BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038482
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 153/296 (51%), Gaps = 67/296 (22%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD--ELLEMTS 58
MH+AE G+GP ILF++GFPEL YS HQ + LA YRAVAPDLRG+GDT L + +
Sbjct: 23 MHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSK 82
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF--- 115
++ H++GD++ L++ +APN+EKVFVV HD G +A LC FR +++KALVNLSV F
Sbjct: 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKR 142
Query: 116 NPNTSVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQI------------------- 156
NP +V ++ L PGEIEA+F I
Sbjct: 143 NPKMNV-----VEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFY 197
Query: 157 ---SKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKESTITK-------------- 199
KG PDA +AL WLS+E++ Y+ KF++ +
Sbjct: 198 FPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPINWELTAPWTG 257
Query: 200 ---------------------GVKEYIHKGEFRSDVPLLEEVTIMEGVGHFINQEK 234
G KEYIH G F+ DVPLLEEV ++EG HF++QE+
Sbjct: 258 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQER 313
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 153/296 (51%), Gaps = 67/296 (22%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD--ELLEMTS 58
MH+AE G+GP ILF++GFPEL YS HQ + LA YRAVAPDLRG+GDT L + +
Sbjct: 23 MHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSK 82
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF--- 115
++ H++GD++ L++ +APN+EKVFVV HD G +A LC FR +++KALVNLSV F
Sbjct: 83 FSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKR 142
Query: 116 NPNTSVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQI------------------- 156
NP +V ++ L PGEIEA+F I
Sbjct: 143 NPKMNV-----VEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFY 197
Query: 157 ---SKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKESTITK-------------- 199
KG PDA +AL WLS+E++ Y+ KF++ +
Sbjct: 198 FPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPINWELTAPWTG 257
Query: 200 ---------------------GVKEYIHKGEFRSDVPLLEEVTIMEGVGHFINQEK 234
G KEYIH G F+ DVPLLEEV ++EG HF++QE+
Sbjct: 258 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQER 313
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD 67
QGP ++ L+GFPE YS HQ ALA YR VA D RG+G + + +Y ++GD
Sbjct: 32 QGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGD 91
Query: 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
++G++D + E+ FVVGHD G +A +R +V +SV F
Sbjct: 92 VVGVLD--SYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 137
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD 67
QGP ++ L+GFPE YS HQ ALA YR VA D RG+G + + +Y ++GD
Sbjct: 26 QGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGD 85
Query: 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
++G++D + E+ FVVGHD G +A +R +V +SV F
Sbjct: 86 VVGVLD--SYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H E G GP + +GFPE YS +Q ALA YR +A D++G+G++ E+ Y
Sbjct: 31 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 90
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF---NP 117
+ +++ +D + + + VF +GHD G + ++ F R++A+ +L+ F NP
Sbjct: 91 MEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 148
Query: 118 NTSVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQ 155
N S S IKA EPG EA+ EQ
Sbjct: 149 NMSPLES--IKA----NPVFDYQLYFQEPGVAEAELEQ 180
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H E G GP + +GFPE YS +Q ALA YR +A D++G+G++ E+ Y
Sbjct: 46 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 105
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF---NP 117
+ +++ +D + + VF +GHD G + ++ F R++A+ +L+ F NP
Sbjct: 106 MEVLCKEMVTFLDKLG-LSQAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 163
Query: 118 NTSVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQ 155
N S S IKA EPG EA+ EQ
Sbjct: 164 NMSPLES--IKA----NPVFDYQLYFQEPGVAEAELEQ 195
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H E G GP + +GFPE YS +Q ALA YR +A D++G+G++ E+ Y
Sbjct: 250 LHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYC 309
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF---NP 117
+ +++ +D + + + VF +GHD G + ++ F R++A+ +L+ F NP
Sbjct: 310 MEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 367
Query: 118 NTSVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQ 155
N S S IKA EPG EA+ EQ
Sbjct: 368 NMSPLES--IKA----NPVFDYQLYFQEPGVAEAELEQ 399
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H E G GP + +GFPE +S +Q ALA +R +A D++G+GD+ E+ Y
Sbjct: 248 LHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYA 307
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF-NPNT 119
+ +++ +D + + VF +GHD M + F R++A+ +L+ F P+
Sbjct: 308 MELLCKEMVTFLDKLG-IPQAVF-IGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDP 365
Query: 120 SVSNSNWIKALXXXXXXXXXXXXXHEPGEIEAQFEQ 155
VS I+++ EPG EA+ E+
Sbjct: 366 DVSPMKVIRSI----PVFNYQLYFQEPGVAEAELEK 397
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD--ELLEMTS 58
+H +G GP +L L+G+P + + I + Y + PDLRGFGD++ +L +++
Sbjct: 21 IHYVREGAGPTLLLLHGWPGFWWEWS-KVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSK 79
Query: 59 YTCFHVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVVFNP 117
Y+ D L+D A EK +VVGHD + + F+ + IKA +F+P
Sbjct: 80 YSLDKAADDQAALLD--ALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKA-----AIFDP 132
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLI 69
P +L ++G E + + LA+ YR VAPDL G G + L +TSY+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 70 GLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109
+I + D+ + +VGH G +A + S R +IK L+
Sbjct: 87 RVIQELP--DQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL-LEMTSY 59
+ VA KG GP +L L+G+P+ + H+ + Y V DLRG+G++ L E Y
Sbjct: 23 LRVAVKGSGPPLLLLHGYPQTHLA-WHRIAPRLAEDYSVVLADLRGYGESRALDEEGADY 81
Query: 60 TCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ + D + + + E+ V+GHD G + L + A V+L+VV
Sbjct: 82 SKAALARDQLETMGQL--GFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVV 134
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDE---LLEMT 57
+++ + G G +L L+G+P+ + H+ L + ++ VA DLRG+GD+ +
Sbjct: 17 INLVKAGHGAPLLLLHGYPQT-HVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHI 75
Query: 58 SYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+Y+ + D + ++ + E+ +VVGHD G +A L +R+K L L +
Sbjct: 76 NYSKRVMAQDQVEVMSKLG--YEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G ++ ++GFP +S Q+ AL YR + D RGFG + + Y
Sbjct: 15 LYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHV-IGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRANRIKALVNLS 112
F + ++ +DL + +VG +GT +A ++ S+ RI + L+
Sbjct: 75 TFAADLNTVLETLDL-----QDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLA 123
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G ++ ++GFP +S Q+ AL YR + D RGFG + + Y
Sbjct: 16 LYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 75
Query: 61 CFHV-IGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRANRIKALVNLS 112
F + ++ +DL + +VG GT +A ++ S+ RI A+ L+
Sbjct: 76 TFAADLNTVLETLDL-----QDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLA 124
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 5 EKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHV 64
++G G +LFL+G P Y + + + YRAVAPDL G GD+ + Y
Sbjct: 25 DEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAK--PDIEYRLQDH 82
Query: 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117
+ G ID + D+ V V+ HD G+ + +R+ A+ + P
Sbjct: 83 VAYXDGFIDALG-LDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFXEALVPP 133
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G +LF +G+P +Q L+S YR +A D RGFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVV 114
F I LI +DL ++V +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G +LF +G+P +Q L+S YR +A D RGFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVV 114
F I LI +DL ++V +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G ++ ++GFP +S Q+ AL YR + D RGFG + + Y
Sbjct: 15 LYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHV-IGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRANRIKALVNLS 112
F + ++ +DL + +VG GT +A ++ S+ RI + L+
Sbjct: 75 TFAADLNTVLETLDL-----QDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLA 123
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G ++ ++GFP +S Q+ AL YR + D RGFG + + Y
Sbjct: 15 LYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
Query: 61 CFHV-IGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRANRIKALVNLS 112
F + ++ +DL + +VG GT +A ++ S+ RI + L+
Sbjct: 75 TFAADLNTVLETLDL-----QDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLA 123
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 7 GQGPEILFLYGF-PELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHV 64
G+G ++ ++G P + Y+ TI S YR +APD+ GFG TD E +Y+
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDR-PENYNYSKDSW 81
Query: 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ +IG++D A EK +VG+ G +A + R+ +V + V
Sbjct: 82 VDHIIGIMD--ALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAV 129
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ ++G G ++ ++G+P +S QT L + YR + D RGFG + ++ Y
Sbjct: 15 LYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYD 74
Query: 61 CF----HVIGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRANRIKALVNLS 112
F H + + + L D+V +VG GT +A ++ + R+ L L+
Sbjct: 75 TFAADLHTVLETLDLRDVV--------LVGFSMGTGELARYVARYGHERVAKLAFLA 123
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H + GQGP ++ ++GF + Y HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYE-WHQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H + GQGP ++ ++GF + Y HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYE-WHQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
+H + GQGP ++ ++GF + Y HQ + + + +APDL G G ++ T Y+
Sbjct: 22 LHYVKGGQGPLVMLVHGFGQTWYE-WHQLMPELAKRFTVIAPDLPGLGQSEP--PKTGYS 78
Query: 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTY 92
V L L +P D +V HD G +
Sbjct: 79 GEQVAVYLHKLARQFSP-DRPFDLVAHDIGIW 109
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 7 GQGPEILFLYGF-PELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHV 64
G+G ++ ++G P + Y+ TI S YR +APD+ GFG TD E +Y+
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDR-PENYNYSKDSW 81
Query: 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109
+ +IG++D A EK +VG+ G +A + R+ +V
Sbjct: 82 VDHIIGIMD--ALEIEKAHIVGNAFGGGLAIATALRYSERVDRMV 124
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G +LF +G+ +Q L+S YR +A D RGFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVV 114
F I LI +DL ++V +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G +LF +G+ +Q L+S YR +A D RGFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVV 114
F I LI +DL ++V +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G +LF +G+ +Q L+S YR +A D RGFG +D+ Y
Sbjct: 11 IYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYD 70
Query: 61 CF-HVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRANRIKALVNLSVV 114
F I LI +DL ++V +VG G +A ++ + R+ LV L V
Sbjct: 71 TFADDIAQLIEHLDL-----KEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYT 60
++ + G G ++ ++G+P S +Q AL YR + D RGFG + + E Y
Sbjct: 19 IYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYD 78
Query: 61 CF 62
F
Sbjct: 79 TF 80
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEAVGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 76
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 77 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 129
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 76
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 77 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 129
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTS 58
MH + G G +LFL+G P Y I + S+R +APDL G G +D+ ++
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDK-PDLDY 79
Query: 59 YTCFHV--IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ HV + I + L E+V +V HD G+ + R+K + + +
Sbjct: 80 FFDDHVRYLDAFIEALGL-----EEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FH--VIGDL 68
L L+G P Y A R +APD GFG +D+ ++ YT FH + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNW 126
I +DL + +V D G ++ L +R K L+ N ++ +P T + S +
Sbjct: 110 IERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAF 164
Query: 127 I 127
+
Sbjct: 165 V 165
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFG-----DTDELLEMTSYTC 61
G GP +L L+GFP+ + H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQT-HVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ LI ++ + + GHD G ++ L R+ L L ++
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFG-----DTDELLEMTSYTC 61
G GP +L L+GFP+ + H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQT-HVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ LI ++ + + GHD G ++ L R+ L L ++
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FH--VIGDL 68
L L+G P Y A R +APD GFG +D+ ++ YT FH + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNW 126
I +DL + +V D G ++ L +R K L+ N ++ +P T + S +
Sbjct: 110 IERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAF 164
Query: 127 I 127
+
Sbjct: 165 V 165
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FH--VIGDL 68
L L+G P Y A R +APD GFG +D+ ++ YT FH + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNW 126
I +DL + +V D G ++ L +R K L+ N ++ +P T + S +
Sbjct: 110 IERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAF 164
Query: 127 I 127
+
Sbjct: 165 V 165
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FH--VIGDL 68
L L+G P Y A R +APD GFG +D+ ++ YT FH + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNW 126
I +DL + +V D G ++ L +R K L+ N ++ +P T + S +
Sbjct: 110 IERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAF 164
Query: 127 I 127
+
Sbjct: 165 V 165
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FH--VIGDL 68
L L+G P Y A R +APD GFG +D+ ++ YT FH + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNW 126
I +DL + +V D G ++ L +R K L+ N ++ +P T + S +
Sbjct: 110 IERLDL-----RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAF 164
Query: 127 I 127
+
Sbjct: 165 V 165
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL---EMTSYTCFH 63
G GP +L L+GFP+ + LA+ Y V DLRG+G + + + + +Y+
Sbjct: 23 GSGPALLLLHGFPQNLHMWARVAPLLAN-EYTVVCADLRGYGGSSKPVGAPDHANYSFRA 81
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ D L+ + E+ +VGHD G + + + +L L ++
Sbjct: 82 MASDQRELMRTL--GFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDII 130
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFG-----DTDELLEMTSYTC 61
G GP +L L+GFP+ + H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQT-HVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ LI ++ + + GH+ G ++ L R+ L L ++
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 4 AEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFH 63
+EK ++FL+G Y H + ++ R + PDL G G + + SY
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 95
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116
L +L+ +K+ VGHD G +A +RIKA+V++ V +
Sbjct: 96 HYKYLTAWFELLN-LPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCF 62
GQG ++F++G+P + Q A+ YR +A D RG G + + + + F
Sbjct: 17 GQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFDTF 72
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 4 AEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFH 63
+EK ++FL+G Y H + ++ R + PDL G G + + SY
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 96
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116
L +L+ +K+ VGHD G +A +RIKA+V++ V +
Sbjct: 97 HYKYLTAWFELLN-LPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 4 AEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFH 63
+EK ++FL+G Y H + ++ R + PDL G G + + SY
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 96
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116
L +L+ +K+ VGHD G +A +RIKA+V++ V +
Sbjct: 97 HYKYLTAWFELLN-LPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 4 AEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFH 63
+EK ++FL+G Y H + ++ R + PDL G G + + SY
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GSYRLLD 95
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116
L +L+ +K+ VGHD G +A +RIKA+V++ V +
Sbjct: 96 HYKYLTAWFELLN-LPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 22/85 (25%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFG------------------ 48
G GP +L L+GFP+ + LA+ Y V DLRG+G
Sbjct: 23 GSGPALLLLHGFPQNLHMWARVAPLLAN-EYTVVCADLRGYGGSSKPVGAPDHANYSFRA 81
Query: 49 ---DTDELLEMTSYTCFHVIGDLIG 70
D EL+ + FH++G G
Sbjct: 82 MASDQRELMRTLGFERFHLVGHARG 106
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDE 52
++ + G G I+F +G+P S Q I LA+ YR +A D RG G + +
Sbjct: 11 IYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQ 62
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFG-----DTDELLEMTSYTC 61
G GP +L L+GFP+ + H+ + ++ + DL G+G ++DE + T YT
Sbjct: 31 GDGPPLLLLHGFPQT-HVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDE--QHTPYTK 87
Query: 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
+ LI ++ + + GH G ++ L R+ L L ++
Sbjct: 88 RAMAKQLIEAMEQL--GHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGL 71
L L+G P Y A R +APD GFG +D+ ++ YT L+ L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV--NLSVVFNPNTSVSNSNWI 127
I+ + + + +V G ++ L +R K L+ N ++ +P T + S ++
Sbjct: 110 IERL--DLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+G P + + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHI-WRNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
I+ ++V D GT +A L + R + ++ L + +
Sbjct: 86 DAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI 129
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+G P + + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHI-WRNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
I+ ++V D GT +A L + R + ++ L + +
Sbjct: 86 DAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI 129
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGL 71
L L+G P + + R VAPDL GFG +D+ + YT L+
Sbjct: 49 FLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAF 108
Query: 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNS 124
+D + E+V +V D G + L R LV+ +V N +V S
Sbjct: 109 LDAL--QLERVTLVCQDWGGILGLTLPVDRPQ----LVDRLIVMNTALAVGLS 155
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL 68
P +LFL+G P + + L S +APDL GFG + + +Y F + L
Sbjct: 29 APVVLFLHGNPTSSHI-WRNILPLVSPVAHCIAPDLIGFGQSGK--PDIAYRFFDHVRYL 85
Query: 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114
I+ ++V D GT +A L + R + ++ L + +
Sbjct: 86 DAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI 129
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALA-SLSYRAVAPDLRGFGDTDELLEMTSY 59
++V EKG GP LF +G S + + + S + +A D RG G +D+ T Y
Sbjct: 60 LNVREKGSGPLXLFFHGITS--NSAVFEPLXIRLSDRFTTIAVDQRGHGLSDK--PETGY 115
Query: 60 TCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117
D+ GLI +A +VGH G + + + ++++V ++ F P
Sbjct: 116 EANDYADDIAGLIRTLARG--HAILVGHSLGARNSVTAAAKYPDLVRSVV--AIDFTP 169
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL----LEM 56
M ++G G ILF +G P Y + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
+Y D L +DL ++V +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL----LEM 56
M ++G G ILF +G P Y + A L R +A DL G GD+D+L E
Sbjct: 20 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 78
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
+Y D L +DL ++V +V HD G+ + R++ + + +
Sbjct: 79 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134
Query: 116 NP 117
P
Sbjct: 135 MP 136
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL----LEM 56
M ++G G ILF +G P Y + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
+Y D L +DL ++V +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL----LEM 56
M ++G G ILF +G P Y + A L R +A DL G GD+D+L E
Sbjct: 21 MAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGDSDKLDPSGPER 79
Query: 57 TSYTCFHVIGD-LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115
+Y D L +DL ++V +V HD G+ + R++ + + +
Sbjct: 80 YAYAEHRDYLDALWEALDL----GDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135
Query: 116 NP 117
P
Sbjct: 136 MP 137
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 5 EKGQGPEILFLYGFPEL-RYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFH 63
+ G G ++F+ G R HQ A + YR + D RG G T+ T+ T
Sbjct: 39 DNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFTTQTMVA 98
Query: 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMA 94
LI +D +AP VVG G ++A
Sbjct: 99 DTAALIETLD-IAP----ARVVGVSMGAFIA 124
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVA---PDLRGFGDTDELLEMTSYTCFHVIG 66
P + ++GF R H +L+ VA D+ G G +D E +T F +
Sbjct: 28 PLCIIIHGFTGHSEER-HIVAVQETLNEIGVATLRADMYGHGKSDGKFE--DHTLFKWLT 84
Query: 67 DLIGLIDLVAPND--EKVFVVGHDSGTYMACFLCSFRANRIKALVNLS 112
+++ ++D D +++ GH G + + IKAL+ LS
Sbjct: 85 NILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 144 HEPGEIEAQFEQISKGYGHPPDAIIAL---PGWLSDEDIKYF 182
++ GE+ + I KGY + P+A AL GWL DI Y+
Sbjct: 420 NQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYY 461
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL---EMTSYTCFHV 64
G ++F +G+P +Q + S YR +A D RG G +D+ +M +Y
Sbjct: 20 DGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMDTYAA--D 77
Query: 65 IGDLIGLIDLVAPNDEKVFVVGHDS-GTYMACFLCSFRANRIKALVNLSVV 114
+ L +DL +GH + G +A ++ R+ V +S V
Sbjct: 78 VAALTEALDL-----RGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 5 EKGQGPEILFLYGFPELRYS--RCHQTIALASLSYRAVAPDLRGFGDTDEL-LEMTSYTC 61
E G+G ++ ++G S I + + YR +A D+ GFG T + +E T
Sbjct: 32 EAGKGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRR 91
Query: 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109
+ D I ++ D KV +VG+ G + + + ALV
Sbjct: 92 IRHLHDFIKAMNF----DGKVSIVGNSMGGATGLGVSVLHSELVNALV 135
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 144 HEPGEIEAQFEQISKGYGHPPDA---IIALPGWL 174
++PGEI + +QI KGY + P+A I GWL
Sbjct: 380 NQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWL 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,081,413
Number of Sequences: 62578
Number of extensions: 277391
Number of successful extensions: 568
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 78
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)