHHHh
Q 038480 264 TRLVDV-----CSLMGAQKKFKIECLRDKEAWELFLEKV 297 (850)
Q Consensus 264 tR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 297 (850)
|..... .+.+ ..+.+.+++.++-..++..+.
T Consensus 231 tN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 654332 2222 468899999988888877654
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.86 E-value=0.013 Score=59.83 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=88.7
Q ss_pred CcccchhHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..++++.+... . .-.+-+.|+|+.|+||||||+.++... . . ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~--~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C--C---CEEEecHH------
Confidence 457898877666654432 1 011238999999999999999999876 2 1 22333321
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc------------c----cccccccCCCCCC--Ce
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI------------D----LVKVGVPFPTSEN--AS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~--gs 258 (850)
++ ..... . ........+.+.. ...+.++|+|+++... . ...+...+..+.. ..
T Consensus 108 ~~----~~~~~---~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 108 DF----VEMFV---G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp HH----HHSTT---T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred HH----HHHHh---h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 11000 0 0111122222222 2456899999995210 0 1111111222221 23
Q ss_pred EEEEecCchhHhhh-----ccCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCSL-----MGAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.++.||..+++... ..-...+.+...+.++-.+++...+.......+.. ...+++.+.|..
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 34446665554221 12345788999999888888887764332222222 345677777754
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.80 E-value=0.013 Score=64.82 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=92.4
Q ss_pred CcccchhHHHHHHHHHhc---cC---------CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---EV---------QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..+.++.+... .. -.+-|.|+|++|+||||||+.+++.. ... .+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHH--
Confidence 457898887776655432 21 12248999999999999999999876 222 34444432111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCcEEEEEcccCCcc------------c----cccccccCCCC--C
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILS----KKKFLLLLDDVWERI------------D----LVKVGVPFPTS--E 255 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~--~ 255 (850)
.........+...++ ..+.++++|+++... . ...+...+..+ .
T Consensus 103 ---------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 ---------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp ---------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred ---------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 001112223333333 235799999995321 0 11121111111 2
Q ss_pred CCeEEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 256 NASKVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 256 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.+..|+.||..+++... . .-...+.+...+.++-.++++.++.......+.. ...|++.+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 23445556666655321 1 1235788999999988889887764322121222 355777777765
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.70 E-value=0.033 Score=55.94 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=88.0
Q ss_pred CcccchhHHHHHHHHHhc---c---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 130 PTIVGLESTLDKVWRCFE---E---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
..++|.+..+.++.+... . .-.+-+.|+|+.|+||||||+.+++.. . .. .+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~~---~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--VP---FITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--CC---EEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CC---EEEeeHH------
Confidence 357888776666544332 1 011238999999999999999999876 2 21 2333321
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHh-ccCcEEEEEcccCCcc------------c----cccccccCCCCC--CCe
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKIL-SKKKFLLLLDDVWERI------------D----LVKVGVPFPTSE--NAS 258 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~--~gs 258 (850)
++ .... ..........+.+.. ...+.++++|+++... . ...+...+..+. ...
T Consensus 84 ~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 84 DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp HH----HHSC----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred HH----HHHH----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 1100 000111122233332 2456899999995211 0 111111111111 223
Q ss_pred EEEEecCchhHhhh--c---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 259 KVVFTTRLVDVCSL--M---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 259 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.++.||..+++... . .-...+.+...+.++-.++++..+.......+.. ...+++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 34446666655321 1 2335788999999888888887764332222222 345677777654
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.67 E-value=0.0085 Score=70.94 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=92.8
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.++|.+..++++.+++.. .....|.|+|.+|+||||||+.+++.. ... .+.+..+.-.
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~~l~--- 275 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIM--- 275 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHHHHS---
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEchHhh---
Confidence 478988888888777642 234579999999999999999998875 222 2344321110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCccc----------------cccccccCCCCCCCeEEE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERID----------------LVKVGVPFPTSENASKVV 261 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~gs~ii 261 (850)
+.............+.......+.++++|++..... +..+..-+. ...+..+|
T Consensus 276 ----------~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI 344 (806)
T 1ypw_A 276 ----------SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVM 344 (806)
T ss_dssp ----------SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEE
T ss_pred ----------hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEe
Confidence 000111111222233334456788999999953210 111111111 12234555
Q ss_pred EecCchhHh-hhc----cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCc
Q 038480 262 FTTRLVDVC-SLM----GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLP 323 (850)
Q Consensus 262 vTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 323 (850)
.||...+-. ..+ .-...+.+...+.++-.+++...+..........+ .+++..+.|..
T Consensus 345 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred cccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 566543321 111 12246788888999999999877654432222233 44556666654
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.58 E-value=0.0018 Score=66.31 Aligned_cols=69 Identities=17% Similarity=0.391 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVV--SKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILSK 228 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 228 (850)
.+++.|+|++|+||||||.+++... .. .++|+++ .+..+ .. ..+.++....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v~-------------~~-~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPLS-------------GY-NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSST-------------TC-BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhhh-------------hh-hcCHHHHHHHHHHHHhh
Confidence 3567899999999999999998752 11 2345665 22211 11 13456666667777777
Q ss_pred CcEEEEEcccCC
Q 038480 229 KKFLLLLDDVWE 240 (850)
Q Consensus 229 k~~LlVlDdv~~ 240 (850)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 67 999999943
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0059 Score=59.93 Aligned_cols=83 Identities=22% Similarity=0.251 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc-----------CCCCCCH---
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG-----------SFGNKSL--- 215 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----------~~~~~~~--- 215 (850)
.-.++.|+|.+|+||||||..++. . . -..++|++.....+...+.+ +.+.++ .....+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 3 1 24688888777556555443 332221 1111122
Q ss_pred HHHHHHHHHHhccCcEEEEEcccC
Q 038480 216 EEKASDIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~ 239 (850)
.+....++..+..+.-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 233444444444457788999884
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.53 E-value=0.0053 Score=64.57 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 3469999999999999999999887621 22357889887777654 4455543 2344566666666
Q ss_pred HHHhc-cCcEEEEEcccCC
Q 038480 223 FKILS-KKKFLLLLDDVWE 240 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (850)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 66554 4566899999843
No 244
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.43 E-value=0.016 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.25 E-value=0.0095 Score=62.86 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3468999999999999999999876521 22458899988776653 2444543 1233455555555
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
....+ .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 55554 346699999984
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.011 Score=60.26 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=55.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHH-HHHHHH
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEK-ASDIFK 224 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~-~~~l~~ 224 (850)
++-|.|.+|+||||||.+++.... ....-..++||+..+.++.. .+++++. ....+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999999887762 11123578999988888764 3666665 223445554 333322
Q ss_pred H--h-ccCcEEEEEcccCC
Q 038480 225 I--L-SKKKFLLLLDDVWE 240 (850)
Q Consensus 225 ~--l-~~k~~LlVlDdv~~ 240 (850)
. + .++.-+||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 35678999999943
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.20 E-value=0.0061 Score=72.24 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=42.8
Q ss_pred CcccchhHHHHHHHHHhcc---------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 130 PTIVGLESTLDKVWRCFEE---------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+.. . ...+.+.++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~~ 524 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSEY 524 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGGC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechhh
Confidence 4578999988888777652 123478999999999999999999876 1 23455665543
No 248
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.19 E-value=0.029 Score=59.30 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=98.9
Q ss_pred HHHhccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 038480 143 WRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDI 222 (850)
Q Consensus 143 ~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l 222 (850)
.+.+...-.++..++|..|.||++.|+.+.+... ...|+....+.+....++.++...+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------- 70 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA----------------- 70 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH-----------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC-----------------
Confidence 3344434456899999999999999999988651 223433222233333444433332211
Q ss_pred HHHhccCcEEEEEcccCC---ccccccccccCCCCCCCeEEEEecCc-------hhHhhhcc-CcceEeccCCChhhHHH
Q 038480 223 FKILSKKKFLLLLDDVWE---RIDLVKVGVPFPTSENASKVVFTTRL-------VDVCSLMG-AQKKFKIECLRDKEAWE 291 (850)
Q Consensus 223 ~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~gs~iivTtR~-------~~v~~~~~-~~~~~~l~~L~~~e~~~ 291 (850)
.-+-+++-++|+|+++. ...++.+...+.....++.+|++|.. ..+...+. ....++..+++.++...
T Consensus 71 -~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 -MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp -HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred -cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 12235677889999865 23445554444333456777766532 23333333 34678999999999998
Q ss_pred HHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 038480 292 LFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALIT 328 (850)
Q Consensus 292 lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 328 (850)
.+.+.+...+...+ ++.+..+++.++|.+.++..
T Consensus 150 ~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 88887644332222 45678899999998887754
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.17 E-value=0.0098 Score=62.82 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++... ++.++. ....+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 3468999999999999999998877521 223689999888776432 344443 1223445555555
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
....+ .+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 44443 445589999983
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.17 E-value=0.0054 Score=73.51 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=36.7
Q ss_pred cccchhHHHHHHHHHhccC---------CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEEV---------QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888887777431 23578999999999999999999876
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.16 E-value=0.011 Score=62.58 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3458899999999999999998877521 22468999988877654 2344443 1234556666666
Q ss_pred HHHhcc-CcEEEEEcccC
Q 038480 223 FKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~ 239 (850)
....+. +.-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 666553 45599999984
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.11 E-value=0.018 Score=57.42 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhcC-----------CCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIGS-----------FGNKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~~ 214 (850)
.-.++.|+|.+|+|||||+..++... .... .-..++|+.....++...+. ++++.++. ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 34689999999999999999998863 1111 23578999887765554433 33344432 11222
Q ss_pred HHHH---HHHHHHHhc-cCcEEEEEcccC
Q 038480 215 LEEK---ASDIFKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 215 ~~~~---~~~l~~~l~-~k~~LlVlDdv~ 239 (850)
..+. ...+.+.+. .+.-+||+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2322 233444443 466788888884
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.07 E-value=0.019 Score=60.18 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhcC-----------CCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIGS-----------FGNKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~~ 214 (850)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++...+.+ +++.++. ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 34689999999999999999998764 1110 135789999888877766553 3454433 11112
Q ss_pred HH---HHHHHHHHHhc--cCcEEEEEccc
Q 038480 215 LE---EKASDIFKILS--KKKFLLLLDDV 238 (850)
Q Consensus 215 ~~---~~~~~l~~~l~--~k~~LlVlDdv 238 (850)
.+ +....+...++ .+.-+||+|.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22 23344444443 34567778877
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.93 E-value=0.039 Score=58.17 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++...+.. +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 44689999999999999999998864 1111 235789999988877766543 344443
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.82 E-value=0.011 Score=61.29 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhccC---CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 135 LESTLDKVWRCFEEV---QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 135 r~~~~~~l~~~l~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+....+.+.+++... ....+.|+|..|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555666542 24688899999999999999999976
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.79 E-value=0.052 Score=58.54 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 257
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.74 E-value=0.0027 Score=57.67 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|++..++++.+.+.. ....-|.|+|..|+|||++|+.+.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468998888888877653 233457799999999999999998764
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.72 E-value=0.0043 Score=58.74 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=59.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC---CCHHHHHHHHHHHh---cC---CCCCC-------H
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD---MQLERIQEKIGERI---GS---FGNKS-------L 215 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l---~~---~~~~~-------~ 215 (850)
..|.|++..|.||||.|--..-+. ..+--.+.++..-+. .....++..+.-.+ +. +...+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 456677777799999999888876 233334555644332 23333443331000 00 11111 1
Q ss_pred HHHHHHHHHHhccCcE-EEEEcccCCc-----cccccccccCCCCCCCeEEEEecCch
Q 038480 216 EEKASDIFKILSKKKF-LLLLDDVWER-----IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 216 ~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
.......++.+.+.+| |||||++-.. ...+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1222344555655555 9999999421 22233322233334456799999975
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.51 E-value=0.014 Score=56.40 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHhcc---CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 134 GLESTLDKVWRCFEE---VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 134 gr~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|++.++++.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355667777777754 345799999999999999999998765
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.49 E-value=0.085 Score=57.21 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC-----CCCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS-----FGNKSLEEKASDIF 223 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~l~ 223 (850)
..++|.++|.+|+||||++..++... ..... ..+.-+++.. .....+.+.......+. ....+..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL-REKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH-HHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 46799999999999999999998877 22212 2355555442 22333334444444443 11234445444444
Q ss_pred HHhccCcE-EEEEccc
Q 038480 224 KILSKKKF-LLLLDDV 238 (850)
Q Consensus 224 ~~l~~k~~-LlVlDdv 238 (850)
+.++.+.| ++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 44443333 6777775
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.063 Score=56.18 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC-----CCCC
Q 038480 141 KVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS-----FGNK 213 (850)
Q Consensus 141 ~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-----~~~~ 213 (850)
++++.+.. .+-..++|+|..|+|||||++.+.+...+....+++ +++-+.+.. ...+ +.+.+.. ....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~----~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTE----MQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHH----HHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHH----HHHHhCeEEEEeCCCC
Confidence 34455443 345689999999999999999988764222234444 356666543 2232 2333211 1111
Q ss_pred CHHHHH------HHHHHHh--ccCcEEEEEcccC
Q 038480 214 SLEEKA------SDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 214 ~~~~~~------~~l~~~l--~~k~~LlVlDdv~ 239 (850)
...... -.+.+++ +++.+||++||+.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 111111 1122233 5899999999994
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.37 E-value=0.034 Score=58.20 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC----------CCC----CEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP----------NDF----DVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----------~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-.++.|.|.+|+||||+|.+++... ... ..- ..++|++....++..++.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 34689999999999999999988753 111 111 5789999888877766654 344554
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.31 E-value=0.063 Score=55.12 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS-----FGNKSLEEKASDIFK 224 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~l~~ 224 (850)
..+++++|.+|+||||++..++.... . .-..+.++..... ......++...+..+. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-K--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-H--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56899999999999999999988762 1 1234566655432 2233334445555444 122345555544455
Q ss_pred HhccCcE-EEEEccc
Q 038480 225 ILSKKKF-LLLLDDV 238 (850)
Q Consensus 225 ~l~~k~~-LlVlDdv 238 (850)
.++.+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 5543344 7788876
No 264
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.28 E-value=0.049 Score=52.52 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=43.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH-----------hcCCCCCCHHHHHHH
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER-----------IGSFGNKSLEEKASD 221 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-----------l~~~~~~~~~~~~~~ 221 (850)
+|.|.|++|+||||.|+.+.+++ .| ..+ +..+++++-++. +........+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~---~~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GF---VHI------STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CC---EEE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CC---eEE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 68899999999999999999987 12 222 233444433221 111223344445566
Q ss_pred HHHHhccCcEEEEEcccC
Q 038480 222 IFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 222 l~~~l~~k~~LlVlDdv~ 239 (850)
+.+.+..... +|||++-
T Consensus 68 v~~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHHHCCSSSC-EEEESCC
T ss_pred HHHhhccCCc-eEecCCc
Confidence 6777755443 5789884
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.27 E-value=0.077 Score=56.81 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccC---CCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDT---PNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....+....+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 34699999999999999999876432110 1133578999887766655443 3555554
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.23 E-value=0.073 Score=52.34 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCC----CCCCEEEEEEecCCCCH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTP----NDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~ 196 (850)
.-.+++|+|+.|+|||||++.++... ... ..-..++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCH
Confidence 34699999999999999999998753 111 12346788876654443
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.18 E-value=0.049 Score=57.43 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCC----CCEEEEEEecCCCCHHHHHHHHHHHhcC-----------CCCCC
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPND----FDVVIWVVVSKDMQLERIQEKIGERIGS-----------FGNKS 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~~ 214 (850)
.-.++.|+|..|+|||||++.++... ..... -..++|++....+....+ ..+++..+. ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45699999999999999999998765 11101 135689987766544333 334443322 01111
Q ss_pred ---HHHHHHHHHHHhc------cCcEEEEEcccCC
Q 038480 215 ---LEEKASDIFKILS------KKKFLLLLDDVWE 240 (850)
Q Consensus 215 ---~~~~~~~l~~~l~------~k~~LlVlDdv~~ 240 (850)
..+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1233344444454 3677888888843
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.10 E-value=0.018 Score=55.86 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 137 STLDKVWRCFEE--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 137 ~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+-+++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556666543 356799999999999999999998876
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.07 E-value=0.055 Score=55.55 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGSF--GNKSLEEKASDIFKIL 226 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~l~~~l 226 (850)
...+++|+|.+|+||||++..++... ..... ..+..+.... .....+.+....+..+.. ...+..++...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 35699999999999999999998776 21111 2355555432 223333344444433331 1223333333333 23
Q ss_pred ccCcEEEEEccc
Q 038480 227 SKKKFLLLLDDV 238 (850)
Q Consensus 227 ~~k~~LlVlDdv 238 (850)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457888844
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.04 E-value=0.1 Score=56.20 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.02 E-value=0.099 Score=54.30 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.-.++.|.|.+|+||||+|.+++.... ..+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999999987762 222 578888765 45666766666543
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.96 E-value=0.099 Score=56.56 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhcC--------CCCCCHHHH----
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGS--------FGNKSLEEK---- 218 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~---- 218 (850)
..++|+|..|+|||||+..+.... . ....+..+++.+.+.. ...++++++...=.. .........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~-~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-A-QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-H-HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-h-hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999988775 1 1122445666666553 455555555432100 111111111
Q ss_pred --HHHHHHHh---ccCcEEEEEcccC
Q 038480 219 --ASDIFKIL---SKKKFLLLLDDVW 239 (850)
Q Consensus 219 --~~~l~~~l---~~k~~LlVlDdv~ 239 (850)
.-.+.+++ ++++.|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11233333 4789999999994
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.91 E-value=0.014 Score=54.92 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 274
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.90 E-value=0.091 Score=56.56 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH--HHHHHHHHHhcC-----CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE--RIQEKIGERIGS-----FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~-----~~~~~~~~~~~~l 222 (850)
...++.|+|.+|+||||++..++... ... -..+..+.+ ..+... ..+.......+. ....+..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH-HTT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 34689999999999999999999887 222 223455554 223322 223444444443 1223444444444
Q ss_pred HHHhccCcE-EEEEccc
Q 038480 223 FKILSKKKF-LLLLDDV 238 (850)
Q Consensus 223 ~~~l~~k~~-LlVlDdv 238 (850)
.+.++.+.| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 444432333 6667754
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.89 E-value=0.0065 Score=59.37 Aligned_cols=109 Identities=16% Similarity=-0.052 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCC-C---CCCHHHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSF-G---NKSLEEKASDIFKI 225 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~---~~~~~~~~~~l~~~ 225 (850)
.-.++.|+|..|+||||++..+.++.. ..-..++.+....... ....+++.++.. . .....+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999988872 2222344443333211 112344444431 1 12233444555544
Q ss_pred hccCcE-EEEEcccCCc--cccccccccCCCCCCCeEEEEecCch
Q 038480 226 LSKKKF-LLLLDDVWER--IDLVKVGVPFPTSENASKVVFTTRLV 267 (850)
Q Consensus 226 l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~iivTtR~~ 267 (850)
+.+.++ +||+|.+... ...+.+. .+.+ .|..||+|-++.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 444444 9999999632 2222221 1111 266788888843
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.89 E-value=0.065 Score=55.17 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH--HHHHHHHHHHhcC---C--CCCCHHHH-HHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL--ERIQEKIGERIGS---F--GNKSLEEK-ASD 221 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~---~--~~~~~~~~-~~~ 221 (850)
...+|.|+|.+|+||||++..++... ... -..+.++... .+.. .+-+...++..+. . ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45799999999999999999998876 211 2235555543 2222 2223344555443 1 12223222 223
Q ss_pred HHHHhccCcEEEEEcccC
Q 038480 222 IFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 222 l~~~l~~k~~LlVlDdv~ 239 (850)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444454555588888763
No 277
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.88 E-value=0.063 Score=52.88 Aligned_cols=47 Identities=28% Similarity=0.274 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEK 202 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 202 (850)
-.+++|.|..|+|||||++.++..... .-..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHH
Confidence 368999999999999999999866521 112456665443 34444433
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.88 E-value=0.017 Score=67.28 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=79.6
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 130 PTIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
..+.|.++.++++.+.+.- ...+-|.++|++|.|||.+|+.+++.. ... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEecc----
Confidence 3457888888887766531 123457899999999999999999986 222 233321
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc--------c--------cccccccCC--CCCCCe
Q 038480 197 ERIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI--------D--------LVKVGVPFP--TSENAS 258 (850)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~--~~~~gs 258 (850)
.++ +..+...+...+...+...-+..+.+|+||+++... . ...+...+. ....+.
T Consensus 545 ~~l-------~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 545 PEL-------LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp HHH-------HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred chh-------hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCE
Confidence 111 112223344333333333335679999999996421 0 011111111 112233
Q ss_pred EEEEecCchhHhh--hc---cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCC
Q 038480 259 KVVFTTRLVDVCS--LM---GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGL 322 (850)
Q Consensus 259 ~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 322 (850)
-||-||...+... .+ .-...+.+...+.++-.++|+.+........+.++ ..+++.+.|.
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred EEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 3333554333311 11 23467788777777778888777654432222233 4555666553
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.82 E-value=0.016 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.63 E-value=0.031 Score=54.90 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 137 STLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 137 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444455555567899999999999999999998875
No 281
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.57 E-value=0.022 Score=59.92 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35799999999988888764 357899999999999999999876
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.021 Score=54.98 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.50 E-value=0.04 Score=57.32 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHhc----cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 133 VGLESTLDKVWRCFE----EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 133 vgr~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445556666666653 3456679999999999999999988765
No 284
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.45 E-value=0.27 Score=53.02 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=61.0
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHH--hc------C--
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGER--IG------S-- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~--l~------~-- 209 (850)
+++.+.. .+-.-++|.|..|+|||+|++.+.+... +.+-+.++++-+.+.. ...++.+++.+. +. .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4455543 3456899999999999999999988751 3345677888777653 466777777654 21 1
Q ss_pred ----CCCCCHHH------HHHHHHHHh---ccCcEEEEEcccC
Q 038480 210 ----FGNKSLEE------KASDIFKIL---SKKKFLLLLDDVW 239 (850)
Q Consensus 210 ----~~~~~~~~------~~~~l~~~l---~~k~~LlVlDdv~ 239 (850)
..+..... ..-.+.+++ +++.+||++||+-
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11111111 112234444 3689999999984
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.39 E-value=0.26 Score=51.15 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhcC
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGS 209 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 209 (850)
.+..+++|+|+.|+||||+++.+.... .. ... .+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l-~~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL-KN-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH-HH-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 356799999999999999999998876 21 222 244443322 12344445555666653
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.36 E-value=0.023 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.|.|+|+.|+||||+|+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.36 E-value=0.0018 Score=61.62 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++.|+|..|+||||++..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777765
No 288
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.36 E-value=1.1 Score=49.03 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
.-.++.|.|.+|+||||||.+++..... . .-..++|++... +...+...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~-~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT-K-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH-H-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-h-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3468999999999999999999887621 1 123577776544 4456665554
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.35 E-value=0.023 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.33 E-value=0.024 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.28 E-value=0.023 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.25 E-value=0.02 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 293
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.24 E-value=0.13 Score=51.19 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
-.++.|.|.+|+||||||.+++..... .-..++|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 458999999999999999888766521 1235777775543
No 294
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.034 Score=54.45 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 134 GLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 134 gr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334445555555555577899999999999999999998875
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.19 E-value=0.03 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|+|+|+.|+||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.15 E-value=0.046 Score=55.92 Aligned_cols=27 Identities=30% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 297
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.14 E-value=0.034 Score=61.49 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999999888887654 467899999999999999999876
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.13 E-value=0.16 Score=52.10 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCC-HHHHHHHHHHHhcC-----CCCCCHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQ-LERIQEKIGERIGS-----FGNKSLEEKASDIF 223 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-----~~~~~~~~~~~~l~ 223 (850)
...+++|+|.+|+||||++..++... ... -..+.++....... ....+....+..+. ....+..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-HHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999999998876 211 22355555432211 11223344444443 12234445543333
Q ss_pred HHh-ccCcEEEEEccc
Q 038480 224 KIL-SKKKFLLLLDDV 238 (850)
Q Consensus 224 ~~l-~~k~~LlVlDdv 238 (850)
..+ ..+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 344457888876
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.13 E-value=0.028 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.05 E-value=0.17 Score=52.73 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhc
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 208 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 208 (850)
.-.++.|.|.+|+||||+|..++..... .-..++|++. ..+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3468999999999999999999887622 2345677665 4566777777765543
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.03 E-value=0.042 Score=58.54 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHHHhc-------------c--CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFE-------------E--VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899998888888772 1 133568899999999999999999876
No 302
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.02 E-value=0.13 Score=53.70 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC
Q 038480 140 DKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD 193 (850)
Q Consensus 140 ~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 193 (850)
-++++.+.. .+-.-++|+|..|+|||+|++.+.+........+.+ +++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 355666654 445688999999999999999988864211223333 45555543
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.02 E-value=0.024 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.01 E-value=0.026 Score=53.21 Aligned_cols=25 Identities=44% Similarity=0.448 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.99 E-value=0.032 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998875
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.98 E-value=0.047 Score=58.53 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=35.1
Q ss_pred cccchhHHHHHHHHHhcc------------------------------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEE------------------------------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~------------------------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 468888888887766620 123468899999999999999999876
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.97 E-value=0.031 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 308
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.97 E-value=0.089 Score=66.97 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
..++|.|+|++|+|||+||.++.... ...-..++|+++.+.++... ++.++. ......++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45789999999999999999998876 23334688898888877665 444442 2233445555555
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
+...+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55554 567799999994
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.96 E-value=0.033 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.95 E-value=0.033 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.90 E-value=0.037 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.|.|+.|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999876
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.84 E-value=0.034 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.82 E-value=0.024 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998775
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.81 E-value=0.036 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.76 E-value=0.03 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..|.|.|+.|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 316
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.75 E-value=0.025 Score=59.92 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+..........-+.|+|.+|+|||++|+.+.+..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 478998866665444433333458899999999999999999875
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.035 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 318
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.74 E-value=0.041 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.+||.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999987
No 319
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.72 E-value=0.0059 Score=72.28 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=79.9
Q ss_pred cccchhHHHHHHHHHhcc-------------CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 131 TIVGLESTLDKVWRCFEE-------------VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.++|.+..++.+.+.+.- .....+.++|++|+||||||+.+++.. ...|- .+..+.-.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i---~v~~~~l~~-- 549 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFI---SIKGPELLT-- 549 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCC---CCCCSSSTT--
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEE---EEechHhhh--
Confidence 467888888888777642 123468899999999999999999986 22221 111111100
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCcEEEEEcccCCcc----------------ccccccccCCC--CCCCeE
Q 038480 198 RIQEKIGERIGSFGNKSLEEKASDIFKILSKKKFLLLLDDVWERI----------------DLVKVGVPFPT--SENASK 259 (850)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~--~~~gs~ 259 (850)
.+...........+...-...+.++++|+++... ....+...+.. ...+..
T Consensus 550 -----------~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 618 (806)
T 1ypw_A 550 -----------MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp -----------CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred -----------hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeE
Confidence 0011111222222222223456789999985310 01222222221 112333
Q ss_pred EEEecCchhHhh-hc----cCcceEeccCCChhhHHHHHHHHhCCC
Q 038480 260 VVFTTRLVDVCS-LM----GAQKKFKIECLRDKEAWELFLEKVGEE 300 (850)
Q Consensus 260 iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~ 300 (850)
||.||...+... .+ .-...+.+...+.++-..+++.+....
T Consensus 619 vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp CCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred EEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 445654333221 11 122467788888888888988776443
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.71 E-value=0.2 Score=51.74 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHhcc----CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 133 VGLESTLDKVWRCFEE----VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 133 vgr~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|-...+..+...+.. ....+|+|.|..|+||||+++.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444444444332 245599999999999999999998765
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.70 E-value=0.032 Score=53.94 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998875
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.68 E-value=0.036 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.68 E-value=0.039 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998875
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.66 E-value=0.04 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 325
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.63 E-value=0.079 Score=46.78 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=17.3
Q ss_pred ccceeecccccCCCCchhhhcCCCcceEEEccCC
Q 038480 508 HLVTLFLAINKLDTITSNFFDFMPSLRVLNLSKN 541 (850)
Q Consensus 508 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~ 541 (850)
+|++|+|++|.++.++...|..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3555555555555555544555555555555554
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.62 E-value=0.041 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
....|+|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.61 E-value=0.042 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.59 E-value=0.04 Score=51.84 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.56 E-value=0.37 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.56 E-value=0.031 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.54 E-value=0.092 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 332
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.54 E-value=0.041 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.52 E-value=0.046 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998875
No 334
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.51 E-value=0.04 Score=57.09 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEec
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVS 191 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 191 (850)
++.+||+|.|-|||||||.+..+.--..+ .-..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~---~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 46789999999999999999988777621 12236666655
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.51 E-value=0.041 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.50 E-value=0.034 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.48 E-value=0.044 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+|+|+|+.|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999999776
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.46 E-value=0.067 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.42 E-value=0.047 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.40 E-value=0.049 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999764
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.39 E-value=0.047 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998865
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.38 E-value=0.046 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998875
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.37 E-value=0.039 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.37 E-value=0.043 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.35 E-value=0.045 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.35 E-value=0.05 Score=51.81 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.32 E-value=0.052 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.30 E-value=0.044 Score=52.91 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998764
No 349
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.22 E-value=0.32 Score=52.73 Aligned_cols=96 Identities=23% Similarity=0.330 Sum_probs=62.0
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHHHH--hc-------C-
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIGER--IG-------S- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~--l~-------~- 209 (850)
+++.+.. .+-.-++|.|..|+|||+|+..+.+... +.+-+.++++-+.+.. ...++.+++.+. +. .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3444443 3456789999999999999999998751 3445778888887654 567777777653 11 1
Q ss_pred -----CCCCCHH------HHHHHHHHHhc---cCcEEEEEcccC
Q 038480 210 -----FGNKSLE------EKASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 210 -----~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
..+.... ...-.+.++++ ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111111 12223455554 589999999984
No 350
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.22 E-value=0.04 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.19 E-value=0.053 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.17 E-value=0.093 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998876
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.17 E-value=0.052 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.14 E-value=0.036 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998875
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.13 E-value=0.052 Score=52.50 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998753
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.11 E-value=0.053 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.10 E-value=0.054 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.09 E-value=0.058 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998764
No 359
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.04 E-value=0.11 Score=45.93 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=28.4
Q ss_pred eeecccccCC--CCchhhhcCCCcceEEEccCCCCCcccChh-hccccCCCeEeeccccc
Q 038480 511 TLFLAINKLD--TITSNFFDFMPSLRVLNLSKNLSLKQLPSE-ISKLVSLQYLNLSETSI 567 (850)
Q Consensus 511 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~l~~L~~L~Ls~~~i 567 (850)
+++.+++.++ .+|..+ -.+|+.|+|++| .++.+|.. +..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4455555555 444321 124666666666 56655543 34556666666666644
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.01 E-value=0.048 Score=52.68 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.99 E-value=0.1 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 362
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.98 E-value=0.3 Score=53.35 Aligned_cols=54 Identities=11% Similarity=-0.046 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.-.++.|.|.+|+||||+|.+++..... ..-..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3468999999999999999999887621 112357777664 45667777666544
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.94 E-value=0.056 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.90 E-value=0.049 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQIN 172 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~ 172 (850)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.88 E-value=0.074 Score=53.31 Aligned_cols=26 Identities=38% Similarity=0.374 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999876
No 366
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.82 E-value=0.23 Score=53.30 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCC-CCCC-EEEEEEecCC-CCHHHHHHHHHHH--hcC------
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTP-NDFD-VVIWVVVSKD-MQLERIQEKIGER--IGS------ 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~s~~-~~~~~~~~~i~~~--l~~------ 209 (850)
+++.+.. .+-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+. ....++.+++.+. +..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 3444433 233457899999999999999999876 221 1111 5667766654 4566677766553 111
Q ss_pred CCCCCHHHH------HHHHHHHhc---cCcEEEEEcccC
Q 038480 210 FGNKSLEEK------ASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~~------~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
..+...... .-.+.++++ ++.+|+++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112222111 123455554 689999999994
No 367
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.82 E-value=0.072 Score=57.54 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=36.3
Q ss_pred CcccchhHHHHHHHHHhcc--------------CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEE--------------VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888888766522 123568899999999999999999886
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.79 E-value=0.06 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|.|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999875
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.72 E-value=0.065 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.69 E-value=0.064 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+++.+.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999775
No 371
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.69 E-value=0.4 Score=53.40 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 207 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 207 (850)
.-.++.|.|.+|+||||+|.+++.... . ..-..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 345899999999999999999998862 2 2133577776644 4667776665443
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.68 E-value=0.069 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|.|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 373
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.68 E-value=0.07 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.269 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..-.+++|.|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999998864
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.66 E-value=0.064 Score=52.22 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.64 E-value=0.49 Score=51.55 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998876
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.64 E-value=0.064 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.62 E-value=0.068 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 378
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.61 E-value=0.071 Score=55.14 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|+|.|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999999999999998865
No 379
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.51 E-value=0.076 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998754
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.47 E-value=0.057 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.46 E-value=0.069 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 382
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.45 E-value=0.098 Score=49.66 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=27.2
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 139 LDKVWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 139 ~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+..++.. .+...+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444443 223479999999999999999998876
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.35 E-value=0.068 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 384
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.33 E-value=0.24 Score=53.06 Aligned_cols=97 Identities=12% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCC--------CCCC-EEEEEEecCC-CCHHHHHHHHHHH--hc
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTP--------NDFD-VVIWVVVSKD-MQLERIQEKIGER--IG 208 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~s~~-~~~~~~~~~i~~~--l~ 208 (850)
+++.+.. .+-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+. ....++.+++.+. +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444433 234567899999999999999998876 321 1222 5667767654 4566666665543 11
Q ss_pred C-------CCCCCHHHH-----HHHHHHHhc---cCcEEEEEcccC
Q 038480 209 S-------FGNKSLEEK-----ASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 209 ~-------~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
. .+....... .-.+.++++ ++.+|+++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1 122222221 123455554 689999999994
No 385
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.32 E-value=0.075 Score=51.82 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998875
No 386
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.27 E-value=0.081 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998864
No 387
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.22 E-value=0.044 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 388
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.22 E-value=0.45 Score=62.89 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc------
Q 038480 154 IGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGSFGNKSLEEKASDIFKILS------ 227 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~------ 227 (850)
|.++|++|+|||++|+.+.... .--..+.+..+...+...+++.+...+.. +
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~-----------------~~~~~g~ 1327 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNY-----------------VTTSKGL 1327 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCC-----------------EEETTTE
T ss_pred EEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhh-----------------ccccCCc
Q ss_pred -------cCcEEEEEcccC--------CccccccccccCCCCC------------CCeEEEEecCchh-------Hhhhc
Q 038480 228 -------KKKFLLLLDDVW--------ERIDLVKVGVPFPTSE------------NASKVVFTTRLVD-------VCSLM 273 (850)
Q Consensus 228 -------~k~~LlVlDdv~--------~~~~~~~~~~~l~~~~------------~gs~iivTtR~~~-------v~~~~ 273 (850)
+++.++.+||+. .....+-++..+..++ .+..+|-++-... -.+..
T Consensus 1328 ~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1328 TLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred cCcceEeccCCChhhHHHHHHHHhCCCCCCCCCChHHHHHHHHHHcCCCchHHHHHHhhhcCCCCHHHHHHHHHHHhhcc
Q 038480 274 GAQKKFKIECLRDKEAWELFLEKVGEEPLVSHPDIPMLAQAMAKECAGLPLALITIGRAMGSKNTPEEWRYAIEMLRRSA 353 (850)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 353 (850)
.....+.+...+.++-..+|.......- ...+++..++..++. .+.+-|..+.+
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~l-~~~~~v~~~~~~lv~-------------------ati~~y~~v~~------ 1461 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAIF-KLVPEFRSYTEPFAR-------------------ASVHLYNECKA------ 1461 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHHT-TSSGGGGGGHHHHHH-------------------HHHHHHHHHHH------
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH-------------------HHHHHHHHHHH------
Q ss_pred CCCCCCchhhHhHHHHhhcCCChHHHHHHHhHhcCCCCCcccCHHHHHHHHHHcC---CCCCCCCccchhhHHHHHHHHH
Q 038480 354 SEFPGMGKEVYPLLKFSYDSLSSDVLRSCLLYCSLFPEDYQISKIELIECWIGEG---FLNGFEGMGVYNQGYYVIGVLV 430 (850)
Q Consensus 354 ~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g---~i~~~~~~~~~~~~~~~~~~L~ 430 (850)
...+.-+.-|---+.+-.|-+--.+...|+...-+...++++|+-|. |-+.--..+..+...+.+.+.+
T Consensus 1462 --------~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~ 1533 (2695)
T 4akg_A 1462 --------RYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETV 1533 (2695)
T ss_dssp --------HSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred --------HcCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 038480 431 QACL 434 (850)
Q Consensus 431 ~~~l 434 (850)
...|
T Consensus 1534 ~~~f 1537 (2695)
T 4akg_A 1534 DKYL 1537 (2695)
T ss_dssp HHHS
T ss_pred HHHh
No 389
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.19 E-value=0.055 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.18 E-value=0.086 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998865
No 391
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.12 E-value=0.084 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+++|+|++|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.07 E-value=0.089 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998875
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.05 E-value=0.18 Score=48.13 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=31.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIG 204 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 204 (850)
.|+|=|.-|+||||.++.+++... . ... .++...-+......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~-~-~g~-~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE-K-RGK-KVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H-TTC-CEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H-CCC-cEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999999872 2 222 344444443333444444443
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.01 E-value=0.089 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 395
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.99 E-value=0.075 Score=50.45 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 396
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.90 E-value=0.13 Score=53.27 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
...++|+|+|-||+||||+|..++....+ . -..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCCC
Confidence 46789999999999999999999887732 2 22466666554
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.87 E-value=0.095 Score=51.38 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 398
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.87 E-value=0.3 Score=52.72 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=58.7
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCC--CCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPN--DFDVVIWVVVSKD-MQLERIQEKIGERIGS-------- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------- 209 (850)
+++.+.. .+-.-++|.|.+|+|||+|+.++++.. .... .-+.++++-+.+. ....++.+++.+.=..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3445543 334567889999999999999999986 3211 1145677776654 4566777777654211
Q ss_pred CCCCCHHHH------HHHHHHHhc---cCcEEEEEcccC
Q 038480 210 FGNKSLEEK------ASDIFKILS---KKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~~------~~~l~~~l~---~k~~LlVlDdv~ 239 (850)
..+...... .-.+.++++ ++.+|+++||+-
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111111 123445554 699999999983
No 399
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.86 E-value=0.46 Score=51.53 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=55.5
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHH-HHHHhhccCCCCCC-EEEEEEecCC-CCHHHHHHHHHHHhcC--------
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLT-QINNKFIDTPNDFD-VVIWVVVSKD-MQLERIQEKIGERIGS-------- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~-------- 209 (850)
+++.+.. .+-.-++|.|..|+|||+||. .+.+.. .-+ .++++-+.+. ....++.+++.+.=..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444443 344578999999999999964 666653 244 3467777765 3466666666653221
Q ss_pred CCCCCHHHH------HHHHHHHh--ccCcEEEEEcccC
Q 038480 210 FGNKSLEEK------ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
..+...... .-.+.+++ +++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111111111 11233444 4789999999994
No 400
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.86 E-value=0.1 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 401
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.78 E-value=0.28 Score=62.54 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-.++.|.|.+|+||||||.+++.... . .-..++|++.....+... ++.++. .+..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a-~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-h--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 446999999999999999999988872 2 224689998888777542 455554 2345666666666
Q ss_pred HHHhc-cCcEEEEEcccC
Q 038480 223 FKILS-KKKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (850)
....+ .+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 65553 456699999985
No 402
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.77 E-value=0.42 Score=51.92 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHH-HHHHhhccCCCCCC-EEEEEEecCC-CCHHHHHHHHHHHhcC--------
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLT-QINNKFIDTPNDFD-VVIWVVVSKD-MQLERIQEKIGERIGS-------- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~-------- 209 (850)
+++.+.. .+-.-++|.|..|+|||+||. .+.+.. .-+ .++++-+.+. ....++.+++.+.=..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444433 344578999999999999965 666553 245 3477777765 3466666666653211
Q ss_pred CCCCCHHHH------HHHHHHHh--ccCcEEEEEcccC
Q 038480 210 FGNKSLEEK------ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 210 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
..+...... .-.+.+++ +++.+|+++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 111211111 11233444 4789999999994
No 403
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.75 E-value=0.11 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998775
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.75 E-value=0.1 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHH
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.69 E-value=0.099 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.67 E-value=0.1 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.653 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQIN 172 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~ 172 (850)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 407
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.67 E-value=0.097 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|+|+.|+||||||..+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999875
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.67 E-value=0.1 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.66 E-value=0.08 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999876
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.63 E-value=0.18 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.60 E-value=0.1 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.59 E-value=0.1 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.57 E-value=0.11 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.. .+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998654
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.55 E-value=0.1 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 415
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.51 E-value=0.63 Score=50.98 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=42.1
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCC-CHHHHHHHHH
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDM-QLERIQEKIG 204 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 204 (850)
+++.+.. .+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. ...++.+++-
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 4455543 345689999999999999999998764 23578888888754 4666666653
No 416
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.47 E-value=0.19 Score=53.07 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 139 LDKVWRCFE--EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 139 ~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 2467899999999999999999998775
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.44 E-value=0.27 Score=61.85 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
.-+++.|.|.+|+||||||.+++..... .-..++|++.....+... ++.++. ....+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 3468999999999999999999887622 234689999888877642 455543 2334566666666
Q ss_pred HHHhc-cCcEEEEEcccCC
Q 038480 223 FKILS-KKKFLLLLDDVWE 240 (850)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (850)
....+ .+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 65553 4566999999853
No 418
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.42 E-value=0.1 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINN 173 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~ 173 (850)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999883
No 419
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.42 E-value=0.12 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.40 E-value=0.14 Score=58.67 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=37.1
Q ss_pred cccchhHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 131 TIVGLESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 131 ~~vgr~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|.+..++.+...+..+ ..+.|+|+.|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4799998888888877655 578999999999999999999875
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.38 E-value=0.27 Score=61.91 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-------CCCCCHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGS-------FGNKSLEEKASDI 222 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~l 222 (850)
+-++|-|+|+.|+||||||.++.... +..-..++|+...+..+..- ++.++. .++.+.++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 44799999999999999999998776 34456789999988877753 666665 3455556666667
Q ss_pred HHHhcc-CcEEEEEcccC
Q 038480 223 FKILSK-KKFLLLLDDVW 239 (850)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~ 239 (850)
...++. ..-+||+|-|.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 776654 55699999983
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.34 E-value=0.12 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 423
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.33 E-value=0.3 Score=46.29 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=39.7
Q ss_pred CCCCccceeecccc-cCCCC----chhhhcCCCcceEEEccCCCCCcc-----cChhhccccCCCeEeecccccc
Q 038480 504 PTCPHLVTLFLAIN-KLDTI----TSNFFDFMPSLRVLNLSKNLSLKQ-----LPSEISKLVSLQYLNLSETSIK 568 (850)
Q Consensus 504 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~-----lp~~i~~l~~L~~L~Ls~~~i~ 568 (850)
.+-+.|+.|+|++| .+... ....+..-+.|+.|+|++| .++. +...+..=+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34567788888774 54321 1233556677888888888 5553 2333444466888888888776
No 424
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.29 E-value=0.55 Score=51.65 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=41.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHH
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKI 203 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 203 (850)
+++.|.. .+-.-++|.|..|+|||+|++++.+.. +-+.++++-+.+. ....++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345689999999999999999998864 2357888887765 4455566554
No 425
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.24 E-value=0.12 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998865
No 426
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.22 E-value=0.074 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHH-Hhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQIN-NKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~-~~~ 175 (850)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 543
No 427
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.17 E-value=0.22 Score=53.88 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHH-HHHHHhhccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhcC--------C
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLL-TQINNKFIDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGS--------F 210 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~--------~ 210 (850)
+++.+.. .+-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+.+. ....++.+++.+.=.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444433 34457899999999999997 4565542 22224677877765 3466666766543111 1
Q ss_pred CCCCHHHH------HHHHHHHh--ccCcEEEEEcccC
Q 038480 211 GNKSLEEK------ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 211 ~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
.+...... .-.+-+++ +++..||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111111 11233333 5799999999994
No 428
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.10 E-value=0.22 Score=52.20 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=33.2
Q ss_pred cCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCH
Q 038480 148 EVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQL 196 (850)
Q Consensus 148 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 196 (850)
+...+++.+.|.||+||||+|..++.... ....-..++-|+.....+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la-~~~~g~~vllid~D~~~~l 62 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLA-LAQPNEQFLLISTDPAHNL 62 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHH-HHCTTSCEEEEECCSSCHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH-HhcCCCeEEEEECCCCCCh
Confidence 45568999999999999999999988762 0022334666666544333
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.01 E-value=0.13 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..+|.|.|+.|+||||||..+++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 430
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.01 E-value=0.27 Score=51.21 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=34.4
Q ss_pred ccCCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHH
Q 038480 147 EEVQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLE 197 (850)
Q Consensus 147 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 197 (850)
.+...+++.+.|-||+||||+|..++.... ..-..++-|+.....+..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 334567889999999999999999998872 233456677766544433
No 431
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.97 E-value=0.1 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997653
No 432
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.94 E-value=0.11 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.90 E-value=0.13 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.80 E-value=0.075 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 435
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.79 E-value=0.094 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.75 E-value=0.14 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999776
No 437
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.74 E-value=0.2 Score=55.22 Aligned_cols=44 Identities=14% Similarity=-0.032 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHhc--cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 132 IVGLESTLDKVWRCFE--EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 132 ~vgr~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3556555555555552 2345789999999999999999999997
No 438
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.62 E-value=0.17 Score=52.46 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 439
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.57 E-value=0.16 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 441
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.56 E-value=0.5 Score=51.43 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGER 206 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 206 (850)
.-.++.|.|.+|+||||+|.+++..... . -..++|++... +..++...+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 3468999999999999999999888632 2 24677776554 344455554443
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.54 E-value=0.29 Score=50.18 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.-.+++|.|.+|+|||||++.++.... .. .-..++|+.... +..++.+.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~-~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TA-MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HH-cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 346899999999999999999988762 11 112466665433 34444444433
No 443
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.50 E-value=0.16 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999998876
No 444
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.49 E-value=0.21 Score=47.32 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCccceeecccccCCCC----chhhhcCCCcceEEEccCC
Q 038480 506 CPHLVTLFLAINKLDTI----TSNFFDFMPSLRVLNLSKN 541 (850)
Q Consensus 506 ~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~ 541 (850)
-..|+.|+|++|.+.+. ....+..-+.|+.|+|++|
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34555555555554321 1122334445555555555
No 445
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.47 E-value=0.69 Score=50.30 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=56.4
Q ss_pred HHHHhcc-CCceEEEEEcCCCChHHHHH-HHHHHhhccC----CCCCC-EEEEEEecCC-CCHHHHHHHHHHHhcC----
Q 038480 142 VWRCFEE-VQVGIIGLYGMGGVGKTTLL-TQINNKFIDT----PNDFD-VVIWVVVSKD-MQLERIQEKIGERIGS---- 209 (850)
Q Consensus 142 l~~~l~~-~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~---- 209 (850)
+++.+.. .+-.-++|.|..|+|||+|| ..+.+.. .. ..+-+ .++++-+.+. ....++.+++.+.=..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3444443 34457899999999999995 4666654 21 12234 4677777765 3466666666653211
Q ss_pred ----CCCCCHHHH------HHHHHHHh--ccCcEEEEEcccC
Q 038480 210 ----FGNKSLEEK------ASDIFKIL--SKKKFLLLLDDVW 239 (850)
Q Consensus 210 ----~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 239 (850)
..+...... .-.+.+++ +++.+|+++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111111111 11233444 4789999999994
No 446
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.43 E-value=0.14 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 447
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.42 E-value=0.12 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999997643
No 448
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.41 E-value=0.12 Score=51.90 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 449
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.38 E-value=0.37 Score=46.58 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCE
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDV 184 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~ 184 (850)
.+|.|.|+.|+||||+++.+.+.. . ...+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCc
Confidence 589999999999999999999887 2 234554
No 450
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.29 E-value=0.27 Score=55.52 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 138 TLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 138 ~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+..+.+..+.. .+++.|.|.+|+||||++..+....
T Consensus 193 ~Q~~Av~~~~~--~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 193 EQASVLDQLAG--HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHHHTT--CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33444444433 3688999999999999999998876
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.28 E-value=0.34 Score=47.60 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEE
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVV 189 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 189 (850)
..+|.|.|+.|+||||+++.+.+.. . ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 3689999999999999999999887 2 23455344444
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.28 E-value=0.15 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 453
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.27 E-value=0.24 Score=49.62 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC-CCCHHHHHHHHHH--HhcCCCCCCHHHHHHHHHHH
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK-DMQLERIQEKIGE--RIGSFGNKSLEEKASDIFKI 225 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~l~~~ 225 (850)
..-.+++|+|+.|+|||||++.+..-. .. .+...+++.-.. .+-.... ..+.. .++. +.......+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~--~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI-NQ--TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH-HH--HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC-CC--CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHHHHHHHHHHH
Confidence 445799999999999999999988754 11 111222221100 0000000 00000 0110 111234556666
Q ss_pred hccCcEEEEEcccCCccccccccccCCCCCCCeEEEEecCchhH
Q 038480 226 LSKKKFLLLLDDVWERIDLVKVGVPFPTSENASKVVFTTRLVDV 269 (850)
Q Consensus 226 l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v 269 (850)
+..++=++++|+..+......+... ...|.-|++||-+.+.
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 6667778999999644332222111 1235567888776544
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.21 E-value=0.15 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.21 E-value=0.16 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 456
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.20 E-value=0.13 Score=50.97 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 457
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.19 E-value=0.11 Score=50.28 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999997654
No 458
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.14 E-value=0.14 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.13 E-value=0.15 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 460
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.11 E-value=0.13 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999997654
No 461
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.09 E-value=0.31 Score=53.62 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 136 ESTLDKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 136 ~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+.++.+...+.+++ +.+.|.|.+|+||||++..+....
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334444555555433 489999999999999999998876
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.09 E-value=0.14 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987653
No 463
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.07 E-value=0.13 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.05 E-value=0.16 Score=48.00 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..|.|.|..|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998764
No 465
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.04 E-value=0.13 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.01 E-value=0.12 Score=48.69 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 467
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.93 E-value=0.14 Score=50.94 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 468
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.92 E-value=0.28 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.|.+.|.||+||||+|..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999988886
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.87 E-value=0.4 Score=46.30 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHHHHHHHHH
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLERIQEKIGE 205 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 205 (850)
.+|.+-|..|+||||+++.+.+.. . ...+..++...-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887 2 233433444433333334444444443
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.87 E-value=0.31 Score=46.05 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998764
No 471
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.87 E-value=0.14 Score=51.09 Aligned_cols=26 Identities=42% Similarity=0.558 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997653
No 472
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.83 E-value=0.14 Score=55.64 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCChHHHHHH-HHHHhhccCCCCCC-EEEEEEecCCC-CHHHHHHHHHHHhcC---------CCCCC---
Q 038480 150 QVGIIGLYGMGGVGKTTLLT-QINNKFIDTPNDFD-VVIWVVVSKDM-QLERIQEKIGERIGS---------FGNKS--- 214 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~---------~~~~~--- 214 (850)
+-.-++|.|..|+|||+||. .+.+.. .-+ .++++-+.+.. ...++.+++.+.=.. .+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 34568999999999999965 666543 234 45677777653 455555555442111 11111
Q ss_pred ------HHHHHHHHHHHhccCcEEEEEcccC
Q 038480 215 ------LEEKASDIFKILSKKKFLLLLDDVW 239 (850)
Q Consensus 215 ------~~~~~~~l~~~l~~k~~LlVlDdv~ 239 (850)
.-..++.+++ +++.+|+++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1122333443 5899999999984
No 473
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.82 E-value=0.17 Score=51.76 Aligned_cols=27 Identities=15% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998754
No 474
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.80 E-value=0.17 Score=54.88 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.79 E-value=0.17 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.65 E-value=0.19 Score=53.12 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 477
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.65 E-value=0.15 Score=50.63 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.63 E-value=0.15 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998654
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.62 E-value=0.15 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.53 E-value=0.22 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 481
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.53 E-value=0.11 Score=59.13 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.6
Q ss_pred CcccchhHHHHHHHHHhccCCce-----------EEEEEcCCCChHHHHHHHHHHhh
Q 038480 130 PTIVGLESTLDKVWRCFEEVQVG-----------IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 130 ~~~vgr~~~~~~l~~~l~~~~~~-----------vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
+.++|.+..+..+.-.+..+..+ -|.++|.+|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45678887766665555443211 48899999999999999998764
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.51 E-value=0.22 Score=49.42 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 483
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.50 E-value=0.18 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.45 E-value=0.16 Score=50.66 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 485
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.40 E-value=0.16 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997653
No 486
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.38 E-value=0.35 Score=48.70 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=28.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecC
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSK 192 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 192 (850)
++|+|.|-||+||||+|..+..... .. -..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-AM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-HC--CCcEEEEcCCC
Confidence 5788899999999999999998872 22 22466666543
No 487
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.37 E-value=0.16 Score=51.41 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 488
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.36 E-value=0.52 Score=50.71 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=24.4
Q ss_pred cCCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 148 EVQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 148 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
...-.+++|+|+.|+||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999998876
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.30 E-value=0.22 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.26 E-value=0.19 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 491
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.22 E-value=0.19 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 151 VGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 151 ~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
-.++.|+|.+|+|||||+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 492
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.06 E-value=0.44 Score=47.35 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=30.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhhccCCCCCCEEEEEEecCCCCHHH
Q 038480 154 IGLYGMGGVGKTTLLTQINNKFIDTPNDFDVVIWVVVSKDMQLER 198 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 198 (850)
|+|.|-||+||||+|..+.... ... -..++-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l-a~~--g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM-ASD--YDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH-TTT--CSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH-HHC--CCeEEEEeCCCCcChHH
Confidence 6669999999999999999987 222 24567777665555443
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.92 E-value=0.22 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhh
Q 038480 153 IIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 153 vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.92 E-value=0.37 Score=45.29 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=25.9
Q ss_pred HHHHHHhccCCceEEEEEcCCCChHHHHHHHHHHh
Q 038480 140 DKVWRCFEEVQVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 140 ~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
..+.+ +...+..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445567899999999999999999854
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.88 E-value=0.22 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999998764
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.82 E-value=0.19 Score=46.55 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987653
No 497
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.70 E-value=0.24 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhh
Q 038480 154 IGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 154 i~I~G~gGvGKTtLa~~v~~~~ 175 (850)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 498
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.69 E-value=0.31 Score=45.65 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHh
Q 038480 150 QVGIIGLYGMGGVGKTTLLTQINNK 174 (850)
Q Consensus 150 ~~~vi~I~G~gGvGKTtLa~~v~~~ 174 (850)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 499
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.68 E-value=0.25 Score=52.31 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHhh
Q 038480 149 VQVGIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 149 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999765
No 500
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.65 E-value=0.23 Score=45.76 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhh
Q 038480 152 GIIGLYGMGGVGKTTLLTQINNKF 175 (850)
Q Consensus 152 ~vi~I~G~gGvGKTtLa~~v~~~~ 175 (850)
--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998763
Done!