Query 038482
Match_columns 234
No_of_seqs 132 out of 1338
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 11:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4178 Soluble epoxide hydrol 100.0 2.8E-37 6E-42 235.2 16.2 228 1-234 34-305 (322)
2 PLN02824 hydrolase, alpha/beta 100.0 1.7E-34 3.6E-39 227.6 18.0 113 1-116 20-138 (294)
3 PRK03592 haloalkane dehalogena 100.0 3.2E-34 6.9E-39 226.1 17.8 111 1-116 19-129 (295)
4 PRK00870 haloalkane dehalogena 100.0 9.2E-34 2E-38 224.2 19.0 113 1-115 36-150 (302)
5 PLN02679 hydrolase, alpha/beta 100.0 2.2E-33 4.8E-38 226.5 19.0 112 1-116 74-192 (360)
6 PLN02965 Probable pheophorbida 100.0 6.8E-33 1.5E-37 214.2 17.9 211 11-234 5-238 (255)
7 PRK10349 carboxylesterase BioH 100.0 9.7E-33 2.1E-37 213.4 17.2 217 1-234 4-241 (256)
8 TIGR02240 PHA_depoly_arom poly 100.0 5.9E-33 1.3E-37 216.9 15.6 104 9-117 25-128 (276)
9 PRK03204 haloalkane dehalogena 100.0 1.9E-32 4.1E-37 214.9 16.3 111 1-115 26-136 (286)
10 TIGR03343 biphenyl_bphD 2-hydr 100.0 8.2E-32 1.8E-36 211.0 18.4 112 1-115 22-136 (282)
11 PLN02578 hydrolase 100.0 2.1E-31 4.6E-36 214.7 18.3 111 1-116 78-188 (354)
12 PRK10673 acyl-CoA esterase; Pr 100.0 6.3E-31 1.4E-35 203.1 18.6 211 8-234 15-240 (255)
13 TIGR03056 bchO_mg_che_rel puta 100.0 5.4E-31 1.2E-35 205.7 15.4 113 1-117 18-132 (278)
14 PLN03087 BODYGUARD 1 domain co 100.0 8.1E-31 1.8E-35 215.3 15.9 113 2-117 189-311 (481)
15 PLN03084 alpha/beta hydrolase 100.0 3.7E-30 8E-35 207.5 18.4 112 2-116 118-233 (383)
16 TIGR03611 RutD pyrimidine util 100.0 2.6E-30 5.6E-35 199.2 15.9 113 1-117 1-117 (257)
17 PRK06489 hypothetical protein; 100.0 4.1E-30 8.9E-35 207.8 17.7 112 1-115 52-189 (360)
18 PRK11126 2-succinyl-6-hydroxy- 100.0 5.6E-30 1.2E-34 196.3 16.6 100 9-115 2-102 (242)
19 PHA02857 monoglyceride lipase; 100.0 8.7E-30 1.9E-34 199.1 17.7 217 9-234 25-255 (276)
20 PLN02385 hydrolase; alpha/beta 100.0 4.6E-30 9.9E-35 206.8 15.2 107 9-116 87-198 (349)
21 KOG4409 Predicted hydrolase/ac 100.0 6.4E-30 1.4E-34 195.7 13.3 107 8-117 89-197 (365)
22 PLN02211 methyl indole-3-aceta 100.0 7.9E-29 1.7E-33 192.8 18.4 111 2-115 10-122 (273)
23 PRK10749 lysophospholipase L2; 100.0 5.8E-29 1.3E-33 198.9 18.0 107 8-116 53-167 (330)
24 TIGR02427 protocat_pcaD 3-oxoa 100.0 2.6E-29 5.7E-34 192.5 14.5 111 1-116 2-115 (251)
25 PF12697 Abhydrolase_6: Alpha/ 100.0 7.2E-30 1.6E-34 192.6 10.9 205 12-234 1-221 (228)
26 TIGR01738 bioH putative pimelo 100.0 5.9E-29 1.3E-33 190.0 14.4 100 7-116 1-101 (245)
27 PRK08775 homoserine O-acetyltr 100.0 2.9E-29 6.2E-34 201.7 12.4 110 1-116 48-174 (343)
28 TIGR03695 menH_SHCHC 2-succiny 100.0 4.9E-29 1.1E-33 190.7 12.2 105 9-116 1-106 (251)
29 PRK07581 hypothetical protein; 100.0 6.6E-29 1.4E-33 199.5 12.7 114 1-116 28-160 (339)
30 PLN02298 hydrolase, alpha/beta 100.0 1.4E-28 2.9E-33 197.0 13.2 108 9-117 59-171 (330)
31 KOG1454 Predicted hydrolase/ac 100.0 2.7E-28 5.8E-33 192.8 13.0 108 8-117 57-168 (326)
32 TIGR01250 pro_imino_pep_2 prol 100.0 6.1E-28 1.3E-32 188.7 13.7 105 9-115 25-131 (288)
33 TIGR01249 pro_imino_pep_1 prol 100.0 3.7E-27 8.1E-32 186.7 18.0 113 1-116 17-131 (306)
34 PLN02894 hydrolase, alpha/beta 100.0 8.2E-27 1.8E-31 190.4 18.8 107 8-117 104-213 (402)
35 TIGR01392 homoserO_Ac_trn homo 99.9 2.4E-27 5.2E-32 191.1 12.7 115 1-117 18-164 (351)
36 PRK00175 metX homoserine O-ace 99.9 4.4E-27 9.6E-32 191.1 13.9 115 1-117 35-184 (379)
37 PRK14875 acetoin dehydrogenase 99.9 2.9E-26 6.2E-31 186.4 17.9 110 2-116 122-233 (371)
38 COG2267 PldB Lysophospholipase 99.9 9E-26 2E-30 176.7 16.7 222 10-234 35-276 (298)
39 PLN02980 2-oxoglutarate decarb 99.9 5.8E-27 1.3E-31 217.2 11.2 111 2-115 1361-1480(1655)
40 PLN02652 hydrolase; alpha/beta 99.9 3.4E-25 7.3E-30 179.8 16.7 106 9-116 136-246 (395)
41 PLN02511 hydrolase 99.9 8.9E-26 1.9E-30 183.6 12.5 106 8-115 99-210 (388)
42 COG1647 Esterase/lipase [Gener 99.9 1.6E-24 3.4E-29 155.9 14.0 205 7-233 13-227 (243)
43 PRK05855 short chain dehydroge 99.9 7E-25 1.5E-29 188.0 14.6 110 1-113 15-129 (582)
44 KOG2382 Predicted alpha/beta h 99.9 6.9E-24 1.5E-28 162.2 16.3 221 8-234 51-298 (315)
45 KOG1455 Lysophospholipase [Lip 99.9 5.1E-24 1.1E-28 160.6 14.0 215 10-232 55-291 (313)
46 TIGR03100 hydr1_PEP hydrolase, 99.9 7E-23 1.5E-27 159.6 17.7 212 8-233 25-258 (274)
47 TIGR01607 PST-A Plasmodium sub 99.9 1.2E-22 2.7E-27 162.2 14.6 108 9-116 21-186 (332)
48 PRK10985 putative hydrolase; P 99.9 1E-22 2.2E-27 162.4 13.8 107 8-117 57-170 (324)
49 TIGR01838 PHA_synth_I poly(R)- 99.9 1.8E-22 3.9E-27 167.8 15.4 223 8-234 187-460 (532)
50 PRK06765 homoserine O-acetyltr 99.9 6.3E-22 1.4E-26 160.2 15.3 115 1-117 43-198 (389)
51 PRK13604 luxD acyl transferase 99.9 3E-21 6.6E-26 149.1 16.8 102 9-116 37-142 (307)
52 KOG2984 Predicted hydrolase [G 99.9 2.6E-22 5.7E-27 142.4 8.8 211 1-232 33-259 (277)
53 PRK05077 frsA fermentation/res 99.9 4.9E-21 1.1E-25 156.7 17.6 104 9-116 194-301 (414)
54 PRK11071 esterase YqiA; Provis 99.9 3E-21 6.6E-26 142.1 14.4 165 10-230 2-174 (190)
55 KOG2564 Predicted acetyltransf 99.9 4.3E-21 9.4E-26 142.6 12.3 104 8-113 73-180 (343)
56 TIGR03101 hydr2_PEP hydrolase, 99.8 2.2E-20 4.9E-25 143.4 13.1 105 9-117 25-136 (266)
57 PF00561 Abhydrolase_1: alpha/ 99.8 6.2E-22 1.4E-26 150.1 3.5 76 37-114 1-78 (230)
58 PRK10566 esterase; Provisional 99.8 8.2E-20 1.8E-24 140.6 14.6 102 9-112 27-139 (249)
59 PLN02872 triacylglycerol lipas 99.8 3.9E-20 8.5E-25 149.8 11.7 108 9-117 74-199 (395)
60 PRK07868 acyl-CoA synthetase; 99.8 5.2E-20 1.1E-24 165.9 13.0 105 8-117 66-179 (994)
61 TIGR01836 PHA_synth_III_C poly 99.8 1.1E-19 2.4E-24 146.5 12.5 102 9-117 62-173 (350)
62 COG0596 MhpC Predicted hydrola 99.8 1.2E-18 2.6E-23 133.7 16.4 102 9-116 21-124 (282)
63 PF12695 Abhydrolase_5: Alpha/ 99.8 4.8E-19 1E-23 125.1 12.4 93 11-113 1-93 (145)
64 COG3208 GrsT Predicted thioest 99.8 1.2E-18 2.7E-23 128.2 12.6 202 7-234 5-221 (244)
65 KOG4667 Predicted esterase [Li 99.8 5E-17 1.1E-21 116.8 14.3 202 5-232 29-242 (269)
66 TIGR03230 lipo_lipase lipoprot 99.7 3.2E-17 6.9E-22 133.1 12.6 105 8-116 40-155 (442)
67 PLN00021 chlorophyllase 99.7 4.3E-17 9.4E-22 128.5 13.0 105 7-115 50-166 (313)
68 KOG1552 Predicted alpha/beta h 99.7 1.3E-16 2.8E-21 118.5 11.5 166 9-230 60-234 (258)
69 PRK11460 putative hydrolase; P 99.7 7.3E-16 1.6E-20 117.2 14.7 106 8-113 15-136 (232)
70 TIGR02821 fghA_ester_D S-formy 99.7 1.9E-15 4.2E-20 117.9 16.6 109 8-116 41-174 (275)
71 cd00707 Pancreat_lipase_like P 99.7 1.3E-16 2.8E-21 124.0 9.7 108 8-117 35-149 (275)
72 PLN02442 S-formylglutathione h 99.7 1.3E-15 2.7E-20 119.3 14.8 106 9-116 47-179 (283)
73 KOG2931 Differentiation-relate 99.7 1.2E-15 2.6E-20 114.7 13.6 224 2-234 35-291 (326)
74 PF03096 Ndr: Ndr family; Int 99.7 2.3E-16 5E-21 119.9 8.8 217 9-234 23-264 (283)
75 PF06342 DUF1057: Alpha/beta h 99.7 4.2E-15 9.2E-20 111.9 13.4 109 11-123 37-146 (297)
76 KOG4391 Predicted alpha/beta h 99.6 4.5E-16 9.8E-21 112.1 5.9 177 7-229 76-263 (300)
77 KOG1838 Alpha/beta hydrolase [ 99.6 8.2E-15 1.8E-19 116.4 12.9 106 7-116 123-236 (409)
78 COG0429 Predicted hydrolase of 99.6 2.6E-14 5.6E-19 109.9 13.5 104 9-116 75-186 (345)
79 COG2021 MET2 Homoserine acetyl 99.6 4.7E-14 1E-18 110.1 14.0 117 1-119 38-186 (368)
80 TIGR03502 lipase_Pla1_cef extr 99.6 1.3E-14 2.8E-19 124.9 11.6 92 10-101 450-576 (792)
81 PF00326 Peptidase_S9: Prolyl 99.6 3E-14 6.6E-19 107.1 12.4 93 25-117 3-101 (213)
82 TIGR01840 esterase_phb esteras 99.6 3.7E-14 7.9E-19 106.6 11.7 109 8-116 12-131 (212)
83 TIGR01839 PHA_synth_II poly(R) 99.6 6.8E-14 1.5E-18 116.0 13.7 103 9-118 215-331 (560)
84 COG1506 DAP2 Dipeptidyl aminop 99.6 4.4E-14 9.5E-19 121.6 12.3 186 10-232 395-598 (620)
85 PF00975 Thioesterase: Thioest 99.5 1.5E-13 3.3E-18 104.4 11.8 102 10-116 1-105 (229)
86 TIGR00976 /NonD putative hydro 99.5 6.4E-14 1.4E-18 119.4 8.8 106 8-116 21-133 (550)
87 PRK10252 entF enterobactin syn 99.5 5.6E-13 1.2E-17 124.3 15.8 104 6-115 1065-1171(1296)
88 PF01738 DLH: Dienelactone hyd 99.5 4.7E-13 1E-17 101.0 12.1 105 8-113 13-130 (218)
89 PRK10162 acetyl esterase; Prov 99.5 1.5E-12 3.3E-17 103.6 14.3 104 8-116 80-196 (318)
90 PF12146 Hydrolase_4: Putative 99.5 1.9E-13 4.2E-18 85.3 7.1 64 9-73 16-79 (79)
91 PF02230 Abhydrolase_2: Phosph 99.5 2.5E-13 5.4E-18 102.3 8.6 108 8-115 13-140 (216)
92 PF05728 UPF0227: Uncharacteri 99.5 3.6E-12 7.8E-17 92.9 14.1 163 12-230 2-172 (187)
93 TIGR01849 PHB_depoly_PhaZ poly 99.4 2.6E-12 5.7E-17 103.6 13.8 103 10-118 103-211 (406)
94 PF06500 DUF1100: Alpha/beta h 99.4 1.6E-12 3.5E-17 104.1 12.3 106 9-116 190-297 (411)
95 PF06821 Ser_hydrolase: Serine 99.4 4.2E-13 9.2E-18 96.7 8.0 88 12-115 1-91 (171)
96 PF07819 PGAP1: PGAP1-like pro 99.4 8.4E-12 1.8E-16 94.1 12.7 107 8-119 3-127 (225)
97 COG2945 Predicted hydrolase of 99.4 1.1E-11 2.5E-16 88.0 11.9 94 9-103 28-126 (210)
98 COG3319 Thioesterase domains o 99.4 6.3E-12 1.4E-16 95.6 10.3 101 10-116 1-104 (257)
99 PF10230 DUF2305: Uncharacteri 99.4 1.1E-11 2.4E-16 96.0 11.9 109 9-117 2-124 (266)
100 PF02273 Acyl_transf_2: Acyl t 99.3 2.1E-10 4.5E-15 84.7 14.2 191 9-231 30-239 (294)
101 COG3243 PhaC Poly(3-hydroxyalk 99.3 2.6E-11 5.7E-16 96.2 10.2 107 9-117 107-219 (445)
102 PLN02733 phosphatidylcholine-s 99.3 1.5E-11 3.2E-16 100.9 9.2 97 20-119 105-205 (440)
103 COG0400 Predicted esterase [Ge 99.3 5.9E-11 1.3E-15 87.7 10.8 103 9-116 18-135 (207)
104 PF05448 AXE1: Acetyl xylan es 99.3 1.2E-10 2.6E-15 92.3 13.1 194 8-231 82-305 (320)
105 PF12740 Chlorophyllase2: Chlo 99.3 3.3E-11 7.1E-16 91.2 8.9 105 7-115 15-131 (259)
106 KOG2565 Predicted hydrolases o 99.3 2.9E-11 6.2E-16 94.1 8.4 98 10-110 153-259 (469)
107 COG0412 Dienelactone hydrolase 99.3 3.3E-10 7.2E-15 86.1 14.1 105 10-115 28-146 (236)
108 COG4757 Predicted alpha/beta h 99.2 8.1E-11 1.8E-15 86.1 9.8 196 11-222 32-249 (281)
109 PRK10115 protease 2; Provision 99.2 1.9E-10 4.2E-15 100.1 14.0 110 7-116 443-560 (686)
110 PF01674 Lipase_2: Lipase (cla 99.2 3.7E-11 8E-16 89.5 5.8 89 10-100 2-95 (219)
111 PF09752 DUF2048: Uncharacteri 99.2 1.8E-09 3.8E-14 84.7 15.2 205 9-229 92-328 (348)
112 COG3571 Predicted hydrolase of 99.2 2.5E-09 5.4E-14 74.0 13.8 104 11-117 16-126 (213)
113 PF03959 FSH1: Serine hydrolas 99.2 5.8E-11 1.3E-15 89.1 6.4 159 8-233 3-205 (212)
114 PF07859 Abhydrolase_3: alpha/ 99.2 3.2E-10 7E-15 85.0 9.9 101 12-117 1-112 (211)
115 KOG2624 Triglyceride lipase-ch 99.1 8.4E-10 1.8E-14 89.1 11.4 109 7-117 71-201 (403)
116 PF08538 DUF1749: Protein of u 99.1 2.9E-10 6.2E-15 87.8 7.9 98 9-117 33-150 (303)
117 PF07224 Chlorophyllase: Chlor 99.1 4.1E-10 8.8E-15 84.1 8.1 107 6-117 43-159 (307)
118 PF06028 DUF915: Alpha/beta hy 99.0 2.2E-09 4.7E-14 82.0 10.1 108 8-117 10-145 (255)
119 KOG4627 Kynurenine formamidase 99.0 2E-09 4.4E-14 77.5 7.5 173 8-233 66-251 (270)
120 PF10503 Esterase_phd: Esteras 99.0 1.2E-08 2.6E-13 76.3 11.2 109 9-117 16-134 (220)
121 PRK04940 hypothetical protein; 98.9 3.6E-08 7.7E-13 70.8 12.2 153 12-230 2-163 (180)
122 PF00151 Lipase: Lipase; Inte 98.9 1.8E-09 4E-14 85.8 6.1 108 8-117 70-189 (331)
123 smart00824 PKS_TE Thioesterase 98.9 1.1E-08 2.4E-13 76.3 10.0 95 14-115 2-102 (212)
124 PF03403 PAF-AH_p_II: Platelet 98.9 4.5E-09 9.7E-14 85.3 7.6 106 9-117 100-264 (379)
125 COG3458 Acetyl esterase (deace 98.9 4.3E-09 9.3E-14 79.0 6.6 105 7-115 81-210 (321)
126 COG4188 Predicted dienelactone 98.9 6.4E-09 1.4E-13 81.9 7.8 95 9-103 71-182 (365)
127 COG3545 Predicted esterase of 98.9 2.7E-08 5.9E-13 70.1 9.9 93 10-117 3-96 (181)
128 PF08840 BAAT_C: BAAT / Acyl-C 98.9 3E-09 6.6E-14 79.8 5.3 53 64-117 5-58 (213)
129 COG0657 Aes Esterase/lipase [L 98.9 6.2E-08 1.4E-12 77.2 12.5 105 8-117 78-193 (312)
130 PRK05371 x-prolyl-dipeptidyl a 98.8 8.3E-08 1.8E-12 84.6 13.7 85 28-115 271-373 (767)
131 PF02129 Peptidase_S15: X-Pro 98.8 1.2E-08 2.7E-13 79.6 7.7 107 8-117 19-138 (272)
132 PF12715 Abhydrolase_7: Abhydr 98.8 4.6E-08 1E-12 77.7 9.3 106 7-113 113-258 (390)
133 PF05990 DUF900: Alpha/beta hy 98.8 6.2E-08 1.3E-12 73.6 9.7 108 7-117 16-139 (233)
134 COG1075 LipA Predicted acetylt 98.8 3E-08 6.6E-13 79.4 7.6 102 10-117 60-166 (336)
135 PF05057 DUF676: Putative seri 98.7 4.7E-08 1E-12 73.6 7.1 88 9-99 4-97 (217)
136 PF06057 VirJ: Bacterial virul 98.7 8.6E-08 1.9E-12 69.1 7.6 97 10-115 3-107 (192)
137 KOG2551 Phospholipase/carboxyh 98.7 4.1E-07 8.8E-12 66.7 10.9 156 8-232 4-205 (230)
138 KOG2281 Dipeptidyl aminopeptid 98.7 2E-07 4.4E-12 77.8 10.2 101 10-110 643-757 (867)
139 KOG3975 Uncharacterized conser 98.6 7.4E-07 1.6E-11 66.4 10.9 109 8-116 28-148 (301)
140 KOG2100 Dipeptidyl aminopeptid 98.6 4.9E-07 1.1E-11 79.6 11.6 105 10-116 527-645 (755)
141 KOG2112 Lysophospholipase [Lip 98.6 4.5E-07 9.7E-12 65.9 9.5 104 10-113 4-126 (206)
142 PTZ00472 serine carboxypeptida 98.6 2.9E-07 6.3E-12 76.9 9.6 109 8-117 76-218 (462)
143 KOG1515 Arylacetamide deacetyl 98.6 1.4E-06 3.1E-11 69.2 12.5 106 9-119 90-211 (336)
144 PF05677 DUF818: Chlamydia CHL 98.6 5.4E-07 1.2E-11 70.4 9.7 101 8-113 136-252 (365)
145 COG3509 LpqC Poly(3-hydroxybut 98.6 1.1E-06 2.5E-11 67.1 11.2 107 9-115 61-179 (312)
146 KOG2541 Palmitoyl protein thio 98.5 3.7E-06 8E-11 63.4 12.7 103 10-117 24-130 (296)
147 KOG3043 Predicted hydrolase re 98.5 1.7E-07 3.6E-12 68.7 4.8 103 10-113 40-152 (242)
148 PF11339 DUF3141: Protein of u 98.5 1.1E-05 2.3E-10 66.5 14.3 83 27-117 92-177 (581)
149 COG4814 Uncharacterized protei 98.5 1.9E-06 4.1E-11 64.4 9.1 104 10-116 46-177 (288)
150 PLN02606 palmitoyl-protein thi 98.4 2.9E-06 6.3E-11 65.8 10.0 105 8-117 25-134 (306)
151 PF03583 LIP: Secretory lipase 98.4 3.2E-06 6.9E-11 66.5 10.3 90 27-116 17-114 (290)
152 PF00756 Esterase: Putative es 98.4 7E-07 1.5E-11 68.8 6.5 56 62-117 96-152 (251)
153 PF04301 DUF452: Protein of un 98.4 2E-06 4.3E-11 63.7 8.2 81 9-117 11-92 (213)
154 PRK10439 enterobactin/ferric e 98.4 3.4E-06 7.4E-11 69.4 10.4 105 9-115 209-323 (411)
155 KOG1553 Predicted alpha/beta h 98.4 1.7E-06 3.6E-11 67.5 7.9 102 7-113 240-343 (517)
156 COG3150 Predicted esterase [Ge 98.3 2.2E-05 4.8E-10 55.1 11.1 90 12-117 2-93 (191)
157 PF02450 LCAT: Lecithin:choles 98.3 2.9E-06 6.3E-11 69.5 7.7 84 24-117 66-162 (389)
158 COG4782 Uncharacterized protei 98.3 5.9E-06 1.3E-10 65.1 8.9 107 8-117 115-236 (377)
159 KOG3724 Negative regulator of 98.3 1.4E-05 3.1E-10 68.6 11.2 105 8-117 88-222 (973)
160 PF05577 Peptidase_S28: Serine 98.2 2E-05 4.4E-10 65.7 11.3 108 9-117 29-150 (434)
161 PF12048 DUF3530: Protein of u 98.2 2.8E-05 6E-10 61.7 11.3 105 11-117 89-231 (310)
162 KOG3847 Phospholipase A2 (plat 98.2 1.6E-06 3.5E-11 66.7 4.0 107 9-117 118-277 (399)
163 COG4099 Predicted peptidase [G 98.2 7.7E-06 1.7E-10 62.7 7.4 104 10-116 192-305 (387)
164 cd00312 Esterase_lipase Estera 98.2 7.8E-06 1.7E-10 69.3 7.9 108 8-117 94-215 (493)
165 PLN02633 palmitoyl protein thi 98.1 3E-05 6.4E-10 60.3 10.0 106 7-117 23-133 (314)
166 PF02089 Palm_thioest: Palmito 98.1 1.1E-05 2.4E-10 62.0 6.1 107 9-117 5-118 (279)
167 KOG2369 Lecithin:cholesterol a 98.0 1E-05 2.2E-10 65.9 5.4 90 23-117 124-227 (473)
168 KOG4840 Predicted hydrolases o 98.0 3.9E-05 8.4E-10 56.5 7.3 103 10-117 37-146 (299)
169 COG2936 Predicted acyl esteras 97.9 2.5E-05 5.4E-10 65.6 6.7 110 7-116 43-160 (563)
170 COG0627 Predicted esterase [Ge 97.9 7.9E-05 1.7E-09 59.0 8.3 113 10-122 55-194 (316)
171 PLN02517 phosphatidylcholine-s 97.9 4E-05 8.7E-10 64.5 6.9 90 24-117 157-265 (642)
172 cd00741 Lipase Lipase. Lipase 97.8 6.1E-05 1.3E-09 53.5 5.9 53 62-116 8-68 (153)
173 KOG3967 Uncharacterized conser 97.8 0.00054 1.2E-08 50.2 10.6 107 9-117 101-229 (297)
174 KOG1551 Uncharacterized conser 97.8 0.00024 5.2E-09 53.8 8.9 91 19-113 122-228 (371)
175 COG2272 PnbA Carboxylesterase 97.7 0.00017 3.6E-09 59.4 7.6 108 9-116 94-218 (491)
176 PF01764 Lipase_3: Lipase (cla 97.6 0.00018 3.9E-09 50.1 6.2 38 62-101 48-85 (140)
177 KOG3101 Esterase D [General fu 97.6 7.3E-05 1.6E-09 54.6 3.7 109 9-117 44-178 (283)
178 PF10340 DUF2424: Protein of u 97.6 0.0009 1.9E-08 53.9 10.1 106 9-118 122-238 (374)
179 COG3946 VirJ Type IV secretory 97.6 0.00028 6E-09 56.6 6.9 93 11-112 262-362 (456)
180 PF06259 Abhydrolase_8: Alpha/ 97.6 0.0016 3.4E-08 47.2 10.1 58 60-117 86-146 (177)
181 KOG3253 Predicted alpha/beta h 97.5 0.00054 1.2E-08 57.7 7.6 155 9-231 176-347 (784)
182 PF00450 Peptidase_S10: Serine 97.4 0.0012 2.6E-08 54.8 9.2 109 8-117 39-183 (415)
183 PF00135 COesterase: Carboxyle 97.3 0.0022 4.8E-08 54.9 9.7 108 9-117 125-247 (535)
184 KOG2183 Prolylcarboxypeptidase 97.3 0.0015 3.3E-08 52.7 7.5 104 10-116 81-203 (492)
185 cd00519 Lipase_3 Lipase (class 97.2 0.0008 1.7E-08 51.1 5.7 22 80-101 128-149 (229)
186 COG4553 DepA Poly-beta-hydroxy 97.2 0.0029 6.3E-08 48.8 8.4 103 9-117 103-211 (415)
187 PF10142 PhoPQ_related: PhoPQ- 97.2 0.0031 6.7E-08 51.0 9.1 128 76-231 170-305 (367)
188 PF11187 DUF2974: Protein of u 97.2 0.002 4.3E-08 48.7 7.1 38 80-117 84-125 (224)
189 KOG2182 Hydrolytic enzymes of 97.1 0.0039 8.5E-08 51.5 9.0 111 7-117 84-209 (514)
190 COG2819 Predicted hydrolase of 97.1 0.0011 2.3E-08 50.7 5.1 50 67-116 123-173 (264)
191 PF05705 DUF829: Eukaryotic pr 97.1 0.018 3.9E-07 44.0 12.1 101 11-116 1-113 (240)
192 PLN02162 triacylglycerol lipas 97.1 0.0015 3.2E-08 53.9 6.1 38 60-99 260-297 (475)
193 PF07082 DUF1350: Protein of u 97.0 0.0089 1.9E-07 45.3 9.1 86 23-116 34-126 (250)
194 PLN00413 triacylglycerol lipas 96.9 0.0027 5.9E-08 52.5 6.4 37 61-99 267-303 (479)
195 KOG4372 Predicted alpha/beta h 96.8 0.0018 3.8E-08 52.3 4.3 86 9-97 80-167 (405)
196 PF11288 DUF3089: Protein of u 96.7 0.0056 1.2E-07 45.3 5.9 71 29-101 39-116 (207)
197 PLN02571 triacylglycerol lipas 96.7 0.0032 6.9E-08 51.5 5.0 39 62-100 208-246 (413)
198 PLN02408 phospholipase A1 96.7 0.0054 1.2E-07 49.4 6.2 38 64-101 184-221 (365)
199 PF05277 DUF726: Protein of un 96.7 0.0057 1.2E-07 49.1 6.1 40 76-117 218-262 (345)
200 PLN02454 triacylglycerol lipas 96.6 0.0045 9.7E-08 50.6 5.3 31 68-100 216-248 (414)
201 COG2382 Fes Enterochelin ester 96.6 0.0063 1.4E-07 47.3 5.7 40 80-119 177-216 (299)
202 PF01083 Cutinase: Cutinase; 96.6 0.0082 1.8E-07 43.8 6.1 101 11-117 7-124 (179)
203 COG1770 PtrB Protease II [Amin 96.5 0.058 1.3E-06 46.5 11.5 112 6-117 445-564 (682)
204 KOG1202 Animal-type fatty acid 96.5 0.016 3.4E-07 53.2 8.3 96 8-116 2122-2220(2376)
205 PLN02209 serine carboxypeptida 96.4 0.023 4.9E-07 47.5 8.6 109 8-117 67-214 (437)
206 PLN02934 triacylglycerol lipas 96.4 0.0069 1.5E-07 50.6 5.1 36 62-99 305-340 (515)
207 PLN03016 sinapoylglucose-malat 96.3 0.027 5.9E-07 47.0 8.3 109 8-117 65-212 (433)
208 PLN02802 triacylglycerol lipas 96.2 0.014 3.1E-07 48.8 6.2 38 64-101 314-351 (509)
209 KOG1516 Carboxylesterase and r 96.1 0.018 4E-07 49.6 6.9 109 9-117 112-234 (545)
210 COG2830 Uncharacterized protei 96.1 0.048 1E-06 38.4 7.4 86 10-123 12-100 (214)
211 PLN02324 triacylglycerol lipas 96.1 0.013 2.8E-07 48.0 5.2 37 64-100 199-235 (415)
212 PLN02310 triacylglycerol lipas 96.0 0.018 3.9E-07 47.1 5.9 37 64-100 191-229 (405)
213 PLN03037 lipase class 3 family 96.0 0.018 4E-07 48.3 5.9 37 64-100 300-338 (525)
214 COG2939 Carboxypeptidase C (ca 95.9 0.041 8.9E-07 45.9 7.2 106 9-115 101-236 (498)
215 PLN02753 triacylglycerol lipas 95.7 0.02 4.3E-07 48.2 5.0 37 64-100 293-332 (531)
216 PF08237 PE-PPE: PE-PPE domain 95.6 0.13 2.9E-06 38.9 8.7 82 36-117 2-91 (225)
217 COG4947 Uncharacterized protei 95.6 0.046 1E-06 39.0 5.7 110 4-117 20-138 (227)
218 PLN02719 triacylglycerol lipas 95.6 0.025 5.4E-07 47.4 5.0 37 64-100 279-318 (518)
219 PF08386 Abhydrolase_4: TAP-li 95.6 0.0087 1.9E-07 39.3 2.0 38 193-231 34-76 (103)
220 PF05576 Peptidase_S37: PS-10 95.5 0.011 2.3E-07 48.1 2.5 103 8-112 62-166 (448)
221 PLN02761 lipase class 3 family 95.4 0.031 6.7E-07 47.0 5.0 36 64-99 274-313 (527)
222 KOG2237 Predicted serine prote 95.3 0.026 5.7E-07 48.2 4.2 110 7-116 468-585 (712)
223 KOG4569 Predicted lipase [Lipi 95.2 0.038 8.1E-07 44.6 4.9 37 62-100 155-191 (336)
224 COG1073 Hydrolases of the alph 95.1 0.23 5E-06 38.7 9.1 103 9-115 49-169 (299)
225 PF11144 DUF2920: Protein of u 95.0 0.067 1.5E-06 43.7 5.8 37 81-117 185-221 (403)
226 PLN02213 sinapoylglucose-malat 95.0 0.12 2.7E-06 41.4 7.3 80 38-117 3-98 (319)
227 PLN02847 triacylglycerol lipas 94.8 0.059 1.3E-06 46.1 5.2 21 80-100 251-271 (633)
228 COG1505 Serine proteases of th 94.6 0.11 2.3E-06 44.4 6.0 105 8-112 420-532 (648)
229 PF04083 Abhydro_lipase: Parti 94.6 0.033 7.2E-07 32.9 2.3 19 8-26 42-60 (63)
230 PF09949 DUF2183: Uncharacteri 93.2 1.5 3.3E-05 28.6 8.4 85 23-110 11-97 (100)
231 KOG2029 Uncharacterized conser 93.2 0.2 4.4E-06 42.8 5.2 58 60-117 505-574 (697)
232 TIGR03712 acc_sec_asp2 accesso 92.7 0.36 7.7E-06 40.4 5.9 96 2-103 280-381 (511)
233 KOG4540 Putative lipase essent 92.5 0.22 4.7E-06 38.7 4.1 22 80-101 276-297 (425)
234 COG5153 CVT17 Putative lipase 92.5 0.22 4.7E-06 38.7 4.1 22 80-101 276-297 (425)
235 PRK12467 peptide synthase; Pro 91.4 0.99 2.2E-05 48.4 8.7 97 10-112 3693-3792(3956)
236 cd01714 ETF_beta The electron 90.0 2 4.4E-05 32.0 7.2 61 29-101 69-134 (202)
237 COG3933 Transcriptional antite 89.6 3.1 6.8E-05 34.6 8.3 74 10-98 110-183 (470)
238 PF06850 PHB_depo_C: PHB de-po 89.0 0.15 3.3E-06 37.3 0.5 40 192-231 132-181 (202)
239 PF07519 Tannase: Tannase and 87.3 1.2 2.5E-05 38.0 4.8 87 28-116 52-151 (474)
240 KOG2385 Uncharacterized conser 85.4 5.5 0.00012 33.9 7.5 42 74-117 443-489 (633)
241 COG4287 PqaA PhoPQ-activated p 83.7 3.7 8.1E-05 33.4 5.7 40 192-231 328-372 (507)
242 PRK10279 hypothetical protein; 82.1 1.7 3.6E-05 34.6 3.3 33 69-103 24-56 (300)
243 cd07225 Pat_PNPLA6_PNPLA7 Pata 81.4 2.6 5.6E-05 33.6 4.2 63 23-101 2-64 (306)
244 KOG1282 Serine carboxypeptidas 81.0 11 0.00024 31.9 7.8 108 9-117 73-215 (454)
245 COG0529 CysC Adenylylsulfate k 80.5 13 0.00028 27.2 6.9 37 7-43 20-58 (197)
246 PF00698 Acyl_transf_1: Acyl t 80.4 1.5 3.3E-05 35.1 2.6 29 68-98 74-102 (318)
247 smart00827 PKS_AT Acyl transfe 80.2 2.6 5.6E-05 33.3 3.9 30 68-99 72-101 (298)
248 cd07198 Patatin Patatin-like p 80.1 3.1 6.7E-05 30.0 3.9 32 70-103 18-49 (172)
249 PF06792 UPF0261: Uncharacteri 80.1 26 0.00056 29.2 9.4 100 10-111 2-126 (403)
250 cd07207 Pat_ExoU_VipD_like Exo 79.5 3.2 6.9E-05 30.5 3.9 30 71-102 20-49 (194)
251 KOG4388 Hormone-sensitive lipa 79.3 9 0.0002 33.3 6.7 99 11-117 398-510 (880)
252 cd07227 Pat_Fungal_NTE1 Fungal 78.8 3.7 8E-05 32.1 4.2 32 68-101 28-59 (269)
253 PF06309 Torsin: Torsin; Inte 78.5 12 0.00026 25.6 6.0 29 8-36 51-81 (127)
254 TIGR03131 malonate_mdcH malona 78.0 3.4 7.4E-05 32.6 3.9 30 68-99 66-95 (295)
255 PRK02399 hypothetical protein; 77.2 35 0.00076 28.4 9.3 99 10-111 4-128 (406)
256 cd07210 Pat_hypo_W_succinogene 76.6 5.2 0.00011 30.2 4.4 28 72-101 22-49 (221)
257 KOG1283 Serine carboxypeptidas 76.4 11 0.00024 30.2 6.0 107 9-117 31-168 (414)
258 PRK05579 bifunctional phosphop 75.8 37 0.00079 28.4 9.3 76 9-87 116-196 (399)
259 PF03610 EIIA-man: PTS system 75.6 21 0.00045 23.7 8.3 70 11-94 2-72 (116)
260 COG3340 PepE Peptidase E [Amin 75.4 14 0.00031 27.7 6.1 38 7-44 30-70 (224)
261 COG1752 RssA Predicted esteras 75.1 4.8 0.00011 32.1 4.1 33 68-102 29-61 (306)
262 TIGR00128 fabD malonyl CoA-acy 75.0 4.2 9.2E-05 31.9 3.7 29 69-99 73-102 (290)
263 cd07230 Pat_TGL4-5_like Triacy 74.9 3.3 7.2E-05 34.7 3.2 40 66-108 90-129 (421)
264 PRK05282 (alpha)-aspartyl dipe 74.7 12 0.00026 28.6 5.9 87 8-97 30-129 (233)
265 cd07228 Pat_NTE_like_bacteria 73.2 6.9 0.00015 28.2 4.2 30 72-103 22-51 (175)
266 cd03146 GAT1_Peptidase_E Type 72.9 9.9 0.00021 28.5 5.0 84 8-96 30-129 (212)
267 cd07209 Pat_hypo_Ecoli_Z1214_l 72.0 7.2 0.00016 29.3 4.1 31 70-102 18-48 (215)
268 cd07232 Pat_PLPL Patain-like p 71.8 4.5 9.8E-05 33.7 3.2 43 64-109 82-124 (407)
269 PF09994 DUF2235: Uncharacteri 71.5 41 0.0009 26.4 8.4 90 10-100 2-112 (277)
270 TIGR00521 coaBC_dfp phosphopan 70.2 59 0.0013 27.1 9.3 100 10-114 113-234 (390)
271 cd07208 Pat_hypo_Ecoli_yjju_li 68.5 9.5 0.00021 29.6 4.3 33 70-104 18-51 (266)
272 cd07205 Pat_PNPLA6_PNPLA7_NTE1 68.3 11 0.00025 27.0 4.4 28 72-101 22-49 (175)
273 COG3887 Predicted signaling pr 68.0 11 0.00024 32.8 4.6 101 9-114 258-377 (655)
274 cd07231 Pat_SDP1-like Sugar-De 67.2 6.8 0.00015 31.4 3.2 38 65-105 84-121 (323)
275 PF14488 DUF4434: Domain of un 67.0 24 0.00052 25.4 5.7 57 21-77 18-79 (166)
276 PF11144 DUF2920: Protein of u 67.0 25 0.00054 29.3 6.4 42 10-52 36-81 (403)
277 KOG2521 Uncharacterized conser 67.0 36 0.00079 27.8 7.2 107 9-116 38-153 (350)
278 cd07229 Pat_TGL3_like Triacylg 66.9 6.8 0.00015 32.4 3.2 38 70-109 103-140 (391)
279 TIGR02816 pfaB_fam PfaB family 66.7 8.1 0.00017 33.5 3.7 30 68-99 254-284 (538)
280 COG1448 TyrB Aspartate/tyrosin 65.5 41 0.0009 27.7 7.2 87 9-114 171-264 (396)
281 PRK09936 hypothetical protein; 64.0 31 0.00067 27.3 6.1 51 21-77 36-86 (296)
282 PRK11613 folP dihydropteroate 63.1 66 0.0014 25.5 7.9 57 27-94 167-225 (282)
283 cd07212 Pat_PNPLA9 Patatin-lik 62.4 16 0.00036 29.2 4.6 19 83-101 35-53 (312)
284 COG4822 CbiK Cobalamin biosynt 61.2 64 0.0014 24.4 6.9 60 9-85 138-199 (265)
285 PF10081 Abhydrolase_9: Alpha/ 59.4 20 0.00042 28.3 4.3 38 80-117 109-149 (289)
286 COG4667 Predicted esterase of 58.6 15 0.00033 28.6 3.6 44 64-110 26-70 (292)
287 COG0218 Predicted GTPase [Gene 58.3 19 0.00041 26.7 3.9 16 39-54 72-87 (200)
288 PF01583 APS_kinase: Adenylyls 58.2 23 0.0005 25.2 4.3 35 9-43 1-37 (156)
289 cd03818 GT1_ExpC_like This fam 58.0 24 0.00051 29.1 5.0 38 12-51 2-39 (396)
290 COG1073 Hydrolases of the alph 57.3 0.81 1.8E-05 35.5 -3.6 91 9-101 88-181 (299)
291 PF05724 TPMT: Thiopurine S-me 57.0 14 0.00031 27.8 3.3 31 9-44 37-67 (218)
292 cd07206 Pat_TGL3-4-5_SDP1 Tria 56.6 19 0.00041 28.7 3.9 39 64-105 84-122 (298)
293 cd07224 Pat_like Patatin-like 56.5 22 0.00047 27.2 4.2 38 65-103 15-52 (233)
294 PF00448 SRP54: SRP54-type pro 56.4 79 0.0017 23.4 8.5 73 27-111 74-148 (196)
295 cd05312 NAD_bind_1_malic_enz N 56.0 62 0.0013 25.6 6.6 82 11-98 26-124 (279)
296 PF01012 ETF: Electron transfe 56.0 70 0.0015 22.6 7.0 61 29-101 51-113 (164)
297 PRK06029 3-octaprenyl-4-hydrox 55.6 81 0.0017 23.2 7.1 57 8-77 114-176 (185)
298 PF05576 Peptidase_S37: PS-10 55.6 38 0.00083 28.3 5.5 55 173-232 334-392 (448)
299 PF04244 DPRP: Deoxyribodipyri 55.1 38 0.00082 25.8 5.2 49 24-85 50-98 (224)
300 PTZ00445 p36-lilke protein; Pr 55.0 50 0.0011 24.9 5.6 67 23-92 29-104 (219)
301 PF00326 Peptidase_S9: Prolyl 54.8 45 0.00097 24.6 5.7 61 8-74 143-208 (213)
302 KOG1209 1-Acyl dihydroxyaceton 54.6 24 0.00052 26.7 3.9 37 6-43 3-39 (289)
303 KOG1200 Mitochondrial/plastidi 54.6 89 0.0019 23.5 6.7 33 11-45 15-47 (256)
304 COG3727 Vsr DNA G:T-mismatch r 53.2 30 0.00066 23.8 3.9 33 10-42 58-114 (150)
305 KOG4389 Acetylcholinesterase/B 52.9 35 0.00076 29.3 5.0 52 66-117 204-257 (601)
306 PRK13256 thiopurine S-methyltr 52.6 17 0.00036 27.7 3.0 29 11-44 45-73 (226)
307 cd00006 PTS_IIA_man PTS_IIA, P 52.1 70 0.0015 21.4 6.8 70 11-94 3-72 (122)
308 COG1576 Uncharacterized conser 51.8 53 0.0011 23.3 5.1 46 36-94 67-112 (155)
309 COG0159 TrpA Tryptophan syntha 51.2 86 0.0019 24.6 6.6 72 10-99 96-168 (265)
310 cd00401 AdoHcyase S-adenosyl-L 51.1 82 0.0018 26.5 7.0 68 24-109 73-140 (413)
311 TIGR02069 cyanophycinase cyano 50.8 74 0.0016 24.7 6.3 38 8-45 27-66 (250)
312 PRK07313 phosphopantothenoylcy 48.6 81 0.0018 23.1 5.9 62 8-73 112-179 (182)
313 PRK14581 hmsF outer membrane N 48.5 67 0.0014 28.9 6.3 79 8-87 47-142 (672)
314 cd07204 Pat_PNPLA_like Patatin 48.4 35 0.00076 26.2 4.2 20 83-102 34-53 (243)
315 PF02633 Creatininase: Creatin 48.4 81 0.0018 24.0 6.2 72 26-100 43-121 (237)
316 PRK13753 dihydropteroate synth 47.9 67 0.0015 25.4 5.7 58 32-97 160-219 (279)
317 COG4850 Uncharacterized conser 47.7 61 0.0013 26.2 5.3 99 10-114 214-314 (373)
318 PF05673 DUF815: Protein of un 47.4 95 0.0021 24.1 6.2 31 13-43 55-87 (249)
319 PRK15180 Vi polysaccharide bio 47.3 47 0.001 28.5 4.9 78 9-88 96-197 (831)
320 cd07218 Pat_iPLA2 Calcium-inde 47.1 36 0.00078 26.2 4.1 20 83-102 33-52 (245)
321 PF08484 Methyltransf_14: C-me 47.0 39 0.00084 24.1 4.0 52 62-113 51-102 (160)
322 cd01715 ETF_alpha The electron 46.8 1E+02 0.0023 21.9 6.3 62 29-102 44-107 (168)
323 PF12780 AAA_8: P-loop contain 46.8 91 0.002 24.4 6.3 59 17-88 38-98 (268)
324 COG0331 FabD (acyl-carrier-pro 46.3 25 0.00055 28.2 3.2 20 80-99 85-104 (310)
325 cd07222 Pat_PNPLA4 Patatin-lik 45.5 29 0.00063 26.7 3.4 22 83-105 34-55 (246)
326 PF03283 PAE: Pectinacetyleste 45.0 1.2E+02 0.0026 25.0 7.0 38 80-117 156-197 (361)
327 PRK14194 bifunctional 5,10-met 44.5 50 0.0011 26.4 4.6 36 65-100 143-182 (301)
328 PRK10319 N-acetylmuramoyl-l-al 44.0 64 0.0014 25.6 5.1 41 36-77 55-100 (287)
329 PHA02114 hypothetical protein 44.0 38 0.00083 21.9 3.1 33 11-43 84-116 (127)
330 COG3621 Patatin [General funct 43.4 47 0.001 26.9 4.2 53 37-102 9-64 (394)
331 cd07221 Pat_PNPLA3 Patatin-lik 43.1 46 0.001 25.8 4.1 22 81-102 33-54 (252)
332 COG0279 GmhA Phosphoheptose is 43.0 39 0.00085 24.3 3.4 73 13-91 44-120 (176)
333 TIGR01425 SRP54_euk signal rec 42.8 1.3E+02 0.0027 25.6 6.9 68 31-110 177-246 (429)
334 COG0541 Ffh Signal recognition 42.8 1.6E+02 0.0034 25.1 7.2 70 30-111 176-247 (451)
335 PRK03363 fixB putative electro 42.7 1.6E+02 0.0036 23.7 7.2 60 30-101 42-103 (313)
336 TIGR00421 ubiX_pad polyprenyl 42.6 1.3E+02 0.0029 21.9 7.4 62 8-77 111-173 (181)
337 COG0482 TrmU Predicted tRNA(5- 42.3 1E+02 0.0022 25.4 6.0 50 30-86 21-70 (356)
338 PF13481 AAA_25: AAA domain; P 41.6 65 0.0014 23.3 4.7 61 23-88 127-188 (193)
339 PF03054 tRNA_Me_trans: tRNA m 41.4 48 0.001 27.2 4.2 57 26-87 13-70 (356)
340 TIGR03709 PPK2_rel_1 polyphosp 40.6 36 0.00078 26.6 3.2 72 7-93 53-127 (264)
341 PF11713 Peptidase_C80: Peptid 39.5 28 0.00061 24.8 2.3 50 43-92 60-116 (157)
342 cd07220 Pat_PNPLA2 Patatin-lik 39.3 55 0.0012 25.3 4.0 22 81-102 37-58 (249)
343 cd07217 Pat17_PNPLA8_PNPLA9_li 39.2 29 0.00063 28.3 2.6 18 83-100 44-61 (344)
344 PRK13111 trpA tryptophan synth 39.2 1.8E+02 0.004 22.6 6.9 78 10-105 91-169 (258)
345 KOG1252 Cystathionine beta-syn 39.1 1.9E+02 0.0042 23.6 6.9 108 2-112 197-336 (362)
346 cd03145 GAT1_cyanophycinase Ty 38.6 1.5E+02 0.0032 22.3 6.2 38 8-45 28-67 (217)
347 TIGR02883 spore_cwlD N-acetylm 38.5 72 0.0016 23.4 4.4 39 38-77 1-44 (189)
348 KOG2872 Uroporphyrinogen decar 38.3 1.6E+02 0.0035 23.5 6.2 71 10-88 253-336 (359)
349 PF01734 Patatin: Patatin-like 38.2 42 0.00092 23.8 3.3 21 80-100 27-47 (204)
350 PRK13982 bifunctional SbtC-lik 38.0 2.7E+02 0.0058 24.1 9.3 104 9-116 180-307 (475)
351 PLN02591 tryptophan synthase 37.4 1.8E+02 0.0039 22.6 6.6 78 10-105 80-158 (250)
352 PF02590 SPOUT_MTase: Predicte 37.2 54 0.0012 23.3 3.4 44 36-91 67-110 (155)
353 PRK06849 hypothetical protein; 36.9 1.5E+02 0.0032 24.5 6.5 62 24-88 16-85 (389)
354 PF02230 Abhydrolase_2: Phosph 36.8 91 0.002 23.2 4.9 57 9-74 155-214 (216)
355 COG2240 PdxK Pyridoxal/pyridox 36.5 2.2E+02 0.0047 22.6 9.2 92 15-117 11-115 (281)
356 PRK04148 hypothetical protein; 36.4 73 0.0016 22.0 3.9 45 63-113 3-47 (134)
357 PF02882 THF_DHG_CYH_C: Tetrah 36.2 98 0.0021 22.2 4.6 37 64-100 19-59 (160)
358 COG2452 Predicted site-specifi 36.0 1.8E+02 0.0039 21.5 5.9 53 11-75 117-169 (193)
359 PF03205 MobB: Molybdopterin g 36.0 68 0.0015 22.2 3.8 41 11-51 1-43 (140)
360 PF00450 Peptidase_S10: Serine 35.5 13 0.00028 30.8 0.1 18 216-234 384-401 (415)
361 PLN00022 electron transfer fla 35.3 2.4E+02 0.0052 23.3 7.2 43 57-102 98-141 (356)
362 PTZ00472 serine carboxypeptida 34.5 22 0.00047 30.3 1.3 18 216-234 427-444 (462)
363 cd07213 Pat17_PNPLA8_PNPLA9_li 34.4 38 0.00082 26.8 2.6 19 83-101 37-55 (288)
364 COG1506 DAP2 Dipeptidyl aminop 34.2 1E+02 0.0022 27.5 5.4 43 9-51 551-598 (620)
365 PF01656 CbiA: CobQ/CobB/MinD/ 34.2 65 0.0014 23.2 3.7 32 13-44 2-35 (195)
366 TIGR03707 PPK2_P_aer polyphosp 34.2 54 0.0012 25.1 3.2 70 9-93 30-102 (230)
367 PRK14974 cell division protein 33.9 2.6E+02 0.0057 22.8 8.1 67 33-111 219-287 (336)
368 PRK00103 rRNA large subunit me 33.9 1.4E+02 0.003 21.3 5.1 41 38-90 69-109 (157)
369 TIGR03127 RuMP_HxlB 6-phospho 33.7 1E+02 0.0022 22.2 4.6 32 12-43 32-63 (179)
370 PF14253 AbiH: Bacteriophage a 33.6 24 0.00052 27.4 1.3 13 80-92 235-247 (270)
371 PF03976 PPK2: Polyphosphate k 33.4 21 0.00047 27.2 1.0 71 9-94 30-103 (228)
372 COG0518 GuaA GMP synthase - Gl 33.4 1.9E+02 0.0041 21.5 6.0 35 62-98 62-96 (198)
373 cd07211 Pat_PNPLA8 Patatin-lik 32.9 36 0.00079 27.1 2.3 17 83-99 44-60 (308)
374 CHL00200 trpA tryptophan synth 32.9 2.3E+02 0.005 22.2 6.6 72 10-99 93-165 (263)
375 PF09419 PGP_phosphatase: Mito 32.7 1.9E+02 0.0042 20.9 5.8 54 32-91 36-89 (168)
376 TIGR00632 vsr DNA mismatch end 32.5 88 0.0019 21.1 3.7 14 29-42 100-113 (117)
377 PRK06490 glutamine amidotransf 32.4 2.3E+02 0.005 21.7 7.0 84 9-98 8-103 (239)
378 cd01819 Patatin_and_cPLA2 Pata 32.1 1.2E+02 0.0026 21.3 4.6 33 65-98 14-46 (155)
379 PF01075 Glyco_transf_9: Glyco 31.5 72 0.0016 24.2 3.7 35 8-42 104-143 (247)
380 cd00423 Pterin_binding Pterin 31.4 1.3E+02 0.0029 23.3 5.1 26 25-51 152-179 (258)
381 PF03796 DnaB_C: DnaB-like hel 31.1 2.5E+02 0.0053 21.6 6.9 73 12-87 104-178 (259)
382 COG1092 Predicted SAM-dependen 30.9 1.9E+02 0.0041 24.3 6.0 46 37-87 291-336 (393)
383 cd00382 beta_CA Carbonic anhyd 30.6 68 0.0015 21.5 3.0 31 63-95 44-74 (119)
384 PRK04435 hypothetical protein; 30.5 1.9E+02 0.0042 20.2 6.2 78 8-87 66-146 (147)
385 PRK13255 thiopurine S-methyltr 30.2 72 0.0016 24.1 3.3 27 13-44 41-67 (218)
386 TIGR02813 omega_3_PfaA polyket 30.1 59 0.0013 34.3 3.5 29 68-98 664-692 (2582)
387 PRK13529 malate dehydrogenase; 30.1 2.5E+02 0.0055 24.8 6.8 80 11-96 296-399 (563)
388 PF12692 Methyltransf_17: S-ad 30.0 1.3E+02 0.0027 21.4 4.1 66 20-93 38-105 (160)
389 PF09664 DUF2399: Protein of u 30.0 72 0.0016 22.6 3.1 32 8-41 40-71 (152)
390 KOG0736 Peroxisome assembly fa 30.0 2.9E+02 0.0064 25.7 7.2 88 25-117 753-846 (953)
391 PF01580 FtsK_SpoIIIE: FtsK/Sp 29.9 1.7E+02 0.0037 21.4 5.4 38 13-50 41-84 (205)
392 PF08197 TT_ORF2a: pORF2a trun 29.8 42 0.00092 18.0 1.4 13 38-50 36-48 (49)
393 cd06292 PBP1_LacI_like_10 Liga 29.5 2.5E+02 0.0055 21.3 8.1 18 27-44 74-91 (273)
394 PRK02842 light-independent pro 29.5 2.1E+02 0.0045 24.2 6.3 41 9-49 97-142 (427)
395 PRK05920 aromatic acid decarbo 29.3 2.5E+02 0.0054 21.1 7.1 62 8-77 129-191 (204)
396 COG2376 DAK1 Dihydroxyacetone 29.2 1.1E+02 0.0024 24.8 4.3 33 9-41 248-285 (323)
397 PLN02752 [acyl-carrier protein 29.1 65 0.0014 26.2 3.2 18 82-99 126-143 (343)
398 cd06562 GH20_HexA_HexB-like Be 29.1 1.8E+02 0.0038 23.8 5.6 30 21-50 68-98 (348)
399 cd01985 ETF The electron trans 29.0 1.7E+02 0.0037 21.1 5.1 52 38-101 62-114 (181)
400 cd00762 NAD_bind_malic_enz NAD 28.8 1.6E+02 0.0035 22.9 5.0 84 11-98 26-125 (254)
401 COG4874 Uncharacterized protei 28.5 1.1E+02 0.0025 23.5 4.0 28 25-52 59-86 (318)
402 PF12242 Eno-Rase_NADH_b: NAD( 28.3 1.5E+02 0.0033 18.3 4.7 42 58-101 16-61 (78)
403 TIGR03586 PseI pseudaminic aci 28.2 3.3E+02 0.0071 22.2 8.7 81 8-100 133-214 (327)
404 COG4088 Predicted nucleotide k 28.2 68 0.0015 24.3 2.8 34 11-44 2-37 (261)
405 PLN02735 carbamoyl-phosphate s 28.2 1.3E+02 0.0029 29.0 5.4 69 27-100 599-668 (1102)
406 PF08433 KTI12: Chromatin asso 28.0 1.6E+02 0.0034 23.2 4.9 72 11-85 2-76 (270)
407 TIGR03607 patatin-related prot 27.8 1.1E+02 0.0023 28.1 4.4 20 80-99 66-85 (739)
408 COG0859 RfaF ADP-heptose:LPS h 27.8 1.2E+02 0.0025 24.6 4.4 34 9-42 175-214 (334)
409 COG3673 Uncharacterized conser 27.7 3.4E+02 0.0075 22.2 9.0 90 9-99 31-141 (423)
410 PRK14457 ribosomal RNA large s 27.4 3.5E+02 0.0076 22.2 8.1 75 11-94 259-333 (345)
411 COG1255 Uncharacterized protei 27.2 70 0.0015 21.6 2.4 23 23-45 23-45 (129)
412 PLN00179 acyl- [acyl-carrier p 27.1 1.2E+02 0.0027 25.1 4.2 64 42-109 288-363 (390)
413 TIGR03840 TMPT_Se_Te thiopurin 27.0 83 0.0018 23.6 3.2 16 29-44 49-64 (213)
414 PF03033 Glyco_transf_28: Glyc 27.0 57 0.0012 22.0 2.2 31 12-42 2-32 (139)
415 cd06564 GH20_DspB_LnbB-like Gl 26.9 2.3E+02 0.005 22.9 5.9 31 19-49 78-109 (326)
416 PF08645 PNK3P: Polynucleotide 26.9 2.3E+02 0.0051 20.0 6.4 44 29-77 38-82 (159)
417 TIGR00288 conserved hypothetic 26.6 1.3E+02 0.0028 21.6 3.9 30 10-43 107-136 (160)
418 TIGR00246 tRNA_RlmH_YbeA rRNA 26.6 1.5E+02 0.0032 21.0 4.2 7 39-45 68-74 (153)
419 PRK00771 signal recognition pa 26.6 4.1E+02 0.0088 22.7 10.0 36 9-44 94-131 (437)
420 PRK13512 coenzyme A disulfide 26.5 1.1E+02 0.0025 25.7 4.3 44 66-114 137-180 (438)
421 PF13714 PEP_mutase: Phosphoen 26.4 3E+02 0.0066 21.1 7.2 66 15-87 77-143 (238)
422 PF06415 iPGM_N: BPG-independe 26.3 3E+02 0.0064 21.0 6.3 56 24-86 47-103 (223)
423 PRK06193 hypothetical protein; 26.3 1.3E+02 0.0029 22.5 4.1 31 59-89 135-165 (206)
424 COG1831 Predicted metal-depend 26.2 3.1E+02 0.0068 21.6 6.0 70 15-87 12-84 (285)
425 COG1485 Predicted ATPase [Gene 26.1 1.2E+02 0.0027 24.9 4.1 28 59-88 139-168 (367)
426 cd03379 beta_CA_cladeD Carboni 26.1 1.1E+02 0.0023 21.3 3.4 30 63-94 41-70 (142)
427 PF06792 UPF0261: Uncharacteri 26.1 1.6E+02 0.0035 24.7 4.8 43 8-50 183-225 (403)
428 PF04084 ORC2: Origin recognit 26.1 2E+02 0.0043 23.4 5.3 77 13-93 57-150 (326)
429 COG2513 PrpB PEP phosphonomuta 26.1 1.4E+02 0.003 23.7 4.3 64 23-91 24-91 (289)
430 PRK10964 ADP-heptose:LPS hepto 25.9 1.4E+02 0.003 23.9 4.5 34 9-42 178-216 (322)
431 cd01983 Fer4_NifH The Fer4_Nif 25.9 1.4E+02 0.0029 18.1 3.7 30 14-43 3-34 (99)
432 cd03144 GATase1_ScBLP_like Typ 25.8 1.3E+02 0.0027 20.2 3.5 15 80-94 76-90 (114)
433 PRK10115 protease 2; Provision 25.6 2.8E+02 0.0061 25.2 6.7 66 8-77 605-678 (686)
434 KOG3062 RNA polymerase II elon 25.4 3.2E+02 0.007 21.1 7.7 73 11-85 2-79 (281)
435 TIGR01618 phage_P_loop phage n 25.3 2.5E+02 0.0054 21.3 5.5 22 24-45 67-90 (220)
436 PF00148 Oxidored_nitro: Nitro 25.1 2.6E+02 0.0056 23.2 6.1 63 22-90 90-156 (398)
437 COG2062 SixA Phosphohistidine 25.0 2.1E+02 0.0045 20.6 4.7 72 9-96 47-120 (163)
438 cd01311 PDC_hydrolase 2-pyrone 25.0 2E+02 0.0044 22.2 5.2 49 63-113 28-78 (263)
439 PF03853 YjeF_N: YjeF-related 24.9 1.2E+02 0.0026 21.7 3.6 35 8-42 24-58 (169)
440 PF01520 Amidase_3: N-acetylmu 24.9 89 0.0019 22.2 3.0 44 40-87 1-49 (175)
441 PF15566 Imm18: Immunity prote 24.8 99 0.0022 17.4 2.4 30 61-92 4-33 (52)
442 TIGR00959 ffh signal recogniti 24.8 4.4E+02 0.0095 22.4 7.7 20 30-49 176-195 (428)
443 PRK06696 uridine kinase; Valid 24.7 2E+02 0.0044 21.5 5.0 37 7-43 19-57 (223)
444 KOG2316 Predicted ATPase (PP-l 24.4 1.3E+02 0.0028 22.9 3.6 80 29-112 56-136 (277)
445 cd07199 Pat17_PNPLA8_PNPLA9_li 24.3 1.4E+02 0.0031 22.9 4.2 18 83-100 37-54 (258)
446 PRK07206 hypothetical protein; 24.3 3.6E+02 0.0077 22.4 6.8 32 10-45 3-34 (416)
447 COG1926 Predicted phosphoribos 24.1 2.2E+02 0.0047 21.6 4.7 45 63-109 9-55 (220)
448 TIGR01496 DHPS dihydropteroate 24.0 3.5E+02 0.0076 21.0 6.8 25 26-51 151-177 (257)
449 cd07216 Pat17_PNPLA8_PNPLA9_li 23.9 57 0.0012 26.1 1.9 17 83-99 45-61 (309)
450 TIGR00090 iojap_ybeB iojap-lik 23.8 50 0.0011 21.4 1.3 57 28-88 5-68 (99)
451 cd00883 beta_CA_cladeA Carboni 23.7 1.2E+02 0.0026 22.1 3.4 32 64-97 67-98 (182)
452 PRK14191 bifunctional 5,10-met 23.6 2E+02 0.0043 22.9 4.8 36 65-100 141-180 (285)
453 TIGR02852 spore_dpaB dipicolin 23.6 2.6E+02 0.0057 20.6 5.1 67 8-82 115-185 (187)
454 PRK14582 pgaB outer membrane N 23.5 1E+02 0.0022 27.9 3.4 78 8-86 47-141 (671)
455 KOG0780 Signal recognition par 23.5 4.6E+02 0.0099 22.2 7.3 62 29-102 176-237 (483)
456 PLN02748 tRNA dimethylallyltra 23.2 4.8E+02 0.01 22.5 7.2 78 9-88 21-120 (468)
457 PRK10792 bifunctional 5,10-met 23.1 1.9E+02 0.0042 22.9 4.6 36 65-100 143-182 (285)
458 PLN03019 carbonic anhydrase 23.0 1.3E+02 0.0029 24.4 3.7 33 63-97 200-232 (330)
459 PF05577 Peptidase_S28: Serine 22.7 1E+02 0.0022 26.0 3.2 34 196-230 380-414 (434)
460 PRK14176 bifunctional 5,10-met 22.6 2E+02 0.0044 22.9 4.7 36 65-100 148-187 (287)
461 COG3034 Uncharacterized protei 22.6 58 0.0013 25.8 1.7 23 11-33 139-161 (298)
462 PTZ00317 NADP-dependent malic 22.6 4E+02 0.0087 23.6 6.7 82 11-97 298-399 (559)
463 PRK08506 replicative DNA helic 22.5 5E+02 0.011 22.3 7.5 63 21-86 285-349 (472)
464 PRK07854 enoyl-CoA hydratase; 22.5 3.6E+02 0.0078 20.6 6.7 81 19-100 23-109 (243)
465 cd00842 MPP_ASMase acid sphing 22.4 1.9E+02 0.004 22.8 4.6 26 62-87 196-221 (296)
466 cd05005 SIS_PHI Hexulose-6-pho 22.3 2.3E+02 0.005 20.3 4.7 30 13-42 36-65 (179)
467 cd08185 Fe-ADH1 Iron-containin 22.2 4.5E+02 0.0098 21.7 8.1 64 10-86 26-91 (380)
468 PRK06731 flhF flagellar biosyn 22.2 4E+02 0.0086 21.0 8.3 73 26-110 143-218 (270)
469 COG0552 FtsY Signal recognitio 22.1 4.5E+02 0.0097 21.6 8.5 92 8-118 137-234 (340)
470 PRK02399 hypothetical protein; 22.1 2.1E+02 0.0046 24.0 4.8 43 9-51 185-227 (406)
471 PRK11789 N-acetyl-anhydromuran 22.0 1.2E+02 0.0027 22.2 3.2 27 61-89 132-158 (185)
472 PRK07053 glutamine amidotransf 22.0 3.5E+02 0.0077 20.6 5.8 33 64-98 68-100 (234)
473 COG1066 Sms Predicted ATP-depe 21.8 4.2E+02 0.0091 22.6 6.4 63 23-88 155-219 (456)
474 PRK14175 bifunctional 5,10-met 21.8 2.1E+02 0.0046 22.7 4.6 36 65-100 142-181 (286)
475 PRK14483 DhaKLM operon coactiv 21.8 2.5E+02 0.0053 22.9 5.0 34 9-42 252-290 (329)
476 TIGR02362 dhaK1b probable dihy 21.7 2.5E+02 0.0055 22.8 5.1 33 9-41 249-286 (326)
477 cd07214 Pat17_isozyme_like Pat 21.6 68 0.0015 26.2 2.0 18 83-100 46-63 (349)
478 KOG2805 tRNA (5-methylaminomet 21.6 4.5E+02 0.0097 21.4 6.3 46 30-77 23-68 (377)
479 PF03681 UPF0150: Uncharacteri 21.6 1.3E+02 0.0029 16.1 2.6 32 35-73 12-43 (48)
480 PF02606 LpxK: Tetraacyldisacc 21.5 1.6E+02 0.0035 23.9 4.0 43 10-53 35-81 (326)
481 COG2201 CheB Chemotaxis respon 21.5 1.1E+02 0.0023 25.2 3.0 36 80-115 157-193 (350)
482 PF01936 NYN: NYN domain; Int 21.5 1.6E+02 0.0034 20.0 3.6 30 10-43 97-126 (146)
483 TIGR01361 DAHP_synth_Bsub phos 21.4 4E+02 0.0087 20.8 8.2 73 8-90 131-206 (260)
484 TIGR02113 coaC_strep phosphopa 21.3 1.5E+02 0.0032 21.6 3.5 37 8-44 111-150 (177)
485 PRK00091 miaA tRNA delta(2)-is 21.3 4.2E+02 0.0091 21.3 6.3 74 10-85 4-99 (307)
486 cd07215 Pat17_PNPLA8_PNPLA9_li 21.3 74 0.0016 25.7 2.1 17 83-99 43-59 (329)
487 PRK03846 adenylylsulfate kinas 21.3 2.3E+02 0.0049 20.7 4.6 37 7-43 21-59 (198)
488 PF02540 NAD_synthase: NAD syn 21.2 3.2E+02 0.007 21.0 5.5 48 61-111 2-53 (242)
489 cd05014 SIS_Kpsf KpsF-like pro 21.2 2.1E+02 0.0046 18.9 4.2 31 13-43 3-33 (128)
490 PF15660 Imm49: Immunity prote 21.1 71 0.0015 18.7 1.4 20 57-76 62-81 (84)
491 CHL00175 minD septum-site dete 21.1 2E+02 0.0044 22.4 4.5 37 9-45 15-53 (281)
492 COG1312 UxuA D-mannonate dehyd 21.0 1.2E+02 0.0026 24.7 3.1 30 23-52 83-113 (362)
493 PF13439 Glyco_transf_4: Glyco 20.9 83 0.0018 21.7 2.2 31 16-46 9-39 (177)
494 TIGR02193 heptsyl_trn_I lipopo 20.9 2E+02 0.0044 22.8 4.6 34 9-42 179-217 (319)
495 cd01979 Pchlide_reductase_N Pc 20.9 3.6E+02 0.0079 22.4 6.1 41 9-49 87-131 (396)
496 COG2205 KdpD Osmosensitive K+ 20.8 7.1E+02 0.015 23.4 8.1 76 9-94 249-327 (890)
497 PRK00652 lpxK tetraacyldisacch 20.8 2.4E+02 0.0051 22.9 4.8 41 10-51 49-93 (325)
498 PF03405 FA_desaturase_2: Fatt 20.8 2.4E+02 0.0052 23.0 4.8 48 57-108 258-305 (330)
499 PLN03093 Protein SENSITIVITY T 20.5 3.6E+02 0.0078 21.3 5.4 15 80-94 198-212 (273)
500 cd02696 MurNAc-LAA N-acetylmur 20.5 1.8E+02 0.0039 20.6 3.9 36 39-75 1-37 (172)
No 1
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=235.18 Aligned_cols=228 Identities=37% Similarity=0.643 Sum_probs=183.8
Q ss_pred CcccccC--CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 1 MHVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 1 l~~~~~g--~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
++|.+.| ++|.++++||++.++.+|+.++..|+.+||+|+++|+||+|.|+.|.....||+..++.|+.+++++++.
T Consensus 34 ~h~~e~g~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~Lg~- 112 (322)
T KOG4178|consen 34 LHYVEGGPGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHLGL- 112 (322)
T ss_pred EEEEeecCCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHhcc-
Confidence 3566666 5899999999999999999999999999999999999999999999977899999999999999999999
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhh
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISK 158 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
++++++||+||+++|+.+|..+|++|+++|+++.+.. .|...+ .+.....+...++...++.+...+..+.....
T Consensus 113 -~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~-~p~~~~---~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~ 187 (322)
T KOG4178|consen 113 -KKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP-NPKLKP---LDSSKAIFGKSYYICLFQEPGKPETELSKDDT 187 (322)
T ss_pred -ceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC-Ccccch---hhhhccccCccceeEeccccCcchhhhccchh
Confidence 9999999999999999999999999999999998776 344444 67777788888888888888777654444333
Q ss_pred c--------CC-----CCCCCCCCCCCCCchhHHHHHHhhhcccCC-----------------------cccc-eEeecC
Q 038482 159 G--------YG-----HPPDAIIALPGWLSDEDIKYFTTKFDKNAL-----------------------LKES-TITKGV 201 (234)
Q Consensus 159 ~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------i~~P-lli~G~ 201 (234)
. .+ ..+......+.|+++++++.+...+...++ +++| ++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~ 267 (322)
T KOG4178|consen 188 EMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGD 267 (322)
T ss_pred HHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEec
Confidence 2 00 001000012457777777766655533222 8888 889999
Q ss_pred Ccccc-----ccccccCCCCCceeEEeCCCCCccccCC
Q 038482 202 KEYIH-----KGEFRSDVPLLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 202 ~D~~~-----~~~~~~~~~~~~~~~~~~~agH~~~~e~ 234 (234)
.|.+. .+.+.+..|+..+.++++|+|||+++|+
T Consensus 268 ~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~ 305 (322)
T KOG4178|consen 268 LDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEK 305 (322)
T ss_pred CcccccchhHHHHHHHhhccccceEEecCCcccccccC
Confidence 99986 4556777788778899999999999986
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.7e-34 Score=227.65 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=102.6
Q ss_pred CcccccC-CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc-----cccccHHHHHHHHHHHHHh
Q 038482 1 MHVAEKG-QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE-----MTSYTCFHVIGDLIGLIDL 74 (234)
Q Consensus 1 l~~~~~g-~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~~~~ 74 (234)
++|...| ++|+|||+||+++++..|+.+++.|.++ |+|+++|+||||.|+.+.. ...++++++++|+.++++.
T Consensus 20 i~y~~~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~ 98 (294)
T PLN02824 20 IRYQRAGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSD 98 (294)
T ss_pred EEEEEcCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHH
Confidence 4677777 4799999999999999999999999987 8999999999999987641 1368999999999999999
Q ss_pred cCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 75 VAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++. ++++|+||||||++++.+|+++|++|+++|++++...
T Consensus 99 l~~--~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~ 138 (294)
T PLN02824 99 VVG--DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLR 138 (294)
T ss_pred hcC--CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcc
Confidence 999 9999999999999999999999999999999997653
No 3
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=3.2e-34 Score=226.14 Aligned_cols=111 Identities=29% Similarity=0.417 Sum_probs=103.6
Q ss_pred CcccccCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCC
Q 038482 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 1 l~~~~~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
++|...|++++|||+||++++...|+.+++.|.+. ++|+++|+||||.|+.+. ..++++++++|+.++++++++ +
T Consensus 19 i~y~~~G~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~--~~~~~~~~a~dl~~ll~~l~~--~ 93 (295)
T PRK03592 19 MAYIETGEGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPD--IDYTFADHARYLDAWFDALGL--D 93 (295)
T ss_pred EEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHhCC--C
Confidence 35777888999999999999999999999999997 799999999999999876 468999999999999999999 9
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+++++||||||.+++.++.++|++|+++|++++...
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~ 129 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVR 129 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCC
Confidence 999999999999999999999999999999998543
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=9.2e-34 Score=224.18 Aligned_cols=113 Identities=27% Similarity=0.389 Sum_probs=102.7
Q ss_pred CcccccCC--CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 1 MHVAEKGQ--GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 1 l~~~~~g~--~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
|+|...|+ +|+|||+||++++...|..+++.|.+.||+|+++|+||||.|+++.....++++++++|+.++++++++
T Consensus 36 i~y~~~G~~~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l~~- 114 (302)
T PRK00870 36 MHYVDEGPADGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQLDL- 114 (302)
T ss_pred EEEEecCCCCCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHcCC-
Confidence 45777774 789999999999999999999999877899999999999999876533568999999999999999999
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
++++++||||||++++.+|.++|++|+++|++++..
T Consensus 115 -~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 115 -TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred -CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 999999999999999999999999999999998643
No 5
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.2e-33 Score=226.55 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=100.9
Q ss_pred CcccccCCC------ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh
Q 038482 1 MHVAEKGQG------PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL 74 (234)
Q Consensus 1 l~~~~~g~~------~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~ 74 (234)
++|.+.|++ |+|||+||++++...|.++++.|.+ +|+|+++|+||||.|+++.. ..++++++++++.++++.
T Consensus 74 i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-~~~~~~~~a~~l~~~l~~ 151 (360)
T PLN02679 74 INYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-FSYTMETWAELILDFLEE 151 (360)
T ss_pred EEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-ccccHHHHHHHHHHHHHH
Confidence 467777765 9999999999999999999999988 59999999999999988653 468999999999999999
Q ss_pred cCCCCCcEEEEEeChHHHHHHHHHHh-ccccccceeeeccCCC
Q 038482 75 VAPNDEKVFVVGHDSGTYMACFLCSF-RANRIKALVNLSVVFN 116 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~Gg~ia~~~a~~-~p~~v~~lvl~~~~~~ 116 (234)
+++ ++++|+||||||++++.++++ +|++|+++|++++...
T Consensus 152 l~~--~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~ 192 (360)
T PLN02679 152 VVQ--KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGG 192 (360)
T ss_pred hcC--CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccc
Confidence 999 999999999999999998874 7999999999997653
No 6
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=6.8e-33 Score=214.17 Aligned_cols=211 Identities=14% Similarity=0.121 Sum_probs=138.8
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCC-cEEEEEeCh
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDE-KVFVVGHDS 89 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~-~~~l~GhS~ 89 (234)
+|||+||++.+...|+.+++.|.+.||+|+++|+||||.|+.+.. ..++++++++|+.++++.++. . +++|+||||
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-~~~~~~~~a~dl~~~l~~l~~--~~~~~lvGhSm 81 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-TVSSSDQYNRPLFALLSDLPP--DHKVILVGHSI 81 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-ccCCHHHHHHHHHHHHHhcCC--CCCEEEEecCc
Confidence 699999999999999999999977689999999999999986542 468899999999999999986 5 999999999
Q ss_pred HHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCccccc---ccccCcc----hHHHHHHhh-hhc--
Q 038482 90 GTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYI---GGIHEPG----EIEAQFEQI-SKG-- 159 (234)
Q Consensus 90 Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~-~~~-- 159 (234)
||++++.++.++|++|+++|++++............+....... ...+.. .....+. ......... ...
T Consensus 82 GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T PLN02965 82 GGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGT-EKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSP 160 (255)
T ss_pred chHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhcc-ccceeeeeccCCCCCcchhhcCHHHHHHHHhcCCC
Confidence 99999999999999999999999864321111111111101100 000000 0000000 000010000 000
Q ss_pred -------CCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCC
Q 038482 160 -------YGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVG 227 (234)
Q Consensus 160 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~ag 227 (234)
........ . ..+ .......... ..+++| ++|+|++|.++ .+.+.+.+|++ +++++++||
T Consensus 161 ~~~~~~~~~~~~~~~--~-~~~--~~~~~~~~~~---~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a-~~~~i~~~G 231 (255)
T PLN02965 161 LEDYTLSSKLLRPAP--V-RAF--QDLDKLPPNP---EAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPA-QTYVLEDSD 231 (255)
T ss_pred HHHHHHHHHhcCCCC--C-cch--hhhhhccchh---hcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcc-eEEEecCCC
Confidence 00000000 0 000 0111111111 128999 88999999987 67899999999 999999999
Q ss_pred CccccCC
Q 038482 228 HFINQEK 234 (234)
Q Consensus 228 H~~~~e~ 234 (234)
|++++|+
T Consensus 232 H~~~~e~ 238 (255)
T PLN02965 232 HSAFFSV 238 (255)
T ss_pred CchhhcC
Confidence 9999985
No 7
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=9.7e-33 Score=213.45 Aligned_cols=217 Identities=15% Similarity=0.097 Sum_probs=137.9
Q ss_pred CcccccCCCc-eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCC
Q 038482 1 MHVAEKGQGP-EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPND 79 (234)
Q Consensus 1 l~~~~~g~~~-~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~ 79 (234)
++|...|+++ +|||+||+++++..|..+++.|.+. |+|+++|+||||.|+.+. .++++++++++.+ +.+
T Consensus 4 ~~y~~~G~g~~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~---~~~~~~~~~~l~~----~~~-- 73 (256)
T PRK10349 4 IWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFG---ALSLADMAEAVLQ----QAP-- 73 (256)
T ss_pred cchhhcCCCCCeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCC---CCCHHHHHHHHHh----cCC--
Confidence 5788889886 6999999999999999999999986 999999999999998643 5788888777653 567
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCC----CCchhHHHHhhhhcCcc---ccccc-----ccCcc
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTS----VSNSNWIKALGAYYGDD---YYIGG-----IHEPG 147 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~ 147 (234)
++++|+||||||.+++.+|.++|++|+++|++++.+..... .....+...+...+... ..... +....
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 89999999999999999999999999999999875432111 11111111111110000 00000 00000
Q ss_pred hHHHHHHhhhhcCCCCCCCCCCCCCCCch-hHHHHH--HhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCce
Q 038482 148 EIEAQFEQISKGYGHPPDAIIALPGWLSD-EDIKYF--TTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEE 219 (234)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~ 219 (234)
. ........... ... ........ ..+..+ .+.......+++| ++|+|++|.++ .+.+.+.++++ +
T Consensus 154 ~-~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~-~ 226 (256)
T PRK10349 154 A-RQDARALKKTV--LAL---PMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHS-E 226 (256)
T ss_pred H-HHHHHHHHHHh--hcc---CCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCC-e
Confidence 0 00000000000 000 00000000 000000 0011111128999 88999999987 45677889999 9
Q ss_pred eEEeCCCCCccccCC
Q 038482 220 VTIMEGVGHFINQEK 234 (234)
Q Consensus 220 ~~~~~~agH~~~~e~ 234 (234)
+.++|++||++++|+
T Consensus 227 ~~~i~~~gH~~~~e~ 241 (256)
T PRK10349 227 SYIFAKAAHAPFISH 241 (256)
T ss_pred EEEeCCCCCCccccC
Confidence 999999999999985
No 8
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=5.9e-33 Score=216.90 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=97.4
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
+++|||+||++++...|.++++.|.+. |+|+++|+||||.|+.+. ..++++++++|+.++++.+++ ++++|+|||
T Consensus 25 ~~plvllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~--~~~~~~~~~~~~~~~i~~l~~--~~~~LvG~S 99 (276)
T TIGR02240 25 LTPLLIFNGIGANLELVFPFIEALDPD-LEVIAFDVPGVGGSSTPR--HPYRFPGLAKLAARMLDYLDY--GQVNAIGVS 99 (276)
T ss_pred CCcEEEEeCCCcchHHHHHHHHHhccC-ceEEEECCCCCCCCCCCC--CcCcHHHHHHHHHHHHHHhCc--CceEEEEEC
Confidence 479999999999999999999999885 999999999999998765 578999999999999999999 999999999
Q ss_pred hHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 89 SGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|||++++.+|.++|++|+++|+++++...
T Consensus 100 ~GG~va~~~a~~~p~~v~~lvl~~~~~~~ 128 (276)
T TIGR02240 100 WGGALAQQFAHDYPERCKKLILAATAAGA 128 (276)
T ss_pred HHHHHHHHHHHHCHHHhhheEEeccCCcc
Confidence 99999999999999999999999987653
No 9
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.9e-32 Score=214.86 Aligned_cols=111 Identities=25% Similarity=0.398 Sum_probs=101.5
Q ss_pred CcccccCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCC
Q 038482 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 1 l~~~~~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
++|...|++|+|||+||++.+...|..+++.|.+. |+|+++|+||||.|+.+.. ..++++++++++.+++++++. +
T Consensus 26 i~y~~~G~~~~iv~lHG~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~~~~~--~ 101 (286)
T PRK03204 26 IHYIDEGTGPPILLCHGNPTWSFLYRDIIVALRDR-FRCVAPDYLGFGLSERPSG-FGYQIDEHARVIGEFVDHLGL--D 101 (286)
T ss_pred EEEEECCCCCEEEEECCCCccHHHHHHHHHHHhCC-cEEEEECCCCCCCCCCCCc-cccCHHHHHHHHHHHHHHhCC--C
Confidence 46777888899999999999999999999999885 9999999999999987653 368899999999999999999 9
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
+++++||||||.+++.++.++|++|+++|++++..
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 99999999999999999999999999999987654
No 10
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=8.2e-32 Score=211.01 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=94.9
Q ss_pred CcccccCCCceEEEecCCCCcchhhHHH---HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 1 MHVAEKGQGPEILFLYGFPELRYSRCHQ---TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 1 l~~~~~g~~~~lv~ihG~~~~~~~~~~~---~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
++|...|++|+|||+||++++...|..+ +..|.+.||+|+++|+||||.|+.+......+ ..+++|+.++++.++.
T Consensus 22 ~~y~~~g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~-~~~~~~l~~~l~~l~~ 100 (282)
T TIGR03343 22 IHYNEAGNGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRG-LVNARAVKGLMDALDI 100 (282)
T ss_pred EEEEecCCCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCccccc-chhHHHHHHHHHHcCC
Confidence 4677788899999999999988888653 55666668999999999999998764212222 2578999999999999
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
++++++||||||++++.+|.++|++++++|++++..
T Consensus 101 --~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 136 (282)
T TIGR03343 101 --EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGG 136 (282)
T ss_pred --CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCC
Confidence 999999999999999999999999999999999754
No 11
>PLN02578 hydrolase
Probab=99.98 E-value=2.1e-31 Score=214.74 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=102.9
Q ss_pred CcccccCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCC
Q 038482 1 MHVAEKGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 1 l~~~~~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
++|...|++|+|||+||++++...|..+++.|.+. |+|+++|+||||.|+++. ..|+.+.+++|+.++++.+.. +
T Consensus 78 i~Y~~~g~g~~vvliHG~~~~~~~w~~~~~~l~~~-~~v~~~D~~G~G~S~~~~--~~~~~~~~a~~l~~~i~~~~~--~ 152 (354)
T PLN02578 78 IHYVVQGEGLPIVLIHGFGASAFHWRYNIPELAKK-YKVYALDLLGFGWSDKAL--IEYDAMVWRDQVADFVKEVVK--E 152 (354)
T ss_pred EEEEEcCCCCeEEEECCCCCCHHHHHHHHHHHhcC-CEEEEECCCCCCCCCCcc--cccCHHHHHHHHHHHHHHhcc--C
Confidence 36777888999999999999999999999999885 999999999999999876 578999999999999999998 9
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+++++||||||++++.+|.++|++|+++|++++.+.
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~ 188 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQ 188 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCcc
Confidence 999999999999999999999999999999987654
No 12
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.98 E-value=6.3e-31 Score=203.07 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=139.3
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
++|+|||+||++++...|..+++.|.+. |+|+++|+||||.|..+. .++++++++|+.++++.++. ++++|+||
T Consensus 15 ~~~~iv~lhG~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~s~~~~---~~~~~~~~~d~~~~l~~l~~--~~~~lvGh 88 (255)
T PRK10673 15 NNSPIVLVHGLFGSLDNLGVLARDLVND-HDIIQVDMRNHGLSPRDP---VMNYPAMAQDLLDTLDALQI--EKATFIGH 88 (255)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHhhC-CeEEEECCCCCCCCCCCC---CCCHHHHHHHHHHHHHHcCC--CceEEEEE
Confidence 4689999999999999999999999884 999999999999998754 58999999999999999999 89999999
Q ss_pred ChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhc-------C
Q 038482 88 DSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKG-------Y 160 (234)
Q Consensus 88 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 160 (234)
||||++++.+|.++|++|+++|++++++...................... ..........+...... .
T Consensus 89 S~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (255)
T PRK10673 89 SMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAG-----ATTRQQAAAIMRQHLNEEGVIQFLL 163 (255)
T ss_pred CHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcc-----cccHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999986443211110001111111110000 00000000000000000 0
Q ss_pred CCCCCCCCCCCCCCchhH-HHHHHhh--hcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCcccc
Q 038482 161 GHPPDAIIALPGWLSDED-IKYFTTK--FDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFINQ 232 (234)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~~ 232 (234)
..... ......... ...+... +.....+++| ++|+|++|..+ .+.+.+.+|++ ++++++++||++++
T Consensus 164 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~ 238 (255)
T PRK10673 164 KSFVD----GEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQA-RAHVIAGAGHWVHA 238 (255)
T ss_pred hcCCc----ceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCc-EEEEeCCCCCeeec
Confidence 00000 000011111 1111111 1111227899 88999999876 56678888999 99999999999998
Q ss_pred CC
Q 038482 233 EK 234 (234)
Q Consensus 233 e~ 234 (234)
|+
T Consensus 239 ~~ 240 (255)
T PRK10673 239 EK 240 (255)
T ss_pred cC
Confidence 74
No 13
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.97 E-value=5.4e-31 Score=205.68 Aligned_cols=113 Identities=28% Similarity=0.326 Sum_probs=101.8
Q ss_pred CcccccCC--CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 1 MHVAEKGQ--GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 1 l~~~~~g~--~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
++|...|+ +|+|||+||++++...|..+++.|.+. |+|+++|+||||.|+.+.. ..++++++++|+.++++++++
T Consensus 18 ~~~~~~g~~~~~~vv~~hG~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~l~~~i~~~~~- 94 (278)
T TIGR03056 18 WHVQDMGPTAGPLLLLLHGTGASTHSWRDLMPPLARS-FRVVAPDLPGHGFTRAPFR-FRFTLPSMAEDLSALCAAEGL- 94 (278)
T ss_pred EEEEecCCCCCCeEEEEcCCCCCHHHHHHHHHHHhhC-cEEEeecCCCCCCCCCccc-cCCCHHHHHHHHHHHHHHcCC-
Confidence 35666674 789999999999999999999999884 9999999999999987763 468999999999999999999
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
++++|+||||||++++.++.++|++++++|++++....
T Consensus 95 -~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~ 132 (278)
T TIGR03056 95 -SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMP 132 (278)
T ss_pred -CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccc
Confidence 89999999999999999999999999999999876543
No 14
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.97 E-value=8.1e-31 Score=215.35 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=97.2
Q ss_pred cccccCC-----CceEEEecCCCCcchhhHH-HHHHHHh---cCCeEEeecCCCCCCCCcccccccccHHHHHHHHH-HH
Q 038482 2 HVAEKGQ-----GPEILFLYGFPELRYSRCH-QTIALAS---LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLI-GL 71 (234)
Q Consensus 2 ~~~~~g~-----~~~lv~ihG~~~~~~~~~~-~~~~l~~---~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~-~~ 71 (234)
+|...|+ +|+|||+||++++...|.. +++.|.+ .+|+|+++|+||||.|+++.. ..++++++++++. .+
T Consensus 189 ~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~-~~ytl~~~a~~l~~~l 267 (481)
T PLN03087 189 FVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPAD-SLYTLREHLEMIERSV 267 (481)
T ss_pred EEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCC-CcCCHHHHHHHHHHHH
Confidence 4555552 4799999999999999985 4466652 479999999999999987752 5689999999995 89
Q ss_pred HHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
++.+++ ++++++||||||++++.+|.++|++|+++|+++++...
T Consensus 268 l~~lg~--~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~ 311 (481)
T PLN03087 268 LERYKV--KSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYP 311 (481)
T ss_pred HHHcCC--CCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccc
Confidence 999999 99999999999999999999999999999999986554
No 15
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=207.52 Aligned_cols=112 Identities=29% Similarity=0.358 Sum_probs=102.1
Q ss_pred cccccCC--CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc--cccccHHHHHHHHHHHHHhcCC
Q 038482 2 HVAEKGQ--GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE--MTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 2 ~~~~~g~--~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~--~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
+|.+.|+ +|+|||+||++++...|+.+++.|.+ +|+|+++|+||||.|+++.. ...++++++++++.++++++++
T Consensus 118 ~y~~~G~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l~~ 196 (383)
T PLN03084 118 FCVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDELKS 196 (383)
T ss_pred EEEecCCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHhCC
Confidence 5777774 68999999999999999999999987 59999999999999998763 1368999999999999999999
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++++|+|||+||++++.+|.++|++|+++|+++++..
T Consensus 197 --~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 197 --DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred --CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCc
Confidence 9999999999999999999999999999999998653
No 16
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.97 E-value=2.6e-30 Score=199.19 Aligned_cols=113 Identities=25% Similarity=0.351 Sum_probs=101.2
Q ss_pred CcccccCC----CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC
Q 038482 1 MHVAEKGQ----GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 1 l~~~~~g~----~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
++|...|+ +|+|||+||+++++..|..+++.|.+ +|+|+++|+||||.|+.+.. ..++++++++++.++++.++
T Consensus 1 ~~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~i~~~~ 78 (257)
T TIGR03611 1 MHYELHGPPDADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELP-PGYSIAHMADDVLQLLDALN 78 (257)
T ss_pred CEEEEecCCCCCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCc-ccCCHHHHHHHHHHHHHHhC
Confidence 46777773 68999999999999999999999987 59999999999999987542 56899999999999999999
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
. ++++++||||||++++.++.++|++|+++|++++....
T Consensus 79 ~--~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~ 117 (257)
T TIGR03611 79 I--ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRP 117 (257)
T ss_pred C--CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCC
Confidence 9 99999999999999999999999999999999875543
No 17
>PRK06489 hypothetical protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=207.80 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=94.9
Q ss_pred CcccccCC---------CceEEEecCCCCcchhhH--HHHHHH--------HhcCCeEEeecCCCCCCCCccccc-----
Q 038482 1 MHVAEKGQ---------GPEILFLYGFPELRYSRC--HQTIAL--------ASLSYRAVAPDLRGFGDTDELLEM----- 56 (234)
Q Consensus 1 l~~~~~g~---------~~~lv~ihG~~~~~~~~~--~~~~~l--------~~~g~~v~~~D~~G~G~S~~~~~~----- 56 (234)
++|...|+ +|+|||+||++++...|. .+.+.| .+ +|+|+++|+||||.|+.+.+.
T Consensus 52 i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~Via~Dl~GhG~S~~p~~~~~~~~ 130 (360)
T PRK06489 52 LHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDAS-KYFIILPDGIGHGKSSKPSDGLRAAF 130 (360)
T ss_pred EEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCccccc-CCEEEEeCCCCCCCCCCCCcCCCCCC
Confidence 46777775 789999999999988886 555555 44 699999999999999876521
Q ss_pred ccccHHHHHHHHHHHH-HhcCCCCCcEE-EEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 57 TSYTCFHVIGDLIGLI-DLVAPNDEKVF-VVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 57 ~~~~~~~~a~dl~~~~-~~~~~~~~~~~-l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
..++++++++++.+++ +++++ ++++ |+||||||++++.+|.++|++|+++|++++.+
T Consensus 131 ~~~~~~~~a~~~~~~l~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~ 189 (360)
T PRK06489 131 PRYDYDDMVEAQYRLVTEGLGV--KHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQP 189 (360)
T ss_pred CcccHHHHHHHHHHHHHHhcCC--CceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCc
Confidence 1489999999988865 88999 8885 89999999999999999999999999998754
No 18
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.97 E-value=5.6e-30 Score=196.34 Aligned_cols=100 Identities=18% Similarity=0.106 Sum_probs=91.3
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
+|+|||+||+++++..|..+++.| + +|+|+++|+||||.|+.+. ..+++++++|+.++++.+++ ++++++|||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~l~~~l~~~~~--~~~~lvG~S 74 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAIS---VDGFADVSRLLSQTLQSYNI--LPYWLVGYS 74 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCcc---ccCHHHHHHHHHHHHHHcCC--CCeEEEEEC
Confidence 578999999999999999999988 4 4999999999999998765 34899999999999999999 999999999
Q ss_pred hHHHHHHHHHHhccc-cccceeeeccCC
Q 038482 89 SGTYMACFLCSFRAN-RIKALVNLSVVF 115 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~-~v~~lvl~~~~~ 115 (234)
|||.+++.+|.++|+ +|+++|++++.+
T Consensus 75 ~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 75 LGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 999999999999866 499999987654
No 19
>PHA02857 monoglyceride lipase; Provisional
Probab=99.97 E-value=8.7e-30 Score=199.05 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=131.3
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCCcEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDEKVFV 84 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~~~~l 84 (234)
.+.|+++||+++++..|..+++.|.+.||+|+++|+||||.|++... ...++.++++|+.+.++.+ .. ++++|
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~-~~~~~~~~~~d~~~~l~~~~~~~~~--~~~~l 101 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKM-MIDDFGVYVRDVVQHVVTIKSTYPG--VPVFL 101 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccC-CcCCHHHHHHHHHHHHHHHHhhCCC--CCEEE
Confidence 45666779999999999999999998899999999999999976431 2346677778887777654 34 68999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCccccccccc----CcchHHHHHHhhhhcC
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIH----EPGEIEAQFEQISKGY 160 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 160 (234)
+||||||++++.+|.++|++++++|++++.............................+. .... ....... .
T Consensus 102 vG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ 177 (276)
T PHA02857 102 LGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYPNKIVGKLCPESVSRDM-DEVYKYQ---Y 177 (276)
T ss_pred EEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCCCCccCCCCHhhccCCH-HHHHHHh---c
Confidence 999999999999999999999999999986543111000000001111110000000000 0000 0110000 1
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCC-CCCceeEEeCCCCCccccCC
Q 038482 161 GHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDV-PLLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~-~~~~~~~~~~~agH~~~~e~ 234 (234)
....... .....+..+..............+++| ++|+|++|.++ .+.+.+.+ ++. ++.+++++||+++.|+
T Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~-~~~~~~~~gH~~~~e~ 255 (276)
T PHA02857 178 DPLVNHE-KIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNR-EIKIYEGAKHHLHKET 255 (276)
T ss_pred CCCccCC-CccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCc-eEEEeCCCcccccCCc
Confidence 1000000 000000011111000111112228999 88999999997 44555555 467 9999999999999874
No 20
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=4.6e-30 Score=206.82 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=92.3
Q ss_pred CceEEEecCCCCcchh-hHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC----CCcEE
Q 038482 9 GPEILFLYGFPELRYS-RCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN----DEKVF 83 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~----~~~~~ 83 (234)
.++|||+||++++... |..+++.|.++||+|+++|+||||.|+.+.. ...+++++++|+.++++.+... +.+++
T Consensus 87 ~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~ 165 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHG-YIPSFDDLVDDVIEHYSKIKGNPEFRGLPSF 165 (349)
T ss_pred CeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 4689999999988765 6889999998899999999999999987542 3468999999999999877541 13799
Q ss_pred EEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 84 VVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
|+||||||++++.++.++|++++++|++++...
T Consensus 166 LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~ 198 (349)
T PLN02385 166 LFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK 198 (349)
T ss_pred EEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence 999999999999999999999999999997654
No 21
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=6.4e-30 Score=195.68 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=97.0
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccc-cc-ccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL-EM-TSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-~~-~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
+++|+|||||++.+...|-...+.|++. ++|+++|++|+|.|++|. .. ..-....+++-++++....++ ++.+|+
T Consensus 89 ~~~plVliHGyGAg~g~f~~Nf~~La~~-~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L--~Kmilv 165 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLGLFFRNFDDLAKI-RNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGL--EKMILV 165 (365)
T ss_pred CCCcEEEEeccchhHHHHHHhhhhhhhc-CceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCC--cceeEe
Confidence 4689999999999999999999999994 999999999999999988 11 222345889999999999999 999999
Q ss_pred EeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 86 GHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|||+||+++..||.+||++|+.|||++|...+
T Consensus 166 GHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~ 197 (365)
T KOG4409|consen 166 GHSFGGYLAAKYALKYPERVEKLILVSPWGFP 197 (365)
T ss_pred eccchHHHHHHHHHhChHhhceEEEecccccc
Confidence 99999999999999999999999999998877
No 22
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.97 E-value=7.9e-29 Score=192.84 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=97.8
Q ss_pred ccccc-CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC-CCC
Q 038482 2 HVAEK-GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA-PND 79 (234)
Q Consensus 2 ~~~~~-g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~-~~~ 79 (234)
+|.+. +++|+|||+||++++...|.++++.|.+.||+|+++|+||||.|..... ..++++++++++.++++.+. .
T Consensus 10 ~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-~~~~~~~~~~~l~~~i~~l~~~-- 86 (273)
T PLN02211 10 TDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-SVTTFDEYNKPLIDFLSSLPEN-- 86 (273)
T ss_pred ccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-cCCCHHHHHHHHHHHHHhcCCC--
Confidence 45555 5678999999999999999999999988789999999999998754431 34899999999999999984 5
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
++++|+||||||++++.++.++|++|+++|++++..
T Consensus 87 ~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~ 122 (273)
T PLN02211 87 EKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATM 122 (273)
T ss_pred CCEEEEEECchHHHHHHHHHhChhheeEEEEecccc
Confidence 799999999999999999999999999999998754
No 23
>PRK10749 lysophospholipase L2; Provisional
Probab=99.97 E-value=5.8e-29 Score=198.85 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=94.3
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccccc----ccccHHHHHHHHHHHHHhc----CCCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEM----TSYTCFHVIGDLIGLIDLV----APND 79 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~a~dl~~~~~~~----~~~~ 79 (234)
++++||++||++++...|..++..|.++||+|+++|+||||.|+++... ..++++++++|+.++++.+ +.
T Consensus 53 ~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-- 130 (330)
T PRK10749 53 HDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPY-- 130 (330)
T ss_pred CCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCC--
Confidence 3579999999999999999999999888999999999999999865311 2358999999999999876 56
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.+++++||||||.+++.++.++|++++++|+++|...
T Consensus 131 ~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 131 RKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred CCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 7999999999999999999999999999999987653
No 24
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.96 E-value=2.6e-29 Score=192.45 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=99.7
Q ss_pred CcccccCC---CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 1 MHVAEKGQ---GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 1 l~~~~~g~---~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
++|...|+ +|+|||+||++.+...|..+++.|.+ ||+|+++|+||||.|+.+. ..++++++++|+.++++.++.
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~--~~~~~~~~~~~~~~~i~~~~~ 78 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPE--GPYSIEDLADDVLALLDHLGI 78 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHhCC
Confidence 46766663 47899999999999999999999976 6999999999999997665 578999999999999999998
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++++++||||||++++.+|.++|++++++|+++++..
T Consensus 79 --~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~ 115 (251)
T TIGR02427 79 --ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAK 115 (251)
T ss_pred --CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccc
Confidence 8999999999999999999999999999999986543
No 25
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.96 E-value=7.2e-30 Score=192.58 Aligned_cols=205 Identities=27% Similarity=0.359 Sum_probs=137.6
Q ss_pred EEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH
Q 038482 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT 91 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg 91 (234)
|||+||++++...|..+++.|+ +||+|+++|+||+|.|+.+.....++++++++|+.++++.++. ++++++|||+||
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~lvG~S~Gg 77 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGI--KKVILVGHSMGG 77 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTT--SSEEEEEETHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccc--cccccccccccc
Confidence 7999999999999999999996 4899999999999999987743578999999999999999999 999999999999
Q ss_pred HHHHHHHHhccccccceeeeccCCCCCCCC---CchhHHHHhhhhcCc-------ccccccccCcchHHHHHHhhhhcCC
Q 038482 92 YMACFLCSFRANRIKALVNLSVVFNPNTSV---SNSNWIKALGAYYGD-------DYYIGGIHEPGEIEAQFEQISKGYG 161 (234)
Q Consensus 92 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (234)
.+++.++.++|++|+++|++++........ ....+.......... ..+.... ........+.....
T Consensus 78 ~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 153 (228)
T PF12697_consen 78 MIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWF-DGDEPEDLIRSSRR--- 153 (228)
T ss_dssp HHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHH---
T ss_pred ccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccc-cccccccccccccc---
Confidence 999999999999999999999877531100 000011111000000 0000000 00000000000000
Q ss_pred CCCCCCCCCCCCCch-hHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccccCC
Q 038482 162 HPPDAIIALPGWLSD-EDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~~e~ 234 (234)
........ .........+.. +++| ++++|++|.++ .+.+.+..+++ ++.+++++||++++|+
T Consensus 154 -------~~~~~~~~~~~~~~~~~~~~~---~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~~~ 221 (228)
T PF12697_consen 154 -------ALAEYLRSNLWQADLSEALPR---IKVPVLVIHGEDDPIVPPESAEELADKLPNA-ELVVIPGAGHFLFLEQ 221 (228)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHG---SSSEEEEEEETTSSSSHHHHHHHHHHHSTTE-EEEEETTSSSTHHHHS
T ss_pred -------ccccccccccccccccccccc---cCCCeEEeecCCCCCCCHHHHHHHHHHCCCC-EEEEECCCCCccHHHC
Confidence 00000000 011111122222 8999 88999999987 56677778999 9999999999999874
No 26
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.96 E-value=5.9e-29 Score=189.99 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=87.6
Q ss_pred CCC-ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 7 GQG-PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 7 g~~-~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
|++ |+|||+||++++...|..+++.|.+ +|+|+++|+||+|.|+... .++++++++++.+.+ . ++++++
T Consensus 1 g~g~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~---~~~~~~~~~~~~~~~----~--~~~~lv 70 (245)
T TIGR01738 1 GQGNVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFG---PLSLADAAEAIAAQA----P--DPAIWL 70 (245)
T ss_pred CCCCceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCC---CcCHHHHHHHHHHhC----C--CCeEEE
Confidence 456 8999999999999999999999987 5999999999999987643 468888888876543 3 689999
Q ss_pred EeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 86 GHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
||||||.+++.++.++|++++++|++++.+.
T Consensus 71 G~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~ 101 (245)
T TIGR01738 71 GWSLGGLVALHIAATHPDRVRALVTVASSPC 101 (245)
T ss_pred EEcHHHHHHHHHHHHCHHhhheeeEecCCcc
Confidence 9999999999999999999999999987654
No 27
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.96 E-value=2.9e-29 Score=201.68 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=93.3
Q ss_pred CcccccCC-CceEEEecCCCCcch------------hhHHHHH---HHHhcCCeEEeecCCCCCCCCcccccccccHHHH
Q 038482 1 MHVAEKGQ-GPEILFLYGFPELRY------------SRCHQTI---ALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHV 64 (234)
Q Consensus 1 l~~~~~g~-~~~lv~ihG~~~~~~------------~~~~~~~---~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~ 64 (234)
|+|+..|+ ++|+||+||++++.. .|.+++. .|...+|+||++|+||||.|.. ..++++++
T Consensus 48 l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~----~~~~~~~~ 123 (343)
T PRK08775 48 LRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLD----VPIDTADQ 123 (343)
T ss_pred EEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCC----CCCCHHHH
Confidence 46888885 767888888877766 6888886 5743359999999999998842 35788999
Q ss_pred HHHHHHHHHhcCCCCCcE-EEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 65 IGDLIGLIDLVAPNDEKV-FVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 65 a~dl~~~~~~~~~~~~~~-~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++|+.++++++++ +++ +|+||||||++++.+|.++|++|+++|++++...
T Consensus 124 a~dl~~ll~~l~l--~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~ 174 (343)
T PRK08775 124 ADAIALLLDALGI--ARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHR 174 (343)
T ss_pred HHHHHHHHHHcCC--CcceEEEEECHHHHHHHHHHHHChHhhheEEEECcccc
Confidence 9999999999999 775 7999999999999999999999999999998654
No 28
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.96 E-value=4.9e-29 Score=190.68 Aligned_cols=105 Identities=26% Similarity=0.320 Sum_probs=95.6
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHH-HHHHHHhcCCCCCcEEEEEe
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD-LIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~d-l~~~~~~~~~~~~~~~l~Gh 87 (234)
+|+|||+||++++...|..+++.|. +||+|+++|+||+|.|+.+.....+++++++++ +..+++.++. ++++++||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~G~ 77 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGI--EPFFLVGY 77 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCC--CeEEEEEe
Confidence 4799999999999999999999998 479999999999999988764467899999999 7888888888 89999999
Q ss_pred ChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 88 DSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 88 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
||||.+++.+|.++|++|++++++++...
T Consensus 78 S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 78 SMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred ccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 99999999999999999999999987654
No 29
>PRK07581 hypothetical protein; Validated
Probab=99.96 E-value=6.6e-29 Score=199.48 Aligned_cols=114 Identities=13% Similarity=0.166 Sum_probs=87.7
Q ss_pred CcccccCC----C-ceEEEecCCCCcchhhHHHH---HHHHhcCCeEEeecCCCCCCCCcccc-cccccHHH-----HHH
Q 038482 1 MHVAEKGQ----G-PEILFLYGFPELRYSRCHQT---IALASLSYRAVAPDLRGFGDTDELLE-MTSYTCFH-----VIG 66 (234)
Q Consensus 1 l~~~~~g~----~-~~lv~ihG~~~~~~~~~~~~---~~l~~~g~~v~~~D~~G~G~S~~~~~-~~~~~~~~-----~a~ 66 (234)
++|...|+ + |+||+.||++++...|..++ +.|...+|+||++|+||||.|+.+.. ...+++++ +++
T Consensus 28 l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~ 107 (339)
T PRK07581 28 LAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYD 107 (339)
T ss_pred EEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHH
Confidence 45776664 2 45777777777777777654 46765469999999999999987652 12345443 566
Q ss_pred HHHH----HHHhcCCCCCc-EEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 67 DLIG----LIDLVAPNDEK-VFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 67 dl~~----~~~~~~~~~~~-~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
|+.+ +++++++ ++ ++|+||||||++|+.+|.++|++|+++|++++...
T Consensus 108 ~~~~~~~~l~~~lgi--~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~ 160 (339)
T PRK07581 108 NVRAQHRLLTEKFGI--ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAK 160 (339)
T ss_pred HHHHHHHHHHHHhCC--CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCC
Confidence 6665 7788999 99 48999999999999999999999999999987654
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=1.4e-28 Score=197.00 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=90.5
Q ss_pred CceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC----CCcEE
Q 038482 9 GPEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN----DEKVF 83 (234)
Q Consensus 9 ~~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~----~~~~~ 83 (234)
.++|||+||++++. ..|..++..|.++||+|+++|+||||.|+.... ...+++.+++|+.++++.+... +.+++
T Consensus 59 ~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~-~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~ 137 (330)
T PLN02298 59 RALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRA-YVPNVDLVVEDCLSFFNSVKQREEFQGLPRF 137 (330)
T ss_pred ceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccc-cCCCHHHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 45699999998764 356777888988899999999999999976542 3568899999999999987531 14799
Q ss_pred EEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 84 VVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|+||||||++++.++.++|++|+++|++++....
T Consensus 138 l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (330)
T PLN02298 138 LYGESMGGAICLLIHLANPEGFDGAVLVAPMCKI 171 (330)
T ss_pred EEEecchhHHHHHHHhcCcccceeEEEecccccC
Confidence 9999999999999999999999999999986543
No 31
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=192.78 Aligned_cols=108 Identities=25% Similarity=0.305 Sum_probs=95.7
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
++++||++||++.+...|+.++..|.++ |++|+++|++|+|.++..+....|+..++++.+..++..... ++++++|
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~--~~~~lvg 134 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFV--EPVSLVG 134 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcC--cceEEEE
Confidence 5799999999999999999999999886 599999999999955544433569999999999999999998 8999999
Q ss_pred eChHHHHHHHHHHhcccccccee---eeccCCCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALV---NLSVVFNP 117 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lv---l~~~~~~~ 117 (234)
||+||.+|+.+|+.+|+.|+++| +++++...
T Consensus 135 hS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~ 168 (326)
T KOG1454|consen 135 HSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYS 168 (326)
T ss_pred eCcHHHHHHHHHHhCcccccceeeeccccccccc
Confidence 99999999999999999999999 55555544
No 32
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.95 E-value=6.1e-28 Score=188.74 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=90.0
Q ss_pred CceEEEecCCCCcchh-hHHHHHHHHhcCCeEEeecCCCCCCCCcccccc-cccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 9 GPEILFLYGFPELRYS-RCHQTIALASLSYRAVAPDLRGFGDTDELLEMT-SYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~-~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
+++|||+||++++... |..+...|.+.||+|+++|+||+|.|+.+.... .++++++++|+.++++.++. ++++++|
T Consensus 25 ~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liG 102 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKLGL--DKFYLLG 102 (288)
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHcCC--CcEEEEE
Confidence 6899999998766654 455555666558999999999999998765322 48999999999999999999 8999999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
|||||.+++.++.++|++++++|++++..
T Consensus 103 ~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 103 HSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred eehHHHHHHHHHHhCccccceeeEecccc
Confidence 99999999999999999999999998654
No 33
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.95 E-value=3.7e-27 Score=186.70 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=94.6
Q ss_pred CcccccCC--CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 1 MHVAEKGQ--GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 1 l~~~~~g~--~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
|+|...|+ +++|||+||++++...+ .+...+...+|+|+++|+||||.|+.+.....++.+++++|+..+++.+++
T Consensus 17 l~y~~~g~~~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l~~- 94 (306)
T TIGR01249 17 LYYEQSGNPDGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREKLGI- 94 (306)
T ss_pred EEEEECcCCCCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHcCC-
Confidence 45666775 78999999998876544 344455445799999999999999876533457889999999999999999
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++++++||||||++++.++.++|++|+++|++++...
T Consensus 95 -~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 95 -KNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLL 131 (306)
T ss_pred -CCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccC
Confidence 8999999999999999999999999999999987553
No 34
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.95 E-value=8.2e-27 Score=190.42 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=91.3
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccc---cccHHHHHHHHHHHHHhcCCCCCcEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMT---SYTCFHVIGDLIGLIDLVAPNDEKVFV 84 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~---~~~~~~~a~dl~~~~~~~~~~~~~~~l 84 (234)
++|+|||+||++++...|...++.|.+. |+|+++|+||||.|+++.... ....+.+++++.++++.+++ ++++|
T Consensus 104 ~~p~vvllHG~~~~~~~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~--~~~~l 180 (402)
T PLN02894 104 DAPTLVMVHGYGASQGFFFRNFDALASR-FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNL--SNFIL 180 (402)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHHhC-CEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHcCC--CCeEE
Confidence 4689999999999999999999999885 999999999999998765110 11123467788888898999 99999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+||||||++++.+|.++|++|+++|++++....
T Consensus 181 vGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~ 213 (402)
T PLN02894 181 LGHSFGGYVAAKYALKHPEHVQHLILVGPAGFS 213 (402)
T ss_pred EEECHHHHHHHHHHHhCchhhcEEEEECCcccc
Confidence 999999999999999999999999999986654
No 35
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.95 E-value=2.4e-27 Score=191.12 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=94.3
Q ss_pred CcccccCC-----CceEEEecCCCCcch-----------hhHHHH---HHHHhcCCeEEeecCCC--CCCCCccc----c
Q 038482 1 MHVAEKGQ-----GPEILFLYGFPELRY-----------SRCHQT---IALASLSYRAVAPDLRG--FGDTDELL----E 55 (234)
Q Consensus 1 l~~~~~g~-----~~~lv~ihG~~~~~~-----------~~~~~~---~~l~~~g~~v~~~D~~G--~G~S~~~~----~ 55 (234)
|+|...|. +++|||+||++++.. .|+.++ ..|...+|+|+++|+|| ||.|.... .
T Consensus 18 ~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~ 97 (351)
T TIGR01392 18 VAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGG 97 (351)
T ss_pred EEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCC
Confidence 46777663 579999999999763 478876 35655579999999999 56554321 0
Q ss_pred ------cccccHHHHHHHHHHHHHhcCCCCCc-EEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 56 ------MTSYTCFHVIGDLIGLIDLVAPNDEK-VFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 56 ------~~~~~~~~~a~dl~~~~~~~~~~~~~-~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
...++++++++|+.++++++++ ++ ++|+||||||++++.+|.++|++|+++|++++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 98 RPYGSDFPLITIRDDVKAQKLLLDHLGI--EQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CcCCCCCCCCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 1258999999999999999999 88 999999999999999999999999999999986643
No 36
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.95 E-value=4.4e-27 Score=191.09 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=93.2
Q ss_pred CcccccCC-----CceEEEecCCCCcchh-------------hHHHHH---HHHhcCCeEEeecCCCC-CCCCcccc--c
Q 038482 1 MHVAEKGQ-----GPEILFLYGFPELRYS-------------RCHQTI---ALASLSYRAVAPDLRGF-GDTDELLE--M 56 (234)
Q Consensus 1 l~~~~~g~-----~~~lv~ihG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~D~~G~-G~S~~~~~--~ 56 (234)
++|...|+ +|+|||+||++++... |+.++. .|...+|+|+++|++|+ |.|+.+.. +
T Consensus 35 ~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~ 114 (379)
T PRK00175 35 LAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINP 114 (379)
T ss_pred EEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCC
Confidence 46777773 5899999999999985 666652 44333699999999993 54543221 0
Q ss_pred ----------ccccHHHHHHHHHHHHHhcCCCCCc-EEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 57 ----------TSYTCFHVIGDLIGLIDLVAPNDEK-VFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 57 ----------~~~~~~~~a~dl~~~~~~~~~~~~~-~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
..++++++++++.++++++++ ++ ++|+||||||++++.+|.++|++|+++|++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (379)
T PRK00175 115 DTGKPYGSDFPVITIRDWVRAQARLLDALGI--TRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARL 184 (379)
T ss_pred CCCCcccCCCCcCCHHHHHHHHHHHHHHhCC--CCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCccc
Confidence 158999999999999999999 88 599999999999999999999999999999976643
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.95 E-value=2.9e-26 Score=186.37 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=98.6
Q ss_pred cccccC--CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCC
Q 038482 2 HVAEKG--QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPND 79 (234)
Q Consensus 2 ~~~~~g--~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~ 79 (234)
+|...| ++++|||+||++++...|..+++.|.+. |+|+++|+||||.|.... ...+++++++++.++++.++.
T Consensus 122 ~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~--~~~~~~~~~~~~~~~~~~~~~-- 196 (371)
T PRK14875 122 RYLRLGEGDGTPVVLIHGFGGDLNNWLFNHAALAAG-RPVIALDLPGHGASSKAV--GAGSLDELAAAVLAFLDALGI-- 196 (371)
T ss_pred EEecccCCCCCeEEEECCCCCccchHHHHHHHHhcC-CEEEEEcCCCCCCCCCCC--CCCCHHHHHHHHHHHHHhcCC--
Confidence 455555 3689999999999999999999999885 999999999999997654 467899999999999999998
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.+++++||||||++++.+|.++|++++++|++++...
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~ 233 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGL 233 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCc
Confidence 8999999999999999999999999999999987643
No 38
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.94 E-value=9e-26 Score=176.71 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=140.1
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCC-cccccccccHHHHHHHHHHHHHhcCC--CCCcEEEEE
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD-ELLEMTSYTCFHVIGDLIGLIDLVAP--NDEKVFVVG 86 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~-~~~~~~~~~~~~~a~dl~~~~~~~~~--~~~~~~l~G 86 (234)
.+||++||++.+..-|..+++.|...||.|+++|+||||.|. .... ...++.++.+|+..+++.... .+.+++|+|
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg-~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~g 113 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRG-HVDSFADYVDDLDAFVETIAEPDPGLPVFLLG 113 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcC-CchhHHHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence 589999999999999999999999999999999999999998 3332 445699999999999988753 247999999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCc---chHHHHHHhhhhcCCCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEP---GEIEAQFEQISKGYGHP 163 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 163 (234)
|||||.|++.++.+++.+++++|+.+|.............................+... ........+.......+
T Consensus 114 HSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~ 193 (298)
T COG2267 114 HSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAY 193 (298)
T ss_pred eCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHH
Confidence 999999999999999999999999998776643011100111111111111111111110 00011111111111111
Q ss_pred CCCCC-----CCCCCCchhHHHHHH-hhhcccCCcccc-eEeecCCccccc--cccc-----cCCCCCceeEEeCCCCCc
Q 038482 164 PDAII-----ALPGWLSDEDIKYFT-TKFDKNALLKES-TITKGVKEYIHK--GEFR-----SDVPLLEEVTIMEGVGHF 229 (234)
Q Consensus 164 ~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~i~~P-lli~G~~D~~~~--~~~~-----~~~~~~~~~~~~~~agH~ 229 (234)
...+. ....|+.. .+.... ........+++| +|++|++|.++. +... ...++. ++++++|+.|.
T Consensus 194 ~~dP~~~~~~~~~~w~~~-~~~a~~~~~~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~-~~~~~~g~~He 271 (298)
T COG2267 194 EADPLIGVGGPVSRWVDL-ALLAGRVPALRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDK-ELKVIPGAYHE 271 (298)
T ss_pred hcCCccccCCccHHHHHH-HHHhhcccchhccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCc-eEEecCCcchh
Confidence 11110 11111111 111111 111122238999 889999999985 3444 234666 99999999999
Q ss_pred cccCC
Q 038482 230 INQEK 234 (234)
Q Consensus 230 ~~~e~ 234 (234)
++.|.
T Consensus 272 ~~~E~ 276 (298)
T COG2267 272 LLNEP 276 (298)
T ss_pred hhcCc
Confidence 99874
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.94 E-value=5.8e-27 Score=217.22 Aligned_cols=111 Identities=27% Similarity=0.313 Sum_probs=98.2
Q ss_pred cccccCC---CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc------cccccHHHHHHHHHHHH
Q 038482 2 HVAEKGQ---GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE------MTSYTCFHVIGDLIGLI 72 (234)
Q Consensus 2 ~~~~~g~---~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~------~~~~~~~~~a~dl~~~~ 72 (234)
+|+..|+ +++|||+||++++...|.++++.|.+. |+|+++|+||||.|+.+.. ...++++++++++.+++
T Consensus 1361 ~~~~~G~~~~~~~vVllHG~~~s~~~w~~~~~~L~~~-~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll 1439 (1655)
T PLN02980 1361 KVHEVGQNAEGSVVLFLHGFLGTGEDWIPIMKAISGS-ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLI 1439 (1655)
T ss_pred EEEecCCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHH
Confidence 3455553 689999999999999999999999885 9999999999999976431 13578999999999999
Q ss_pred HhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 73 DLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 73 ~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
++++. ++++|+||||||++++.++.++|++|+++|++++.+
T Consensus 1440 ~~l~~--~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p 1480 (1655)
T PLN02980 1440 EHITP--GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSP 1480 (1655)
T ss_pred HHhCC--CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCC
Confidence 99999 999999999999999999999999999999998754
No 40
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.93 E-value=3.4e-25 Score=179.80 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=89.6
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC--CCcEEEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN--DEKVFVVG 86 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~--~~~~~l~G 86 (234)
.++|||+||++++...|..+++.|.++||+|+++|+||||.|+.... ...+++.+++|+.++++.+... +.+++++|
T Consensus 136 ~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~-~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 214 (395)
T PLN02652 136 RGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG-YVPSLDYVVEDTEAFLEKIRSENPGVPCFLFG 214 (395)
T ss_pred ceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 36899999999999999999999998899999999999999987642 3458889999999999887531 14799999
Q ss_pred eChHHHHHHHHHHhcc---ccccceeeeccCCC
Q 038482 87 HDSGTYMACFLCSFRA---NRIKALVNLSVVFN 116 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~ 116 (234)
|||||.+++.++. +| ++++++|+.+|...
T Consensus 215 hSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~ 246 (395)
T PLN02652 215 HSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALR 246 (395)
T ss_pred ECHHHHHHHHHHh-ccCcccccceEEEECcccc
Confidence 9999999997764 55 48999999887653
No 41
>PLN02511 hydrolase
Probab=99.93 E-value=8.9e-26 Score=183.64 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCceEEEecCCCCcchh-h-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC--CCcEE
Q 038482 8 QGPEILFLYGFPELRYS-R-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN--DEKVF 83 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~-~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~--~~~~~ 83 (234)
++|+||++||+++++.. | ..++..+.+.||+|+++|+||||.|.... .......+++|+.++++.+... +.+++
T Consensus 99 ~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~--~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~ 176 (388)
T PLN02511 99 DAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTT--PQFYSASFTGDLRQVVDHVAGRYPSANLY 176 (388)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCC--cCEEcCCchHHHHHHHHHHHHHCCCCCEE
Confidence 46899999999776543 5 56777777779999999999999997654 2223356778888888776542 15899
Q ss_pred EEEeChHHHHHHHHHHhcccc--ccceeeeccCC
Q 038482 84 VVGHDSGTYMACFLCSFRANR--IKALVNLSVVF 115 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~--v~~lvl~~~~~ 115 (234)
++||||||++++.++.++|++ |.++++++++.
T Consensus 177 lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 177 AAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred EEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 999999999999999999987 88888887654
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=155.88 Aligned_cols=205 Identities=18% Similarity=0.160 Sum_probs=135.2
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc---CCCCCcEE
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV---APNDEKVF 83 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~---~~~~~~~~ 83 (234)
|.+.+|+|+||+.|+....+.+.++|+++||.|++|.+||||.....- -..+.++|-+|+.+..+++ +- +++.
T Consensus 13 ~G~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~f--l~t~~~DW~~~v~d~Y~~L~~~gy--~eI~ 88 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDF--LKTTPRDWWEDVEDGYRDLKEAGY--DEIA 88 (243)
T ss_pred cCCEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHH--hcCCHHHHHHHHHHHHHHHHHcCC--CeEE
Confidence 334899999999999999999999999999999999999999876544 4567888888887777665 56 8999
Q ss_pred EEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCC
Q 038482 84 VVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHP 163 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++|.||||.+++.+|.++| ++++|.++++......... ++.+..++..... .....+...+....++.
T Consensus 89 v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~i---ie~~l~y~~~~kk-~e~k~~e~~~~e~~~~~------ 156 (243)
T COG1647 89 VVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRII---IEGLLEYFRNAKK-YEGKDQEQIDKEMKSYK------ 156 (243)
T ss_pred EEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhh---hHHHHHHHHHhhh-ccCCCHHHHHHHHHHhh------
Confidence 9999999999999999998 9999999988875332222 3333333211000 00111112222222221
Q ss_pred CCCCCCCCCCCchhHHHHH-HhhhcccCCcccc-eEeecCCccccccc----cccC-CCCCceeEEeCCCCCccccC
Q 038482 164 PDAIIALPGWLSDEDIKYF-TTKFDKNALLKES-TITKGVKEYIHKGE----FRSD-VPLLEEVTIMEGVGHFINQE 233 (234)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~P-lli~G~~D~~~~~~----~~~~-~~~~~~~~~~~~agH~~~~e 233 (234)
...+.+...+... .......+.|..| ++++|++|..+... +... .++..++..++++||.+-++
T Consensus 157 ------~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D 227 (243)
T COG1647 157 ------DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLD 227 (243)
T ss_pred ------cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecc
Confidence 0011111111111 1111222228999 88999999998322 2222 23335999999999988665
No 43
>PRK05855 short chain dehydrogenase; Validated
Probab=99.93 E-value=7e-25 Score=188.00 Aligned_cols=110 Identities=27% Similarity=0.424 Sum_probs=92.1
Q ss_pred CcccccCC--CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 1 MHVAEKGQ--GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 1 l~~~~~g~--~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
|+|...|+ +|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+.....++++++++|+.+++++++.
T Consensus 15 l~~~~~g~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~~- 92 (582)
T PRK05855 15 LAVYEWGDPDRPTVVLVHGYPDNHEVWDGVAPLLAD-RFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAVSP- 92 (582)
T ss_pred EEEEEcCCCCCCeEEEEcCCCchHHHHHHHHHHhhc-ceEEEEecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHhCC-
Confidence 35666663 68999999999999999999999965 699999999999999876644578999999999999999987
Q ss_pred CCc-EEEEEeChHHHHHHHHHHh--ccccccceeeecc
Q 038482 79 DEK-VFVVGHDSGTYMACFLCSF--RANRIKALVNLSV 113 (234)
Q Consensus 79 ~~~-~~l~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~ 113 (234)
.+ ++|+||||||++++.++.+ .++++..++.+++
T Consensus 93 -~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~ 129 (582)
T PRK05855 93 -DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSG 129 (582)
T ss_pred -CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccC
Confidence 55 9999999999999888876 3455555555543
No 44
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.92 E-value=6.9e-24 Score=162.19 Aligned_cols=221 Identities=16% Similarity=0.154 Sum_probs=147.2
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC--CCCcEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP--NDEKVFV 84 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~--~~~~~~l 84 (234)
+.||++++||+.++..+|+.+...|+.. +..++++|.|.||.|.... .++..++++|+..+++..+. ...++++
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~---~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l 127 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT---VHNYEAMAEDVKLFIDGVGGSTRLDPVVL 127 (315)
T ss_pred CCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccc---ccCHHHHHHHHHHHHHHcccccccCCcee
Confidence 5799999999999999999999999875 7899999999999998866 56799999999999998852 1279999
Q ss_pred EEeChHH-HHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhc----
Q 038482 85 VGHDSGT-YMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKG---- 159 (234)
Q Consensus 85 ~GhS~Gg-~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (234)
+|||||| .+++.++..+|+.+.++|+++-++.. .........+.++..............+......+......
T Consensus 128 ~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~-~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~~d~~~~ 206 (315)
T KOG2382|consen 128 LGHSMGGVKVAMAETLKKPDLIERLIVEDISPGG-VGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVGFDNLVR 206 (315)
T ss_pred cccCcchHHHHHHHHHhcCcccceeEEEecCCcc-CCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHhcchHHH
Confidence 9999999 77788888899999999999866642 11122222344433322221111111111111111111000
Q ss_pred ------CCCCCCCCCCCCCCCchhHHHHHHhhhccc--------CCcccc-eEeecCCcccc----ccccccCCCCCcee
Q 038482 160 ------YGHPPDAIIALPGWLSDEDIKYFTTKFDKN--------ALLKES-TITKGVKEYIH----KGEFRSDVPLLEEV 220 (234)
Q Consensus 160 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~ 220 (234)
++. ............-..+......+... .....| +++.|.++..+ ...+.+.+|+. ++
T Consensus 207 ~fi~~nl~~-~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~-e~ 284 (315)
T KOG2382|consen 207 QFILTNLKK-SPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNV-EV 284 (315)
T ss_pred HHHHHhcCc-CCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhccch-he
Confidence 111 11110222333444444333332111 114556 77999999987 45688889999 99
Q ss_pred EEeCCCCCccccCC
Q 038482 221 TIMEGVGHFINQEK 234 (234)
Q Consensus 221 ~~~~~agH~~~~e~ 234 (234)
+.+++||||+|+|+
T Consensus 285 ~~ld~aGHwVh~E~ 298 (315)
T KOG2382|consen 285 HELDEAGHWVHLEK 298 (315)
T ss_pred eecccCCceeecCC
Confidence 99999999999986
No 45
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.92 E-value=5.1e-24 Score=160.58 Aligned_cols=215 Identities=14% Similarity=0.131 Sum_probs=144.0
Q ss_pred ceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC----CCcEEE
Q 038482 10 PEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN----DEKVFV 84 (234)
Q Consensus 10 ~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~----~~~~~l 84 (234)
-.|+++||+++.. ..|..++..|++.||.|+++|++|||.|++.. ....+++..++|+..+++....+ +.+..|
T Consensus 55 ~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~-~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL 133 (313)
T KOG1455|consen 55 GLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLH-AYVPSFDLVVDDVISFFDSIKEREENKGLPRFL 133 (313)
T ss_pred eEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCc-ccCCcHHHHHHHHHHHHHHHhhccccCCCCeee
Confidence 3788999999876 67888999999999999999999999999765 26679999999999999864221 358999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCch----hHHHHhhhhcCcccccccccCcchHHHHHHhhhhc-
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNS----NWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKG- 159 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (234)
+||||||+|++.++.++|+...++|+++|.....+...+. ..+..+...++.+.... ........++.-..+
T Consensus 134 ~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~liP~wk~vp---~~d~~~~~~kdp~~r~ 210 (313)
T KOG1455|consen 134 FGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLSKLIPTWKIVP---TKDIIDVAFKDPEKRK 210 (313)
T ss_pred eecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHHHhCCceeecC---CccccccccCCHHHHH
Confidence 9999999999999999999999999999877654433222 22233333333332111 111111111111111
Q ss_pred -----CCCCCCCCCCCCCC-CchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCC-ceeEEeCCCC
Q 038482 160 -----YGHPPDAIIALPGW-LSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLL-EEVTIMEGVG 227 (234)
Q Consensus 160 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~-~~~~~~~~ag 227 (234)
.-.+.. .++. ...+.++...+...+...++.| +|++|+.|.++ ++++.+.++.. +++.++||.=
T Consensus 211 ~~~~npl~y~g----~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~ 286 (313)
T KOG1455|consen 211 ILRSDPLCYTG----KPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMW 286 (313)
T ss_pred HhhcCCceecC----CccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHH
Confidence 111111 1111 1123333333333333449999 88999999997 56676666543 5999999999
Q ss_pred Ccccc
Q 038482 228 HFINQ 232 (234)
Q Consensus 228 H~~~~ 232 (234)
|.++.
T Consensus 287 H~Ll~ 291 (313)
T KOG1455|consen 287 HSLLS 291 (313)
T ss_pred HHhhc
Confidence 98764
No 46
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.91 E-value=7e-23 Score=159.65 Aligned_cols=212 Identities=12% Similarity=0.110 Sum_probs=125.4
Q ss_pred CCceEEEecCCCC----cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc-----CCC
Q 038482 8 QGPEILFLYGFPE----LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV-----APN 78 (234)
Q Consensus 8 ~~~~lv~ihG~~~----~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~-----~~~ 78 (234)
+++++|++||.+. +...|..+++.|.++||+|+++|+||||.|.... .+++++.+|+.++++.+ +.
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~----~~~~~~~~d~~~~~~~l~~~~~g~- 99 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN----LGFEGIDADIAAAIDAFREAAPHL- 99 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHhhCCCC-
Confidence 3568888888653 4455778899999989999999999999987532 46778888888888776 55
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccc-cccccCcchHHHHHHhhh
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYY-IGGIHEPGEIEAQFEQIS 157 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (234)
++++++||||||.+++.++.. +++|+++|++++................+........+ ...+..............
T Consensus 100 -~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 177 (274)
T TIGR03100 100 -RRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLG 177 (274)
T ss_pred -CcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHH
Confidence 789999999999999999765 56899999999865432211111110111111111111 101111111111111111
Q ss_pred hcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCccccc---------cccccCC--CCCceeEEeCC
Q 038482 158 KGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIHK---------GEFRSDV--PLLEEVTIMEG 225 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~~---------~~~~~~~--~~~~~~~~~~~ 225 (234)
.....+.... ...... .........+.. +++| ++++|++|.... ..+.+.+ ++. ++..+++
T Consensus 178 ~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~---~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~~~v-~~~~~~~ 250 (274)
T TIGR03100 178 DALLKARQKG-DEVAHG--GLAERMKAGLER---FQGPVLFILSGNDLTAQEFADSVLGEPAWRGALEDPGI-ERVEIDG 250 (274)
T ss_pred HHHHhhhhcC-CCcccc--hHHHHHHHHHHh---cCCcEEEEEcCcchhHHHHHHHhccChhhHHHhhcCCe-EEEecCC
Confidence 1100000000 001111 111222223323 7999 889999998751 3333434 777 9999999
Q ss_pred CCCccccC
Q 038482 226 VGHFINQE 233 (234)
Q Consensus 226 agH~~~~e 233 (234)
+||++..|
T Consensus 251 ~~H~l~~e 258 (274)
T TIGR03100 251 ADHTFSDR 258 (274)
T ss_pred CCcccccH
Confidence 99998554
No 47
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.90 E-value=1.2e-22 Score=162.19 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=85.4
Q ss_pred CceEEEecCCCCcch-hh-------------------------HHHHHHHHhcCCeEEeecCCCCCCCCcccc--ccccc
Q 038482 9 GPEILFLYGFPELRY-SR-------------------------CHQTIALASLSYRAVAPDLRGFGDTDELLE--MTSYT 60 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~-~~-------------------------~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~--~~~~~ 60 (234)
+.+|+++||++++.. .| ..+++.|.++||+|+++|+||||.|+.... ....+
T Consensus 21 kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~~~~~~g~~~~ 100 (332)
T TIGR01607 21 IGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDGLQNLRGHINC 100 (332)
T ss_pred eEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCccccccccchhh
Confidence 459999999999885 21 468999999999999999999999986531 12258
Q ss_pred HHHHHHHHHHHHHhcCC---------------------C-CCcEEEEEeChHHHHHHHHHHhccc--------cccceee
Q 038482 61 CFHVIGDLIGLIDLVAP---------------------N-DEKVFVVGHDSGTYMACFLCSFRAN--------RIKALVN 110 (234)
Q Consensus 61 ~~~~a~dl~~~~~~~~~---------------------~-~~~~~l~GhS~Gg~ia~~~a~~~p~--------~v~~lvl 110 (234)
++++++|+.++++.... . +.+++|+||||||.+++.++.++++ .++++|+
T Consensus 101 ~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~ 180 (332)
T TIGR01607 101 FDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGCIS 180 (332)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccccceEEE
Confidence 99999999999976421 0 2589999999999999999876542 5888988
Q ss_pred eccCCC
Q 038482 111 LSVVFN 116 (234)
Q Consensus 111 ~~~~~~ 116 (234)
+++...
T Consensus 181 ~s~~~~ 186 (332)
T TIGR01607 181 LSGMIS 186 (332)
T ss_pred eccceE
Confidence 887653
No 48
>PRK10985 putative hydrolase; Provisional
Probab=99.90 E-value=1e-22 Score=162.41 Aligned_cols=107 Identities=18% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCceEEEecCCCCcchh--hHHHHHHHHhcCCeEEeecCCCCCCCCcccccccc---cHHHHHHHHHHHHHhcCCCCCcE
Q 038482 8 QGPEILFLYGFPELRYS--RCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSY---TCFHVIGDLIGLIDLVAPNDEKV 82 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~--~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~---~~~~~a~dl~~~~~~~~~~~~~~ 82 (234)
++|+||++||++++... +..+++.|.++||+|+++|+||||.+..... ..+ ..+|....+..+.+.++. .++
T Consensus 57 ~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~--~~~ 133 (324)
T PRK10985 57 HKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH-RIYHSGETEDARFFLRWLQREFGH--VPT 133 (324)
T ss_pred CCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc-ceECCCchHHHHHHHHHHHHhCCC--CCE
Confidence 35899999999876443 4678899999999999999999997754321 122 223333333333344566 789
Q ss_pred EEEEeChHHHHHHHHHHhcccc--ccceeeeccCCCC
Q 038482 83 FVVGHDSGTYMACFLCSFRANR--IKALVNLSVVFNP 117 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p~~--v~~lvl~~~~~~~ 117 (234)
+++||||||.+++.++.++++. +.++|+++++...
T Consensus 134 ~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~ 170 (324)
T PRK10985 134 AAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLML 170 (324)
T ss_pred EEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCH
Confidence 9999999999988888876543 8899999986643
No 49
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.89 E-value=1.8e-22 Score=167.78 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=141.4
Q ss_pred CCceEEEecCCCCcchhhH-----HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcE
Q 038482 8 QGPEILFLYGFPELRYSRC-----HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKV 82 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~-----~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~ 82 (234)
.++|||++||+.....+|+ .+++.|.++||+|+++|++|+|.|.+....++|..+.+.+++..+.+..+. +++
T Consensus 187 ~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~--~kv 264 (532)
T TIGR01838 187 HKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGE--KQV 264 (532)
T ss_pred CCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCC--CCe
Confidence 3689999999999988886 799999999999999999999998776544567767778888888888899 999
Q ss_pred EEEEeChHHHHH---H-HHHHhc-cccccceeeeccCCCCCCCCCchhH-----HHHhhhhcCcccccc------cccC-
Q 038482 83 FVVGHDSGTYMA---C-FLCSFR-ANRIKALVNLSVVFNPNTSVSNSNW-----IKALGAYYGDDYYIG------GIHE- 145 (234)
Q Consensus 83 ~l~GhS~Gg~ia---~-~~a~~~-p~~v~~lvl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~- 145 (234)
+++||||||.++ + .+++++ |++|+++++++++...+.......+ .+.+........+.. .|..
T Consensus 265 ~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~l 344 (532)
T TIGR01838 265 NCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLL 344 (532)
T ss_pred EEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhc
Confidence 999999999985 2 245555 8899999999988766332211111 112222111111000 0000
Q ss_pred -c-c-hHHHHHHhhhhcCCCCCC----CCCCCCCCCchhHHHHHH-hhhcccCC----------------cccc-eEeec
Q 038482 146 -P-G-EIEAQFEQISKGYGHPPD----AIIALPGWLSDEDIKYFT-TKFDKNAL----------------LKES-TITKG 200 (234)
Q Consensus 146 -~-~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------i~~P-lli~G 200 (234)
+ . .....+..+........- |. .....+.......+. ..+.++.. |++| ++|+|
T Consensus 345 rp~~l~w~~~v~~yl~g~~~~~fdll~Wn-~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G 423 (532)
T TIGR01838 345 RENDLIWNYYVDNYLKGKSPVPFDLLFWN-SDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIAT 423 (532)
T ss_pred ChhhHHHHHHHHHHhcCCCccchhHHHHh-ccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEee
Confidence 0 0 011111111100000000 00 011122333344443 22322222 8999 88999
Q ss_pred CCcccc----ccccccCCCCCceeEEeCCCCCccccCC
Q 038482 201 VKEYIH----KGEFRSDVPLLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 201 ~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~~e~ 234 (234)
++|.++ .+.+.+.+++. +..+++++||.+++|+
T Consensus 424 ~~D~IvP~~sa~~l~~~i~~~-~~~vL~~sGHi~~ien 460 (532)
T TIGR01838 424 REDHIAPWQSAYRGAALLGGP-KTFVLGESGHIAGVVN 460 (532)
T ss_pred CCCCcCCHHHHHHHHHHCCCC-EEEEECCCCCchHhhC
Confidence 999997 45677788988 8889999999999875
No 50
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.89 E-value=6.3e-22 Score=160.22 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=91.5
Q ss_pred CcccccCC-----CceEEEecCCCCcchh-------------hHHHHH---HHHhcCCeEEeecCCCCCCCCcc------
Q 038482 1 MHVAEKGQ-----GPEILFLYGFPELRYS-------------RCHQTI---ALASLSYRAVAPDLRGFGDTDEL------ 53 (234)
Q Consensus 1 l~~~~~g~-----~~~lv~ihG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~D~~G~G~S~~~------ 53 (234)
|+|+..|. .++||+.|++.+++.. |+.++- .|....|.||++|..|-|.|+.|
T Consensus 43 ~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tg 122 (389)
T PRK06765 43 MGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTG 122 (389)
T ss_pred EEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCC
Confidence 46788773 4799999999986532 666642 34433499999999998764322
Q ss_pred ------c-------ccccccHHHHHHHHHHHHHhcCCCCCcEE-EEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 54 ------L-------EMTSYTCFHVIGDLIGLIDLVAPNDEKVF-VVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 54 ------~-------~~~~~~~~~~a~dl~~~~~~~~~~~~~~~-l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
. +...++++++++++.++++++++ +++. ++||||||++++.+|.++|++|+++|++++....
T Consensus 123 p~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~ 198 (389)
T PRK06765 123 PASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQN 198 (389)
T ss_pred CCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCC
Confidence 1 01237999999999999999999 9986 9999999999999999999999999999887654
No 51
>PRK13604 luxD acyl transferase; Provisional
Probab=99.88 E-value=3e-21 Score=149.15 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=81.5
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCC-CCCCcccccccccHHHHHHHHHHHHHhc---CCCCCcEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGF-GDTDELLEMTSYTCFHVIGDLIGLIDLV---APNDEKVFV 84 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-G~S~~~~~~~~~~~~~~a~dl~~~~~~~---~~~~~~~~l 84 (234)
.++||+.||++++...+..+++.|.++||.|+++|.||+ |.|++.. ...+.....+|+.++++.+ +. .++.|
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~--~~~t~s~g~~Dl~aaid~lk~~~~--~~I~L 112 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTI--DEFTMSIGKNSLLTVVDWLNTRGI--NNLGL 112 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcc--ccCcccccHHHHHHHHHHHHhcCC--CceEE
Confidence 478999999999887899999999999999999999987 9997755 3445555577876666544 45 78999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+||||||.+++..|... +++++|+.+|...
T Consensus 113 iG~SmGgava~~~A~~~--~v~~lI~~sp~~~ 142 (307)
T PRK13604 113 IAASLSARIAYEVINEI--DLSFLITAVGVVN 142 (307)
T ss_pred EEECHHHHHHHHHhcCC--CCCEEEEcCCccc
Confidence 99999999997776543 3888888877654
No 52
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=142.37 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=139.7
Q ss_pred CcccccCCCc-eEEEecCCCC-cchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccc-cccHHHHHHHHHHHHHhcC
Q 038482 1 MHVAEKGQGP-EILFLYGFPE-LRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMT-SYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 1 l~~~~~g~~~-~lv~ihG~~~-~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~-~~~~~~~a~dl~~~~~~~~ 76 (234)
|+|...|.|| .|++++|..+ ...+|.+++..|.+. .++|+++|.||||.|.+|.+.. ..-+..-+++..++++++.
T Consensus 33 l~y~~~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aLk 112 (277)
T KOG2984|consen 33 LGYCKYGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEALK 112 (277)
T ss_pred eeeeecCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHhC
Confidence 5688888876 8899999865 557899998888764 3899999999999999988322 2234566788888999999
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCccccccccc-------CcchH
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIH-------EPGEI 149 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 149 (234)
. +++.++|+|=||..++..|+++++.|.++|+.++........ ...++.......+....+ .++..
T Consensus 113 ~--~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~-----~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f 185 (277)
T KOG2984|consen 113 L--EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLG-----AMAFKGIRDVNKWSARGRQPYEDHYGPETF 185 (277)
T ss_pred C--CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchh-----HHHHhchHHHhhhhhhhcchHHHhcCHHHH
Confidence 9 999999999999999999999999999999999877652211 111111111111111111 11222
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCccccc----cccccCCCCCceeEEeC
Q 038482 150 EAQFEQISKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIHK----GEFRSDVPLLEEVTIME 224 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~~----~~~~~~~~~~~~~~~~~ 224 (234)
...+..+......+.. +.+..+ -.....+ ++|| +|++|+.|+.+. .-+....+.+ ++++.|
T Consensus 186 ~~~wa~wvD~v~qf~~--------~~dG~f--Cr~~lp~---vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a-~~~~~p 251 (277)
T KOG2984|consen 186 RTQWAAWVDVVDQFHS--------FCDGRF--CRLVLPQ---VKCPTLIMHGGKDPFCGDPHVCFIPVLKSLA-KVEIHP 251 (277)
T ss_pred HHHHHHHHHHHHHHhh--------cCCCch--Hhhhccc---ccCCeeEeeCCcCCCCCCCCccchhhhcccc-eEEEcc
Confidence 2222222211110000 000001 0011111 9999 889999999983 3455666788 999999
Q ss_pred CCCCcccc
Q 038482 225 GVGHFINQ 232 (234)
Q Consensus 225 ~agH~~~~ 232 (234)
..+|..++
T Consensus 252 eGkHn~hL 259 (277)
T KOG2984|consen 252 EGKHNFHL 259 (277)
T ss_pred CCCcceee
Confidence 99999876
No 53
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.88 E-value=4.9e-21 Score=156.74 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=82.4
Q ss_pred CceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc---CCCCCcEEE
Q 038482 9 GPEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV---APNDEKVFV 84 (234)
Q Consensus 9 ~~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~---~~~~~~~~l 84 (234)
.|+||+.||+.+.. ..|..+++.|.++||+|+++|+||+|.|.... ...+.....+++.+.+... +. +++.+
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~--~~~d~~~~~~avld~l~~~~~vd~--~ri~l 269 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWK--LTQDSSLLHQAVLNALPNVPWVDH--TRVAA 269 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC--ccccHHHHHHHHHHHHHhCcccCc--ccEEE
Confidence 46777777766653 57888899999999999999999999997643 2234444556666666554 45 79999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+||||||++++.+|..+|++++++|++++...
T Consensus 270 ~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 270 FGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99999999999999999999999999987653
No 54
>PRK11071 esterase YqiA; Provisional
Probab=99.87 E-value=3e-21 Score=142.10 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=110.1
Q ss_pred ceEEEecCCCCcchhhHH--HHHHHHhc--CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 10 PEILFLYGFPELRYSRCH--QTIALASL--SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~--~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
|+||++||++++...|.. +.+.|.+. +|+|+++|+||++ ++.++++.+++++++. ++++++
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------~~~~~~l~~l~~~~~~--~~~~lv 66 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------ADAAELLESLVLEHGG--DPLGLV 66 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------HHHHHHHHHHHHHcCC--CCeEEE
Confidence 689999999999999984 34666542 6999999999984 3588899999999999 899999
Q ss_pred EeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCCCC
Q 038482 86 GHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPPD 165 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (234)
||||||++++.+|.++|. ++|+++++..+ .+..+....... ....
T Consensus 67 G~S~Gg~~a~~~a~~~~~---~~vl~~~~~~~---------~~~~~~~~~~~~-~~~~---------------------- 111 (190)
T PRK11071 67 GSSLGGYYATWLSQCFML---PAVVVNPAVRP---------FELLTDYLGENE-NPYT---------------------- 111 (190)
T ss_pred EECHHHHHHHHHHHHcCC---CEEEECCCCCH---------HHHHHHhcCCcc-cccC----------------------
Confidence 999999999999999983 46888876542 222222211110 0000
Q ss_pred CCCCCCCCCchhHHHHHHhhhcccCCcccc---eEeecCCcccc-ccccccCCCCCceeEEeCCCCCcc
Q 038482 166 AIIALPGWLSDEDIKYFTTKFDKNALLKES---TITKGVKEYIH-KGEFRSDVPLLEEVTIMEGVGHFI 230 (234)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P---lli~G~~D~~~-~~~~~~~~~~~~~~~~~~~agH~~ 230 (234)
.....++.+-+...... .- ..++.| ++|+|++|.++ .+...+...++ ++.+++|++|..
T Consensus 112 ---~~~~~~~~~~~~d~~~~-~~-~~i~~~~~v~iihg~~De~V~~~~a~~~~~~~-~~~~~~ggdH~f 174 (190)
T PRK11071 112 ---GQQYVLESRHIYDLKVM-QI-DPLESPDLIWLLQQTGDEVLDYRQAVAYYAAC-RQTVEEGGNHAF 174 (190)
T ss_pred ---CCcEEEcHHHHHHHHhc-CC-ccCCChhhEEEEEeCCCCcCCHHHHHHHHHhc-ceEEECCCCcch
Confidence 00011222222222211 11 114444 67999999998 33444444466 888999999975
No 55
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.86 E-value=4.3e-21 Score=142.64 Aligned_cols=104 Identities=26% Similarity=0.292 Sum_probs=89.7
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC-CCCCcEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA-PNDEKVFVV 85 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~-~~~~~~~l~ 85 (234)
++|.+++.||.+.++-.|..++.+|... ..+|+++|+||||.|...+. ++.+.+.+++|+.++++.+- -.+.+++||
T Consensus 73 ~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e-~dlS~eT~~KD~~~~i~~~fge~~~~iilV 151 (343)
T KOG2564|consen 73 EGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENE-DDLSLETMSKDFGAVIKELFGELPPQIILV 151 (343)
T ss_pred CccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCCh-hhcCHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 5899999999999999999999999864 47889999999999987774 67999999999999998863 223789999
Q ss_pred EeChHHHHHHHHHHh--ccccccceeeecc
Q 038482 86 GHDSGTYMACFLCSF--RANRIKALVNLSV 113 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~ 113 (234)
||||||+|+...|.. -|. +.++++++.
T Consensus 152 GHSmGGaIav~~a~~k~lps-l~Gl~viDV 180 (343)
T KOG2564|consen 152 GHSMGGAIAVHTAASKTLPS-LAGLVVIDV 180 (343)
T ss_pred eccccchhhhhhhhhhhchh-hhceEEEEE
Confidence 999999999888764 466 889999985
No 56
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.85 E-value=2.2e-20 Score=143.37 Aligned_cols=105 Identities=20% Similarity=0.114 Sum_probs=88.6
Q ss_pred CceEEEecCCCCc----chhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHH---HhcCCCCCc
Q 038482 9 GPEILFLYGFPEL----RYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLI---DLVAPNDEK 81 (234)
Q Consensus 9 ~~~lv~ihG~~~~----~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~---~~~~~~~~~ 81 (234)
.++|||+||++++ ...|..+++.|.++||+|+++|+||||.|.... ...+++.+++|+.+++ ++.+. ++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~--~~~~~~~~~~Dv~~ai~~L~~~~~--~~ 100 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF--AAARWDVWKEDVAAAYRWLIEQGH--PP 100 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc--ccCCHHHHHHHHHHHHHHHHhcCC--CC
Confidence 4689999999864 356788899999889999999999999998755 3467888888877755 44466 89
Q ss_pred EEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 82 VFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 82 ~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
++|+||||||.+++.++.++|++++++|+++|....
T Consensus 101 v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g 136 (266)
T TIGR03101 101 VTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSG 136 (266)
T ss_pred EEEEEECHHHHHHHHHHHhCccccceEEEeccccch
Confidence 999999999999999999999999999999976543
No 57
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.84 E-value=6.2e-22 Score=150.12 Aligned_cols=76 Identities=29% Similarity=0.403 Sum_probs=70.5
Q ss_pred CeEEeecCCCCCCCCc--ccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccC
Q 038482 37 YRAVAPDLRGFGDTDE--LLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 37 ~~v~~~D~~G~G~S~~--~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
|+|+++|+||+|.|++ ......++.+++++++..+++.++. ++++++||||||.+++.+|+++|++|+++|+++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 6899999999999995 1334789999999999999999999 89999999999999999999999999999999986
No 58
>PRK10566 esterase; Provisional
Probab=99.84 E-value=8.2e-20 Score=140.64 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=73.6
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccH-------HHHHHHHHHHHHhc---C-C
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-------FHVIGDLIGLIDLV---A-P 77 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~-------~~~a~dl~~~~~~~---~-~ 77 (234)
.|+||++||++++...|..+++.|.++||+|+++|+||||.+.... ...++ .+..+|+.++++.+ + +
T Consensus 27 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGD--EARRLNHFWQILLQNMQEFPTLRAAIREEGWL 104 (249)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCc--cccchhhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5799999999999999999999999989999999999999864322 11111 12233343333322 1 2
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccccccceeeec
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLS 112 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 112 (234)
..+++.++||||||.+++.++.++|+....+++++
T Consensus 105 ~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~ 139 (249)
T PRK10566 105 LDDRLAVGGASMGGMTALGIMARHPWVKCVASLMG 139 (249)
T ss_pred CccceeEEeecccHHHHHHHHHhCCCeeEEEEeeC
Confidence 22789999999999999999998887444444444
No 59
>PLN02872 triacylglycerol lipase
Probab=99.83 E-value=3.9e-20 Score=149.83 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=85.0
Q ss_pred CceEEEecCCCCcchhhH------HHHHHHHhcCCeEEeecCCCCCCCCccc-------ccccccHHHHH-HHHHHHHHh
Q 038482 9 GPEILFLYGFPELRYSRC------HQTIALASLSYRAVAPDLRGFGDTDELL-------EMTSYTCFHVI-GDLIGLIDL 74 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~------~~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~a-~dl~~~~~~ 74 (234)
+|+|+|+||++.++..|. .++..|+++||+|+++|+||++.|.+.. ....+++++++ .|+.++++.
T Consensus 74 ~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~ 153 (395)
T PLN02872 74 GPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHY 153 (395)
T ss_pred CCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHH
Confidence 689999999999999884 3555688889999999999988764311 11257899999 799999998
Q ss_pred cC-CCCCcEEEEEeChHHHHHHHHHHhccc---cccceeeeccCCCC
Q 038482 75 VA-PNDEKVFVVGHDSGTYMACFLCSFRAN---RIKALVNLSVVFNP 117 (234)
Q Consensus 75 ~~-~~~~~~~l~GhS~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~ 117 (234)
+. .++++++++||||||.+++.++ .+|+ +|+.+++++|....
T Consensus 154 i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~ 199 (395)
T PLN02872 154 VYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYL 199 (395)
T ss_pred HHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhh
Confidence 62 1127999999999999998554 5776 68889999887654
No 60
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.83 E-value=5.2e-20 Score=165.86 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=85.7
Q ss_pred CCceEEEecCCCCcchhhHHH-----HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh---cCCCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQ-----TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL---VAPND 79 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~-----~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~---~~~~~ 79 (234)
.++||||+||++.+...|+.+ ++.|.++||+|+++| +|.++++......++.+++..+.+.++. +..
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d---~G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~-- 140 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVID---FGSPDKVEGGMERNLADHVVALSEAIDTVKDVTG-- 140 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEc---CCCCChhHcCccCCHHHHHHHHHHHHHHHHHhhC--
Confidence 468999999999999999875 889988899999999 4777665432346777777777777665 455
Q ss_pred CcEEEEEeChHHHHHHHHHHhc-cccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR-ANRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~-p~~v~~lvl~~~~~~~ 117 (234)
++++++||||||.+++.+++.+ +++|+++|+++++...
T Consensus 141 ~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 141 RDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred CceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 7899999999999999998754 5689999999987654
No 61
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.82 E-value=1.1e-19 Score=146.52 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=83.0
Q ss_pred CceEEEecCCCCcchhh-----HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHH-----HHHHHHhcCCC
Q 038482 9 GPEILFLYGFPELRYSR-----CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD-----LIGLIDLVAPN 78 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~d-----l~~~~~~~~~~ 78 (234)
++|||++||+..+...+ ..+++.|.++||+|+++|++|+|.|+... ++++++.+ +..+.+..+.
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~-----~~~d~~~~~~~~~v~~l~~~~~~- 135 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYL-----TLDDYINGYIDKCVDYICRTSKL- 135 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC-----CHHHHHHHHHHHHHHHHHHHhCC-
Confidence 46899999987666554 58999999999999999999999875433 55555433 3444455677
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
++++++||||||++++.+++.+|++|+++|+++++...
T Consensus 136 -~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 136 -DQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred -CcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 89999999999999999999999999999999987764
No 62
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=133.66 Aligned_cols=102 Identities=34% Similarity=0.520 Sum_probs=86.4
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhc--CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASL--SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
+|+++++||++++...|......+... .|+++.+|+||||.|. . ..++...+++++..+++.++. .+++++|
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~--~--~~~~~~~~~~~~~~~~~~~~~--~~~~l~G 94 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD--P--AGYSLSAYADDLAALLDALGL--EKVVLVG 94 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC--c--ccccHHHHHHHHHHHHHHhCC--CceEEEE
Confidence 569999999999999998844444432 1899999999999997 1 134555559999999999999 8899999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
|||||.+++.++.++|++++++|++++...
T Consensus 95 ~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 95 HSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred ecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 999999999999999999999999997654
No 63
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.81 E-value=4.8e-19 Score=125.05 Aligned_cols=93 Identities=30% Similarity=0.407 Sum_probs=76.3
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChH
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSG 90 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~G 90 (234)
+||++||++++...|..+++.|.++||.|+.+|+|++|.+.... ..+++.+++. -+.... .++.++|||+|
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~--~~i~l~G~S~G 71 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGAD-----AVERVLADIR--AGYPDP--DRIILIGHSMG 71 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSH-----HHHHHHHHHH--HHHCTC--CEEEEEEETHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhH-----HHHHHHHHHH--hhcCCC--CcEEEEEEccC
Confidence 68999999999999999999999999999999999999883322 3333333332 112355 89999999999
Q ss_pred HHHHHHHHHhccccccceeeecc
Q 038482 91 TYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 91 g~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
|.+++.++.+. .+++++|++++
T Consensus 72 g~~a~~~~~~~-~~v~~~v~~~~ 93 (145)
T PF12695_consen 72 GAIAANLAARN-PRVKAVVLLSP 93 (145)
T ss_dssp HHHHHHHHHHS-TTESEEEEESE
T ss_pred cHHHHHHhhhc-cceeEEEEecC
Confidence 99999999988 78999999997
No 64
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=1.2e-18 Score=128.25 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=128.1
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-cCCCCCcEEEE
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-VAPNDEKVFVV 85 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~~~~~~~~~l~ 85 (234)
+..+.++|+|-.|+++..|+.+.+.|... +.++++++||+|..-... ...+++.+|+.+...+.. ... +++.++
T Consensus 5 ~~~~~L~cfP~AGGsa~~fr~W~~~lp~~-iel~avqlPGR~~r~~ep--~~~di~~Lad~la~el~~~~~d--~P~alf 79 (244)
T COG3208 5 GARLRLFCFPHAGGSASLFRSWSRRLPAD-IELLAVQLPGRGDRFGEP--LLTDIESLADELANELLPPLLD--APFALF 79 (244)
T ss_pred CCCceEEEecCCCCCHHHHHHHHhhCCch-hheeeecCCCcccccCCc--ccccHHHHHHHHHHHhccccCC--CCeeec
Confidence 45679999999999999999999999885 999999999999876555 567999999999988884 444 799999
Q ss_pred EeChHHHHHHHHHHhccc---cccceeeeccCCCCCCC------CCchhHHHHhhhhcCcccccccccCcchHHHHHHhh
Q 038482 86 GHDSGTYMACFLCSFRAN---RIKALVNLSVVFNPNTS------VSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQI 156 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
||||||++|.++|.+... ...++.+.+........ ......++.++.+-+.. ...+..++.....+-..
T Consensus 80 GHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p--~e~led~El~~l~LPil 157 (244)
T COG3208 80 GHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTP--PELLEDPELMALFLPIL 157 (244)
T ss_pred ccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCC--hHHhcCHHHHHHHHHHH
Confidence 999999999999986533 25556666554432111 11111222222221110 01111111111111000
Q ss_pred hhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccc
Q 038482 157 SKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFIN 231 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~ 231 (234)
. .+-...+.|.... ...++|| +++.|++|..+ ...|.+...+..++.+++| |||..
T Consensus 158 R----------------AD~~~~e~Y~~~~--~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdG-gHFfl 218 (244)
T COG3208 158 R----------------ADFRALESYRYPP--PAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDG-GHFFL 218 (244)
T ss_pred H----------------HHHHHhcccccCC--CCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecC-cceeh
Confidence 0 0000111111111 1228999 88999999998 3457777775459999987 99987
Q ss_pred cCC
Q 038482 232 QEK 234 (234)
Q Consensus 232 ~e~ 234 (234)
.++
T Consensus 219 ~~~ 221 (244)
T COG3208 219 NQQ 221 (244)
T ss_pred hhh
Confidence 653
No 65
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.76 E-value=5e-17 Score=116.79 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=132.9
Q ss_pred ccCCCceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcE
Q 038482 5 EKGQGPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKV 82 (234)
Q Consensus 5 ~~g~~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~ 82 (234)
++|+...+|++||+-++.. ....++.+|.+.|+.++.+|++|.|.|...- ..-+....|+|+..+++.+...+..+
T Consensus 29 ~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf--~~Gn~~~eadDL~sV~q~~s~~nr~v 106 (269)
T KOG4667|consen 29 ETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSF--YYGNYNTEADDLHSVIQYFSNSNRVV 106 (269)
T ss_pred ccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcc--ccCcccchHHHHHHHHHHhccCceEE
Confidence 4567789999999988654 4567788899999999999999999999877 44466677799999999986532333
Q ss_pred -EEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCC
Q 038482 83 -FVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYG 161 (234)
Q Consensus 83 -~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (234)
+++|||-||.+++.+|.++++ ++-+|.+++......... ..+. +..++...+.-. ..
T Consensus 107 ~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~---------eRlg----------~~~l~~ike~Gf--id 164 (269)
T KOG4667|consen 107 PVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN---------ERLG----------EDYLERIKEQGF--ID 164 (269)
T ss_pred EEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh---------hhhc----------ccHHHHHHhCCc--ee
Confidence 788999999999999999887 888888887665421110 0000 111111111100 00
Q ss_pred CCCCCCCCCCCCCchhHHHHHHhhhcccCC----cccceE-eecCCcccc----ccccccCCCCCceeEEeCCCCCcccc
Q 038482 162 HPPDAIIALPGWLSDEDIKYFTTKFDKNAL----LKESTI-TKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFINQ 232 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~Pll-i~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~~ 232 (234)
.-+... .....++++.+......--.... .+||++ ++|..|.++ ..++++.+|+- ++.++|||.|....
T Consensus 165 ~~~rkG-~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~nH-~L~iIEgADHnyt~ 242 (269)
T KOG4667|consen 165 VGPRKG-KYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNH-KLEIIEGADHNYTG 242 (269)
T ss_pred cCcccC-CcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccCC-ceEEecCCCcCccc
Confidence 000000 12223333333222221111111 567744 999999998 67889999998 99999999997643
No 66
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.74 E-value=3.2e-17 Score=133.14 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=83.4
Q ss_pred CCceEEEecCCCCcc--hhhHH-HHHHHHh--cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc------C
Q 038482 8 QGPEILFLYGFPELR--YSRCH-QTIALAS--LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV------A 76 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~--~~~~~-~~~~l~~--~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~------~ 76 (234)
++|++|+|||++.+. ..|.+ ++++|.. ..++|+++|++|+|.|..+. .......+++++.++++.+ +
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~--a~~~t~~vg~~la~lI~~L~~~~gl~ 117 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPT--SAAYTKLVGKDVAKFVNWMQEEFNYP 117 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCcc--ccccHHHHHHHHHHHHHHHHHhhCCC
Confidence 479999999998754 45765 5666542 24999999999999886554 2233467777777777754 3
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+ ++++|+||||||.+|..++.++|++|.++++++|...
T Consensus 118 l--~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP 155 (442)
T TIGR03230 118 W--DNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGP 155 (442)
T ss_pred C--CcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCC
Confidence 6 8999999999999999999999999999999998654
No 67
>PLN00021 chlorophyllase
Probab=99.74 E-value=4.3e-17 Score=128.45 Aligned_cols=105 Identities=26% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-------cCCCC
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-------VAPND 79 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-------~~~~~ 79 (234)
++.|+||++||++.+...|..+++.|+++||.|+++|++|++.+.... ...+..+..+.+.+.++. .+.
T Consensus 50 g~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~--~i~d~~~~~~~l~~~l~~~l~~~~~~d~-- 125 (313)
T PLN00021 50 GTYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTD--EIKDAAAVINWLSSGLAAVLPEGVRPDL-- 125 (313)
T ss_pred CCCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchh--hHHHHHHHHHHHHhhhhhhcccccccCh--
Confidence 456899999999999999999999999999999999999865432211 111222333333332222 234
Q ss_pred CcEEEEEeChHHHHHHHHHHhccc-----cccceeeeccCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRAN-----RIKALVNLSVVF 115 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~ 115 (234)
+++.++||||||.+++.+|.++++ +++++|.+++..
T Consensus 126 ~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 126 SKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVD 166 (313)
T ss_pred hheEEEEECcchHHHHHHHhhccccccccceeeEEeecccc
Confidence 689999999999999999998874 578888887643
No 68
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=118.47 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=113.0
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC---CCCcEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP---NDEKVFV 84 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~---~~~~~~l 84 (234)
.+++++.||...+......+...|..+ +++++.+|++|+|.|..... .. ...+|+.++.+.+.- ++++++|
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps--E~---n~y~Di~avye~Lr~~~g~~~~Iil 134 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS--ER---NLYADIKAVYEWLRNRYGSPERIIL 134 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcc--cc---cchhhHHHHHHHHHhhcCCCceEEE
Confidence 479999999977777666666667663 69999999999999998772 22 455555555554421 2389999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCCC
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPP 164 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (234)
+|+|+|...++.+|.+.| +.++|+.+|-... .+.......
T Consensus 135 ~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~------------~rv~~~~~~-------------------------- 174 (258)
T KOG1552|consen 135 YGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG------------MRVAFPDTK-------------------------- 174 (258)
T ss_pred EEecCCchhhhhHhhcCC--cceEEEeccchhh------------hhhhccCcc--------------------------
Confidence 999999999999999999 9999999874432 111100000
Q ss_pred CCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCcc
Q 038482 165 DAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFI 230 (234)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~ 230 (234)
...+++.-. . ..+...++|| ++++|++|.++ ...+-+.+++..+-..+.|+||.-
T Consensus 175 -----~~~~~d~f~---~---i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~ 234 (258)
T KOG1552|consen 175 -----TTYCFDAFP---N---IEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHND 234 (258)
T ss_pred -----eEEeecccc---c---cCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcc
Confidence 000000000 0 1111229999 88999999997 566777777755777788999963
No 69
>PRK11460 putative hydrolase; Provisional
Probab=99.70 E-value=7.3e-16 Score=117.20 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=70.7
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc---------cccc---cHHHHHHHHHHHH---
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE---------MTSY---TCFHVIGDLIGLI--- 72 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~---------~~~~---~~~~~a~dl~~~~--- 72 (234)
..|+|||+||++++...|.++++.|.+.++.+..++++|...+..... .... ++.+..+.+.+++
T Consensus 15 ~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 94 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYW 94 (232)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999987655555555555432211000 0011 1223333333333
Q ss_pred -HhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 73 -DLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 73 -~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
+..++.+++++|+|||+||.+++.++.++|+.+.+++.+++
T Consensus 95 ~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg 136 (232)
T PRK11460 95 QQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSG 136 (232)
T ss_pred HHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecc
Confidence 34454346899999999999999999999988777776654
No 70
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.69 E-value=1.9e-15 Score=117.94 Aligned_cols=109 Identities=20% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCceEEEecCCCCcchhhHHH--HHHHH-hcCCeEEeecC--CCCCCCCccc------------------ccccccHHH-
Q 038482 8 QGPEILFLYGFPELRYSRCHQ--TIALA-SLSYRAVAPDL--RGFGDTDELL------------------EMTSYTCFH- 63 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~--~~~l~-~~g~~v~~~D~--~G~G~S~~~~------------------~~~~~~~~~- 63 (234)
+.|+|+|+||++++...|... +..+. +.|+.|++||. +|+|.+.... ....+++.+
T Consensus 41 ~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~ 120 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSY 120 (275)
T ss_pred CCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHH
Confidence 468999999999999888543 34454 45899999998 5555432110 001233333
Q ss_pred HHHHHHHHHHh-cCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 64 VIGDLIGLIDL-VAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 64 ~a~dl~~~~~~-~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.++++..+++. +++..+++.++||||||++++.++.++|+++++++++++...
T Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 174 (275)
T TIGR02821 121 IVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVA 174 (275)
T ss_pred HHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccC
Confidence 46788888876 333227899999999999999999999999999999887654
No 71
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.69 E-value=1.3e-16 Score=124.03 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=80.5
Q ss_pred CCceEEEecCCCCcc-hhhHHH-HHHHH-hcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCC
Q 038482 8 QGPEILFLYGFPELR-YSRCHQ-TIALA-SLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~-~~~~~~-~~~l~-~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~ 80 (234)
++|++|+|||+.++. ..|... .+.+. +.+++|+++|+++++.+.-+. ...+...+++++.++++.+ +...+
T Consensus 35 ~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~--a~~~~~~v~~~la~~l~~L~~~~g~~~~ 112 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQ--AVNNTRVVGAELAKFLDFLVDNTGLSLE 112 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHH--HHHhHHHHHHHHHHHHHHHHHhcCCChH
Confidence 468999999999987 677554 44454 346999999999884332222 2345566666666666554 22127
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+++|+||||||.+|..++.++|++|.+++.++|....
T Consensus 113 ~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~ 149 (275)
T cd00707 113 NVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPL 149 (275)
T ss_pred HEEEEEecHHHHHHHHHHHHhcCccceeEEecCCccc
Confidence 8999999999999999999999999999999987644
No 72
>PLN02442 S-formylglutathione hydrolase
Probab=99.69 E-value=1.3e-15 Score=119.30 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=76.7
Q ss_pred CceEEEecCCCCcchhhHH---HHHHHHhcCCeEEeecCCCCCC-----CCc-------------ccc------cccccH
Q 038482 9 GPEILFLYGFPELRYSRCH---QTIALASLSYRAVAPDLRGFGD-----TDE-------------LLE------MTSYTC 61 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~---~~~~l~~~g~~v~~~D~~G~G~-----S~~-------------~~~------~~~~~~ 61 (234)
-|+|+|+||++++...|.. +.+.+...|+.|+++|..++|. +.. ... ...+-.
T Consensus 47 ~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (283)
T PLN02442 47 VPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVV 126 (283)
T ss_pred CCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHH
Confidence 5899999999998887744 3455666699999999877661 110 000 001123
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+++.+.+...++.++. ++++++||||||..++.++.++|+++++++.+++...
T Consensus 127 ~~l~~~i~~~~~~~~~--~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 127 KELPKLLSDNFDQLDT--SRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHHHHhcCC--CceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 4444555555555677 8999999999999999999999999999999887654
No 73
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.68 E-value=1.2e-15 Score=114.71 Aligned_cols=224 Identities=15% Similarity=0.103 Sum_probs=145.4
Q ss_pred cccccC----CCceEEEecCCCCcchh-hHHH-----HHHHHhcCCeEEeecCCCCCCCCccc--ccccccHHHHHHHHH
Q 038482 2 HVAEKG----QGPEILFLYGFPELRYS-RCHQ-----TIALASLSYRAVAPDLRGFGDTDELL--EMTSYTCFHVIGDLI 69 (234)
Q Consensus 2 ~~~~~g----~~~~lv~ihG~~~~~~~-~~~~-----~~~l~~~g~~v~~~D~~G~G~S~~~~--~~~~~~~~~~a~dl~ 69 (234)
++...| ++|+++=.|.++.+... |..+ +..+.++ +.++-+|.||+-.-...- +-...|++++|++|.
T Consensus 35 ~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~yPsmd~LAd~l~ 113 (326)
T KOG2931|consen 35 HVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYPYPSMDDLADMLP 113 (326)
T ss_pred EEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCCCCCHHHHHHHHH
Confidence 344455 36888889999987654 6544 6778887 999999999987654433 212459999999999
Q ss_pred HHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchH
Q 038482 70 GLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEI 149 (234)
Q Consensus 70 ~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
.+++++++ +.++-+|.--|++|...+|..||+||.+|||+++.... ..|.+.....+...+.....-.....
T Consensus 114 ~VL~~f~l--k~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a------~gwiew~~~K~~s~~l~~~Gmt~~~~ 185 (326)
T KOG2931|consen 114 EVLDHFGL--KSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCA------KGWIEWAYNKVSSNLLYYYGMTQGVK 185 (326)
T ss_pred HHHHhcCc--ceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCC------chHHHHHHHHHHHHHHHhhchhhhHH
Confidence 99999999 99999999999999999999999999999999975533 12344433332221111111122222
Q ss_pred HHHHHhhhhcCC------CCCCCCCCCCCCCchhHHHHHHhhhcccCC-----------cccc-eEeecCCcccc--ccc
Q 038482 150 EAQFEQISKGYG------HPPDAIIALPGWLSDEDIKYFTTKFDKNAL-----------LKES-TITKGVKEYIH--KGE 209 (234)
Q Consensus 150 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~P-lli~G~~D~~~--~~~ 209 (234)
+.++.+...... ..+.............++..|..++.+... ++|| +++.|++.+.+ ..+
T Consensus 186 d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~~vv~ 265 (326)
T KOG2931|consen 186 DYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHVSAVVE 265 (326)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchhhhhhh
Confidence 222222221100 000001122333444566677777665433 6799 88999999886 223
Q ss_pred cccCC-CCCceeEEeCCCCCccccCC
Q 038482 210 FRSDV-PLLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 210 ~~~~~-~~~~~~~~~~~agH~~~~e~ 234 (234)
+...+ |.-+.+..+.+||=.++.||
T Consensus 266 ~n~~Ldp~~ttllk~~d~g~l~~e~q 291 (326)
T KOG2931|consen 266 CNSKLDPTYTTLLKMADCGGLVQEEQ 291 (326)
T ss_pred hhcccCcccceEEEEcccCCcccccC
Confidence 33332 32238888999998888764
No 74
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.67 E-value=2.3e-16 Score=119.92 Aligned_cols=217 Identities=11% Similarity=0.029 Sum_probs=123.1
Q ss_pred CceEEEecCCCCcchh-hHHH-----HHHHHhcCCeEEeecCCCCCCCCcccc--cccccHHHHHHHHHHHHHhcCCCCC
Q 038482 9 GPEILFLYGFPELRYS-RCHQ-----TIALASLSYRAVAPDLRGFGDTDELLE--MTSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-~~~~-----~~~l~~~g~~v~~~D~~G~G~S~~~~~--~~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
+|++|-.|-.|.+... |..+ ++.+.++ +.++-+|.||+..-..+.. -...|++++|+++.++++++++ +
T Consensus 23 kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f~l--k 99 (283)
T PF03096_consen 23 KPAILTYHDVGLNHKSCFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHFGL--K 99 (283)
T ss_dssp S-EEEEE--TT--HHHHCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT-----HHHHHCTHHHHHHHHT----
T ss_pred CceEEEeccccccchHHHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCcccccccccccCHHHHHHHHHHHHHhCCc--c
Confidence 7899999999987765 7665 5667775 9999999999987555442 1245999999999999999999 9
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGY 160 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
.++-+|-..|++|...+|..+|++|.++||+++.... ..|.+.+...+.........-.+...+.++.+.....
T Consensus 100 ~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~------~gw~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~ 173 (283)
T PF03096_consen 100 SVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA------AGWMEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKE 173 (283)
T ss_dssp -EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---------HHHHHHHHHH-------CTTS-HHHHHHHHHS-HH
T ss_pred EEEEEeeccchhhhhhccccCccceeEEEEEecCCCC------ccHHHHHHHHHhcccccccccccchHHhhhhcccccc
Confidence 9999999999999999999999999999999976543 1244554444332222122222223332222221110
Q ss_pred ------CCCCCCCCCCCCCCchhHHHHHHhhhcccCC-------cccc-eEeecCCcccc--ccccc-cCCCCCceeEEe
Q 038482 161 ------GHPPDAIIALPGWLSDEDIKYFTTKFDKNAL-------LKES-TITKGVKEYIH--KGEFR-SDVPLLEEVTIM 223 (234)
Q Consensus 161 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~P-lli~G~~D~~~--~~~~~-~~~~~~~~~~~~ 223 (234)
+..+.........+...++..|.+.+..... ..|| +++.|++.+.. ..++. +.-|..+++..+
T Consensus 174 ~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~~~vv~~ns~Ldp~~ttllkv 253 (283)
T PF03096_consen 174 EEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHVDDVVEMNSKLDPTKTTLLKV 253 (283)
T ss_dssp HHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTHHHHHHHHHHS-CCCEEEEEE
T ss_pred cccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcchhhHHHHHhhcCcccceEEEe
Confidence 0000000012233555677777777755433 6788 88999999886 22333 334544599999
Q ss_pred CCCCCccccCC
Q 038482 224 EGVGHFINQEK 234 (234)
Q Consensus 224 ~~agH~~~~e~ 234 (234)
++||=.++.||
T Consensus 254 ~dcGglV~eEq 264 (283)
T PF03096_consen 254 ADCGGLVLEEQ 264 (283)
T ss_dssp TT-TT-HHHH-
T ss_pred cccCCcccccC
Confidence 99998887765
No 75
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.65 E-value=4.2e-15 Score=111.88 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=98.8
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChH
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSG 90 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~G 90 (234)
+||=+||.+||..+|..+...|.+.|+|+|.+++||+|.++++.+ ..|+-.+...-..++++.++++ ++++.+|||.|
T Consensus 37 TVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~-~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrG 114 (297)
T PF06342_consen 37 TVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPD-QQYTNEERQNFVNALLDELGIK-GKLIFLGHSRG 114 (297)
T ss_pred eEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcc-cccChHHHHHHHHHHHHHcCCC-CceEEEEeccc
Confidence 899999999999999999999999999999999999999999885 7889999999999999999995 78899999999
Q ss_pred HHHHHHHHHhccccccceeeeccCCCC-CCCCCc
Q 038482 91 TYMACFLCSFRANRIKALVNLSVVFNP-NTSVSN 123 (234)
Q Consensus 91 g~ia~~~a~~~p~~v~~lvl~~~~~~~-~~~~~~ 123 (234)
+-.|+.++..+| +.++++++|+..- +...+|
T Consensus 115 cenal~la~~~~--~~g~~lin~~G~r~HkgIrp 146 (297)
T PF06342_consen 115 CENALQLAVTHP--LHGLVLINPPGLRPHKGIRP 146 (297)
T ss_pred hHHHHHHHhcCc--cceEEEecCCccccccCcCH
Confidence 999999999986 6799999987765 444444
No 76
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.63 E-value=4.5e-16 Score=112.07 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=119.4
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHh-cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC----CCCCc
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALAS-LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA----PNDEK 81 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~----~~~~~ 81 (234)
.+.|+++.+|+..++-...-+++.-+-. .+.+|+.+++||||.|...+ |-+.+.-|..++++.+- ..+.+
T Consensus 76 ~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~Gsp-----sE~GL~lDs~avldyl~t~~~~dktk 150 (300)
T KOG4391|consen 76 SSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSP-----SEEGLKLDSEAVLDYLMTRPDLDKTK 150 (300)
T ss_pred CCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCc-----cccceeccHHHHHHHHhcCccCCcce
Confidence 3679999999999998888888877654 37899999999999998877 33344445555555542 22478
Q ss_pred EEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCC
Q 038482 82 VFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYG 161 (234)
Q Consensus 82 ~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (234)
++|+|-|+||++|+.+|+++.+++.++++-++-...+....+ -. ..+ .-+.+..+.
T Consensus 151 ivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~--------~v-------~p~-----~~k~i~~lc---- 206 (300)
T KOG4391|consen 151 IVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIP--------LV-------FPF-----PMKYIPLLC---- 206 (300)
T ss_pred EEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhh--------ee-------ccc-----hhhHHHHHH----
Confidence 999999999999999999999999999998864432111000 00 000 001111111
Q ss_pred CCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCC-ceeEEeCCCCCc
Q 038482 162 HPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLL-EEVTIMEGVGHF 229 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~-~~~~~~~~agH~ 229 (234)
....|.+...+. + .+.| ++|.|.+|.++ .+.+.+.+|.. +++..+|++.|.
T Consensus 207 -------~kn~~~S~~ki~-------~---~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHN 263 (300)
T KOG4391|consen 207 -------YKNKWLSYRKIG-------Q---CRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHN 263 (300)
T ss_pred -------HHhhhcchhhhc-------c---ccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccC
Confidence 001222222211 1 6889 88999999998 45566666654 589999999985
No 77
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.62 E-value=8.2e-15 Score=116.35 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=77.0
Q ss_pred CCCceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCC
Q 038482 7 GQGPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDE 80 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~ 80 (234)
+..|.+|++||+.+++. ..+.++..+.+.||+|++++.||+|.|.-... .-|+ ..+.+|+.++++.+ .. .
T Consensus 123 ~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTp-r~f~-ag~t~Dl~~~v~~i~~~~P~--a 198 (409)
T KOG1838|consen 123 GTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTP-RLFT-AGWTEDLREVVNHIKKRYPQ--A 198 (409)
T ss_pred CCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCC-ceee-cCCHHHHHHHHHHHHHhCCC--C
Confidence 45699999999976543 34778888888899999999999999877662 2333 33456666666554 44 7
Q ss_pred cEEEEEeChHHHHHHHHHHhccc--cccceeeeccCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRAN--RIKALVNLSVVFN 116 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~ 116 (234)
++..+|.||||++.+.|..+-.+ .+.+.+.++.+..
T Consensus 199 ~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 199 PLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred ceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 89999999999999999976433 3455555554444
No 78
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.60 E-value=2.6e-14 Score=109.86 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=71.7
Q ss_pred CceEEEecCCCCcc-hhh-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCCcE
Q 038482 9 GPEILFLYGFPELR-YSR-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDEKV 82 (234)
Q Consensus 9 ~~~lv~ihG~~~~~-~~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~~~ 82 (234)
.|.||++||+.|+. +.| +.+++++.++||.+++++.||++.+..... .-|+ ..+.+|+..+++.+ .. +++
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p-~~yh-~G~t~D~~~~l~~l~~~~~~--r~~ 150 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSP-RLYH-SGETEDIRFFLDWLKARFPP--RPL 150 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCc-ceec-ccchhHHHHHHHHHHHhCCC--Cce
Confidence 58999999996644 334 677899999999999999999999877542 2222 22236666666554 44 899
Q ss_pred EEEEeChHH-HHHHHHHHhcc-ccccceeeeccCCC
Q 038482 83 FVVGHDSGT-YMACFLCSFRA-NRIKALVNLSVVFN 116 (234)
Q Consensus 83 ~l~GhS~Gg-~ia~~~a~~~p-~~v~~lvl~~~~~~ 116 (234)
..+|.|+|| +++..++.+-. -.+.+.+.++.+..
T Consensus 151 ~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~D 186 (345)
T COG0429 151 YAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFD 186 (345)
T ss_pred EEEEecccHHHHHHHHHhhccCcccceeeeeeCHHH
Confidence 999999999 55555554322 23556666654443
No 79
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.59 E-value=4.7e-14 Score=110.10 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=89.9
Q ss_pred CcccccCC-----CceEEEecCCCCcchhh-----------HHHH---HHHHhcCCeEEeecCCCCC-CCCccc--ccc-
Q 038482 1 MHVAEKGQ-----GPEILFLYGFPELRYSR-----------CHQT---IALASLSYRAVAPDLRGFG-DTDELL--EMT- 57 (234)
Q Consensus 1 l~~~~~g~-----~~~lv~ihG~~~~~~~~-----------~~~~---~~l~~~g~~v~~~D~~G~G-~S~~~~--~~~- 57 (234)
+.|+..|. .++|+++|++.+++... +.++ +.+.-..|.||+.|-.|.. .|+.|. ++.
T Consensus 38 vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g 117 (368)
T COG2021 38 VAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGG 117 (368)
T ss_pred EEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCC
Confidence 35666662 46899999999865543 3332 1233224999999998876 555554 222
Q ss_pred --------cccHHHHHHHHHHHHHhcCCCCCcEE-EEEeChHHHHHHHHHHhccccccceeeeccCCCCCC
Q 038482 58 --------SYTCFHVIGDLIGLIDLVAPNDEKVF-VVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNT 119 (234)
Q Consensus 58 --------~~~~~~~a~dl~~~~~~~~~~~~~~~-l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 119 (234)
.+|++|++..-..+++++|+ +++. |||-|||||.+++.+..+|++|+++|.++++...++
T Consensus 118 ~~yg~~FP~~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~ 186 (368)
T COG2021 118 KPYGSDFPVITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSA 186 (368)
T ss_pred CccccCCCcccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCH
Confidence 36899999999999999999 8885 999999999999999999999999999998776544
No 80
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.59 E-value=1.3e-14 Score=124.91 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=76.9
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcc---------c-ccc-----------cccHHHHHHHH
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL---------L-EMT-----------SYTCFHVIGDL 68 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~---------~-~~~-----------~~~~~~~a~dl 68 (234)
|+|||+||++++...|..+++.|.++||+|+++|+||||.|... . ... ..+++..+.|+
T Consensus 450 P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dl 529 (792)
T TIGR03502 450 PVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDL 529 (792)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHH
Confidence 58999999999999999999999988999999999999999443 1 111 13789999999
Q ss_pred HHHHHhcC--------------CCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 69 IGLIDLVA--------------PNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 69 ~~~~~~~~--------------~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
..+...+. ..+.+++++||||||.++..++...
T Consensus 530 l~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 530 LGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred HHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 99888776 1126899999999999999999753
No 81
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.59 E-value=3e-14 Score=107.13 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=62.5
Q ss_pred hHHHHHHHHhcCCeEEeecCCCCCCCCcccc--cccccHHHHHHHHHHHHHhc----CCCCCcEEEEEeChHHHHHHHHH
Q 038482 25 RCHQTIALASLSYRAVAPDLRGFGDTDELLE--MTSYTCFHVIGDLIGLIDLV----APNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 25 ~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~--~~~~~~~~~a~dl~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
|......|+++||.|+.+|+||.+....... .....-....+|+.+.++.+ .+.++++.++|+|+||.+++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 4566778888999999999999885333220 00111123345555444443 23237999999999999999999
Q ss_pred HhccccccceeeeccCCCC
Q 038482 99 SFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 99 ~~~p~~v~~lvl~~~~~~~ 117 (234)
.++|++++++|..++....
T Consensus 83 ~~~~~~f~a~v~~~g~~d~ 101 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDL 101 (213)
T ss_dssp HHTCCGSSEEEEESE-SST
T ss_pred cccceeeeeeeccceecch
Confidence 9999999999988876544
No 82
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.57 E-value=3.7e-14 Score=106.59 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=75.5
Q ss_pred CCceEEEecCCCCcchhhH---HHHHHHHhcCCeEEeecCCCCCCCCcccc---c-----ccccHHHHHHHHHHHHHhcC
Q 038482 8 QGPEILFLYGFPELRYSRC---HQTIALASLSYRAVAPDLRGFGDTDELLE---M-----TSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~---~~~~~l~~~g~~v~~~D~~G~G~S~~~~~---~-----~~~~~~~~a~dl~~~~~~~~ 76 (234)
+.|.||++||.+++...|. .+.+.+.+.||.|+++|.+|++.+....+ . ......++.+.+..+.+..+
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYS 91 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999887775 35555556689999999999875432110 0 00111222222222223334
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+.+++++|+||||||.+++.++.++|+++.+++.+++...
T Consensus 92 id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred cChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 4336899999999999999999999999999988887654
No 83
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.57 E-value=6.8e-14 Score=116.02 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=85.6
Q ss_pred CceEEEecCCCCcchhh-----HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCC
Q 038482 9 GPEILFLYGFPELRYSR-----CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APND 79 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~ 79 (234)
++|||+|+.+-....+| ..+++.|.++|++|+++|+++-+.+. ...+++++++.+.+.++.. +.
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~-----r~~~ldDYv~~i~~Ald~V~~~tG~-- 287 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAH-----REWGLSTYVDALKEAVDAVRAITGS-- 287 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhh-----cCCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 57999999999777777 48899999999999999999865553 3457888887777777665 56
Q ss_pred CcEEEEEeChHHHHHHH----HHHhccc-cccceeeeccCCCCC
Q 038482 80 EKVFVVGHDSGTYMACF----LCSFRAN-RIKALVNLSVVFNPN 118 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~----~a~~~p~-~v~~lvl~~~~~~~~ 118 (234)
+++.++|+||||.++.. +++++++ +|++++++.++...+
T Consensus 288 ~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 288 RDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred CCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 89999999999999886 7788885 899999999877763
No 84
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.56 E-value=4.4e-14 Score=121.63 Aligned_cols=186 Identities=17% Similarity=0.159 Sum_probs=111.6
Q ss_pred ceEEEecCCCCcchh--hHHHHHHHHhcCCeEEeecCCCCCCCCc---cc---ccccccHHHHHHHHHHHHHhcCCC-CC
Q 038482 10 PEILFLYGFPELRYS--RCHQTIALASLSYRAVAPDLRGFGDTDE---LL---EMTSYTCFHVIGDLIGLIDLVAPN-DE 80 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~--~~~~~~~l~~~g~~v~~~D~~G~G~S~~---~~---~~~~~~~~~~a~dl~~~~~~~~~~-~~ 80 (234)
|.||++||.+..... |....+.|...||.|+.++.||.+.-.. .. +.....++++.+.+. ++...+.. ++
T Consensus 395 P~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ 473 (620)
T COG1506 395 PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPE 473 (620)
T ss_pred CEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChH
Confidence 789999999865554 6777888999999999999997554211 11 112335555555555 44444433 36
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGY 160 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
++.++|||.||++++..+.+.| ++++.+...+.... ...+... ... ... ......
T Consensus 474 ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~---------~~~~~~~-~~~----~~~-------~~~~~~--- 528 (620)
T COG1506 474 RIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDW---------LLYFGES-TEG----LRF-------DPEENG--- 528 (620)
T ss_pred HeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchh---------hhhcccc-chh----hcC-------CHHHhC---
Confidence 8999999999999999999888 78777776664432 1110000 000 000 000000
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc--------ccccccCCCCCceeEEeCCCCCccc
Q 038482 161 GHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH--------KGEFRSDVPLLEEVTIMEGVGHFIN 231 (234)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~--------~~~~~~~~~~~~~~~~~~~agH~~~ 231 (234)
..+.+ ..+.+...... .....+++| |||||++|.-| .+.+.+.-.+. +++++|+.||.+.
T Consensus 529 --------~~~~~-~~~~~~~~sp~-~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~-~~~~~p~e~H~~~ 597 (620)
T COG1506 529 --------GGPPE-DREKYEDRSPI-FYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPV-ELVVFPDEGHGFS 597 (620)
T ss_pred --------CCccc-ChHHHHhcChh-hhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceE-EEEEeCCCCcCCC
Confidence 01111 12222221111 111229999 88999999887 23344444455 9999999999875
Q ss_pred c
Q 038482 232 Q 232 (234)
Q Consensus 232 ~ 232 (234)
-
T Consensus 598 ~ 598 (620)
T COG1506 598 R 598 (620)
T ss_pred C
Confidence 3
No 85
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.53 E-value=1.5e-13 Score=104.41 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=85.2
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
++|+|+|+.+++...|.++++.|....+.|+.++.+|.+.... ...+++++|+...+.+...... +++.|+|||+
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~----~~~si~~la~~y~~~I~~~~~~-gp~~L~G~S~ 75 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEP----PPDSIEELASRYAEAIRARQPE-GPYVLAGWSF 75 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSH----EESSHHHHHHHHHHHHHHHTSS-SSEEEEEETH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCC----CCCCHHHHHHHHHHHhhhhCCC-CCeeehccCc
Confidence 4899999999999999999999988338999999999983333 3479999999999999887762 3999999999
Q ss_pred HHHHHHHHHHhc---cccccceeeeccCCC
Q 038482 90 GTYMACFLCSFR---ANRIKALVNLSVVFN 116 (234)
Q Consensus 90 Gg~ia~~~a~~~---p~~v~~lvl~~~~~~ 116 (234)
||.+|+++|.+. ...|..+++++++..
T Consensus 76 Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 76 GGILAFEMARQLEEAGEEVSRLILIDSPPP 105 (229)
T ss_dssp HHHHHHHHHHHHHHTT-SESEEEEESCSST
T ss_pred cHHHHHHHHHHHHHhhhccCceEEecCCCC
Confidence 999999999764 345889999997553
No 86
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.50 E-value=6.4e-14 Score=119.37 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCceEEEecCCCCcch---hh-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC---CC
Q 038482 8 QGPEILFLYGFPELRY---SR-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN---DE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~---~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~---~~ 80 (234)
+.|+||++||++.+.. .+ ......|.++||.|+++|+||+|.|.... ..++ ...++|+.++++.+... +.
T Consensus 21 ~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~--~~~~-~~~~~D~~~~i~~l~~q~~~~~ 97 (550)
T TIGR00976 21 PVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEF--DLLG-SDEAADGYDLVDWIAKQPWCDG 97 (550)
T ss_pred CCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCce--EecC-cccchHHHHHHHHHHhCCCCCC
Confidence 4589999999997653 22 23456788889999999999999998765 2333 56788888888766321 26
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++.++|+|+||.+++.+|.++|++++++|..++...
T Consensus 98 ~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 98 NVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred cEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 899999999999999999999999999998887654
No 87
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.50 E-value=5.6e-13 Score=124.34 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=89.5
Q ss_pred cCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 6 KGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 6 ~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
.|++++++|+||++++...|..+++.|.+. ++|+.+|++|++.+.. ..++++++++++.+.++.+... ++++++
T Consensus 1065 ~~~~~~l~~lh~~~g~~~~~~~l~~~l~~~-~~v~~~~~~g~~~~~~----~~~~l~~la~~~~~~i~~~~~~-~p~~l~ 1138 (1296)
T PRK10252 1065 EGDGPTLFCFHPASGFAWQFSVLSRYLDPQ-WSIYGIQSPRPDGPMQ----TATSLDEVCEAHLATLLEQQPH-GPYHLL 1138 (1296)
T ss_pred cCCCCCeEEecCCCCchHHHHHHHHhcCCC-CcEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHhhCCC-CCEEEE
Confidence 345689999999999999999999999885 9999999999986532 4589999999999999887641 589999
Q ss_pred EeChHHHHHHHHHHh---ccccccceeeeccCC
Q 038482 86 GHDSGTYMACFLCSF---RANRIKALVNLSVVF 115 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~---~p~~v~~lvl~~~~~ 115 (234)
||||||.+++++|.+ .++++..++++++..
T Consensus 1139 G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1139 GYSLGGTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred EechhhHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 999999999999985 577899999998643
No 88
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.50 E-value=4.7e-13 Score=101.04 Aligned_cols=105 Identities=24% Similarity=0.232 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCC---CCcccccccc------cHHHHHHHHHHHHHhcCCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGD---TDELLEMTSY------TCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~---S~~~~~~~~~------~~~~~a~dl~~~~~~~~~~ 78 (234)
+.|.||++|++.+-....+.+++.|++.||.|++||+-+-.. ++........ ..+...+++.+.++.+.-.
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 568999999999988888899999999999999999654333 1111100000 1345667776666655221
Q ss_pred ----CCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 79 ----DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 79 ----~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
.+++.++|+|+||.+++.++.+. .++++.|..-+
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 26899999999999999998876 56887776665
No 89
>PRK10162 acetyl esterase; Provisional
Probab=99.48 E-value=1.5e-12 Score=103.60 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=74.6
Q ss_pred CCceEEEecCCC---CcchhhHHHHHHHHh-cCCeEEeecCCCCCCCCcccccccccHHHH---HHHHHHHHHhcCCCCC
Q 038482 8 QGPEILFLYGFP---ELRYSRCHQTIALAS-LSYRAVAPDLRGFGDTDELLEMTSYTCFHV---IGDLIGLIDLVAPNDE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~---a~dl~~~~~~~~~~~~ 80 (234)
+.|+||++||.+ ++...|+.+++.|.+ .|+.|+.+|+|......- +..+++. .+.+.+..+.+++..+
T Consensus 80 ~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~-----p~~~~D~~~a~~~l~~~~~~~~~d~~ 154 (318)
T PRK10162 80 SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARF-----PQAIEEIVAVCCYFHQHAEDYGINMS 154 (318)
T ss_pred CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCC-----CCcHHHHHHHHHHHHHhHHHhCCChh
Confidence 358899999976 677788889999987 489999999996443221 2233333 3333333445665336
Q ss_pred cEEEEEeChHHHHHHHHHHhc------cccccceeeeccCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFR------ANRIKALVNLSVVFN 116 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~------p~~v~~lvl~~~~~~ 116 (234)
+++++|+|+||.+++.++.+. +.++.++|++.+...
T Consensus 155 ~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 155 RIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYG 196 (318)
T ss_pred HEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccC
Confidence 899999999999999998753 357888998887554
No 90
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.48 E-value=1.9e-13 Score=85.35 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=58.1
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLID 73 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~ 73 (234)
+.+|+++||++.++..|..+++.|+++||.|+++|+||||.|+.... ...+++++++|+..+++
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg-~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRG-HIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCccc-ccCCHHHHHHHHHHHhC
Confidence 56999999999999999999999999999999999999999997553 56699999999998874
No 91
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.47 E-value=2.5e-13 Score=102.34 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCceEEEecCCCCcchhhHHHHHH-HHhcCCeEEeecCCC------CCCC--Cc------ccc--cccccHHHHHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIA-LASLSYRAVAPDLRG------FGDT--DE------LLE--MTSYTCFHVIGDLIG 70 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~-l~~~g~~v~~~D~~G------~G~S--~~------~~~--~~~~~~~~~a~dl~~ 70 (234)
..+.|||+||+|.+...|..+... +...+.+++.++-|- .|.. .. ... .....+++.++.+.+
T Consensus 13 ~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~ 92 (216)
T PF02230_consen 13 AKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDE 92 (216)
T ss_dssp -SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHHH
Confidence 357999999999999777766552 222246777775542 1220 11 000 012234444555555
Q ss_pred HHHhc---CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 71 LIDLV---APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 71 ~~~~~---~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
+++.+ ++..++++|+|+|+||++++.++.++|+.+.++|.+++..
T Consensus 93 li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~ 140 (216)
T PF02230_consen 93 LIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYL 140 (216)
T ss_dssp HHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---
T ss_pred HHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccc
Confidence 55532 3433789999999999999999999999999999999754
No 92
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.46 E-value=3.6e-12 Score=92.90 Aligned_cols=163 Identities=21% Similarity=0.199 Sum_probs=103.8
Q ss_pred EEEecCCCCcchhhH--HHHHHHHhcC--CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 12 ILFLYGFPELRYSRC--HQTIALASLS--YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 12 lv~ihG~~~~~~~~~--~~~~~l~~~g--~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
|+.+||+.++..... .+.+.+.+.+ ..++.+|++ .+.+...+.+.++++.... +.+.|+|.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------~~p~~a~~~l~~~i~~~~~--~~~~liGS 66 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------PFPEEAIAQLEQLIEELKP--ENVVLIGS 66 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------cCHHHHHHHHHHHHHhCCC--CCeEEEEE
Confidence 789999999887764 3355566543 466777764 3556677888999988887 77999999
Q ss_pred ChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCCCCCC
Q 038482 88 DSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPPDAI 167 (234)
Q Consensus 88 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (234)
||||..|..++.+++ +++ |+++|...+ ...++..++....... .
T Consensus 67 SlGG~~A~~La~~~~--~~a-vLiNPav~p---------~~~l~~~iG~~~~~~~-~----------------------- 110 (187)
T PF05728_consen 67 SLGGFYATYLAERYG--LPA-VLINPAVRP---------YELLQDYIGEQTNPYT-G----------------------- 110 (187)
T ss_pred ChHHHHHHHHHHHhC--CCE-EEEcCCCCH---------HHHHHHhhCccccCCC-C-----------------------
Confidence 999999999998875 333 899998876 3444443333211000 0
Q ss_pred CCCCCCCchhHHHHHHhhhcccCCcccc---eEeecCCcccc-ccccccCCCCCceeEEeCCCCCcc
Q 038482 168 IALPGWLSDEDIKYFTTKFDKNALLKES---TITKGVKEYIH-KGEFRSDVPLLEEVTIMEGVGHFI 230 (234)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P---lli~G~~D~~~-~~~~~~~~~~~~~~~~~~~agH~~ 230 (234)
....++...+.. .+.+.... ++.| +++.++.|.++ .+.......++ ...+.+|.+|-.
T Consensus 111 --e~~~~~~~~~~~-l~~l~~~~-~~~~~~~lvll~~~DEvLd~~~a~~~~~~~-~~~i~~ggdH~f 172 (187)
T PF05728_consen 111 --ESYELTEEHIEE-LKALEVPY-PTNPERYLVLLQTGDEVLDYREAVAKYRGC-AQIIEEGGDHSF 172 (187)
T ss_pred --ccceechHhhhh-cceEeccc-cCCCccEEEEEecCCcccCHHHHHHHhcCc-eEEEEeCCCCCC
Confidence 001112111111 11111100 3334 88999999997 55566666777 666778889964
No 93
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.45 E-value=2.6e-12 Score=103.64 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=85.4
Q ss_pred ceEEEecCCCCcchhh-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSR-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|+||++..+.+..... +.+++.|.+ |++|+..|+..-+..+... ...+++++++-+.++++.+|. + ++|+|+|
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~--~~f~ldDYi~~l~~~i~~~G~--~-v~l~GvC 176 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSA--GKFDLEDYIDYLIEFIRFLGP--D-IHVIAVC 176 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhc--CCCCHHHHHHHHHHHHHHhCC--C-CcEEEEc
Confidence 7999999998766554 678999999 8999999997666443333 567999999999999999987 6 9999999
Q ss_pred hHHHHHHHHHHhc-----cccccceeeeccCCCCC
Q 038482 89 SGTYMACFLCSFR-----ANRIKALVNLSVVFNPN 118 (234)
Q Consensus 89 ~Gg~ia~~~a~~~-----p~~v~~lvl~~~~~~~~ 118 (234)
+||..++.+++.+ |++++.+++++++....
T Consensus 177 qgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 177 QPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred hhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCC
Confidence 9999977776654 66799999999988874
No 94
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.45 E-value=1.6e-12 Score=104.10 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=71.2
Q ss_pred CceEEEecCCCCcchhhHHH-HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC-CCCCcEEEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQ-TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA-PNDEKVFVVG 86 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~-~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~-~~~~~~~l~G 86 (234)
.|+||++-|+-+-...+..+ .+.|...|+.++++|+||.|.|....- ..+.+.+-+.+.+.+.... +...++.++|
T Consensus 190 ~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l--~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G 267 (411)
T PF06500_consen 190 YPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPL--TQDSSRLHQAVLDYLASRPWVDHTRVGAWG 267 (411)
T ss_dssp EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S---S-CCHHHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCC--CcCHHHHHHHHHHHHhcCCccChhheEEEE
Confidence 47888888888888776544 566888899999999999999865441 1222345555565555442 1126899999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.|+||++|..+|..+++|++++|..+++..
T Consensus 268 ~SfGGy~AvRlA~le~~RlkavV~~Ga~vh 297 (411)
T PF06500_consen 268 FSFGGYYAVRLAALEDPRLKAVVALGAPVH 297 (411)
T ss_dssp ETHHHHHHHHHHHHTTTT-SEEEEES---S
T ss_pred eccchHHHHHHHHhcccceeeEeeeCchHh
Confidence 999999999999999999999999998764
No 95
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.44 E-value=4.2e-13 Score=96.72 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=63.1
Q ss_pred EEEecCCCCcc-hhhHHHH-HHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 12 ILFLYGFPELR-YSRCHQT-IALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 12 lv~ihG~~~~~-~~~~~~~-~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
|++|||++++. ..|.+.. +.|.+. ++|-.+|+ +..+++++.+.+.+.+.... ++++|||||+
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~------------~~P~~~~W~~~l~~~i~~~~---~~~ilVaHSL 64 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW------------DNPDLDEWVQALDQAIDAID---EPTILVAHSL 64 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--------------TS--HHHHHHHHHHCCHC-T---TTEEEEEETH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc------------CCCCHHHHHHHHHHHHhhcC---CCeEEEEeCH
Confidence 68999998875 5686664 556665 78887776 23467888888887777543 6799999999
Q ss_pred HHHHHHHHH-HhccccccceeeeccCC
Q 038482 90 GTYMACFLC-SFRANRIKALVNLSVVF 115 (234)
Q Consensus 90 Gg~ia~~~a-~~~p~~v~~lvl~~~~~ 115 (234)
|+..++.++ ...+.+|++++|+++.-
T Consensus 65 Gc~~~l~~l~~~~~~~v~g~lLVAp~~ 91 (171)
T PF06821_consen 65 GCLTALRWLAEQSQKKVAGALLVAPFD 91 (171)
T ss_dssp HHHHHHHHHHHTCCSSEEEEEEES--S
T ss_pred HHHHHHHHHhhcccccccEEEEEcCCC
Confidence 999999999 67788999999999754
No 96
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.40 E-value=8.4e-12 Score=94.13 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhc--------CCeEEeecCCCCCCCCcccccccccHHHHHH----HHHHHHHhc
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASL--------SYRAVAPDLRGFGDTDELLEMTSYTCFHVIG----DLIGLIDLV 75 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~--------g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~----dl~~~~~~~ 75 (234)
++.|||||||..++...|+.+...+.+. .++++.+|+......-. ...+.+.++ .+..+++..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~-----g~~l~~q~~~~~~~i~~i~~~~ 77 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH-----GRTLQRQAEFLAEAIKYILELY 77 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccc-----cccHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999988887666321 37899999876432211 123333333 333343434
Q ss_pred ---CCCCCcEEEEEeChHHHHHHHHHHhcc---ccccceeeeccCCCCCC
Q 038482 76 ---APNDEKVFVVGHDSGTYMACFLCSFRA---NRIKALVNLSVVFNPNT 119 (234)
Q Consensus 76 ---~~~~~~~~l~GhS~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~~~~ 119 (234)
...++++++|||||||.++..++...+ +.|+.+|.+++|....+
T Consensus 78 ~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g~~ 127 (225)
T PF07819_consen 78 KSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRGSP 127 (225)
T ss_pred hhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCCcc
Confidence 111389999999999999988876533 57999999998776544
No 97
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=88.04 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=62.5
Q ss_pred CceEEEecCCC-----CcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE
Q 038482 9 GPEILFLYGFP-----ELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF 83 (234)
Q Consensus 9 ~~~lv~ihG~~-----~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~ 83 (234)
.|..|+.|--+ .+...-..++..|.+.||.++.+|+||-|.|..+-+...--.+|... +.++++.....-..+.
T Consensus 28 ~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~a-aldW~~~~hp~s~~~~ 106 (210)
T COG2945 28 APIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAA-ALDWLQARHPDSASCW 106 (210)
T ss_pred CceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHH-HHHHHHhhCCCchhhh
Confidence 35556666543 34445566788899999999999999999999877422222233222 2233333322002347
Q ss_pred EEEeChHHHHHHHHHHhccc
Q 038482 84 VVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~ 103 (234)
|.|+|+|++|++.+|.+.|+
T Consensus 107 l~GfSFGa~Ia~~la~r~~e 126 (210)
T COG2945 107 LAGFSFGAYIAMQLAMRRPE 126 (210)
T ss_pred hcccchHHHHHHHHHHhccc
Confidence 89999999999999999887
No 98
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=6.3e-12 Score=95.60 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=88.7
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
|||+|+|+.++....|.++..+|.+. ..|+.++.||++.... ...+++++++...+.|...... .+++|+|||+
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~----~~~~l~~~a~~yv~~Ir~~QP~-GPy~L~G~S~ 74 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQ----PFASLDDMAAAYVAAIRRVQPE-GPYVLLGWSL 74 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCccccccc----ccCCHHHHHHHHHHHHHHhCCC-CCEEEEeecc
Confidence 68999999999999999999999997 9999999999987443 3469999999999888887663 7999999999
Q ss_pred HHHHHHHHHHh---ccccccceeeeccCCC
Q 038482 90 GTYMACFLCSF---RANRIKALVNLSVVFN 116 (234)
Q Consensus 90 Gg~ia~~~a~~---~p~~v~~lvl~~~~~~ 116 (234)
||.+|...|.+ ..+.|..++++++...
T Consensus 75 GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 75 GGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred ccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 99999999976 3456999999998776
No 99
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.37 E-value=1.1e-11 Score=95.98 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=93.3
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhc---CCeEEeecCCCCCCCCccc----ccccccHHHHHHHHHHHHHhcCC----
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASL---SYRAVAPDLRGFGDTDELL----EMTSYTCFHVIGDLIGLIDLVAP---- 77 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~---g~~v~~~D~~G~G~S~~~~----~~~~~~~~~~a~dl~~~~~~~~~---- 77 (234)
.+.++||+|.+|-...|.++.+.|.+. .+.|+++.+.||-.++... +...++++++++-..++++.+-.
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 357899999999999999999998743 5999999999998877762 24689999999999888877643
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhcc---ccccceeeeccCCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRA---NRIKALVNLSVVFNP 117 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~~ 117 (234)
.+.+++|+|||+|++|+++++.+.+ .+|++++++-|....
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIED 124 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcccc
Confidence 3478999999999999999999999 789999999987655
No 100
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.29 E-value=2.1e-10 Score=84.70 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=96.9
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeec-CCCCCCCCcccccccccHHHHHHHHHHHHHhc---CCCCCcEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPD-LRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV---APNDEKVFV 84 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D-~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~---~~~~~~~~l 84 (234)
.++||+.+|++..-..|..++.+|+.+||+|+.+| +..-|.|++.- ..++++...+++..+++.+ |. .++-|
T Consensus 30 ~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I--~eftms~g~~sL~~V~dwl~~~g~--~~~GL 105 (294)
T PF02273_consen 30 NNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDI--NEFTMSIGKASLLTVIDWLATRGI--RRIGL 105 (294)
T ss_dssp S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B---------------HHHHHHHHHHHHHHHHHTT-----EEE
T ss_pred CCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCCh--hhcchHHhHHHHHHHHHHHHhcCC--Ccchh
Confidence 47999999999999999999999999999999999 45568898887 7899999999988777655 67 89999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCccccccc---------ccCcchHHHHHHh
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGG---------IHEPGEIEAQFEQ 155 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 155 (234)
+.-|+.|.+|+..|.+- .+..+|..-+.... ...+.+.....+.... +..-.+....|..
T Consensus 106 IAaSLSaRIAy~Va~~i--~lsfLitaVGVVnl---------r~TLe~al~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~ 174 (294)
T PF02273_consen 106 IAASLSARIAYEVAADI--NLSFLITAVGVVNL---------RDTLEKALGYDYLQLPIEQLPEDLDFEGHNLGAEVFVT 174 (294)
T ss_dssp EEETTHHHHHHHHTTTS----SEEEEES--S-H---------HHHHHHHHSS-GGGS-GGG--SEEEETTEEEEHHHHHH
T ss_pred hhhhhhHHHHHHHhhcc--CcceEEEEeeeeeH---------HHHHHHHhccchhhcchhhCCCcccccccccchHHHHH
Confidence 99999999999999853 36666655544432 3333333333222111 0111111222222
Q ss_pred hhhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc-ccc---ccc-CCCCCceeEEeCCCCCc
Q 038482 156 ISKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH-KGE---FRS-DVPLLEEVTIMEGVGHF 229 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~-~~~---~~~-~~~~~~~~~~~~~agH~ 229 (234)
..- ...|-+ ++.-.+.... +++| +.+++++|.++ +.+ +.. ...+.+++..++|++|-
T Consensus 175 dc~-----------e~~w~~---l~ST~~~~k~---l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~Hd 237 (294)
T PF02273_consen 175 DCF-----------EHGWDD---LDSTINDMKR---LSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHD 237 (294)
T ss_dssp HHH-----------HTT-SS---HHHHHHHHTT-----S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-
T ss_pred HHH-----------HcCCcc---chhHHHHHhh---CCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccch
Confidence 221 011221 1122222222 8999 66999999887 222 222 22333599999999997
Q ss_pred cc
Q 038482 230 IN 231 (234)
Q Consensus 230 ~~ 231 (234)
+.
T Consensus 238 L~ 239 (294)
T PF02273_consen 238 LG 239 (294)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 101
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.29 E-value=2.6e-11 Score=96.20 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=85.9
Q ss_pred CceEEEecCCCCcchhhH-----HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE
Q 038482 9 GPEILFLYGFPELRYSRC-----HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF 83 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~-----~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~ 83 (234)
++|++++|-+-....+|+ .++..|.++|..|+.+|+++=..+....+.++|-.+.+.+.+..+.+..+. +++.
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg~--~~In 184 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQ--KDIN 184 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHHHHHHHHHHhCc--cccc
Confidence 579999999988877775 678899999999999999876655554433445555555666666677788 9999
Q ss_pred EEEeChHHHHHHHHHHhcccc-ccceeeeccCCCC
Q 038482 84 VVGHDSGTYMACFLCSFRANR-IKALVNLSVVFNP 117 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~ 117 (234)
++|+|+||++...+++.++.+ |+.++++.++...
T Consensus 185 liGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 185 LIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred eeeEecchHHHHHHHHhhhhcccccceeeecchhh
Confidence 999999999998888888776 9999999887776
No 102
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.29 E-value=1.5e-11 Score=100.86 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=76.0
Q ss_pred CcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 20 ELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 20 ~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.....|..+++.|.+.||.+ ..|++|+|.+.+........++++.+.++++.+..+. ++++|+||||||.+++.++.
T Consensus 105 ~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~--~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 105 DEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASGG--KKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred chHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHHHHHHHHHHcCC--CCEEEEEECHhHHHHHHHHH
Confidence 45678999999999998754 8999999998776521233455666666666666777 89999999999999999998
Q ss_pred hcccc----ccceeeeccCCCCCC
Q 038482 100 FRANR----IKALVNLSVVFNPNT 119 (234)
Q Consensus 100 ~~p~~----v~~lvl~~~~~~~~~ 119 (234)
++|+. |+++|.++++....+
T Consensus 182 ~~p~~~~k~I~~~I~la~P~~Gs~ 205 (440)
T PLN02733 182 LHSDVFEKYVNSWIAIAAPFQGAP 205 (440)
T ss_pred HCCHhHHhHhccEEEECCCCCCCc
Confidence 88864 788899988766543
No 103
>COG0400 Predicted esterase [General function prediction only]
Probab=99.28 E-value=5.9e-11 Score=87.69 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=74.3
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccc--------ccccc-------cHHHHHHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL--------EMTSY-------TCFHVIGDLIGLID 73 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~--------~~~~~-------~~~~~a~dl~~~~~ 73 (234)
.|+||++||+|++...+-+..+.+..+ +.++.+- | ...... +...+ ..+.+++-+.+..+
T Consensus 18 ~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~r--G--~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~ 92 (207)
T COG0400 18 APLLILLHGLGGDELDLVPLPELILPN-ATLVSPR--G--PVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAE 92 (207)
T ss_pred CcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcCC--C--CccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 467999999999999998877666664 6776652 2 111111 11222 33444555555556
Q ss_pred hcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 74 LVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 74 ~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+.++..++++++|+|.|+++++.+..++|+.++++|++++...
T Consensus 93 ~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~ 135 (207)
T COG0400 93 EYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLP 135 (207)
T ss_pred HhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCC
Confidence 6666557999999999999999999999999999999997553
No 104
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.27 E-value=1.2e-10 Score=92.30 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=99.7
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCC-CCccc----------------c-cccccHHHHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGD-TDELL----------------E-MTSYTCFHVIGDLI 69 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~-S~~~~----------------~-~~~~~~~~~a~dl~ 69 (234)
+-|.||.+||+++....|...+. ++.+||-|+.+|.||.|. |.... + ++.+-+..+..|..
T Consensus 82 ~~Pavv~~hGyg~~~~~~~~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ 160 (320)
T PF05448_consen 82 KLPAVVQFHGYGGRSGDPFDLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAV 160 (320)
T ss_dssp SEEEEEEE--TT--GGGHHHHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHH
T ss_pred CcCEEEEecCCCCCCCCcccccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHH
Confidence 44899999999999888877654 556699999999999993 22111 0 12223445566766
Q ss_pred HHHHhcCCC----CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcC-ccccccccc
Q 038482 70 GLIDLVAPN----DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYG-DDYYIGGIH 144 (234)
Q Consensus 70 ~~~~~~~~~----~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 144 (234)
..++.+.-. ++++.+.|.|+||.+++.+|+..| ||++++...|.... ....-.... ...+.
T Consensus 161 ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d---------~~~~~~~~~~~~~y~---- 226 (320)
T PF05448_consen 161 RAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCD---------FRRALELRADEGPYP---- 226 (320)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSS---------HHHHHHHT--STTTH----
T ss_pred HHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccc---------hhhhhhcCCccccHH----
Confidence 666654211 368999999999999999998765 69888887764433 111111000 00000
Q ss_pred CcchHHHHHHhhhhcCCCCCCCCCCCCCCCchhHH--HHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCC
Q 038482 145 EPGEIEAQFEQISKGYGHPPDAIIALPGWLSDEDI--KYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLL 217 (234)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~ 217 (234)
.....+.... ......++.+ ..|.+...-...|+|| ++-.|-.|.+| .-.....++.-
T Consensus 227 ---~~~~~~~~~d------------~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~ 291 (320)
T PF05448_consen 227 ---EIRRYFRWRD------------PHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGP 291 (320)
T ss_dssp ---HHHHHHHHHS------------CTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SS
T ss_pred ---HHHHHHhccC------------CCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCC
Confidence 0011111000 0000001111 1233333323339999 78999999998 22333444433
Q ss_pred ceeEEeCCCCCccc
Q 038482 218 EEVTIMEGVGHFIN 231 (234)
Q Consensus 218 ~~~~~~~~agH~~~ 231 (234)
+++.++|..||...
T Consensus 292 K~l~vyp~~~He~~ 305 (320)
T PF05448_consen 292 KELVVYPEYGHEYG 305 (320)
T ss_dssp EEEEEETT--SSTT
T ss_pred eeEEeccCcCCCch
Confidence 59999999999764
No 105
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.26 E-value=3.3e-11 Score=91.22 Aligned_cols=105 Identities=29% Similarity=0.292 Sum_probs=77.7
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-c------CCCC
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-V------APND 79 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~------~~~~ 79 (234)
|.=|.+||+||+......|..+.+.++.+||-|+.+|+...+...... +.....++++.+.+=++. + ..
T Consensus 15 g~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~--~~~~~~~vi~Wl~~~L~~~l~~~v~~D~-- 90 (259)
T PF12740_consen 15 GTYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTD--EVASAAEVIDWLAKGLESKLPLGVKPDF-- 90 (259)
T ss_pred CCcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCcch--hHHHHHHHHHHHHhcchhhccccccccc--
Confidence 445899999999988888999999999999999999966544322211 223334444443332221 1 23
Q ss_pred CcEEEEEeChHHHHHHHHHHhc-----cccccceeeeccCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR-----ANRIKALVNLSVVF 115 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~-----p~~v~~lvl~~~~~ 115 (234)
.++.|+|||.||-+++.++..+ +.+++++++++|.-
T Consensus 91 s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 91 SKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred cceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 6899999999999999999887 56899999999855
No 106
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.25 E-value=2.9e-11 Score=94.14 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=89.6
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhc---C------CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASL---S------YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~---g------~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
.||+++|||+|+-..|..++.-|.+. | +.||+|.+||||.|+.+.. ...+..+.|..+..++-.+|. .
T Consensus 153 ~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk-~GFn~~a~ArvmrkLMlRLg~--n 229 (469)
T KOG2565|consen 153 KPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSK-TGFNAAATARVMRKLMLRLGY--N 229 (469)
T ss_pred cceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCcc-CCccHHHHHHHHHHHHHHhCc--c
Confidence 49999999999999999999998764 2 7899999999999999884 667889999999999999999 9
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceee
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVN 110 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl 110 (234)
++.+=|-.+|+.|+..+|..+|++|.++=+
T Consensus 230 kffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 230 KFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred eeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 999999999999999999999999988755
No 107
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.25 E-value=3.3e-10 Score=86.10 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=80.0
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCC-CCCCcccc-c---c-----cccHHHHHHHHHHHHHhcC---
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGF-GDTDELLE-M---T-----SYTCFHVIGDLIGLIDLVA--- 76 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-G~S~~~~~-~---~-----~~~~~~~a~dl~~~~~~~~--- 76 (234)
|.||++|++.+-....+.+++.|++.||.+++||+-+. |.+..... . . ..+..+...|+.+.++.+.
T Consensus 28 P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~ 107 (236)
T COG0412 28 PGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQP 107 (236)
T ss_pred CEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999997663 33322220 0 0 1223677788888777763
Q ss_pred -CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 77 -PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 77 -~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
..++++.++|+||||.+++.++.+.| ++++.|..-+..
T Consensus 108 ~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~ 146 (236)
T COG0412 108 QVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGL 146 (236)
T ss_pred CCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCC
Confidence 11278999999999999999999887 688877666543
No 108
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.24 E-value=8.1e-11 Score=86.10 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=112.2
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc-cccccHHHHH-HHHHHHHHhcCC--CCCcEEEEE
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE-MTSYTCFHVI-GDLIGLIDLVAP--NDEKVFVVG 86 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-~~~~~~~~~a-~dl~~~~~~~~~--~~~~~~l~G 86 (234)
.++.-.+.+.....|++++..+++.||.|+.+|+||.|+|+.... ...+++.|++ .|+.+.++.++- ...+...||
T Consensus 32 ~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vg 111 (281)
T COG4757 32 RLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVG 111 (281)
T ss_pred cEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCCCceEEee
Confidence 455555566677788999999999999999999999999998772 2346676665 345555544422 126899999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhH-------------HHHhhhhcCcccccccccCcchHHHHH
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNW-------------IKALGAYYGDDYYIGGIHEPGEIEAQF 153 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
||+||.+.-++. +++ ++.+..+.++...-+......+- ....+..+.+.....--..+.-.-+.+
T Consensus 112 HS~GGqa~gL~~-~~~-k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW 189 (281)
T COG4757 112 HSFGGQALGLLG-QHP-KYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDW 189 (281)
T ss_pred ccccceeecccc-cCc-ccceeeEeccccccccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHH
Confidence 999998775554 344 45555555543332222111000 011111111111000001122222333
Q ss_pred HhhhhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEE
Q 038482 154 EQISKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTI 222 (234)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~ 222 (234)
.++.+.. ...+++..+..+.+.+.. +++| +.+..++|+.+ .+.+.+..+|+ .+..
T Consensus 190 ~RwcR~p----------~y~fddp~~~~~~q~yaa---VrtPi~~~~~~DD~w~P~As~d~f~~~y~nA-pl~~ 249 (281)
T COG4757 190 ARWCRHP----------RYYFDDPAMRNYRQVYAA---VRTPITFSRALDDPWAPPASRDAFASFYRNA-PLEM 249 (281)
T ss_pred HHHhcCc----------cccccChhHhHHHHHHHH---hcCceeeeccCCCCcCCHHHHHHHHHhhhcC-cccc
Confidence 3333221 122444555666777776 8999 66888999887 35566667776 4443
No 109
>PRK10115 protease 2; Provisional
Probab=99.24 E-value=1.9e-10 Score=100.07 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCCceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcCCC
Q 038482 7 GQGPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
++.|.||++||..+... .|......|.++||.|+.++.||-|.=.+.- .....+++|+...+..+++.--.+
T Consensus 443 ~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d 522 (686)
T PRK10115 443 GHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGS 522 (686)
T ss_pred CCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 45689999999887664 4777777888889999999999976533311 112356777777776666542222
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
++++.+.|.|.||+++...+.++|++++++|...|...
T Consensus 523 ~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D 560 (686)
T PRK10115 523 PSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVD 560 (686)
T ss_pred hHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchh
Confidence 47999999999999999999999999999998876554
No 110
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.19 E-value=3.7e-11 Score=89.54 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=53.9
Q ss_pred ceEEEecCCCC-cchhhHHHHHHHHhcCCe---EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC-CCCCcEEE
Q 038482 10 PEILFLYGFPE-LRYSRCHQTIALASLSYR---AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA-PNDEKVFV 84 (234)
Q Consensus 10 ~~lv~ihG~~~-~~~~~~~~~~~l~~~g~~---v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~-~~~~~~~l 84 (234)
.||||+||.++ ....|..+++.|.++||. ++++++-....+.... .....-+.++.+.++++..- -++.+|.+
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~--~~~~~~~~~~~l~~fI~~Vl~~TGakVDI 79 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQ--NAHMSCESAKQLRAFIDAVLAYTGAKVDI 79 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHH--HHHB-HHHHHHHHHHHHHHHHHHT--EEE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCccc--ccccchhhHHHHHHHHHHHHHhhCCEEEE
Confidence 58999999999 778999999999999998 7999873332212111 11112344466666666542 11259999
Q ss_pred EEeChHHHHHHHHHHh
Q 038482 85 VGHDSGTYMACFLCSF 100 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~ 100 (234)
|||||||.++..+...
T Consensus 80 VgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 80 VGHSMGGTIARYYIKG 95 (219)
T ss_dssp EEETCHHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHH
Confidence 9999999999888754
No 111
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.18 E-value=1.8e-09 Score=84.71 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=115.8
Q ss_pred CceEEEecCCCCcchhh-HHH-HHHHHhcCCeEEeecCCCCCCCCccccc--ccccHHHH----------HHHHHHHHHh
Q 038482 9 GPEILFLYGFPELRYSR-CHQ-TIALASLSYRAVAPDLRGFGDTDELLEM--TSYTCFHV----------IGDLIGLIDL 74 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~-~~~-~~~l~~~g~~v~~~D~~G~G~S~~~~~~--~~~~~~~~----------a~dl~~~~~~ 74 (234)
+|..|.+.|.|.+..-. ..+ +..|.+.|+..+.+..|=||...+.... .-.+..|+ +.-+..+++.
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~ 171 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLER 171 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHh
Confidence 57778888888754333 233 6778887999999999999987665421 11122222 2334555666
Q ss_pred cCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCC-----CchhHHHHhhhhcCcccccccccCcchH
Q 038482 75 VAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSV-----SNSNWIKALGAYYGDDYYIGGIHEPGEI 149 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
.|. .++.+.|.||||.+|...|...|..+..+-++++........ ..-.|....+. +....|...
T Consensus 172 ~G~--~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L~~q-~~~~~~~~~------- 241 (348)
T PF09752_consen 172 EGY--GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDALEKQ-FEDTVYEEE------- 241 (348)
T ss_pred cCC--CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHHHHH-hcccchhhh-------
Confidence 688 899999999999999999999999876666666543321110 00111111111 111111110
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCchhHHHHH---HhhhcccCCcccc------eEeecCCcccc----ccccccCCCC
Q 038482 150 EAQFEQISKGYGHPPDAIIALPGWLSDEDIKYF---TTKFDKNALLKES------TITKGVKEYIH----KGEFRSDVPL 216 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~P------lli~G~~D~~~----~~~~~~~~~~ 216 (234)
............... ......+.+.+... ...+++......| +++.+++|.++ ...+++..|+
T Consensus 242 ---~~~~~~~~~~~~~~~-~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~~Lq~~WPG 317 (348)
T PF09752_consen 242 ---ISDIPAQNKSLPLDS-MEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVLSLQEIWPG 317 (348)
T ss_pred ---hcccccCcccccchh-hccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcchHHHhCCC
Confidence 000000000000000 11222333333322 2233333334444 55999999998 4578889999
Q ss_pred CceeEEeCCCCCc
Q 038482 217 LEEVTIMEGVGHF 229 (234)
Q Consensus 217 ~~~~~~~~~agH~ 229 (234)
+ ++..++| ||.
T Consensus 318 s-EvR~l~g-GHV 328 (348)
T PF09752_consen 318 S-EVRYLPG-GHV 328 (348)
T ss_pred C-eEEEecC-CcE
Confidence 9 9999987 996
No 112
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.17 E-value=2.5e-09 Score=73.99 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=76.6
Q ss_pred eEEEecCCCCc--chhhHHHHHHHHhcCCeEEeecCCCC-----CCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE
Q 038482 11 EILFLYGFPEL--RYSRCHQTIALASLSYRAVAPDLRGF-----GDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF 83 (234)
Q Consensus 11 ~lv~ihG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G~-----G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~ 83 (234)
+||+.||.+.+ +......+..|+..|+.|..++++-. |...+++ ....-..++...+.++...+.- .+.+
T Consensus 16 tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~-~~~t~~~~~~~~~aql~~~l~~--gpLi 92 (213)
T COG3571 16 TILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPP-GSGTLNPEYIVAIAQLRAGLAE--GPLI 92 (213)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcC-ccccCCHHHHHHHHHHHhcccC--Ccee
Confidence 88999999865 44577888999999999999997642 3222222 1222335677777788777766 7999
Q ss_pred EEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 84 VVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+-|+||||.++-+++......|.++++++=++.+
T Consensus 93 ~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp 126 (213)
T COG3571 93 IGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP 126 (213)
T ss_pred eccccccchHHHHHHHhhcCCcceEEEecCccCC
Confidence 9999999999988887655559999998865543
No 113
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.17 E-value=5.8e-11 Score=89.08 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=81.0
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHH----hcCCeEEeecCCCC-----CCCCc---------cc-------c-----cc
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALA----SLSYRAVAPDLRGF-----GDTDE---------LL-------E-----MT 57 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~----~~g~~v~~~D~~G~-----G~S~~---------~~-------~-----~~ 57 (234)
.++-|||+||+++++..+......|. +.++.++.+|-|-- |...- .. . ..
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 46789999999999999987655544 42588888875421 11110 00 0 01
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc--------ccccceeeeccCCCCCCCCCchhHHHH
Q 038482 58 SYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA--------NRIKALVNLSVVFNPNTSVSNSNWIKA 129 (234)
Q Consensus 58 ~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p--------~~v~~lvl~~~~~~~~~~~~~~~~~~~ 129 (234)
...+++-.+.+.+.++..+. =.-|+|+|+||.+|..++.... ..++-+|++++.....+.
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP---fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP---FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp G---HHHHHHHHHHHHHH------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred ccCHHHHHHHHHHHHHhcCC---eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 23456667777777777653 3579999999999988885422 136677777754422110
Q ss_pred hhhhcCcccccccccCcchHHHHHHhhhhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc--
Q 038482 130 LGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH-- 206 (234)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~-- 206 (234)
+...+ ....|++| +-|+|++|.++
T Consensus 151 ----------------------------------------------------~~~~~-~~~~i~iPtlHv~G~~D~~~~~ 177 (212)
T PF03959_consen 151 ----------------------------------------------------YQELY-DEPKISIPTLHVIGENDPVVPP 177 (212)
T ss_dssp ----------------------------------------------------GTTTT---TT---EEEEEEETT-SSS-H
T ss_pred ----------------------------------------------------hhhhh-ccccCCCCeEEEEeCCCCCcch
Confidence 00001 11128999 66999999998
Q ss_pred --ccccccCCCC-CceeEEeCCCCCccccC
Q 038482 207 --KGEFRSDVPL-LEEVTIMEGVGHFINQE 233 (234)
Q Consensus 207 --~~~~~~~~~~-~~~~~~~~~agH~~~~e 233 (234)
.+.+.+.+.+ . ++...++ ||.++..
T Consensus 178 ~~s~~L~~~~~~~~-~v~~h~g-GH~vP~~ 205 (212)
T PF03959_consen 178 ERSEALAEMFDPDA-RVIEHDG-GHHVPRK 205 (212)
T ss_dssp HHHHHHHHHHHHHE-EEEEESS-SSS----
T ss_pred HHHHHHHHhccCCc-EEEEECC-CCcCcCC
Confidence 3566666666 6 7777765 9998753
No 114
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.16 E-value=3.2e-10 Score=85.05 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=63.3
Q ss_pred EEEecCCC---CcchhhHHHHHHHHh-cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh---cCCCCCcEEE
Q 038482 12 ILFLYGFP---ELRYSRCHQTIALAS-LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL---VAPNDEKVFV 84 (234)
Q Consensus 12 lv~ihG~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~---~~~~~~~~~l 84 (234)
||++||.+ ++......++..+.+ .|+.|+.+|+|=. |....+..+++..+.+..+++. ++...++++|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~-----p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l 75 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLA-----PEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVL 75 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---T-----TTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccc-----ccccccccccccccceeeeccccccccccccceEE
Confidence 78999986 344455666666665 6999999999832 1111223344444444444444 2222279999
Q ss_pred EEeChHHHHHHHHHHhccc----cccceeeeccCCCC
Q 038482 85 VGHDSGTYMACFLCSFRAN----RIKALVNLSVVFNP 117 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~~ 117 (234)
+|+|-||.+++.++.+..+ .++++++++|....
T Consensus 76 ~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 76 IGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred eecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 9999999999999976444 38899999985533
No 115
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.12 E-value=8.4e-10 Score=89.13 Aligned_cols=109 Identities=24% Similarity=0.299 Sum_probs=85.4
Q ss_pred CCCceEEEecCCCCcchhhHHH------HHHHHhcCCeEEeecCCCCCCCCcccc--------cccccHHHHH-HHHHHH
Q 038482 7 GQGPEILFLYGFPELRYSRCHQ------TIALASLSYRAVAPDLRGFGDTDELLE--------MTSYTCFHVI-GDLIGL 71 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~------~~~l~~~g~~v~~~D~~G~G~S~~~~~--------~~~~~~~~~a-~dl~~~ 71 (234)
+++|+|+|.||+..++..|-.. +-.|+++||+|+.-..||--.|.+... -...|+++++ .||-+.
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~ 150 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAM 150 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHH
Confidence 5679999999999999999533 455788899999999999877776441 1235676654 355555
Q ss_pred HHhc----CCCCCcEEEEEeChHHHHHHHHHHhccc---cccceeeeccCCCC
Q 038482 72 IDLV----APNDEKVFVVGHDSGTYMACFLCSFRAN---RIKALVNLSVVFNP 117 (234)
Q Consensus 72 ~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~ 117 (234)
++.. +. ++++.+|||.|+.+.+..+...|+ +|+.+++++|....
T Consensus 151 IdyIL~~T~~--~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 151 IDYILEKTGQ--EKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred HHHHHHhccc--cceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 5543 55 899999999999999988887765 79999999998855
No 116
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.11 E-value=2.9e-10 Score=87.77 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred CceEEEecCCCCcc---hhhHHHHHHHHhcCCeEEeecCC----CCCCCCcccccccccHHHHHHHHHHHHHhc------
Q 038482 9 GPEILFLYGFPELR---YSRCHQTIALASLSYRAVAPDLR----GFGDTDELLEMTSYTCFHVIGDLIGLIDLV------ 75 (234)
Q Consensus 9 ~~~lv~ihG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~----G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~------ 75 (234)
...||||.|++..- .....+++.|.+.+|.++-+-++ |+|.+ +++.=++||.++++.+
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~---------SL~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTS---------SLDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcc---------hhhhHHHHHHHHHHHHHHhhcc
Confidence 45899999997633 34577888897778999998754 44433 5555666666666543
Q ss_pred --CCCCCcEEEEEeChHHHHHHHHHHhc-c----ccccceeeeccCCCC
Q 038482 76 --APNDEKVFVVGHDSGTYMACFLCSFR-A----NRIKALVNLSVVFNP 117 (234)
Q Consensus 76 --~~~~~~~~l~GhS~Gg~ia~~~a~~~-p----~~v~~lvl~~~~~~~ 117 (234)
+- ++++|+|||.|..-++.|+... + ..|.++|+-+|....
T Consensus 104 ~~~~--~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDR 150 (303)
T PF08538_consen 104 HFGR--EKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDR 150 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---T
T ss_pred ccCC--ccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCCh
Confidence 23 7999999999999999999764 2 579999999986654
No 117
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.11 E-value=4.1e-10 Score=84.07 Aligned_cols=107 Identities=26% Similarity=0.214 Sum_probs=79.0
Q ss_pred cCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccccc-ccccHHHHHHHHHHHHHhc-------CC
Q 038482 6 KGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEM-TSYTCFHVIGDLIGLIDLV-------AP 77 (234)
Q Consensus 6 ~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~-~~~~~~~~a~dl~~~~~~~-------~~ 77 (234)
.|.=|.|+|+||+.-..+.|..+.+.++.+||-|+++++-.-- .+... +..+....++++..-++++ .+
T Consensus 43 ~G~yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~---~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl 119 (307)
T PF07224_consen 43 AGTYPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLF---PPDGQDEIKSAASVINWLPEGLQHVLPENVEANL 119 (307)
T ss_pred CCCccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhccc---CCCchHHHHHHHHHHHHHHhhhhhhCCCCccccc
Confidence 3455899999999999999999999999999999999986421 12211 2234444555555554443 23
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccc--cccceeeeccCCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRAN--RIKALVNLSVVFNP 117 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~ 117 (234)
.++.++|||.||-.|..+|+.+.. .+.+||-++|....
T Consensus 120 --~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 120 --SKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred --ceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 699999999999999999998743 47788888876544
No 118
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.05 E-value=2.2e-09 Score=82.04 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=71.4
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHH-hcCC--eEEeec--CCCC----CCCC---ccc------cccc-ccHHHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALA-SLSY--RAVAPD--LRGF----GDTD---ELL------EMTS-YTCFHVIGDL 68 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~-~~g~--~v~~~D--~~G~----G~S~---~~~------~~~~-~~~~~~a~dl 68 (234)
+..|.|||||++++...+..+++.+. +.|. .++.++ .-|. |.=+ +.+ .... .++...++.+
T Consensus 10 ~~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp S-EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CCCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 35699999999999999999999997 5542 343332 2221 2111 111 1112 3677888888
Q ss_pred HHHHHhc----CCCCCcEEEEEeChHHHHHHHHHHhccc-----cccceeeeccCCCC
Q 038482 69 IGLIDLV----APNDEKVFVVGHDSGTYMACFLCSFRAN-----RIKALVNLSVVFNP 117 (234)
Q Consensus 69 ~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~~ 117 (234)
..++..| ++ +++.+|||||||..++.|+..+.. .+.++|.|++++..
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng 145 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNG 145 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTT
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCc
Confidence 8888665 78 899999999999999999887532 48999999987765
No 119
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.99 E-value=2e-09 Score=77.49 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=103.6
Q ss_pred CCceEEEecCCC---CcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHH----HhcCCCCC
Q 038482 8 QGPEILFLYGFP---ELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLI----DLVAPNDE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~---~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~----~~~~~~~~ 80 (234)
+.|.+|||||.- ++..+=...+.-+.+.||+|... ||+.+.+. .+++....+....+ +..... +
T Consensus 66 ~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasv---gY~l~~q~-----htL~qt~~~~~~gv~filk~~~n~-k 136 (270)
T KOG4627|consen 66 QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASV---GYNLCPQV-----HTLEQTMTQFTHGVNFILKYTENT-K 136 (270)
T ss_pred CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEe---ccCcCccc-----ccHHHHHHHHHHHHHHHHHhcccc-e
Confidence 358899999972 33333334455555668999998 46666443 35555555554444 333331 5
Q ss_pred cEEEEEeChHHHHHHHHHHh-ccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhc
Q 038482 81 KVFVVGHDSGTYMACFLCSF-RANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKG 159 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~-~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (234)
.+.+-|||.|+.+++....| +..||.+++++++.... +.+... . +. ..
T Consensus 137 ~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l----------~EL~~t---e-~g---~d-------------- 185 (270)
T KOG4627|consen 137 VLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL----------RELSNT---E-SG---ND-------------- 185 (270)
T ss_pred eEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH----------HHHhCC---c-cc---cc--------------
Confidence 67777999999999887765 56689999999875532 111111 0 00 00
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccccC
Q 038482 160 YGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFINQE 233 (234)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~~e 233 (234)
+. ++.+..+.-.-.+.....++.| +++.|++|.-- .+.+.....++ .+..+++.+|+-.+|
T Consensus 186 lg------------Lt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a-~~~~f~n~~hy~I~~ 251 (270)
T KOG4627|consen 186 LG------------LTERNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKA-SFTLFKNYDHYDIIE 251 (270)
T ss_pred cC------------cccchhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhc-ceeecCCcchhhHHH
Confidence 00 1111111111111111117888 88999998653 56777777888 999999999986554
No 120
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.96 E-value=1.2e-08 Score=76.25 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=72.5
Q ss_pred CceEEEecCCCCcchhhHHH--HHHHHh-cCCeEEeecCCCCCCCCc------cc-ccccccHHHHHHHHHHHHHhcCCC
Q 038482 9 GPEILFLYGFPELRYSRCHQ--TIALAS-LSYRAVAPDLRGFGDTDE------LL-EMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~--~~~l~~-~g~~v~~~D~~G~G~S~~------~~-~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
-|.||++||.+++...+... ...|++ +||-|+.|+......... .. ....-....++..+..+.....+.
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 47889999999999877543 344555 478788887532111100 00 001112223334444455566665
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+.++.+.|+|.||+++..++..+|+++.++.+.++.+..
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~ 134 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYG 134 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccc
Confidence 589999999999999999999999999998888876544
No 121
>PRK04940 hypothetical protein; Provisional
Probab=98.94 E-value=3.6e-08 Score=70.79 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=86.9
Q ss_pred EEEecCCCCcchh--hHHH-HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC--CCcEEEEE
Q 038482 12 ILFLYGFPELRYS--RCHQ-TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN--DEKVFVVG 86 (234)
Q Consensus 12 lv~ihG~~~~~~~--~~~~-~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~--~~~~~l~G 86 (234)
|+++||+.+|... .... ...+ .-+.+++ +++ ..+..+-.+.+++.+..+... .+++.|||
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~------------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liG 66 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYS------------TLHPKHDMQHLLKEVDKMLQLSDDERPLICG 66 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECC------------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEE
Confidence 7899999998776 4222 1122 1123333 221 022233333445554432110 15799999
Q ss_pred eChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCCCCC
Q 038482 87 HDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPPDA 166 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (234)
.|+||+.|..++.++. + +.|+++|...| ...+....+.. .
T Consensus 67 SSLGGyyA~~La~~~g--~-~aVLiNPAv~P---------~~~L~~~ig~~---~------------------------- 106 (180)
T PRK04940 67 VGLGGYWAERIGFLCG--I-RQVIFNPNLFP---------EENMEGKIDRP---E------------------------- 106 (180)
T ss_pred eChHHHHHHHHHHHHC--C-CEEEECCCCCh---------HHHHHHHhCCC---c-------------------------
Confidence 9999999999998875 3 77889998876 33333332210 0
Q ss_pred CCCCCCCCchhHHHHHHhhhcccCCcccc---eEeecCCcccc-ccccccCCCCCceeEEeCCCCCcc
Q 038482 167 IIALPGWLSDEDIKYFTTKFDKNALLKES---TITKGVKEYIH-KGEFRSDVPLLEEVTIMEGVGHFI 230 (234)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P---lli~G~~D~~~-~~~~~~~~~~~~~~~~~~~agH~~ 230 (234)
. ...++++-++... ++.| +++..+.|.+. .++..+.+.++.+..+.+|..|-.
T Consensus 107 --~-y~~~~~~h~~eL~--------~~~p~r~~vllq~gDEvLDyr~a~~~y~~~y~~~v~~GGdH~f 163 (180)
T PRK04940 107 --E-YADIATKCVTNFR--------EKNRDRCLVILSRNDEVLDSQRTAEELHPYYEIVWDEEQTHKF 163 (180)
T ss_pred --c-hhhhhHHHHHHhh--------hcCcccEEEEEeCCCcccCHHHHHHHhccCceEEEECCCCCCC
Confidence 0 0012322222221 3555 77899999987 555665555543788888888853
No 122
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.93 E-value=1.8e-09 Score=85.84 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCceEEEecCCCCcc--hhh-HHHHHHHHh---cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh----cCC
Q 038482 8 QGPEILFLYGFPELR--YSR-CHQTIALAS---LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL----VAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~--~~~-~~~~~~l~~---~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~----~~~ 77 (234)
+.|++|+||||.++. ..| ..+.++|.+ .+++|+++|+...- +..... ...+....++.+..+++. .+.
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a-~~~Y~~-a~~n~~~vg~~la~~l~~L~~~~g~ 147 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA-SNNYPQ-AVANTRLVGRQLAKFLSFLINNFGV 147 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH-SS-HHH-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc-cccccc-hhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 468999999998877 355 455565544 36999999985321 111110 111233344444444433 333
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccc--cccceeeeccCCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRAN--RIKALVNLSVVFNP 117 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~ 117 (234)
..++++|||||+||.||-.++.+... ++.+++-++|+...
T Consensus 148 ~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~ 189 (331)
T PF00151_consen 148 PPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPL 189 (331)
T ss_dssp -GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TT
T ss_pred ChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccccc
Confidence 33899999999999999998887766 89999999987754
No 123
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.93 E-value=1.1e-08 Score=76.30 Aligned_cols=95 Identities=19% Similarity=0.118 Sum_probs=73.6
Q ss_pred EecCCC--CcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-cCCCCCcEEEEEeChH
Q 038482 14 FLYGFP--ELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-VAPNDEKVFVVGHDSG 90 (234)
Q Consensus 14 ~ihG~~--~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~~~~~~~~~l~GhS~G 90 (234)
++|+.+ ++...|..+...|... +.++.+|++|++.+.... .+++++++.+.+.+.. ... .+++++|||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~~~--~~~~l~g~s~G 74 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRGR-RDVSALPLPGFGPGEPLP----ASADALVEAQAEAVLRAAGG--RPFVLVGHSSG 74 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCCC-ccEEEecCCCCCCCCCCC----CCHHHHHHHHHHHHHHhcCC--CCeEEEEECHH
Confidence 456654 6778899999999885 999999999998765533 4677777776655544 345 78999999999
Q ss_pred HHHHHHHHHh---ccccccceeeeccCC
Q 038482 91 TYMACFLCSF---RANRIKALVNLSVVF 115 (234)
Q Consensus 91 g~ia~~~a~~---~p~~v~~lvl~~~~~ 115 (234)
|.++..++.+ .++.+.+++++++..
T Consensus 75 g~~a~~~a~~l~~~~~~~~~l~~~~~~~ 102 (212)
T smart00824 75 GLLAHAVAARLEARGIPPAAVVLLDTYP 102 (212)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEccCC
Confidence 9999999876 356788998887644
No 124
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.91 E-value=4.5e-09 Score=85.31 Aligned_cols=106 Identities=22% Similarity=0.177 Sum_probs=61.0
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCC------Cccc-ccc---------------------cc-
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDT------DELL-EMT---------------------SY- 59 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S------~~~~-~~~---------------------~~- 59 (234)
-|+|||-||++++...|..++.+|+.+||=|+++|.|..-.+ ++.. ... .+
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEEFE 179 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGHHH
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhHHH
Confidence 489999999999999999999999999999999999953211 0100 000 00
Q ss_pred ----cHHHHHHHHHHHHHhc--------------------------CCCCCcEEEEEeChHHHHHHHHHHhcccccccee
Q 038482 60 ----TCFHVIGDLIGLIDLV--------------------------APNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109 (234)
Q Consensus 60 ----~~~~~a~dl~~~~~~~--------------------------~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lv 109 (234)
-++.-+.++..+++.+ .. .++.++|||+||+.++..+.+- .+++..|
T Consensus 180 ~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~--~~i~~~GHSFGGATa~~~l~~d-~r~~~~I 256 (379)
T PF03403_consen 180 LRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDL--SRIGLAGHSFGGATALQALRQD-TRFKAGI 256 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEE--EEEEEEEETHHHHHHHHHHHH--TT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcch--hheeeeecCchHHHHHHHHhhc-cCcceEE
Confidence 0001122233233222 12 5799999999999999877654 7899999
Q ss_pred eeccCCCC
Q 038482 110 NLSVVFNP 117 (234)
Q Consensus 110 l~~~~~~~ 117 (234)
++++...|
T Consensus 257 ~LD~W~~P 264 (379)
T PF03403_consen 257 LLDPWMFP 264 (379)
T ss_dssp EES---TT
T ss_pred EeCCcccC
Confidence 99998765
No 125
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=4.3e-09 Score=79.01 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCc----cc-c--------------cccccHHHHHHH
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDE----LL-E--------------MTSYTCFHVIGD 67 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~----~~-~--------------~~~~~~~~~a~d 67 (234)
|.-|.||-.||++++...|.++...-.. ||.|+..|.||.|.|+. +. + .+.|=+.....|
T Consensus 81 ~~~P~vV~fhGY~g~~g~~~~~l~wa~~-Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D 159 (321)
T COG3458 81 GKLPAVVQFHGYGGRGGEWHDMLHWAVA-GYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLD 159 (321)
T ss_pred CccceEEEEeeccCCCCCcccccccccc-ceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHH
Confidence 4458999999999999999887765555 89999999999998843 11 1 122333344445
Q ss_pred HHHHHHhc------CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 68 LIGLIDLV------APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 68 l~~~~~~~------~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
+..+++.+ .- +++.+.|.|.||.+++..++..| ++++++.+=|..
T Consensus 160 ~~~ave~~~sl~~vde--~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl 210 (321)
T COG3458 160 AVRAVEILASLDEVDE--ERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFL 210 (321)
T ss_pred HHHHHHHHhccCccch--hheEEeccccCchhhhhhhhcCh-hhhccccccccc
Confidence 44444433 33 78999999999999998888655 688888766543
No 126
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.90 E-value=6.4e-09 Score=81.91 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=67.4
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCC--CCCCccccc----ccccHHHHHHHHHHHHHhc------C
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGF--GDTDELLEM----TSYTCFHVIGDLIGLIDLV------A 76 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--G~S~~~~~~----~~~~~~~~a~dl~~~~~~~------~ 76 (234)
-|.||+-||.+++...|..+++.+++.||-|.++|.+|. |........ .+.-+.+-..|+..+++.+ .
T Consensus 71 ~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP 150 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASP 150 (365)
T ss_pred CCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCc
Confidence 488999999999999999999999999999999999993 333332211 1112334444544444332 1
Q ss_pred -CC----CCcEEEEEeChHHHHHHHHHHhccc
Q 038482 77 -PN----DEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 77 -~~----~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
+. ..++.++|||+||+.+++++.-..+
T Consensus 151 ~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 151 ALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred ccccccCccceEEEecccccHHHHHhcccccc
Confidence 11 2689999999999999999865443
No 127
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.89 E-value=2.7e-08 Score=70.14 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=66.1
Q ss_pred ceEEEecCCCCcch-hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRY-SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~-~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
+.+|++||+.+|.. .|...-+ .+. -.+-.+++. +.+...++++++.+...+... . ++++||+||
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we--~~l-~~a~rveq~---------~w~~P~~~dWi~~l~~~v~a~-~--~~~vlVAHS 67 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWE--SAL-PNARRVEQD---------DWEAPVLDDWIARLEKEVNAA-E--GPVVLVAHS 67 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHH--hhC-ccchhcccC---------CCCCCCHHHHHHHHHHHHhcc-C--CCeEEEEec
Confidence 57899999988763 4544322 121 112222221 124568888998888888776 3 679999999
Q ss_pred hHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 89 SGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+|+..++.++.+....|+++.+++++-..
T Consensus 68 LGc~~v~h~~~~~~~~V~GalLVAppd~~ 96 (181)
T COG3545 68 LGCATVAHWAEHIQRQVAGALLVAPPDVS 96 (181)
T ss_pred ccHHHHHHHHHhhhhccceEEEecCCCcc
Confidence 99999999998877789999999975543
No 128
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.88 E-value=3e-09 Score=79.76 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc-CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 64 VIGDLIGLIDLV-APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 64 ~a~dl~~~~~~~-~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+.+...+++... ...++++.|+|.|.||-+|+.+|.++| .|+++|.++++...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 455566666554 232368999999999999999999999 69999999987765
No 129
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.86 E-value=6.2e-08 Score=77.15 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=70.3
Q ss_pred CCceEEEecCCC---CcchhhHHH-HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh---cCCCCC
Q 038482 8 QGPEILFLYGFP---ELRYSRCHQ-TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL---VAPNDE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~---~~~~~~~~~-~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~---~~~~~~ 80 (234)
..|+||++||.+ ++....+.+ ...+...|+.|+.+|+|=--.-. .+..+++..+.+..+.+. ++..++
T Consensus 78 ~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~-----~p~~~~d~~~a~~~l~~~~~~~g~dp~ 152 (312)
T COG0657 78 TAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHP-----FPAALEDAYAAYRWLRANAAELGIDPS 152 (312)
T ss_pred CCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCC-----CCchHHHHHHHHHHHHhhhHhhCCCcc
Confidence 368999999996 444555344 44455569999999998432221 333555544434333333 444458
Q ss_pred cEEEEEeChHHHHHHHHHHhccc----cccceeeeccCCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRAN----RIKALVNLSVVFNP 117 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~~ 117 (234)
++.|+|+|-||.+++.++..-.+ ...+.+++.+....
T Consensus 153 ~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~ 193 (312)
T COG0657 153 RIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDL 193 (312)
T ss_pred ceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCC
Confidence 99999999999999999876443 46788888876655
No 130
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.84 E-value=8.3e-08 Score=84.58 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=65.8
Q ss_pred HHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC------------------CCCcEEEEEeCh
Q 038482 28 QTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP------------------NDEKVFVVGHDS 89 (234)
Q Consensus 28 ~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~------------------~~~~~~l~GhS~ 89 (234)
..+.|.++||.|+..|.||.|.|.+... ... .+..+|..++|+-+.- .+.++.++|.|+
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~--~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY 347 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT--TGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSY 347 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc--cCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcH
Confidence 4577888899999999999999998652 222 3455566666655531 037999999999
Q ss_pred HHHHHHHHHHhccccccceeeeccCC
Q 038482 90 GTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 90 Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
||.+++.+|...|..++++|.+++..
T Consensus 348 ~G~~~~~aAa~~pp~LkAIVp~a~is 373 (767)
T PRK05371 348 LGTLPNAVATTGVEGLETIIPEAAIS 373 (767)
T ss_pred HHHHHHHHHhhCCCcceEEEeeCCCC
Confidence 99999999999898899999876543
No 131
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.84 E-value=1.2e-08 Score=79.56 Aligned_cols=107 Identities=20% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCceEEEecCCCCcc-hhhHHH---------HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc--
Q 038482 8 QGPEILFLYGFPELR-YSRCHQ---------TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV-- 75 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~-~~~~~~---------~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~-- 75 (234)
+-|+||..++++.+. ...... ...|.++||.|+..|.||.|.|....... ....++|..++|+-+
T Consensus 19 ~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~---~~~e~~D~~d~I~W~~~ 95 (272)
T PF02129_consen 19 PFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM---SPNEAQDGYDTIEWIAA 95 (272)
T ss_dssp SEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT---SHHHHHHHHHHHHHHHH
T ss_pred cccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC---ChhHHHHHHHHHHHHHh
Confidence 348999999999654 112111 11288889999999999999999977321 445566666555544
Q ss_pred -CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 76 -APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 76 -~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
.-.+.+|-++|.|++|..++.+|++.|..+++++...+....
T Consensus 96 Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~ 138 (272)
T PF02129_consen 96 QPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDL 138 (272)
T ss_dssp CTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBT
T ss_pred CCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcc
Confidence 332468999999999999999999888899999988775554
No 132
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.79 E-value=4.6e-08 Score=77.69 Aligned_cols=106 Identities=27% Similarity=0.408 Sum_probs=61.4
Q ss_pred CCCceEEEecCCCCcchh--------------h----HHHHHHHHhcCCeEEeecCCCCCCCCccccc---ccccHHHHH
Q 038482 7 GQGPEILFLYGFPELRYS--------------R----CHQTIALASLSYRAVAPDLRGFGDTDELLEM---TSYTCFHVI 65 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~--------------~----~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~---~~~~~~~~a 65 (234)
|+-|+||++||=++.... + .....+|.++||-|+++|.+|+|........ ..++...++
T Consensus 113 ~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la 192 (390)
T PF12715_consen 113 GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALA 192 (390)
T ss_dssp S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHH
T ss_pred CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHH
Confidence 345899999998765432 1 1347789999999999999999987654411 112222222
Q ss_pred ---------------HHHHHHHHhcCCC----CCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 66 ---------------GDLIGLIDLVAPN----DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 66 ---------------~dl~~~~~~~~~~----~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
-|....+|.+.-. ++++.++|+||||..++.+++. .+||++.|..+-
T Consensus 193 ~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-DdRIka~v~~~~ 258 (390)
T PF12715_consen 193 RNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DDRIKATVANGY 258 (390)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--TT--EEEEES-
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-chhhHhHhhhhh
Confidence 2222334444221 3789999999999999999886 467887776653
No 133
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.78 E-value=6.2e-08 Score=73.59 Aligned_cols=108 Identities=9% Similarity=0.051 Sum_probs=69.2
Q ss_pred CCCceEEEecCCCCcchhhHHHHHHHHh-cC--CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCC
Q 038482 7 GQGPEILFLYGFPELRYSRCHQTIALAS-LS--YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APND 79 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~~~~~~l~~-~g--~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~ 79 (234)
.++..+|||||+..+-..-..-+..+.. .+ -.++.+.+|..|.-..... +..+...-+..+.++++.+ +.
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~-d~~~a~~s~~~l~~~L~~L~~~~~~-- 92 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFY-DRESARFSGPALARFLRDLARAPGI-- 92 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhh-hhhhHHHHHHHHHHHHHHHHhccCC--
Confidence 3567999999999875543222222222 12 3799999999886433221 2223344455555555544 45
Q ss_pred CcEEEEEeChHHHHHHHHHHh----cc-----ccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSF----RA-----NRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~----~p-----~~v~~lvl~~~~~~~ 117 (234)
+++++++||||+.+.+..... .+ .++..+|+++|....
T Consensus 93 ~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 93 KRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred ceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 899999999999999887643 11 257788888876643
No 134
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.75 E-value=3e-08 Score=79.39 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=79.0
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCe---EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYR---AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~---v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
-++|++||+..+...|.++...+...|+. ++.+++++- ....+ ....-+.+..-+.+++...+. +++.|+|
T Consensus 60 ~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~---~~~~~~ql~~~V~~~l~~~ga--~~v~Lig 133 (336)
T COG1075 60 EPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGG-DGTYS---LAVRGEQLFAYVDEVLAKTGA--KKVNLIG 133 (336)
T ss_pred ceEEEEccCcCCcchhhhhhhhhcchHHHhccccccccccc-CCCcc---ccccHHHHHHHHHHHHhhcCC--CceEEEe
Confidence 39999999988989999988888777776 888888765 11111 123445555556666667777 8999999
Q ss_pred eChHHHHHHHHHHhcc--ccccceeeeccCCCC
Q 038482 87 HDSGTYMACFLCSFRA--NRIKALVNLSVVFNP 117 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~~ 117 (234)
|||||.++..++...+ .+|+.++-++++-..
T Consensus 134 HS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~G 166 (336)
T COG1075 134 HSMGGLDSRYYLGVLGGANRVASVVTLGTPHHG 166 (336)
T ss_pred ecccchhhHHHHhhcCccceEEEEEEeccCCCC
Confidence 9999999999988877 899999999976654
No 135
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.71 E-value=4.7e-08 Score=73.59 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=51.7
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhc--CCeEEeecCCCCCCCCcccccccccHHHHHHHH----HHHHHhcCCCCCcE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASL--SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL----IGLIDLVAPNDEKV 82 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl----~~~~~~~~~~~~~~ 82 (234)
...|||+||+.++..+|..+.+.+... .+.--.+...++-..... ....++..++.+ .+.++.......++
T Consensus 4 ~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~---T~~gI~~~g~rL~~eI~~~~~~~~~~~~~I 80 (217)
T PF05057_consen 4 VHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFK---TFDGIDVCGERLAEEILEHIKDYESKIRKI 80 (217)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhcccccccc---cchhhHHHHHHHHHHHHHhccccccccccc
Confidence 357999999999999998887777661 122112222222211111 123455555554 34333333311489
Q ss_pred EEEEeChHHHHHHHHHH
Q 038482 83 FVVGHDSGTYMACFLCS 99 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~ 99 (234)
.+|||||||.++-.+..
T Consensus 81 sfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 81 SFIGHSLGGLIARYALG 97 (217)
T ss_pred eEEEecccHHHHHHHHH
Confidence 99999999999865554
No 136
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.69 E-value=8.6e-08 Score=69.06 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=77.0
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCCcEEEE
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDEKVFVV 85 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~~~~l~ 85 (234)
..+||+-|=++....=..++++|+++|+.|+.+|-+-|=.+.++ .++.+.|+.++++.. +. ++++|+
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rt-------P~~~a~Dl~~~i~~y~~~w~~--~~vvLi 73 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSERT-------PEQTAADLARIIRHYRARWGR--KRVVLI 73 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhCC-------HHHHHHHHHHHHHHHHHHhCC--ceEEEE
Confidence 35788999888876667889999999999999996655555444 466777777777654 56 899999
Q ss_pred EeChHHHHHHHHHHhccc----cccceeeeccCC
Q 038482 86 GHDSGTYMACFLCSFRAN----RIKALVNLSVVF 115 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~----~v~~lvl~~~~~ 115 (234)
|.|+|+-+.-....+.|. +|+.++++++..
T Consensus 74 GYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 74 GYSFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred eecCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 999999888777777764 688899998755
No 137
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.69 E-value=4.1e-07 Score=66.66 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=96.9
Q ss_pred CCceEEEecCCCCcchhhHH----HHHHHHhcCCeEEeecCCC-C---C--CCCc-------cc-----------c----
Q 038482 8 QGPEILFLYGFPELRYSRCH----QTIALASLSYRAVAPDLRG-F---G--DTDE-------LL-----------E---- 55 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~----~~~~l~~~g~~v~~~D~~G-~---G--~S~~-------~~-----------~---- 55 (234)
..+-|||+||+-.+...|.. +.+.+.+. +.++.+|-|. . + .+.+ +. +
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 35789999999999998864 44556665 8888888773 0 0 0100 10 0
Q ss_pred cccccHHHHHHHHHHHHHhcCCCCCcE-EEEEeChHHHHHHHHHHhccc--------cccceeeeccCCCCCCCCCchhH
Q 038482 56 MTSYTCFHVIGDLIGLIDLVAPNDEKV-FVVGHDSGTYMACFLCSFRAN--------RIKALVNLSVVFNPNTSVSNSNW 126 (234)
Q Consensus 56 ~~~~~~~~~a~dl~~~~~~~~~~~~~~-~l~GhS~Gg~ia~~~a~~~p~--------~v~~lvl~~~~~~~~~~~~~~~~ 126 (234)
.....+++-.+.+.+.++..|. + -|+|+|.|+.++-.++...+. .++-+|++++.-...
T Consensus 83 ~~~~~~eesl~yl~~~i~enGP----FDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~-------- 150 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKENGP----FDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS-------- 150 (230)
T ss_pred ccccChHHHHHHHHHHHHHhCC----CccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc--------
Confidence 0112445556677777766654 5 789999999999888862111 134444444322110
Q ss_pred HHHhhhhcCcccccccccCcchHHHHHHhhhhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCccc
Q 038482 127 IKALGAYYGDDYYIGGIHEPGEIEAQFEQISKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYI 205 (234)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~ 205 (234)
.... ...+... |++| |-|.|+.|.+
T Consensus 151 ---------------------------------------------~~~~-------~~~~~~~--i~~PSLHi~G~~D~i 176 (230)
T KOG2551|consen 151 ---------------------------------------------KKLD-------ESAYKRP--LSTPSLHIFGETDTI 176 (230)
T ss_pred ---------------------------------------------chhh-------hhhhccC--CCCCeeEEeccccee
Confidence 0000 0001111 8999 6699999999
Q ss_pred c----ccccccCCCCCceeEEeCCCCCcccc
Q 038482 206 H----KGEFRSDVPLLEEVTIMEGVGHFINQ 232 (234)
Q Consensus 206 ~----~~~~~~~~~~~~~~~~~~~agH~~~~ 232 (234)
+ ...+.+.++++ .+..-+| ||+++.
T Consensus 177 v~~~~s~~L~~~~~~a-~vl~Hpg-gH~VP~ 205 (230)
T KOG2551|consen 177 VPSERSEQLAESFKDA-TVLEHPG-GHIVPN 205 (230)
T ss_pred ecchHHHHHHHhcCCC-eEEecCC-CccCCC
Confidence 8 46788889999 7776665 999875
No 138
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2e-07 Score=77.80 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=76.7
Q ss_pred ceEEEecCCCCcchhhHHH-------HHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcC
Q 038482 10 PEILFLYGFPELRYSRCHQ-------TIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~-------~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
|+++++-|.++-..+...+ ...|+..||-|+.+|-||.-.....- ......++|+++-+.-+.++.|
T Consensus 643 ptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~g 722 (867)
T KOG2281|consen 643 PTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTG 722 (867)
T ss_pred ceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcC
Confidence 7999999998744433222 35678889999999999865443322 2345678899999988888875
Q ss_pred CC-CCcEEEEEeChHHHHHHHHHHhccccccceee
Q 038482 77 PN-DEKVFVVGHDSGTYMACFLCSFRANRIKALVN 110 (234)
Q Consensus 77 ~~-~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl 110 (234)
.. -.++.+-|||.||++++...+++|+.++..|.
T Consensus 723 fidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIA 757 (867)
T KOG2281|consen 723 FIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIA 757 (867)
T ss_pred cccchheeEeccccccHHHHHHhhcCcceeeEEec
Confidence 43 27899999999999999999999997765553
No 139
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=7.4e-07 Score=66.36 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=86.1
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhc-C--CeEEeecCCCCCCCC---ccc----ccccccHHHHHHHHHHHHHhcCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASL-S--YRAVAPDLRGFGDTD---ELL----EMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~-g--~~v~~~D~~G~G~S~---~~~----~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
+++-+++|+|.+|....|.+++..|... + .++|.+-..||-.-. +.. ..+-++++++++--.++++..-.
T Consensus 28 ~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~P 107 (301)
T KOG3975|consen 28 DKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYVP 107 (301)
T ss_pred CceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhCC
Confidence 4578899999999999999999998764 2 458998888877544 111 22567999999999999998877
Q ss_pred CCCcEEEEEeChHHHHHHHHHHh-cc-ccccceeeeccCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSF-RA-NRIKALVNLSVVFN 116 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~-~p-~~v~~lvl~~~~~~ 116 (234)
++.+++++|||.|+++.+..... .+ -+|.+++++-|...
T Consensus 108 k~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIe 148 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIE 148 (301)
T ss_pred CCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHH
Confidence 66899999999999999999863 22 25888888877554
No 140
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.9e-07 Score=79.62 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=76.0
Q ss_pred ceEEEecCCCCcch-------hhHHHHHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcC
Q 038482 10 PEILFLYGFPELRY-------SRCHQTIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 10 ~~lv~ihG~~~~~~-------~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
|.||.+||.+++.. .|... .....|+-|+.+|.||.|.....- +......+|+...+..+++..-
T Consensus 527 Pllv~~yGGP~sq~v~~~~~~~~~~~--~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~ 604 (755)
T KOG2100|consen 527 PLLVVVYGGPGSQSVTSKFSVDWNEV--VVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPF 604 (755)
T ss_pred CEEEEecCCCCcceeeeeEEecHHHH--hhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhccc
Confidence 67788999987332 23333 355668999999999988654432 2345577777777777777654
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccce-eeeccCCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKAL-VNLSVVFN 116 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~l-vl~~~~~~ 116 (234)
+..+++.++|+|.||++++.++...|+.+.+. +.++|...
T Consensus 605 iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd 645 (755)
T KOG2100|consen 605 IDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTD 645 (755)
T ss_pred ccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceee
Confidence 43478999999999999999999988665555 87887654
No 141
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.62 E-value=4.5e-07 Score=65.90 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=72.7
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcc---------------c-ccccccHHHHHHHHHHHHH
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDEL---------------L-EMTSYTCFHVIGDLIGLID 73 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~---------------~-~~~~~~~~~~a~dl~~~~~ 73 (234)
.+||++||++.++..|..+++.|.-.+.+.|+|..|-.-.+.-. + ..+...+...++.+..+++
T Consensus 4 atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~ 83 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLID 83 (206)
T ss_pred EEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHH
Confidence 48999999999999999998887766778888754432111100 0 0123455666677777776
Q ss_pred hc---CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 74 LV---APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 74 ~~---~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
+. ++...++.+-|.||||+++++.+..+|..+.+.+-..+
T Consensus 84 ~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~ 126 (206)
T KOG2112|consen 84 NEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSG 126 (206)
T ss_pred HHHHcCCCccceeEcccCchHHHHHHHHhccccccceeecccc
Confidence 55 33225789999999999999999999776666655443
No 142
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.61 E-value=2.9e-07 Score=76.86 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=76.1
Q ss_pred CCceEEEecCCCCcchhhHHHHH------------------HHHhcCCeEEeecCC-CCCCCCcccccccccHHHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTI------------------ALASLSYRAVAPDLR-GFGDTDELLEMTSYTCFHVIGDL 68 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~------------------~l~~~g~~v~~~D~~-G~G~S~~~~~~~~~~~~~~a~dl 68 (234)
+.|.|++++|.++.++++-.+.+ ...+. .+++.+|.| |+|.|.........+.++.++|+
T Consensus 76 ~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~ 154 (462)
T PTZ00472 76 EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGVGFSYADKADYDHNESEVSEDM 154 (462)
T ss_pred CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCcCcccCCCCCCCCChHHHHHHH
Confidence 46899999999998877633211 12232 689999975 88888765422345668889999
Q ss_pred HHHHHhc-----CCCCCcEEEEEeChHHHHHHHHHHhc----c------ccccceeeeccCCCC
Q 038482 69 IGLIDLV-----APNDEKVFVVGHDSGTYMACFLCSFR----A------NRIKALVNLSVVFNP 117 (234)
Q Consensus 69 ~~~~~~~-----~~~~~~~~l~GhS~Gg~ia~~~a~~~----p------~~v~~lvl~~~~~~~ 117 (234)
.++++.. ...+.+++|+|||+||..+..+|.+- . =.++++++-++...+
T Consensus 155 ~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 155 YNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccCh
Confidence 8888743 11127999999999999887777541 1 136788888876654
No 143
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.59 E-value=1.4e-06 Score=69.17 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=77.8
Q ss_pred CceEEEecCCCC-----cchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh----cCCC
Q 038482 9 GPEILFLYGFPE-----LRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL----VAPN 78 (234)
Q Consensus 9 ~~~lv~ihG~~~-----~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~----~~~~ 78 (234)
.|.||++||.|- ....|+.+...+.+. +.-|+.+|+| .+... +.+..++|....+..+.++ .+..
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYR---LAPEh--~~Pa~y~D~~~Al~w~~~~~~~~~~~D 164 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYR---LAPEH--PFPAAYDDGWAALKWVLKNSWLKLGAD 164 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcc---cCCCC--CCCccchHHHHHHHHHHHhHHHHhCCC
Confidence 478999999962 366788888888654 6788888887 33222 2556777777777776664 2332
Q ss_pred CCcEEEEEeChHHHHHHHHHHhc------cccccceeeeccCCCCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFR------ANRIKALVNLSVVFNPNT 119 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~------p~~v~~lvl~~~~~~~~~ 119 (234)
.+++.|+|=|-||.+|..+|.+. +-++++.|++-|......
T Consensus 165 ~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 165 PSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTD 211 (336)
T ss_pred cccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCC
Confidence 37899999999999999998652 346899999998776633
No 144
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.59 E-value=5.4e-07 Score=70.37 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=70.7
Q ss_pred CCceEEEecCCCCcchhh------HHHHHHHH-hcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC----
Q 038482 8 QGPEILFLYGFPELRYSR------CHQTIALA-SLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA---- 76 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~------~~~~~~l~-~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~---- 76 (234)
++.-+|+.-|.++.-+.. +.....++ ..+-+|+.+++||.|.|.++. +.++++.|..+.++.+.
T Consensus 136 ~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~-----s~~dLv~~~~a~v~yL~d~~~ 210 (365)
T PF05677_consen 136 PQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP-----SRKDLVKDYQACVRYLRDEEQ 210 (365)
T ss_pred CCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC-----CHHHHHHHHHHHHHHHHhccc
Confidence 456889998888755541 12233333 347889999999999998876 56888888888877662
Q ss_pred -CCCCcEEEEEeChHHHHHHHHHHhcc----ccccceeeecc
Q 038482 77 -PNDEKVFVVGHDSGTYMACFLCSFRA----NRIKALVNLSV 113 (234)
Q Consensus 77 -~~~~~~~l~GhS~Gg~ia~~~a~~~p----~~v~~lvl~~~ 113 (234)
+..+++++.|||+||.++.+++.++. +.++=+++-+-
T Consensus 211 G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDR 252 (365)
T PF05677_consen 211 GPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDR 252 (365)
T ss_pred CCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecC
Confidence 32378999999999999887655442 23444555543
No 145
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=1.1e-06 Score=67.14 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=76.6
Q ss_pred CceEEEecCCCCcchhhHHHH--HHHHh-cCCeEEeec-CCCC------CCCCccc--ccccccHHHHHHHHHHHHHhcC
Q 038482 9 GPEILFLYGFPELRYSRCHQT--IALAS-LSYRAVAPD-LRGF------GDTDELL--EMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~--~~l~~-~g~~v~~~D-~~G~------G~S~~~~--~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
.|.||++||-.++...++... +.|++ .||-|+.|| ++++ +.+..+. .........+++.+..++.+.+
T Consensus 61 apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~g 140 (312)
T COG3509 61 APLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYG 140 (312)
T ss_pred CCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcC
Confidence 468899999999888766554 55554 489898885 2222 2221222 1122344455556666667778
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
+.+++|++.|.|-||.++..++..+|+.+.++.++++..
T Consensus 141 idp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 141 IDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 855799999999999999999999999999999988766
No 146
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.7e-06 Score=63.40 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=73.8
Q ss_pred ceEEEecCCCCcchh--hHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 10 PEILFLYGFPELRYS--RCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~--~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
.|+|++||++.+... +..+.+.+.+. |..++++|. |-| -+.. .-..+.++++.+.+.+.......+-++++|
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g--~~~s--~l~pl~~Qv~~~ce~v~~m~~lsqGynivg 98 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDG--IKDS--SLMPLWEQVDVACEKVKQMPELSQGYNIVG 98 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCC--cchh--hhccHHHHHHHHHHHHhcchhccCceEEEE
Confidence 699999999987766 77888888776 788999985 555 1111 223556666666666553321125799999
Q ss_pred eChHHHHHHHHHHhccc-cccceeeeccCCCC
Q 038482 87 HDSGTYMACFLCSFRAN-RIKALVNLSVVFNP 117 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~-~v~~lvl~~~~~~~ 117 (234)
.|.||.++-.++...++ .|+.+|-++++-..
T Consensus 99 ~SQGglv~Raliq~cd~ppV~n~ISL~gPhaG 130 (296)
T KOG2541|consen 99 YSQGGLVARALIQFCDNPPVKNFISLGGPHAG 130 (296)
T ss_pred EccccHHHHHHHHhCCCCCcceeEeccCCcCC
Confidence 99999999999987655 58899988876544
No 147
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.51 E-value=1.7e-07 Score=68.71 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=67.7
Q ss_pred ceEEEecCCCCcchh-hHHHHHHHHhcCCeEEeec-CCCCCCCCc-cc-----ccccccHHHHHHHHHHHHHhcCCC--C
Q 038482 10 PEILFLYGFPELRYS-RCHQTIALASLSYRAVAPD-LRGFGDTDE-LL-----EMTSYTCFHVIGDLIGLIDLVAPN--D 79 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~-~~~~~~~l~~~g~~v~~~D-~~G~G~S~~-~~-----~~~~~~~~~~a~dl~~~~~~~~~~--~ 79 (234)
..||++--+.+-... -+..++.++.+||.|++|| ++|--.|.. .. -....+....-+++..+++.+... .
T Consensus 40 ~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~~ 119 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGDS 119 (242)
T ss_pred eEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCCc
Confidence 467777777665544 6778888998899999999 555222221 11 012335555556666666554221 1
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
.++-++|.+|||-++..+....| .+.+.|.+-|
T Consensus 120 kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hp 152 (242)
T KOG3043|consen 120 KKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHP 152 (242)
T ss_pred ceeeEEEEeecceEEEEeeccch-hheeeeEecC
Confidence 78999999999999888877766 5666666554
No 148
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.45 E-value=1.1e-05 Score=66.49 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC---CCcEEEEEeChHHHHHHHHHHhccc
Q 038482 27 HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN---DEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 27 ~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~---~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
.+--+|.. |+.|+.+.+. ..|. ...|+++.+....++++.+... ..+.+|+|.+.||+.++.+|+.+|+
T Consensus 92 evG~AL~~-GHPvYFV~F~-----p~P~--pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd 163 (581)
T PF11339_consen 92 EVGVALRA-GHPVYFVGFF-----PEPE--PGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPD 163 (581)
T ss_pred HHHHHHHc-CCCeEEEEec-----CCCC--CCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcC
Confidence 34455655 8999988643 1111 3468888877777777654211 1489999999999999999999999
Q ss_pred cccceeeeccCCCC
Q 038482 104 RIKALVNLSVVFNP 117 (234)
Q Consensus 104 ~v~~lvl~~~~~~~ 117 (234)
.+.-+|+-+++...
T Consensus 164 ~~gplvlaGaPlsy 177 (581)
T PF11339_consen 164 LVGPLVLAGAPLSY 177 (581)
T ss_pred ccCceeecCCCccc
Confidence 99888887776654
No 149
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.45 E-value=1.9e-06 Score=64.39 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=74.5
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCe------EEeecCCCC----CCCCccc---------ccccccHHHHHHHHHH
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYR------AVAPDLRGF----GDTDELL---------EMTSYTCFHVIGDLIG 70 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~------v~~~D~~G~----G~S~~~~---------~~~~~~~~~~a~dl~~ 70 (234)
-|.+||||.+++......+++.|.+. ++ ++..|--|. |.-++.. .....+..++...+..
T Consensus 46 iPTIfIhGsgG~asS~~~Mv~ql~~~-~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~ 124 (288)
T COG4814 46 IPTIFIHGSGGTASSLNGMVNQLLPD-YKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKK 124 (288)
T ss_pred cceEEEecCCCChhHHHHHHHHhhhc-ccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHH
Confidence 38899999999999999999999876 42 445555551 1111111 0123466777777777
Q ss_pred HHHhc----CCCCCcEEEEEeChHHHHHHHHHHhccc-----cccceeeeccCCC
Q 038482 71 LIDLV----APNDEKVFVVGHDSGTYMACFLCSFRAN-----RIKALVNLSVVFN 116 (234)
Q Consensus 71 ~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~ 116 (234)
++..| ++ .++.++||||||.-...|+..+.. .++++|.++++..
T Consensus 125 ~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 125 AMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 76554 78 899999999999988888876432 3889999998775
No 150
>PLN02606 palmitoyl-protein thioesterase
Probab=98.43 E-value=2.9e-06 Score=65.75 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=71.5
Q ss_pred CCceEEEecCCC--CcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEE
Q 038482 8 QGPEILFLYGFP--ELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFV 84 (234)
Q Consensus 8 ~~~~lv~ihG~~--~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l 84 (234)
+..|||+.||++ +....+..+.+.+.+. |+.+..+. -|-+.. .. .--++.++++.+.+-+........-+++
T Consensus 25 ~~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~~---~s-~~~~~~~Qv~~vce~l~~~~~L~~G~na 99 (306)
T PLN02606 25 LSVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGVQ---DS-LFMPLRQQASIACEKIKQMKELSEGYNI 99 (306)
T ss_pred CCCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCcc---cc-cccCHHHHHHHHHHHHhcchhhcCceEE
Confidence 456999999999 6666788888777533 55555554 232211 10 1235566666666555442111146999
Q ss_pred EEeChHHHHHHHHHHhccc--cccceeeeccCCCC
Q 038482 85 VGHDSGTYMACFLCSFRAN--RIKALVNLSVVFNP 117 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~ 117 (234)
+|+|.||.++-.++.+.|+ .|+.+|-++++-..
T Consensus 100 IGfSQGglflRa~ierc~~~p~V~nlISlggph~G 134 (306)
T PLN02606 100 VAESQGNLVARGLIEFCDNAPPVINYVSLGGPHAG 134 (306)
T ss_pred EEEcchhHHHHHHHHHCCCCCCcceEEEecCCcCC
Confidence 9999999999999999987 49999999986654
No 151
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.42 E-value=3.2e-06 Score=66.50 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC-CCcEEEEEeChHHHHHHHHHHh----c
Q 038482 27 HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN-DEKVFVVGHDSGTYMACFLCSF----R 101 (234)
Q Consensus 27 ~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~-~~~~~l~GhS~Gg~ia~~~a~~----~ 101 (234)
.++..+.++||.|+++|+.|.|..-......-++.-|.++...++....++. +.++.++|||.||.-++..+.. -
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~~YA 96 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAPSYA 96 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhHHhC
Confidence 3456666779999999999998721111111122222233333222222332 3689999999999887665543 2
Q ss_pred ccc---ccceeeeccCCC
Q 038482 102 ANR---IKALVNLSVVFN 116 (234)
Q Consensus 102 p~~---v~~lvl~~~~~~ 116 (234)
||. +.+.+..+++..
T Consensus 97 peL~~~l~Gaa~gg~~~d 114 (290)
T PF03583_consen 97 PELNRDLVGAAAGGPPAD 114 (290)
T ss_pred cccccceeEEeccCCccC
Confidence 443 566666555443
No 152
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.41 E-value=7e-07 Score=68.80 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhc-CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 62 FHVIGDLIGLIDLV-APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 62 ~~~a~dl~~~~~~~-~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+-+.+++...+++. ...+.+..++|+||||..|+.++.++|+.+.+++.+++...+
T Consensus 96 ~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~ 152 (251)
T PF00756_consen 96 TFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP 152 (251)
T ss_dssp HHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred eehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence 34556777777653 432123799999999999999999999999999999976544
No 153
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.40 E-value=2e-06 Score=63.71 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=55.4
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEE-eecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAV-APDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~-~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
+..||+..||+++...+..+. +.+ ++.++ ++|+|.. +++. | --+. +.+.|||+
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~--~~~-~~D~l~~yDYr~l------------~~d~---~------~~~y--~~i~lvAW 64 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLI--LPE-NYDVLICYDYRDL------------DFDF---D------LSGY--REIYLVAW 64 (213)
T ss_pred CeEEEEEecCCCChHHhhhcc--CCC-CccEEEEecCccc------------cccc---c------cccC--ceEEEEEE
Confidence 468999999999999887763 222 35554 5677521 1110 1 1235 79999999
Q ss_pred ChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 88 DSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 88 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|||-++|-.+.... .++..|.+++...|
T Consensus 65 SmGVw~A~~~l~~~--~~~~aiAINGT~~P 92 (213)
T PF04301_consen 65 SMGVWAANRVLQGI--PFKRAIAINGTPYP 92 (213)
T ss_pred eHHHHHHHHHhccC--CcceeEEEECCCCC
Confidence 99999997775543 36777778877766
No 154
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.40 E-value=3.4e-06 Score=69.44 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred CceEEEecCCCCcch-hhHHHHHHHHhcC----CeEEeecCCCCCCCCccc--ccccccHHHHHHHHHHHHHhc-CCC--
Q 038482 9 GPEILFLYGFPELRY-SRCHQTIALASLS----YRAVAPDLRGFGDTDELL--EMTSYTCFHVIGDLIGLIDLV-APN-- 78 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~-~~~~~~~~l~~~g----~~v~~~D~~G~G~S~~~~--~~~~~~~~~~a~dl~~~~~~~-~~~-- 78 (234)
-|.|+|+||-.-... .....++.|.+.| .-++.+|-.+. ..+.. .....-.+.+++++.-.+++. ...
T Consensus 209 ~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~--~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d 286 (411)
T PRK10439 209 RPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDT--THRSQELPCNADFWLAVQQELLPQVRAIAPFSDD 286 (411)
T ss_pred CCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCc--ccccccCCchHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 478899999542111 1223345555544 23567775221 11111 001112344566677767654 221
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
+++.+|+|+||||..++.++.++|+++.+++.++++.
T Consensus 287 ~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 287 ADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred ccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 3678999999999999999999999999999999764
No 155
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.39 E-value=1.7e-06 Score=67.54 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=68.6
Q ss_pred CCCc-eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHH-HHHHHhcCCCCCcEEE
Q 038482 7 GQGP-EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL-IGLIDLVAPNDEKVFV 84 (234)
Q Consensus 7 g~~~-~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl-~~~~~~~~~~~~~~~l 84 (234)
|+|. -|+|.-|..+--+. .++..=.+.||.|+.+++||++.|...+ .+.+-..-++.+ .-.++.++...+.+++
T Consensus 240 ~ngq~LvIC~EGNAGFYEv--G~m~tP~~lgYsvLGwNhPGFagSTG~P--~p~n~~nA~DaVvQfAI~~Lgf~~edIil 315 (517)
T KOG1553|consen 240 GNGQDLVICFEGNAGFYEV--GVMNTPAQLGYSVLGWNHPGFAGSTGLP--YPVNTLNAADAVVQFAIQVLGFRQEDIIL 315 (517)
T ss_pred CCCceEEEEecCCccceEe--eeecChHHhCceeeccCCCCccccCCCC--CcccchHHHHHHHHHHHHHcCCCccceEE
Confidence 3444 56677766553221 1222223448999999999999999877 333222223333 3344666665588999
Q ss_pred EEeChHHHHHHHHHHhccccccceeeecc
Q 038482 85 VGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
.|||.||..+.-+|..+|+ |+++|+-++
T Consensus 316 ygWSIGGF~~~waAs~YPd-VkavvLDAt 343 (517)
T KOG1553|consen 316 YGWSIGGFPVAWAASNYPD-VKAVVLDAT 343 (517)
T ss_pred EEeecCCchHHHHhhcCCC-ceEEEeecc
Confidence 9999999999999999998 888886554
No 156
>COG3150 Predicted esterase [General function prediction only]
Probab=98.31 E-value=2.2e-05 Score=55.10 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred EEEecCCCCcchhhHHH--HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 12 ILFLYGFPELRYSRCHQ--TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~--~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
|+.+||+-+|....... .+.+... .+.+.+ |.+.. .......++.++.++...+. ++..++|-|+
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~-~~~i~y-------~~p~l---~h~p~~a~~ele~~i~~~~~--~~p~ivGssL 68 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED-VRDIEY-------STPHL---PHDPQQALKELEKAVQELGD--ESPLIVGSSL 68 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc-ccceee-------ecCCC---CCCHHHHHHHHHHHHHHcCC--CCceEEeecc
Confidence 79999999988777544 2334333 333322 22222 35778889999999999998 8899999999
Q ss_pred HHHHHHHHHHhccccccceeeeccCCCC
Q 038482 90 GTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 90 Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
||+.|..++.++. + +.|+++|...|
T Consensus 69 GGY~At~l~~~~G--i-rav~~NPav~P 93 (191)
T COG3150 69 GGYYATWLGFLCG--I-RAVVFNPAVRP 93 (191)
T ss_pred hHHHHHHHHHHhC--C-hhhhcCCCcCc
Confidence 9999999988763 3 45668887766
No 157
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.29 E-value=2.9e-06 Score=69.52 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=58.7
Q ss_pred hhHHHHHHHHhcCCeE----E--eecCCCCCCCCcccccccccHHHHHHHHHHHHHhc-CCCCCcEEEEEeChHHHHHHH
Q 038482 24 SRCHQTIALASLSYRA----V--APDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV-APNDEKVFVVGHDSGTYMACF 96 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v----~--~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~-~~~~~~~~l~GhS~Gg~ia~~ 96 (234)
.|..+++.|.+.||.. . -+|+|= | . ...+++...+...++.. ..++++++|+||||||.++..
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~---~---~----~~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~ 135 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRL---S---P----AERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARY 135 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhh---c---h----hhHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHH
Confidence 6899999999877642 2 267761 1 1 12345555555555433 111389999999999999999
Q ss_pred HHHhccc------cccceeeeccCCCC
Q 038482 97 LCSFRAN------RIKALVNLSVVFNP 117 (234)
Q Consensus 97 ~a~~~p~------~v~~lvl~~~~~~~ 117 (234)
+....+. .|+++|.++++...
T Consensus 136 fl~~~~~~~W~~~~i~~~i~i~~p~~G 162 (389)
T PF02450_consen 136 FLQWMPQEEWKDKYIKRFISIGTPFGG 162 (389)
T ss_pred HHHhccchhhHHhhhhEEEEeCCCCCC
Confidence 9887642 59999999987765
No 158
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=5.9e-06 Score=65.11 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCceEEEecCCCCcchh--h--HHHHHHHHhcCCeEEeecCCCCCCCCccc-cc--ccccHHHHHHHHHHHHHhcCCCCC
Q 038482 8 QGPEILFLYGFPELRYS--R--CHQTIALASLSYRAVAPDLRGFGDTDELL-EM--TSYTCFHVIGDLIGLIDLVAPNDE 80 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~--~--~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-~~--~~~~~~~~a~dl~~~~~~~~~~~~ 80 (234)
.+..+||+||+..+-.. + ..+....... ...+.+.+|-.|.--... +. ..|+-.+++.-|..+.+.... +
T Consensus 115 ~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~-~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~--~ 191 (377)
T COG4782 115 AKTVLVFVHGFNNTFEDAVYRTAQIVHDSGND-GVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPV--K 191 (377)
T ss_pred CCeEEEEEcccCCchhHHHHHHHHHHhhcCCC-cceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCC--c
Confidence 35688999999865432 2 2223333333 578888999877643322 00 234444555555555555567 8
Q ss_pred cEEEEEeChHHHHHHHHHHh--------ccccccceeeeccCCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSF--------RANRIKALVNLSVVFNP 117 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~--------~p~~v~~lvl~~~~~~~ 117 (234)
+++|++||||.+++++...+ .+.+++.+|+-+|-...
T Consensus 192 ~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 192 RIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred eEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 99999999999999887643 23457778887776554
No 159
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.4e-05 Score=68.63 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHh----------------cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALAS----------------LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGL 71 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~----------------~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~ 71 (234)
+|-||+||+|..||...-+.++....+ ..++..+.|+-+ .....+..++.++++-+-+.
T Consensus 88 sGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnE-----e~tAm~G~~l~dQtEYV~dA 162 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNE-----EFTAMHGHILLDQTEYVNDA 162 (973)
T ss_pred CCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccc-----hhhhhccHhHHHHHHHHHHH
Confidence 367999999999998877777655442 125666666532 00011234667777666655
Q ss_pred HHhc-----C---CC---CCcEEEEEeChHHHHHHHHHHh---ccccccceeeeccCCCC
Q 038482 72 IDLV-----A---PN---DEKVFVVGHDSGTYMACFLCSF---RANRIKALVNLSVVFNP 117 (234)
Q Consensus 72 ~~~~-----~---~~---~~~~~l~GhS~Gg~ia~~~a~~---~p~~v~~lvl~~~~~~~ 117 (234)
++.. + -+ +.+++++||||||.+|...+.. .+..|.-++..+++-..
T Consensus 163 Ik~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~a 222 (973)
T KOG3724|consen 163 IKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHAA 222 (973)
T ss_pred HHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcccC
Confidence 5432 2 00 3569999999999999777642 24456666666655443
No 160
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.22 E-value=2e-05 Score=65.74 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=68.6
Q ss_pred CceEEEecCCCCcchh-h--HHHHHHHHhc-CCeEEeecCCCCCCCCcccc-----cccccHHHHHHHHHHHHHhcC---
Q 038482 9 GPEILFLYGFPELRYS-R--CHQTIALASL-SYRAVAPDLRGFGDTDELLE-----MTSYTCFHVIGDLIGLIDLVA--- 76 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-~--~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~~~~~~--- 76 (234)
+|.+|++-|= ++... | ..++..|+++ |--+++++.|-||.|.+..+ ....|.+...+|+..+++.+.
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 6666666444 33322 1 3345555554 66799999999999987552 234577888888888886653
Q ss_pred --CCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 77 --PNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 77 --~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
..+.|++++|-|.||++|.-+-.++|+.|.+.+.-+++...
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 11358999999999999999999999999988877776653
No 161
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.21 E-value=2.8e-05 Score=61.72 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=69.8
Q ss_pred eEEEecCCCCcc---hhhHHHHHHHHhcCCeEEeecCCC--CCCCCc--------------cc-cc-cc---------cc
Q 038482 11 EILFLYGFPELR---YSRCHQTIALASLSYRAVAPDLRG--FGDTDE--------------LL-EM-TS---------YT 60 (234)
Q Consensus 11 ~lv~ihG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~G--~G~S~~--------------~~-~~-~~---------~~ 60 (234)
.||++||.+.+. .....+.+.|.+.||..+.+.+|. ...... .. .. .. ..
T Consensus 89 ~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 168 (310)
T PF12048_consen 89 AVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEA 168 (310)
T ss_pred EEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHH
Confidence 899999999875 345677788888999999998887 110000 00 00 00 01
Q ss_pred H----HHHH---HHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc-ccccceeeeccCCCC
Q 038482 61 C----FHVI---GDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA-NRIKALVNLSVVFNP 117 (234)
Q Consensus 61 ~----~~~a---~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p-~~v~~lvl~~~~~~~ 117 (234)
. ..+. +.+.++....+. .+++|+||+.|+..++.+....+ ..+.++|+|++....
T Consensus 169 ~~~~~~~~~ari~Aa~~~~~~~~~--~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~ 231 (310)
T PF12048_consen 169 REAYEERLFARIEAAIAFAQQQGG--KNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQ 231 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCc
Confidence 1 1222 223333344455 66999999999999999998765 459999999986644
No 162
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.20 E-value=1.6e-06 Score=66.72 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=73.0
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccc------c-c--------------cc-c-------
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL------E-M--------------TS-Y------- 59 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~-~--------------~~-~------- 59 (234)
-|.+||-||++++...|..+.-.|+.+||-|.+++.|.+-.+-... + + +. .
T Consensus 118 ~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeqv 197 (399)
T KOG3847|consen 118 YPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQV 197 (399)
T ss_pred ccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHHH
Confidence 3889999999999999999999999999999999998765432110 0 0 00 0
Q ss_pred --cHHHHHHHHHHHHHhcC---CC-------------------CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCC
Q 038482 60 --TCFHVIGDLIGLIDLVA---PN-------------------DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVF 115 (234)
Q Consensus 60 --~~~~~a~dl~~~~~~~~---~~-------------------~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 115 (234)
...+.. ....+++.+. .. -.++.|+|||+||+.++.....+ .+++..|+++..+
T Consensus 198 ~~R~~Ec~-~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~lD~WM 275 (399)
T KOG3847|consen 198 GQRAQECQ-KALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIALDAWM 275 (399)
T ss_pred HHHHHHHH-HHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeeeeeeee
Confidence 111111 1222222221 00 04789999999999997776654 4688999999888
Q ss_pred CC
Q 038482 116 NP 117 (234)
Q Consensus 116 ~~ 117 (234)
.|
T Consensus 276 ~P 277 (399)
T KOG3847|consen 276 FP 277 (399)
T ss_pred cc
Confidence 77
No 163
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.19 E-value=7.7e-06 Score=62.67 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=63.5
Q ss_pred ceEEEecCCCCcchhhHHHH--------HHHHhcCCeEEeecC-CCCCCCCcccccccccHHHHHHHHHHH-HHhcCCCC
Q 038482 10 PEILFLYGFPELRYSRCHQT--------IALASLSYRAVAPDL-RGFGDTDELLEMTSYTCFHVIGDLIGL-IDLVAPND 79 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~--------~~l~~~g~~v~~~D~-~G~G~S~~~~~~~~~~~~~~a~dl~~~-~~~~~~~~ 79 (234)
|-+||+||.+..+.+-+... ....+.++-|++|.+ +=+-.++... ..-.....+.+.+. .++..+..
T Consensus 192 PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t---~~~l~~~idli~~vlas~ynID~ 268 (387)
T COG4099 192 PLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT---LLYLIEKIDLILEVLASTYNIDR 268 (387)
T ss_pred cEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc---chhHHHHHHHHHHHHhhccCccc
Confidence 78899999998776654331 011111233444431 1111121111 11223333344423 34555544
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.++.++|.|+||+-++.++.++|+.+.+.+++++...
T Consensus 269 sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 269 SRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred ceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 6899999999999999999999999999999998665
No 164
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.16 E-value=7.8e-06 Score=69.34 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCceEEEecCCC---CcchhhHHHHHHHHhc-C-CeEEeecCC----CCCCCCcccccccccHHHHH---HHHHHHHHhc
Q 038482 8 QGPEILFLYGFP---ELRYSRCHQTIALASL-S-YRAVAPDLR----GFGDTDELLEMTSYTCFHVI---GDLIGLIDLV 75 (234)
Q Consensus 8 ~~~~lv~ihG~~---~~~~~~~~~~~~l~~~-g-~~v~~~D~~----G~G~S~~~~~~~~~~~~~~a---~dl~~~~~~~ 75 (234)
+.|+||+|||.+ ++...+ ....|... + +-|+.+++| |+..+.........-+.|+. +.+.+-++..
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~f 171 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAF 171 (493)
T ss_pred CCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 358999999964 233322 22334433 3 889999988 33333221111122333333 3344445556
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHh--ccccccceeeeccCCCC
Q 038482 76 APNDEKVFVVGHDSGTYMACFLCSF--RANRIKALVNLSVVFNP 117 (234)
Q Consensus 76 ~~~~~~~~l~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~~ 117 (234)
+..+.+++|+|+|.||..+..++.. .+..++++|++++....
T Consensus 172 ggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 172 GGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred CCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 6655899999999999998887765 34579999999876654
No 165
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.15 E-value=3e-05 Score=60.35 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCCceEEEecCCCCcch--hhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE
Q 038482 7 GQGPEILFLYGFPELRY--SRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF 83 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~--~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~ 83 (234)
+...|+|+.||+|.+-. ....+.+.+.+. |..++.+.. |.+.... .-.++.++++.+.+-+........-++
T Consensus 23 ~~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~~~s--~~~~~~~Qve~vce~l~~~~~l~~G~n 97 (314)
T PLN02633 23 SVSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGVGDS--WLMPLTQQAEIACEKVKQMKELSQGYN 97 (314)
T ss_pred cCCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCcccc--ceeCHHHHHHHHHHHHhhchhhhCcEE
Confidence 34569999999986543 344444444332 555666653 3332111 334667777776666654221114599
Q ss_pred EEEeChHHHHHHHHHHhccc--cccceeeeccCCCC
Q 038482 84 VVGHDSGTYMACFLCSFRAN--RIKALVNLSVVFNP 117 (234)
Q Consensus 84 l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~ 117 (234)
++|+|.||.++-.++.+.|+ .|+.+|-++++-..
T Consensus 98 aIGfSQGGlflRa~ierc~~~p~V~nlISlggph~G 133 (314)
T PLN02633 98 IVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHAG 133 (314)
T ss_pred EEEEccchHHHHHHHHHCCCCCCcceEEEecCCCCC
Confidence 99999999999999999987 59999999986554
No 166
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.06 E-value=1.1e-05 Score=62.04 Aligned_cols=107 Identities=7% Similarity=-0.006 Sum_probs=57.6
Q ss_pred CceEEEecCCCCcc---hhhHHHHHHHHhc--CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC-CCCCcE
Q 038482 9 GPEILFLYGFPELR---YSRCHQTIALASL--SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA-PNDEKV 82 (234)
Q Consensus 9 ~~~lv~ihG~~~~~---~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~-~~~~~~ 82 (234)
..|||+.||++.+. ..+..+.+.+.+. |--|+.++. |-+.+......---++++.++.+.+.+..-. + ..-+
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L-~~G~ 82 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPSEDVENSFFGNVNDQVEQVCEQLANDPEL-ANGF 82 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGG-TT-E
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhh-hcce
Confidence 35999999998643 3455554444432 566777775 3222111110012355666666666665421 1 1469
Q ss_pred EEEEeChHHHHHHHHHHhccc-cccceeeeccCCCC
Q 038482 83 FVVGHDSGTYMACFLCSFRAN-RIKALVNLSVVFNP 117 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p~-~v~~lvl~~~~~~~ 117 (234)
+++|+|.||.++-.++.+.|+ .|+.+|-++++-..
T Consensus 83 ~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~G 118 (279)
T PF02089_consen 83 NAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHMG 118 (279)
T ss_dssp EEEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT-
T ss_pred eeeeeccccHHHHHHHHHCCCCCceeEEEecCcccc
Confidence 999999999999999999865 69999999976554
No 167
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=98.02 E-value=1e-05 Score=65.86 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHhcCCe------EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHH
Q 038482 23 YSRCHQTIALASLSYR------AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACF 96 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~------v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~ 96 (234)
..|..+++.|...||. -..+|+| .|-...+..+..+..+..-++...+.-|. +|++|++||||+.+.+.
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwR---ls~~~~e~rd~yl~kLK~~iE~~~~~~G~--kkVvlisHSMG~l~~ly 198 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWR---LSYHNSEERDQYLSKLKKKIETMYKLNGG--KKVVLISHSMGGLYVLY 198 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchh---hccCChhHHHHHHHHHHHHHHHHHHHcCC--CceEEEecCCccHHHHH
Confidence 4789999999988876 3446766 22222222345666667777776666677 89999999999999999
Q ss_pred HHHhccc--------cccceeeeccCCCC
Q 038482 97 LCSFRAN--------RIKALVNLSVVFNP 117 (234)
Q Consensus 97 ~a~~~p~--------~v~~lvl~~~~~~~ 117 (234)
+...+++ -+++++.++++...
T Consensus 199 Fl~w~~~~~~~W~~k~I~sfvnig~p~lG 227 (473)
T KOG2369|consen 199 FLKWVEAEGPAWCDKYIKSFVNIGAPWLG 227 (473)
T ss_pred HHhcccccchhHHHHHHHHHHccCchhcC
Confidence 9988776 46778877765554
No 168
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.98 E-value=3.9e-05 Score=56.46 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=76.3
Q ss_pred ceEEEecCCCCcch---hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC--CCcEEE
Q 038482 10 PEILFLYGFPELRY---SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN--DEKVFV 84 (234)
Q Consensus 10 ~~lv~ihG~~~~~~---~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~--~~~~~l 84 (234)
.-||||-|++..-- .-.++..+|.+.+|.++.+.++.+ +.+-...++++-++|+..++++++.. -..++|
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 46788988876443 236778889988999999987532 11123457788899999999988763 148999
Q ss_pred EEeChHHHHHHHHHHh--ccccccceeeeccCCCC
Q 038482 85 VGHDSGTYMACFLCSF--RANRIKALVNLSVVFNP 117 (234)
Q Consensus 85 ~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~~ 117 (234)
+|||.|..=.+.|... .|..+++.|+.+|...-
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDr 146 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDR 146 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccchh
Confidence 9999999888888733 56778888888876543
No 169
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.95 E-value=2.5e-05 Score=65.62 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=73.7
Q ss_pred CCCceEEEecCCCCcch---hhH--HHHH---HHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC
Q 038482 7 GQGPEILFLYGFPELRY---SRC--HQTI---ALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~---~~~--~~~~---~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
|+.|+++..+-++-... .+. ...+ .+..+||.|+..|.||.|.|.....+....-.+=..|+++++-...-.
T Consensus 43 g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWs 122 (563)
T COG2936 43 GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWS 122 (563)
T ss_pred CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCcc
Confidence 45678888883333222 111 1122 577789999999999999999877321110111123344444333333
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+.+|..+|.|++|...+++|+.+|.-+++++...+...
T Consensus 123 NG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 123 NGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred CCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 58999999999999999999998888888888777655
No 170
>COG0627 Predicted esterase [General function prediction only]
Probab=97.89 E-value=7.9e-05 Score=59.00 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=71.6
Q ss_pred ceEEEecCCCCcchhh---HHHHHHHHhcCCeEEeecCC--------------CCCCCCcccccc------cccHHHH-H
Q 038482 10 PEILFLYGFPELRYSR---CHQTIALASLSYRAVAPDLR--------------GFGDTDELLEMT------SYTCFHV-I 65 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~---~~~~~~l~~~g~~v~~~D~~--------------G~G~S~~~~~~~------~~~~~~~-a 65 (234)
|++.++||..++...| ..+-+.....|+.++++|-. |-+.|--.+... .+.++++ .
T Consensus 55 pV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tfl~ 134 (316)
T COG0627 55 PVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFLT 134 (316)
T ss_pred CEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHHHH
Confidence 6888999999886444 33334444557888887422 222221111111 2555443 3
Q ss_pred HHHHHHHH-hcCCCC--CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCC
Q 038482 66 GDLIGLID-LVAPND--EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVS 122 (234)
Q Consensus 66 ~dl~~~~~-~~~~~~--~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 122 (234)
+.+-+.++ +..... ..-.++||||||.=|+.+|+++|++++.+.-+++...++....
T Consensus 135 ~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~ 194 (316)
T COG0627 135 QELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWG 194 (316)
T ss_pred hhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccc
Confidence 44554444 333211 1689999999999999999999999999999998777754333
No 171
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.89 E-value=4e-05 Score=64.55 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCCcEEEEEeChHHHHHHHHHH
Q 038482 24 SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.|..+++.|.+.||. --++.|-...=+.........+.+-..+...++.. +. ++++|+||||||.+++.+..
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~ngg--kKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGG--KKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCC--CeEEEEEeCCchHHHHHHHH
Confidence 679999999999986 33443322111111001112244445555555433 34 89999999999999999876
Q ss_pred hc---------------cccccceeeeccCCCC
Q 038482 100 FR---------------ANRIKALVNLSVVFNP 117 (234)
Q Consensus 100 ~~---------------p~~v~~lvl~~~~~~~ 117 (234)
.. .+.|++.|.++++...
T Consensus 233 wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 233 WVEAPAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred hccccccccCCcchHHHHHHHHHheecccccCC
Confidence 32 1247899999987665
No 172
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.80 E-value=6.1e-05 Score=53.47 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhc----CCCCCcEEEEEeChHHHHHHHHHHhccc----cccceeeeccCCC
Q 038482 62 FHVIGDLIGLIDLV----APNDEKVFVVGHDSGTYMACFLCSFRAN----RIKALVNLSVVFN 116 (234)
Q Consensus 62 ~~~a~dl~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~ 116 (234)
..+...+...++.. .. .+++++|||+||.+|..++.+.++ ....++.++++..
T Consensus 8 ~~~~~~i~~~~~~~~~~~p~--~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~ 68 (153)
T cd00741 8 RSLANLVLPLLKSALAQYPD--YKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRV 68 (153)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcc
Confidence 34444555554443 45 899999999999999999987654 4566776776543
No 173
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00054 Score=50.24 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=67.6
Q ss_pred CceEEEecCCCC-cchhhH---------------HHHHHHHhcCCeEEeecCCC---CCCCCcccccccccHHHHHHH-H
Q 038482 9 GPEILFLYGFPE-LRYSRC---------------HQTIALASLSYRAVAPDLRG---FGDTDELLEMTSYTCFHVIGD-L 68 (234)
Q Consensus 9 ~~~lv~ihG~~~-~~~~~~---------------~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~~~~~~~a~d-l 68 (234)
...+|+|||.|- .+..|. +.++.-.+.||.|++.+.-- +-.+...+.....+.-+.+.- .
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 358999999975 334553 33445555689999987320 111111111112233333333 3
Q ss_pred HHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc--cccceeeeccCCCC
Q 038482 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN--RIKALVNLSVVFNP 117 (234)
Q Consensus 69 ~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~ 117 (234)
..++..... +++.++.||.||...+.+..++|+ +|.++.+.++++..
T Consensus 181 ~~~v~pa~~--~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~~~ 229 (297)
T KOG3967|consen 181 KNIVLPAKA--ESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAMGS 229 (297)
T ss_pred HHHhcccCc--ceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccccC
Confidence 445555556 899999999999999999999874 68888888877443
No 174
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00024 Score=53.78 Aligned_cols=91 Identities=10% Similarity=0.046 Sum_probs=60.6
Q ss_pred CCcchhhHH--HHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHH--------HHHHH------hcCCCCCcE
Q 038482 19 PELRYSRCH--QTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL--------IGLID------LVAPNDEKV 82 (234)
Q Consensus 19 ~~~~~~~~~--~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl--------~~~~~------~~~~~~~~~ 82 (234)
.++....+. +...+.+++...++++-|=||+...+. ...+.-+.+.|+ .++.+ ..|. .++
T Consensus 122 tgdh~y~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~--q~~~~Le~vtDlf~mG~A~I~E~~~lf~Ws~~~g~--g~~ 197 (371)
T KOG1551|consen 122 TGDHVYTRRLVLSKPINKREIATMVLEKPFYGQRVPEE--QIIHMLEYVTDLFKMGRATIQEFVKLFTWSSADGL--GNL 197 (371)
T ss_pred cCCceeEeeeeecCchhhhcchheeeecccccccCCHH--HHHHHHHHHHHHHHhhHHHHHHHHHhcccccccCc--ccc
Confidence 344444433 456677778899999999999987766 222222333332 22222 2366 899
Q ss_pred EEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 83 FVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
.++|-||||-+|-.....++.-|.-+=++++
T Consensus 198 ~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~ 228 (371)
T KOG1551|consen 198 NLVGRSMGGDIANQVGSLHQKPVATAPCLNS 228 (371)
T ss_pred eeeeeecccHHHHhhcccCCCCccccccccc
Confidence 9999999999999988888777765555554
No 175
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=97.70 E-value=0.00017 Score=59.43 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=67.4
Q ss_pred CceEEEecCCC---CcchhhHHHHHHHHhcC-CeEEeecCCC--CCCCCccc----c--cccccHHHH---HHHHHHHHH
Q 038482 9 GPEILFLYGFP---ELRYSRCHQTIALASLS-YRAVAPDLRG--FGDTDELL----E--MTSYTCFHV---IGDLIGLID 73 (234)
Q Consensus 9 ~~~lv~ihG~~---~~~~~~~~~~~~l~~~g-~~v~~~D~~G--~G~S~~~~----~--~~~~~~~~~---a~dl~~~~~ 73 (234)
.|++|+|||.+ ++......--..|+++| +=|+.+++|= +|.=+-+. . ....-+.|+ .+.+.+-|+
T Consensus 94 ~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe 173 (491)
T COG2272 94 LPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIE 173 (491)
T ss_pred CcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHHHHH
Confidence 48999999984 34444222234677776 6666666541 22211111 0 011234444 355566677
Q ss_pred hcCCCCCcEEEEEeChHHHHHHHHHHh--ccccccceeeeccCCC
Q 038482 74 LVAPNDEKVFVVGHDSGTYMACFLCSF--RANRIKALVNLSVVFN 116 (234)
Q Consensus 74 ~~~~~~~~~~l~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~ 116 (234)
+.|..+.+|.|+|+|-|++.++.+.+- ....+.++|+.++...
T Consensus 174 ~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 174 AFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 788767899999999999888766653 2346889999988774
No 176
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.64 E-value=0.00018 Score=50.13 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
+...+.+.++++.... .++++.|||+||.+|..++...
T Consensus 48 ~~~~~~l~~~~~~~~~--~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 48 DQILDALKELVEKYPD--YSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHSTT--SEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC--ccchhhccchHHHHHHHHHHhh
Confidence 4555666776666665 7999999999999999988764
No 177
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.60 E-value=7.3e-05 Score=54.64 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=69.5
Q ss_pred CceEEEecCCCCcchhhH---HHHHHHHhcCCeEEeec--CCCCC---CCCccc-------------cc--ccccHHH-H
Q 038482 9 GPEILFLYGFPELRYSRC---HQTIALASLSYRAVAPD--LRGFG---DTDELL-------------EM--TSYTCFH-V 64 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~---~~~~~l~~~g~~v~~~D--~~G~G---~S~~~~-------------~~--~~~~~~~-~ 64 (234)
-|+|.++.|+.++...+. .+-+.-.++|..|+.|| .||.- .++.-+ ++ ..|.+.+ .
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 478999999999988873 23344456789999999 44422 121110 00 1133322 2
Q ss_pred HHHHHHHHHhc--CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 65 IGDLIGLIDLV--APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 65 a~dl~~~~~~~--~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
++.|-+++..- .+...++.+.||||||.=|+..++++|.+.+++-..+|-..|
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP 178 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNP 178 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCc
Confidence 34444544421 121267999999999999999999999988887776665544
No 178
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.59 E-value=0.0009 Score=53.93 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=70.2
Q ss_pred CceEEEecCCCCcchhhHHHHHH------HHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIA------LASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKV 82 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~------l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~ 82 (234)
.|.||++||.|---.....++.. +.+ ...++++|+.-.. |.......+.-+.+.++-...+++..|- +++
T Consensus 122 DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~-~~~~~~~yPtQL~qlv~~Y~~Lv~~~G~--~nI 197 (374)
T PF10340_consen 122 DPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTS-SDEHGHKYPTQLRQLVATYDYLVESEGN--KNI 197 (374)
T ss_pred CcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccc-cccCCCcCchHHHHHHHHHHHHHhccCC--CeE
Confidence 68999999997644433323222 223 2578888865332 0011111345667777778888877788 999
Q ss_pred EEEEeChHHHHHHHHHHh--ccc---cccceeeeccCCCCC
Q 038482 83 FVVGHDSGTYMACFLCSF--RAN---RIKALVNLSVVFNPN 118 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~--~p~---~v~~lvl~~~~~~~~ 118 (234)
+|+|=|-||.+++.+... +++ .-+++|+++|...+.
T Consensus 198 ~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 198 ILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 999999999998877753 222 257899999987763
No 179
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.00028 Score=56.60 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=68.1
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCCCcEEEEE
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APNDEKVFVVG 86 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~~~~~l~G 86 (234)
.-||+.|=|+....=..+.++|+++|+.|+.+|-.=|=.|.+ +.+..+.|+..+++.. +. .++.|+|
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~~r-------tPe~~a~Dl~r~i~~y~~~w~~--~~~~liG 332 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWSER-------TPEQIAADLSRLIRFYARRWGA--KRVLLIG 332 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhccC-------CHHHHHHHHHHHHHHHHHhhCc--ceEEEEe
Confidence 457777777777777788999999999999999433444444 4578888888888765 45 7999999
Q ss_pred eChHHHHHHHHHHhccc----cccceeeec
Q 038482 87 HDSGTYMACFLCSFRAN----RIKALVNLS 112 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p~----~v~~lvl~~ 112 (234)
+|+|+-+.-....+.|. +|+.+.+++
T Consensus 333 ySfGADvlP~~~n~L~~~~r~~v~~~~ll~ 362 (456)
T COG3946 333 YSFGADVLPFAYNRLPPATRQRVRMVSLLG 362 (456)
T ss_pred ecccchhhHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999887655555553 455555544
No 180
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.56 E-value=0.0016 Score=47.19 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHhcCCC---CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 60 TCFHVIGDLIGLIDLVAPN---DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 60 ~~~~~a~dl~~~~~~~~~~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
--++-+.+|.++++.+... +..+.++|||+|+.++-..+.+.+..+..+|+++++...
T Consensus 86 ~A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g 146 (177)
T PF06259_consen 86 YARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG 146 (177)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCC
Confidence 3467788888888777432 257899999999999988777767789999999987754
No 181
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.47 E-value=0.00054 Score=57.67 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=91.2
Q ss_pred CceEEEecCCC--CcchhhH-HHHHHHHhcC--CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh--cCCC---
Q 038482 9 GPEILFLYGFP--ELRYSRC-HQTIALASLS--YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL--VAPN--- 78 (234)
Q Consensus 9 ~~~lv~ihG~~--~~~~~~~-~~~~~l~~~g--~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~--~~~~--- 78 (234)
.|.++++||.+ ....+|. .+-..|.-.| ..+-.+|++.- ....++..-++.+..+.+. +.++
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~--------igG~nI~h~ae~~vSf~r~kvlei~gef 247 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNP--------IGGANIKHAAEYSVSFDRYKVLEITGEF 247 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCC--------CCCcchHHHHHHHHHHhhhhhhhhhccC
Confidence 47889999998 2222222 2222232222 45666676521 1224566666666666552 1111
Q ss_pred -CCcEEEEEeChHHHHHHHHHHhccc-cccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHhh
Q 038482 79 -DEKVFVVGHDSGTYMACFLCSFRAN-RIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQI 156 (234)
Q Consensus 79 -~~~~~l~GhS~Gg~ia~~~a~~~p~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
+.+++|+|.|||+.++.....-..+ -|.++|+++-+... ..
T Consensus 248 pha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~-vd------------------------------------ 290 (784)
T KOG3253|consen 248 PHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDT-VD------------------------------------ 290 (784)
T ss_pred CCCceEEEecccCceeeEEeccccCCceEEEEEEecccccC-CC------------------------------------
Confidence 3799999999998888777765432 37788877743321 10
Q ss_pred hhcCCCCCCCCCCCCCCCchhHHHHHHhhhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccc
Q 038482 157 SKGYGHPPDAIIALPGWLSDEDIKYFTTKFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFIN 231 (234)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~ 231 (234)
.++.+.++.+.. ++.| |++.|.+|..+ .+++++.+..-.+++++.+++|-+-
T Consensus 291 -------------gprgirDE~Lld----------mk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsma 347 (784)
T KOG3253|consen 291 -------------GPRGIRDEALLD----------MKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMA 347 (784)
T ss_pred -------------cccCCcchhhHh----------cCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCcccc
Confidence 111233333333 7889 88999999988 3444444433348999999999753
No 182
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.41 E-value=0.0012 Score=54.76 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCceEEEecCCCCcchhhHHHHHH-------------------HHhcCCeEEeec-CCCCCCCCccccc-ccccHHHHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIA-------------------LASLSYRAVAPD-LRGFGDTDELLEM-TSYTCFHVIG 66 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~-------------------l~~~g~~v~~~D-~~G~G~S~~~~~~-~~~~~~~~a~ 66 (234)
+.|.+|++.|.++.+++|-.+.+. ..+. .+++.+| ..|-|.|...... ...+.++.|+
T Consensus 39 ~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~ 117 (415)
T PF00450_consen 39 DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFIDQPVGTGFSYGNDPSDYVWNDDQAAE 117 (415)
T ss_dssp SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE--STTSTT-EESSGGGGS-SHHHHHH
T ss_pred CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEEeecCceEEeeccccccccchhhHHHH
Confidence 468999999999999988544211 1222 6899999 5599999887732 2447788888
Q ss_pred HHHHHHHhc-----CCCCCcEEEEEeChHHHHHHHHHH----hc------cccccceeeeccCCCC
Q 038482 67 DLIGLIDLV-----APNDEKVFVVGHDSGTYMACFLCS----FR------ANRIKALVNLSVVFNP 117 (234)
Q Consensus 67 dl~~~~~~~-----~~~~~~~~l~GhS~Gg~ia~~~a~----~~------p~~v~~lvl~~~~~~~ 117 (234)
|+.++++.. ..+..+++|.|-|.||..+-.+|. +. +=.++++++.++...+
T Consensus 118 ~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 118 DLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred HHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 888888655 111269999999999976655553 23 2247888888876664
No 183
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.29 E-value=0.0022 Score=54.94 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=60.5
Q ss_pred CceEEEecCCC---Ccc--hhhHHHHHHHHhcCCeEEeecCC----CCCCCCccccc-ccccHHHHHHH---HHHHHHhc
Q 038482 9 GPEILFLYGFP---ELR--YSRCHQTIALASLSYRAVAPDLR----GFGDTDELLEM-TSYTCFHVIGD---LIGLIDLV 75 (234)
Q Consensus 9 ~~~lv~ihG~~---~~~--~~~~~~~~~l~~~g~~v~~~D~~----G~G~S~~~~~~-~~~~~~~~a~d---l~~~~~~~ 75 (234)
-|++|+|||.+ +++ ..+.. ...+.+++.=|+.+.+| |+-.+...... .-+-+.|+... +.+-|...
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~~-~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~F 203 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYDG-ASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAF 203 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGHT-HHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGG
T ss_pred cceEEEeecccccCCCcccccccc-cccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhc
Confidence 38999999975 233 23333 33344557888888876 22222211111 23344455433 44445566
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHh--ccccccceeeeccCCCC
Q 038482 76 APNDEKVFVVGHDSGTYMACFLCSF--RANRIKALVNLSVVFNP 117 (234)
Q Consensus 76 ~~~~~~~~l~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~~ 117 (234)
|..+++|+|+|||-||..+..++.. ....++++|+.+++...
T Consensus 204 GGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~ 247 (535)
T PF00135_consen 204 GGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALS 247 (535)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTS
T ss_pred ccCCcceeeeeecccccccceeeecccccccccccccccccccc
Confidence 6655799999999999887666654 23579999999986654
No 184
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.26 E-value=0.0015 Score=52.69 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=69.8
Q ss_pred ceEEEecCCCCcchhhH-------HHHHHHHhcCCeEEeecCCCCCCCCcccc--------cccccHHHHHHHHHHHHHh
Q 038482 10 PEILFLYGFPELRYSRC-------HQTIALASLSYRAVAPDLRGFGDTDELLE--------MTSYTCFHVIGDLIGLIDL 74 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~-------~~~~~l~~~g~~v~~~D~~G~G~S~~~~~--------~~~~~~~~~a~dl~~~~~~ 74 (234)
-||++--|.-++.+-|. .+++.|. --++.++.|=||.|-+--. ..-.|.+.-..|...++..
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~---AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~ 157 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPELK---ALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTF 157 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhhC---ceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHH
Confidence 57888888877655443 3344443 4588899999999876431 1122444444444444444
Q ss_pred c----CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 75 V----APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 75 ~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+ +....+++++|-|.|||++.-+=.++|..|.+...-+.+..
T Consensus 158 lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 158 LKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 3 33246899999999999999998999999888776655444
No 185
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.23 E-value=0.0008 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.384 Sum_probs=19.7
Q ss_pred CcEEEEEeChHHHHHHHHHHhc
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
.++++.|||+||.+|..++...
T Consensus 128 ~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 128 YKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred ceEEEEccCHHHHHHHHHHHHH
Confidence 7899999999999999988753
No 186
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=97.23 E-value=0.0029 Score=48.83 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=75.1
Q ss_pred CceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 9 GPEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 9 ~~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
.|.|+++-.+.++. ...+..+++|... ..|++.|+-.--.- +......+++++.+-+.+++..+|. ..++++.
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~V--p~~~G~FdldDYIdyvie~~~~~Gp---~~hv~aV 176 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMV--PLEAGHFDLDDYIDYVIEMINFLGP---DAHVMAV 176 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeecccccee--ecccCCccHHHHHHHHHHHHHHhCC---CCcEEEE
Confidence 45666666665544 4567778888886 78999998643322 2233678999999999999999998 5899998
Q ss_pred ChHH-----HHHHHHHHhccccccceeeeccCCCC
Q 038482 88 DSGT-----YMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 88 S~Gg-----~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+.=+ ++++..+...|..-...++++++...
T Consensus 177 CQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDa 211 (415)
T COG4553 177 CQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDA 211 (415)
T ss_pred ecCCchHHHHHHHHHhcCCCCCCceeeeecCcccc
Confidence 8765 34444444567778899999988765
No 187
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.22 E-value=0.0031 Score=51.02 Aligned_cols=128 Identities=14% Similarity=0.214 Sum_probs=72.5
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCCCCCchhHHHHhhhhcCcccccccccCcchHHHHHHh
Q 038482 76 APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNTSVSNSNWIKALGAYYGDDYYIGGIHEPGEIEAQFEQ 155 (234)
Q Consensus 76 ~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
.+ ++++|.|.|==|..++..|+ -..||++++-+.-...... ......++.+ +..+... +..
T Consensus 170 ~i--~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~----~~l~h~y~~y-G~~ws~a-----------~~d 230 (367)
T PF10142_consen 170 NI--EKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMK----ANLEHQYRSY-GGNWSFA-----------FQD 230 (367)
T ss_pred Cc--cEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcH----HHHHHHHHHh-CCCCccc-----------hhh
Confidence 57 89999999999999999998 6788988886654443211 0111222222 1000000 000
Q ss_pred hhhcCCCCCCCCCCCCCCCchhHHHHHHh---hhcccCCcccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCC
Q 038482 156 ISKGYGHPPDAIIALPGWLSDEDIKYFTT---KFDKNALLKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVG 227 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~ag 227 (234)
+. . +.....+....+....+ .+.=.+.+++| ++|.|..|++. ...+-..+|+-+.+.++|+++
T Consensus 231 Y~------~---~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~ 301 (367)
T PF10142_consen 231 YY------N---EGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAG 301 (367)
T ss_pred hh------H---hCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCC
Confidence 00 0 01122222222222222 11111228999 99999999886 455666677666899999999
Q ss_pred Cccc
Q 038482 228 HFIN 231 (234)
Q Consensus 228 H~~~ 231 (234)
|..-
T Consensus 302 H~~~ 305 (367)
T PF10142_consen 302 HSLI 305 (367)
T ss_pred cccc
Confidence 9753
No 188
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.16 E-value=0.002 Score=48.68 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=32.3
Q ss_pred CcEEEEEeChHHHHHHHHHHhc----cccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR----ANRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~----p~~v~~lvl~~~~~~~ 117 (234)
+++.+.|||.||.+|...++.. .++|.++...+++...
T Consensus 84 ~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 84 GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 4699999999999999998873 4578899999987766
No 189
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.14 E-value=0.0039 Score=51.55 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCceEEEecCCCCcchhhH-----HHHHHHHhcCCeEEeecCCCCCCCCcccc-----cccccHHHHHHHHHHHHHhcC
Q 038482 7 GQGPEILFLYGFPELRYSRC-----HQTIALASLSYRAVAPDLRGFGDTDELLE-----MTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~~-----~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~~~~~~ 76 (234)
..+|..|||-|=+.-...|- .....-.+.|-.|+.++.|=||.|.+... ....|......|+.++|+++.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 35788899988776555552 22333344477899999999999866552 123477778889999998874
Q ss_pred CC-----CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 77 PN-----DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 77 ~~-----~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
.+ +.+++.+|-|.-|.++.-+=..+||.+.+.|.-+++...
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A 209 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLA 209 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeE
Confidence 32 238999999999999988888899999988877766553
No 190
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.10 E-value=0.0011 Score=50.67 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHHh-cCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 67 DLIGLIDL-VAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 67 dl~~~~~~-~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.+.-++++ ..++.++-.++|||+||.+++.....+|+.+...++++|+.-
T Consensus 123 ~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW 173 (264)
T COG2819 123 QLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW 173 (264)
T ss_pred hhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh
Confidence 34444443 333336689999999999999999999999999999998653
No 191
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.10 E-value=0.018 Score=44.05 Aligned_cols=101 Identities=9% Similarity=-0.031 Sum_probs=57.8
Q ss_pred eEEEecCCCCcch-hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCC-CcEEEEEeC
Q 038482 11 EILFLYGFPELRY-SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPND-EKVFVVGHD 88 (234)
Q Consensus 11 ~lv~ihG~~~~~~-~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~-~~~~l~GhS 88 (234)
|+|++=||.+... .....++...+.|++++.+-.+-.....+. ..+...++.+.+.+....... .++.+=.+|
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~il~H~FS 75 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS-----KRLAPAADKLLELLSDSQSASPPPILFHSFS 75 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec-----cchHHHHHHHHHHhhhhccCCCCCEEEEEEE
Confidence 5677778875443 344555555567899999865422111111 245556666666665554421 278899999
Q ss_pred hHHHHHHHHHHh-----c--c---ccccceeeeccCCC
Q 038482 89 SGTYMACFLCSF-----R--A---NRIKALVNLSVVFN 116 (234)
Q Consensus 89 ~Gg~ia~~~a~~-----~--p---~~v~~lvl~~~~~~ 116 (234)
.||...+..... . . .+++++|+-+++..
T Consensus 76 nGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~ 113 (240)
T PF05705_consen 76 NGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGI 113 (240)
T ss_pred CchHHHHHHHHHHHHhcccccccccccceeEEeCCCCc
Confidence 988766555431 1 1 13667775554443
No 192
>PLN02162 triacylglycerol lipase
Probab=97.09 E-value=0.0015 Score=53.93 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 60 TCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 60 ~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.+..+.+.+.+++.+... .++++.|||+||++|..+|.
T Consensus 260 ay~~I~~~L~~lL~k~p~--~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 260 AYYTIRQMLRDKLARNKN--LKYILTGHSLGGALAALFPA 297 (475)
T ss_pred hHHHHHHHHHHHHHhCCC--ceEEEEecChHHHHHHHHHH
Confidence 344555666666666555 79999999999999988765
No 193
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.00 E-value=0.0089 Score=45.32 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccH-HHHHHHHHHHHHhc----CCC--CCcEEEEEeChHHHHHH
Q 038482 23 YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FHVIGDLIGLIDLV----APN--DEKVFVVGHDSGTYMAC 95 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~-~~~a~dl~~~~~~~----~~~--~~~~~l~GhS~Gg~ia~ 95 (234)
-.|+.+.+.|.++||.|++.-+.- |. +.... .+..+.....++.+ +.. .-++.-+|||||+-+-+
T Consensus 34 itYr~lLe~La~~Gy~ViAtPy~~-tf-------DH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhl 105 (250)
T PF07082_consen 34 ITYRYLLERLADRGYAVIATPYVV-TF-------DHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHL 105 (250)
T ss_pred HHHHHHHHHHHhCCcEEEEEecCC-CC-------cHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHH
Confidence 468999999999999999986531 10 11111 11111222222222 221 12678899999998888
Q ss_pred HHHHhccccccceeeeccCCC
Q 038482 96 FLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 96 ~~a~~~p~~v~~lvl~~~~~~ 116 (234)
.+...++..-++-++++-.-.
T Consensus 106 Li~s~~~~~r~gniliSFNN~ 126 (250)
T PF07082_consen 106 LIGSLFDVERAGNILISFNNF 126 (250)
T ss_pred HHhhhccCcccceEEEecCCh
Confidence 888776554467777775443
No 194
>PLN00413 triacylglycerol lipase
Probab=96.93 E-value=0.0027 Score=52.52 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 61 ~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
...+.+.+.++++.... .++++.|||+||++|..+|.
T Consensus 267 yy~i~~~Lk~ll~~~p~--~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 267 YYTILRHLKEIFDQNPT--SKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHHCCC--CeEEEEecCHHHHHHHHHHH
Confidence 34566677777777766 79999999999999998875
No 195
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.82 E-value=0.0018 Score=52.25 Aligned_cols=86 Identities=12% Similarity=-0.034 Sum_probs=56.2
Q ss_pred CceEEEecCCCC-cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccH-HHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 9 GPEILFLYGFPE-LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTC-FHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 9 ~~~lv~ihG~~~-~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~-~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
+.-+||+||+-+ +...|...+....+. +.-..+..+|+-............+ ...++++.+.+....+ +++-++|
T Consensus 80 ~HLvVlthGi~~~~~~~~~~~~~~~~kk-~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si--~kISfvg 156 (405)
T KOG4372|consen 80 KHLVVLTHGLHGADMEYWKEKIEQMTKK-MPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSI--EKISFVG 156 (405)
T ss_pred ceEEEeccccccccHHHHHHHHHhhhcC-CCcceEeeeccccchhhccccceeeecccHHHHhhhhhcccc--ceeeeee
Confidence 457899999988 677888888887775 4333444455433322221111122 4566666766666678 8999999
Q ss_pred eChHHHHHHHH
Q 038482 87 HDSGTYMACFL 97 (234)
Q Consensus 87 hS~Gg~ia~~~ 97 (234)
||+||.++..+
T Consensus 157 hSLGGLvar~A 167 (405)
T KOG4372|consen 157 HSLGGLVARYA 167 (405)
T ss_pred eecCCeeeeEE
Confidence 99999887443
No 196
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.70 E-value=0.0056 Score=45.33 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=45.7
Q ss_pred HHHHHhcCCeEEeecCCCCCCCCcc-c-cc-----ccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 29 TIALASLSYRAVAPDLRGFGDTDEL-L-EM-----TSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 29 ~~~l~~~g~~v~~~D~~G~G~S~~~-~-~~-----~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
+..|... .+|++|=+|--...... . .. ....+.|..+....+++.... +++++|+|||.|+++...+...+
T Consensus 39 as~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~-GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 39 ASAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNN-GRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCC-CCCEEEEEeChHHHHHHHHHHHH
Confidence 4446565 79999988765433322 1 00 122445555555666665533 37999999999999999998754
No 197
>PLN02571 triacylglycerol lipase
Probab=96.69 E-value=0.0032 Score=51.48 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHh
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
+.+..++..+++......-++++.|||+||++|++.|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 345566666666654411268999999999999998864
No 198
>PLN02408 phospholipase A1
Probab=96.68 E-value=0.0054 Score=49.43 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
..+.+..+++.......++++.|||+||++|.++|...
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 34556666666554113699999999999999988653
No 199
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.65 E-value=0.0057 Score=49.05 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhccc-----cccceeeeccCCCC
Q 038482 76 APNDEKVFVVGHDSGTYMACFLCSFRAN-----RIKALVNLSVVFNP 117 (234)
Q Consensus 76 ~~~~~~~~l~GhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~~ 117 (234)
+. +|+.|+|||+|+.+.........+ .|..+++++++...
T Consensus 218 G~--RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~ 262 (345)
T PF05277_consen 218 GE--RPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPS 262 (345)
T ss_pred CC--CceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCC
Confidence 55 799999999999998777654443 37889999876644
No 200
>PLN02454 triacylglycerol lipase
Probab=96.61 E-value=0.0045 Score=50.60 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCC--cEEEEEeChHHHHHHHHHHh
Q 038482 68 LIGLIDLVAPNDE--KVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 68 l~~~~~~~~~~~~--~~~l~GhS~Gg~ia~~~a~~ 100 (234)
+..+++.... + ++++.|||+||++|+++|..
T Consensus 216 V~~l~~~Yp~--~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 216 IKELLERYKD--EKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHhCCC--CCceEEEEecCHHHHHHHHHHHH
Confidence 3444444433 4 49999999999999999854
No 201
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0063 Score=47.32 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=34.4
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNPNT 119 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 119 (234)
..-+|.|-|+||.+++..+.++|+++-.++.-++.+...+
T Consensus 177 ~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~ 216 (299)
T COG2382 177 DGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTP 216 (299)
T ss_pred CCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCc
Confidence 4578999999999999999999999988888887665533
No 202
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.57 E-value=0.0082 Score=43.78 Aligned_cols=101 Identities=17% Similarity=0.075 Sum_probs=54.9
Q ss_pred eEEEecCCCCcchh---hHHHHHHHHhc-C---CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc----CCCC
Q 038482 11 EILFLYGFPELRYS---RCHQTIALASL-S---YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV----APND 79 (234)
Q Consensus 11 ~lv~ihG~~~~~~~---~~~~~~~l~~~-g---~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~~~~ 79 (234)
.||+..|.+..... -..+.+.+.+. | ..+..+++|-..... . ...+...=+.++...++.. ..
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~--~--y~~S~~~G~~~~~~~i~~~~~~CP~-- 80 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPN--S--YGDSVAAGVANLVRLIEEYAARCPN-- 80 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGG--S--CHHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcc--c--ccccHHHHHHHHHHHHHHHHHhCCC--
Confidence 56777777664332 12333444432 2 345555655322211 1 2234444455555555433 33
Q ss_pred CcEEEEEeChHHHHHHHHHHh------ccccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSF------RANRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~------~p~~v~~lvl~~~~~~~ 117 (234)
.+++|+|+|+|++++..++.. ..++|.++|+++-+...
T Consensus 81 ~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~~ 124 (179)
T PF01083_consen 81 TKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRRG 124 (179)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTTB
T ss_pred CCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCccc
Confidence 799999999999999998876 33578899998865543
No 203
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.54 E-value=0.058 Score=46.48 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=74.2
Q ss_pred cCCCceEEEecCCCCcc--hhhHHHHHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcCC
Q 038482 6 KGQGPEILFLYGFPELR--YSRCHQTIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 6 ~g~~~~lv~ihG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
.|++|.+|..-|.=+.. -.|....-.|.++|+---..-.||=|.=...- .....|+.|+.+....+++.--.
T Consensus 445 ~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~ 524 (682)
T COG1770 445 DGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYT 524 (682)
T ss_pred CCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcC
Confidence 35667777766653322 23443344466778644444567755432211 11456888888887777765333
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 78 NDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 78 ~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
+++.++.+|-|-||+++-..+...|+.++++|.--|-+.+
T Consensus 525 ~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDv 564 (682)
T COG1770 525 SPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDV 564 (682)
T ss_pred CccceEEeccCchhHHHHHHHhhChhhhhheeecCCccch
Confidence 2368999999999999999999999999998877765544
No 204
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.50 E-value=0.016 Score=53.17 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCC-CCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGD-TDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~-S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
++|++.|+|..-+.......++..| ..|-||. +.... ...|++..|.-...-++.+... .+..++|
T Consensus 2122 e~~~~Ffv~pIEG~tt~l~~la~rl----------e~PaYglQ~T~~v--P~dSies~A~~yirqirkvQP~-GPYrl~G 2188 (2376)
T KOG1202|consen 2122 EEPPLFFVHPIEGFTTALESLASRL----------EIPAYGLQCTEAV--PLDSIESLAAYYIRQIRKVQPE-GPYRLAG 2188 (2376)
T ss_pred cCCceEEEeccccchHHHHHHHhhc----------CCcchhhhccccC--CcchHHHHHHHHHHHHHhcCCC-CCeeeec
Confidence 5799999999988877666655443 2234442 22222 3468899999988888888663 7899999
Q ss_pred eChHHHHHHHHHHhcc--ccccceeeeccCCC
Q 038482 87 HDSGTYMACFLCSFRA--NRIKALVNLSVVFN 116 (234)
Q Consensus 87 hS~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~ 116 (234)
.|+|+.++..+|.... +....+|++++++.
T Consensus 2189 YSyG~~l~f~ma~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2189 YSYGACLAFEMASQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred cchhHHHHHHHHHHHHhhcCCCcEEEecCchH
Confidence 9999999999996533 34566899987553
No 205
>PLN02209 serine carboxypeptidase
Probab=96.43 E-value=0.023 Score=47.51 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=67.6
Q ss_pred CCceEEEecCCCCcchhhHHHHH----------------HH-------HhcCCeEEeec-CCCCCCCCcccccccccHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQTI----------------AL-------ASLSYRAVAPD-LRGFGDTDELLEMTSYTCFH 63 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~----------------~l-------~~~g~~v~~~D-~~G~G~S~~~~~~~~~~~~~ 63 (234)
+.|.++++.|.++.++.+-.+.+ .| .+. .+++.+| ..|.|.|-........+-++
T Consensus 67 ~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDqPvGtGfSy~~~~~~~~~~~~ 145 (437)
T PLN02209 67 EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT-ANIIFLDQPVGSGFSYSKTPIERTSDTS 145 (437)
T ss_pred CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc-CcEEEecCCCCCCccCCCCCCCccCCHH
Confidence 36899999999998877643321 11 122 5799999 77899886443211122234
Q ss_pred HHHHHHHHHHhc----C-CCCCcEEEEEeChHHHHHHHHHHh----cc------ccccceeeeccCCCC
Q 038482 64 VIGDLIGLIDLV----A-PNDEKVFVVGHDSGTYMACFLCSF----RA------NRIKALVNLSVVFNP 117 (234)
Q Consensus 64 ~a~dl~~~~~~~----~-~~~~~~~l~GhS~Gg~ia~~~a~~----~p------~~v~~lvl~~~~~~~ 117 (234)
.++|+..++... . .+..++++.|.|.||.-+-.+|.. +. =.++++++.++...+
T Consensus 146 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 146 EVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHI 214 (437)
T ss_pred HHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccCh
Confidence 456666665543 1 112589999999999765555532 21 146788888876554
No 206
>PLN02934 triacylglycerol lipase
Probab=96.37 E-value=0.0069 Score=50.60 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
......+.++++.... .++++.|||+||++|..++.
T Consensus 305 ~~v~~~lk~ll~~~p~--~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEHKN--AKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHCCC--CeEEEeccccHHHHHHHHHH
Confidence 4456667777777666 79999999999999998874
No 207
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.29 E-value=0.027 Score=46.98 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCceEEEecCCCCcchhhHHHH---H-------------HH-------HhcCCeEEeec-CCCCCCCCcccccccccHHH
Q 038482 8 QGPEILFLYGFPELRYSRCHQT---I-------------AL-------ASLSYRAVAPD-LRGFGDTDELLEMTSYTCFH 63 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~---~-------------~l-------~~~g~~v~~~D-~~G~G~S~~~~~~~~~~~~~ 63 (234)
+.|.|+++.|.+|.++.+--+. + .| .+. .+++.+| ..|.|.|.........+-.+
T Consensus 65 ~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDqPvGtGfSy~~~~~~~~~d~~ 143 (433)
T PLN03016 65 EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIFLDQPVGSGFSYSKTPIDKTGDIS 143 (433)
T ss_pred cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEEecCCCCCCccCCCCCCCccCCHH
Confidence 3689999999988777542221 0 11 122 6799999 78999986543211111112
Q ss_pred HHHHHHHHHHh----cC-CCCCcEEEEEeChHHHHHHHHHHh----cc------ccccceeeeccCCCC
Q 038482 64 VIGDLIGLIDL----VA-PNDEKVFVVGHDSGTYMACFLCSF----RA------NRIKALVNLSVVFNP 117 (234)
Q Consensus 64 ~a~dl~~~~~~----~~-~~~~~~~l~GhS~Gg~ia~~~a~~----~p------~~v~~lvl~~~~~~~ 117 (234)
.++++..++.. .. ....++++.|.|.||..+-.+|.+ +. =.++++++-++...+
T Consensus 144 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~ 212 (433)
T PLN03016 144 EVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYM 212 (433)
T ss_pred HHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCc
Confidence 33555554443 21 112689999999999766555542 21 147788887775543
No 208
>PLN02802 triacylglycerol lipase
Probab=96.23 E-value=0.014 Score=48.77 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
+.+.+..+++.......++++.|||+||++|.+.|...
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 34445556655443113689999999999999888653
No 209
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.14 E-value=0.018 Score=49.63 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=62.6
Q ss_pred CceEEEecCCC---CcchhhHHH--HHHHHhcCCeEEeecCC----CCCCCCcccccccccHHHHHHHH---HHHHHhcC
Q 038482 9 GPEILFLYGFP---ELRYSRCHQ--TIALASLSYRAVAPDLR----GFGDTDELLEMTSYTCFHVIGDL---IGLIDLVA 76 (234)
Q Consensus 9 ~~~lv~ihG~~---~~~~~~~~~--~~~l~~~g~~v~~~D~~----G~G~S~~~~~~~~~~~~~~a~dl---~~~~~~~~ 76 (234)
-|++|+|||.+ +++..+... ...+...+.=|+.+.+| |+........+.-+-+.|+...+ .+-|...|
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 48899999995 343334222 11222222334444443 22222211112344555555444 44455556
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHh--ccccccceeeeccCCCC
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSF--RANRIKALVNLSVVFNP 117 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~~ 117 (234)
..+.+++|+|||.||..+..++.- ....+.++|.+++....
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~~ 234 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNALS 234 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccccc
Confidence 555899999999999999777652 23578888888877665
No 210
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.048 Score=38.45 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=56.6
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCe-EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYR-AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~-v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
..||.+-|++...+.+..++ +.+ ++. ++++|+..... +. |..+ . +.+.||++|
T Consensus 12 ~LIvyFaGwgtpps~v~HLi--lpe-N~dl~lcYDY~dl~l--------df-------DfsA------y--~hirlvAwS 65 (214)
T COG2830 12 HLIVYFAGWGTPPSAVNHLI--LPE-NHDLLLCYDYQDLNL--------DF-------DFSA------Y--RHIRLVAWS 65 (214)
T ss_pred EEEEEEecCCCCHHHHhhcc--CCC-CCcEEEEeehhhcCc--------cc-------chhh------h--hhhhhhhhh
Confidence 37788999999888777764 334 455 55677653211 11 1111 2 567889999
Q ss_pred hHHHHHHHHHHhccccccceeeeccCCCC--CCCCCc
Q 038482 89 SGTYMACFLCSFRANRIKALVNLSVVFNP--NTSVSN 123 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~--~~~~~~ 123 (234)
||-.+|-.+.... +++..+.+++...+ ...+.+
T Consensus 66 MGVwvAeR~lqg~--~lksatAiNGTgLpcDds~GIp 100 (214)
T COG2830 66 MGVWVAERVLQGI--RLKSATAINGTGLPCDDSFGIP 100 (214)
T ss_pred HHHHHHHHHHhhc--cccceeeecCCCCCccccCCCC
Confidence 9999998876543 47788888887776 344444
No 211
>PLN02324 triacylglycerol lipase
Probab=96.07 E-value=0.013 Score=47.98 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
+.+.+..+++......-++++.|||+||++|++.|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 3444666666554311369999999999999998864
No 212
>PLN02310 triacylglycerol lipase
Probab=96.04 E-value=0.018 Score=47.10 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCC--CCcEEEEEeChHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVAPN--DEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~--~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
..+.+..+++...-. ..++++.|||+||++|++.|..
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 344555666544211 1479999999999999988854
No 213
>PLN03037 lipase class 3 family protein; Provisional
Probab=96.02 E-value=0.018 Score=48.30 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCC--CCcEEEEEeChHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVAPN--DEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~--~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
..+++..+++..... +.++++.|||+||++|++.|..
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 345566666554311 1479999999999999998854
No 214
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=95.86 E-value=0.041 Score=45.92 Aligned_cols=106 Identities=20% Similarity=0.113 Sum_probs=69.6
Q ss_pred CceEEEecCCCCcchhhHHHHHH-------------------HHhcCCeEEeec-CCCCCCCCcccccccccHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIA-------------------LASLSYRAVAPD-LRGFGDTDELLEMTSYTCFHVIGDL 68 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~-------------------l~~~g~~v~~~D-~~G~G~S~~~~~~~~~~~~~~a~dl 68 (234)
.|.++++.|.+|.++.|-.+.+. +.+. -.++.+| .-|-|.|....+...-+.....+|+
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~ 179 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDV 179 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccccccccccchhccchhH
Confidence 67899999999999988766321 1121 3799999 7799998863322455666666776
Q ss_pred HHHHHhc-------CCCCCcEEEEEeChHHHHHHHHHHhccc---cccceeeeccCC
Q 038482 69 IGLIDLV-------APNDEKVFVVGHDSGTYMACFLCSFRAN---RIKALVNLSVVF 115 (234)
Q Consensus 69 ~~~~~~~-------~~~~~~~~l~GhS~Gg~ia~~~a~~~p~---~v~~lvl~~~~~ 115 (234)
..+.+.. .-...+.+|+|-|.||.-+-.+|..--+ ..++++++.+..
T Consensus 180 ~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvl 236 (498)
T COG2939 180 YSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVL 236 (498)
T ss_pred HHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeee
Confidence 6655433 1101589999999999777666643222 355666655433
No 215
>PLN02753 triacylglycerol lipase
Probab=95.74 E-value=0.02 Score=48.16 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCC---CCCcEEEEEeChHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVAP---NDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~~---~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
+.+.+..+++.... .+-++++.|||+||++|++.|..
T Consensus 293 Vl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 293 ILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 34445555555432 01589999999999999998853
No 216
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.62 E-value=0.13 Score=38.93 Aligned_cols=82 Identities=20% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCeEEeecCCC-CCC-CCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc------cccc
Q 038482 36 SYRAVAPDLRG-FGD-TDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN------RIKA 107 (234)
Q Consensus 36 g~~v~~~D~~G-~G~-S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~------~v~~ 107 (234)
|+++..+++|. ++- +.........|..+=++.+.+.++.....+++++++|+|+|+.++-..+.+.-+ ....
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 46677777775 111 111111134566777777777776632233799999999999999887765321 2345
Q ss_pred eeeeccCCCC
Q 038482 108 LVNLSVVFNP 117 (234)
Q Consensus 108 lvl~~~~~~~ 117 (234)
+|+++-+..+
T Consensus 82 fVl~gnP~rp 91 (225)
T PF08237_consen 82 FVLIGNPRRP 91 (225)
T ss_pred EEEecCCCCC
Confidence 7777655443
No 217
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.046 Score=39.00 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=63.1
Q ss_pred cccC-CCceEEEecCCCCcchhhHHH--HHHHH---hcC-CeEEeecCCCCCCCCcccc-cccccHHHHHHHHHH-HHHh
Q 038482 4 AEKG-QGPEILFLYGFPELRYSRCHQ--TIALA---SLS-YRAVAPDLRGFGDTDELLE-MTSYTCFHVIGDLIG-LIDL 74 (234)
Q Consensus 4 ~~~g-~~~~lv~ihG~~~~~~~~~~~--~~~l~---~~g-~~v~~~D~~G~G~S~~~~~-~~~~~~~~~a~dl~~-~~~~ 74 (234)
-..| .|.|||+++.-++.-..|..+ +.+|+ +.| ...++++ |-..-+-... .....-.+.-+.+.+ +++.
T Consensus 20 ~ryGHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~--gldsESf~a~h~~~adr~~rH~AyerYv~eE 97 (227)
T COG4947 20 NRYGHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLS--GLDSESFLATHKNAADRAERHRAYERYVIEE 97 (227)
T ss_pred hhccCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEec--ccchHhHhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 3445 467888888777766666443 33333 334 2344443 3322111110 011111111222333 3333
Q ss_pred cCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 75 VAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
.-+ .+..+-|-||||+.|..+..++|+.+.++|.+++....
T Consensus 98 alp--gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYda 138 (227)
T COG4947 98 ALP--GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDA 138 (227)
T ss_pred hcC--CCccccccchhhhhhhhhheeChhHhhhheeecceeeH
Confidence 333 57788899999999999999999999999999976643
No 218
>PLN02719 triacylglycerol lipase
Probab=95.57 E-value=0.025 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCC---CCCcEEEEEeChHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVAP---NDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~~---~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
+...+..+++.... ..-++++.|||+||++|.+.|..
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 33444555554432 01379999999999999998853
No 219
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.56 E-value=0.0087 Score=39.35 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=34.0
Q ss_pred ccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccc
Q 038482 193 KES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFIN 231 (234)
Q Consensus 193 ~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~ 231 (234)
+.| |+|.++.|+++ .+.+++.++++ +++.+++.||-..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s-~lvt~~g~gHg~~ 76 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGS-RLVTVDGAGHGVY 76 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCc-eEEEEeccCccee
Confidence 467 88999999997 67899999999 9999999999876
No 220
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=95.47 E-value=0.011 Score=48.07 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=79.2
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccc-ccccccHHHHHHHHHHHHHhcCCC-CCcEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL-EMTSYTCFHVIGDLIGLIDLVAPN-DEKVFVV 85 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-~~~~~~~~~~a~dl~~~~~~~~~~-~~~~~l~ 85 (234)
+.|+|+..-|+.-+..-.+.-...|.+ -+-+.+++|=+|.|.+.+ +....+++.-|.|...+++++..= +++++--
T Consensus 62 drPtV~~T~GY~~~~~p~r~Ept~Lld--~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWIST 139 (448)
T PF05576_consen 62 DRPTVLYTEGYNVSTSPRRSEPTQLLD--GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWIST 139 (448)
T ss_pred CCCeEEEecCcccccCccccchhHhhc--cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCceec
Confidence 468999999998865544332333333 358899999999998866 445679999999999998876311 3789999
Q ss_pred EeChHHHHHHHHHHhccccccceeeec
Q 038482 86 GHDSGTYMACFLCSFRANRIKALVNLS 112 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 112 (234)
|-|=||+.++.+=.-+|+.|.+.|-=-
T Consensus 140 G~SKGGmTa~y~rrFyP~DVD~tVaYV 166 (448)
T PF05576_consen 140 GGSKGGMTAVYYRRFYPDDVDGTVAYV 166 (448)
T ss_pred CcCCCceeEEEEeeeCCCCCCeeeeee
Confidence 999999999999888999999887633
No 221
>PLN02761 lipase class 3 family protein
Probab=95.39 E-value=0.031 Score=47.02 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcC----CCCCcEEEEEeChHHHHHHHHHH
Q 038482 64 VIGDLIGLIDLVA----PNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 64 ~a~dl~~~~~~~~----~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
+...+..+++..+ ...-++++.|||+||++|.+.|.
T Consensus 274 Vl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 274 VLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 3444555555442 10137999999999999998885
No 222
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.026 Score=48.25 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcCCC
Q 038482 7 GQGPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVAPN 78 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~~~ 78 (234)
|+.|.+|..+|..+-.- .|+.-...|.+.|+-+...|.||=|.=...- .....+++|+..-++.+++.--..
T Consensus 468 g~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~ 547 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQ 547 (712)
T ss_pred CCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCC
Confidence 45677777777654321 3444333455678877778999977543322 113457777777777777543222
Q ss_pred CCcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 79 DEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 79 ~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+++..+.|.|-||.++-.++.++|+.++++|+=-|...
T Consensus 548 ~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmD 585 (712)
T KOG2237|consen 548 PSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMD 585 (712)
T ss_pred ccceeEecccCccchhHHHhccCchHhhhhhhcCccee
Confidence 47899999999999999999999999988876555443
No 223
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=95.23 E-value=0.038 Score=44.61 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHh
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
..+.+++..+++...- -++.+-|||+||++|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~--~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPN--YSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCC--cEEEEecCChHHHHHHHHHHH
Confidence 4667777888887776 799999999999999988864
No 224
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=95.10 E-value=0.23 Score=38.66 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=58.9
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc--------cccc--------cHHHHHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE--------MTSY--------TCFHVIGDLIGLI 72 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~--------~~~~--------~~~~~a~dl~~~~ 72 (234)
-|.+++.||+++....-......+...++.++..+...+|.+..... .... .......+.....
T Consensus 49 ~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (299)
T COG1073 49 LPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLG 128 (299)
T ss_pred CceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHHHHh
Confidence 46899999999988776667777777778777776422222221110 0011 1111111111111
Q ss_pred HhcCCCCCcEEEEEeChHHHHHHHHHHhccc--cccceeeeccCC
Q 038482 73 DLVAPNDEKVFVVGHDSGTYMACFLCSFRAN--RIKALVNLSVVF 115 (234)
Q Consensus 73 ~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~ 115 (234)
. .. .+....|+++|+..+...+...+. .....++.+.+.
T Consensus 129 ~--~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 169 (299)
T COG1073 129 A--SL--GPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESL 169 (299)
T ss_pred h--hc--CcceEEEEEeeccchHHHhhcchhHHHhhcccceeecc
Confidence 1 12 578999999999999888877663 233445444433
No 225
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.04 E-value=0.067 Score=43.67 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.6
Q ss_pred cEEEEEeChHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|++++|+|.||++|.+.|.-.|..+.+++=-++.+.|
T Consensus 185 p~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p 221 (403)
T PF11144_consen 185 PKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALP 221 (403)
T ss_pred cEEEEecCcHHHHHHHHHhhCccceeEEEecCccccc
Confidence 8999999999999999999999999888877766654
No 226
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=95.02 E-value=0.12 Score=41.36 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=48.9
Q ss_pred eEEeecCC-CCCCCCcccccccccHHHHHHHHHHHHHhc----C-CCCCcEEEEEeChHHHHHHHHHHh----cc-----
Q 038482 38 RAVAPDLR-GFGDTDELLEMTSYTCFHVIGDLIGLIDLV----A-PNDEKVFVVGHDSGTYMACFLCSF----RA----- 102 (234)
Q Consensus 38 ~v~~~D~~-G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~----~-~~~~~~~l~GhS~Gg~ia~~~a~~----~p----- 102 (234)
+++-+|.| |-|.|-........+-+..|+|+..+++.. . ..+.++++.|-|.||.-+-.+|.+ ..
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~ 82 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEP 82 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCC
Confidence 68999988 888886543211112223446666555442 1 113789999999999766555542 21
Q ss_pred -ccccceeeeccCCCC
Q 038482 103 -NRIKALVNLSVVFNP 117 (234)
Q Consensus 103 -~~v~~lvl~~~~~~~ 117 (234)
=.++++++-++...+
T Consensus 83 ~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 83 PINLQGYMLGNPVTYM 98 (319)
T ss_pred ceeeeEEEeCCCCCCc
Confidence 146788877775544
No 227
>PLN02847 triacylglycerol lipase
Probab=94.85 E-value=0.059 Score=46.08 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.5
Q ss_pred CcEEEEEeChHHHHHHHHHHh
Q 038482 80 EKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
-+++++|||+||.+|..++..
T Consensus 251 YkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CeEEEeccChHHHHHHHHHHH
Confidence 589999999999999888754
No 228
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=94.57 E-value=0.11 Score=44.42 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcCCCC
Q 038482 8 QGPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVAPND 79 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~~~~ 79 (234)
+.|++|.--|.+.-+. .|.+......+.|...+..++||=|.=.+.- .-....++|++..+++++++---++
T Consensus 420 ~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitsp 499 (648)
T COG1505 420 ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSP 499 (648)
T ss_pred CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCH
Confidence 3577776666654332 4666666666668888889999977643221 1133456666666666665432225
Q ss_pred CcEEEEEeChHHHHHHHHHHhccccccceeeec
Q 038482 80 EKVFVVGHDSGTYMACFLCSFRANRIKALVNLS 112 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 112 (234)
+++-+-|-|-||.++-....++||.+.++|+--
T Consensus 500 e~lgi~GgSNGGLLvg~alTQrPelfgA~v~ev 532 (648)
T COG1505 500 EKLGIQGGSNGGLLVGAALTQRPELFGAAVCEV 532 (648)
T ss_pred HHhhhccCCCCceEEEeeeccChhhhCceeecc
Confidence 899999999999998888889999886666433
No 229
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=94.56 E-value=0.033 Score=32.89 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=11.4
Q ss_pred CCceEEEecCCCCcchhhH
Q 038482 8 QGPEILFLYGFPELRYSRC 26 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~ 26 (234)
.+|||+|.||+.+++..|-
T Consensus 42 ~k~pVll~HGL~~ss~~wv 60 (63)
T PF04083_consen 42 KKPPVLLQHGLLQSSDDWV 60 (63)
T ss_dssp T--EEEEE--TT--GGGGC
T ss_pred CCCcEEEECCcccChHHHH
Confidence 4789999999999999984
No 230
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=93.21 E-value=1.5 Score=28.56 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH--HHHHHHHHh
Q 038482 23 YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT--YMACFLCSF 100 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg--~ia~~~a~~ 100 (234)
..|..+.+.+..+|+..=.+.++.+|.+-...- ....-+.=..-+..+++...- .+++|||=|--. -+-..+|.+
T Consensus 11 nly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~-~~~~~~~K~~~i~~i~~~fP~--~kfiLIGDsgq~DpeiY~~ia~~ 87 (100)
T PF09949_consen 11 NLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLF-KSGAEEHKRDNIERILRDFPE--RKFILIGDSGQHDPEIYAEIARR 87 (100)
T ss_pred HHHHHHHHHHHhcCCCCCceEcccCCccccccc-cCCchhHHHHHHHHHHHHCCC--CcEEEEeeCCCcCHHHHHHHHHH
Confidence 344555566666678777777777765533220 011112334557777788887 899999998776 344556678
Q ss_pred ccccccceee
Q 038482 101 RANRIKALVN 110 (234)
Q Consensus 101 ~p~~v~~lvl 110 (234)
+|++|.++.+
T Consensus 88 ~P~~i~ai~I 97 (100)
T PF09949_consen 88 FPGRILAIYI 97 (100)
T ss_pred CCCCEEEEEE
Confidence 9999988754
No 231
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.2 Score=42.77 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHhcCCC-CCcEEEEEeChHHHHHHHHHHh-----ccc------cccceeeeccCCCC
Q 038482 60 TCFHVIGDLIGLIDLVAPN-DEKVFVVGHDSGTYMACFLCSF-----RAN------RIKALVNLSVVFNP 117 (234)
Q Consensus 60 ~~~~~a~dl~~~~~~~~~~-~~~~~l~GhS~Gg~ia~~~a~~-----~p~------~v~~lvl~~~~~~~ 117 (234)
++..-..-+.+-+.+.++- +++++.+||||||.++=.+... .|+ ..+++++++.+-..
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHrG 574 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHRG 574 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCCC
Confidence 3333334444444444443 3789999999999888655543 233 35677777765443
No 232
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.71 E-value=0.36 Score=40.43 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred cccccCC-Cce-EEEecCCCCcchhhH--HHHHHHHhcCCe-EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcC
Q 038482 2 HVAEKGQ-GPE-ILFLYGFPELRYSRC--HQTIALASLSYR-AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 2 ~~~~~g~-~~~-lv~ihG~~~~~~~~~--~~~~~l~~~g~~-v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
+|-..|+ +|| .|.+-|+=. ++-|. .+++.| |.. ++.-|.|=-|.+-=... +.+ -+...+-+.+.++.|+
T Consensus 280 yYFnPGD~KPPL~VYFSGyR~-aEGFEgy~MMk~L---g~PfLL~~DpRleGGaFYlGs-~ey-E~~I~~~I~~~L~~Lg 353 (511)
T TIGR03712 280 YYFNPGDFKPPLNVYFSGYRP-AEGFEGYFMMKRL---GAPFLLIGDPRLEGGAFYLGS-DEY-EQGIINVIQEKLDYLG 353 (511)
T ss_pred EecCCcCCCCCeEEeeccCcc-cCcchhHHHHHhc---CCCeEEeeccccccceeeeCc-HHH-HHHHHHHHHHHHHHhC
Confidence 4555675 454 478888854 33333 234444 333 44557776665432221 122 2456666778889999
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhc-cc
Q 038482 77 PNDEKVFVVGHDSGTYMACFLCSFR-AN 103 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a~~~-p~ 103 (234)
.+.+.++|-|-|||..=|+.|++.. |.
T Consensus 354 F~~~qLILSGlSMGTfgAlYYga~l~P~ 381 (511)
T TIGR03712 354 FDHDQLILSGLSMGTFGALYYGAKLSPH 381 (511)
T ss_pred CCHHHeeeccccccchhhhhhcccCCCc
Confidence 8767899999999999999999874 54
No 233
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=92.49 E-value=0.22 Score=38.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhc
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
.++.|-|||+||++|-++-.++
T Consensus 276 a~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 276 ARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred ceEEEeccccchHHHHHhcccc
Confidence 7899999999999998887765
No 234
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=92.49 E-value=0.22 Score=38.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhc
Q 038482 80 EKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
.++.|-|||+||++|-++-.++
T Consensus 276 a~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 276 ARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred ceEEEeccccchHHHHHhcccc
Confidence 7899999999999998887765
No 235
>PRK12467 peptide synthase; Provisional
Probab=91.40 E-value=0.99 Score=48.35 Aligned_cols=97 Identities=9% Similarity=-0.010 Sum_probs=71.2
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
+.+++.|...++...+.++...|... ..++.+..++.-.... ...++.+++....+.+...... .+..+.|+|+
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~~-~~~~~l~~~~~~~d~~----~~~~~~~~~~~y~~~~~~~~~~-~p~~l~g~s~ 3766 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEGD-RHVLGLTCRHLLDDGW----QDTSLQAMAVQYADYILWQQAK-GPYGLLGWSL 3766 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCCC-CcEEEEeccccccccC----CccchHHHHHHHHHHHHHhccC-CCeeeeeeec
Confidence 56999999999988888888888764 7888887765432222 2357788888888887765432 6799999999
Q ss_pred HHHHHHHHHHh---ccccccceeeec
Q 038482 90 GTYMACFLCSF---RANRIKALVNLS 112 (234)
Q Consensus 90 Gg~ia~~~a~~---~p~~v~~lvl~~ 112 (234)
||.++..++.. ..+.+.-+.+++
T Consensus 3767 g~~~a~~~~~~l~~~g~~~~~~~~~~ 3792 (3956)
T PRK12467 3767 GGTLARLVAELLEREGESEAFLGLFD 3792 (3956)
T ss_pred chHHHHHHHHHHHHcCCceeEEEEEe
Confidence 99999888864 334555555554
No 236
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=89.98 E-value=2 Score=31.95 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh----HHHHHHHHHHhc
Q 038482 29 TIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS----GTYMACFLCSFR 101 (234)
Q Consensus 29 ~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~----Gg~ia~~~a~~~ 101 (234)
.+.+...|. +|+..|.++. ..|+.+.+++.+.+++++.+. .++|+|+|. |..++-.+|++.
T Consensus 69 ~~~l~~~G~d~V~~~~~~~~---------~~~~~e~~a~al~~~i~~~~p---~lVL~~~t~~~~~grdlaprlAarL 134 (202)
T cd01714 69 LREALAMGADRAILVSDRAF---------AGADTLATAKALAAAIKKIGV---DLILTGKQSIDGDTGQVGPLLAELL 134 (202)
T ss_pred HHHHHHcCCCEEEEEecccc---------cCCChHHHHHHHHHHHHHhCC---CEEEEcCCcccCCcCcHHHHHHHHh
Confidence 333444444 6777765432 356788999999999988765 799999998 788998888774
No 237
>COG3933 Transcriptional antiterminator [Transcription]
Probab=89.59 E-value=3.1 Score=34.61 Aligned_cols=74 Identities=14% Similarity=0.028 Sum_probs=59.8
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
..||+.||.... +.....+..|.+. --+.++|+| -+.+.++..+.+.+-+++... ++=.++=.+|
T Consensus 110 ~vIiiAHG~sTA-SSmaevanrLL~~-~~~~aiDMP-----------Ldvsp~~vle~l~e~~k~~~~--~~GlllLVDM 174 (470)
T COG3933 110 KVIIIAHGYSTA-SSMAEVANRLLGE-EIFIAIDMP-----------LDVSPSDVLEKLKEYLKERDY--RSGLLLLVDM 174 (470)
T ss_pred eEEEEecCcchH-HHHHHHHHHHhhc-cceeeecCC-----------CcCCHHHHHHHHHHHHHhcCc--cCceEEEEec
Confidence 488999999654 5566778887776 468999998 678999999999999999888 7767778899
Q ss_pred HHHHHHHHH
Q 038482 90 GTYMACFLC 98 (234)
Q Consensus 90 Gg~ia~~~a 98 (234)
|....+.-.
T Consensus 175 GSL~~f~~~ 183 (470)
T COG3933 175 GSLTSFGSI 183 (470)
T ss_pred chHHHHHHH
Confidence 997765544
No 238
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=89.04 E-value=0.15 Score=37.29 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=28.2
Q ss_pred cccc-eE-eecCCcccc-------ccccccCCCCC-ceeEEeCCCCCccc
Q 038482 192 LKES-TI-TKGVKEYIH-------KGEFRSDVPLL-EEVTIMEGVGHFIN 231 (234)
Q Consensus 192 i~~P-ll-i~G~~D~~~-------~~~~~~~~~~~-~~~~~~~~agH~~~ 231 (234)
|+.. |+ |-||.|.|+ ...++..+|.. +..++.+||||+-.
T Consensus 132 I~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGl 181 (202)
T PF06850_consen 132 IRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGL 181 (202)
T ss_pred cccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeec
Confidence 4443 56 999999997 34455556644 57788999999853
No 239
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=87.29 E-value=1.2 Score=37.96 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHhcCCeEEeecCCCCCCCCc----ccccc--------cccHHHHHHHHHHHHHhc-CCCCCcEEEEEeChHHHHH
Q 038482 28 QTIALASLSYRAVAPDLRGFGDTDE----LLEMT--------SYTCFHVIGDLIGLIDLV-APNDEKVFVVGHDSGTYMA 94 (234)
Q Consensus 28 ~~~~l~~~g~~v~~~D~~G~G~S~~----~~~~~--------~~~~~~~a~dl~~~~~~~-~~~~~~~~l~GhS~Gg~ia 94 (234)
+...+.. ||.+..-|- ||..+.. ....+ ..++.+++....++++.. +-.++.-...|-|.||.-+
T Consensus 52 ~~~~~~~-G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqg 129 (474)
T PF07519_consen 52 MATALAR-GYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQG 129 (474)
T ss_pred cchhhhc-CeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchH
Confidence 3445555 899999994 7766543 11111 124445555556666554 3323778999999999999
Q ss_pred HHHHHhccccccceeeeccCCC
Q 038482 95 CFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 95 ~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+..|.|+|+.+.+++.-+|...
T Consensus 130 l~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 130 LMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHHhChhhcCeEEeCCchHH
Confidence 9999999999999998877543
No 240
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=5.5 Score=33.91 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=31.6
Q ss_pred hcCCCCCcEEEEEeChHHHHHHHHHHhc-----cccccceeeeccCCCC
Q 038482 74 LVAPNDEKVFVVGHDSGTYMACFLCSFR-----ANRIKALVNLSVVFNP 117 (234)
Q Consensus 74 ~~~~~~~~~~l~GhS~Gg~ia~~~a~~~-----p~~v~~lvl~~~~~~~ 117 (234)
.+|. +|+.|+|+|+|+.+.+...... -+.|..+++++.|...
T Consensus 443 ~qG~--RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~ 489 (633)
T KOG2385|consen 443 SQGN--RPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPT 489 (633)
T ss_pred ccCC--CceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccC
Confidence 3466 9999999999999988666532 2357888999876643
No 241
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=83.74 E-value=3.7 Score=33.43 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=31.4
Q ss_pred cccc-eEeecCCcccc----ccccccCCCCCceeEEeCCCCCccc
Q 038482 192 LKES-TITKGVKEYIH----KGEFRSDVPLLEEVTIMEGVGHFIN 231 (234)
Q Consensus 192 i~~P-lli~G~~D~~~----~~~~~~~~~~~~~~~~~~~agH~~~ 231 (234)
+..| .|+.|..|.+. .....+.+|+.+-+.++|+..|...
T Consensus 328 LalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~ 372 (507)
T COG4287 328 LALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI 372 (507)
T ss_pred ccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh
Confidence 7888 77777777664 5667788898878899999999753
No 242
>PRK10279 hypothetical protein; Provisional
Probab=82.06 E-value=1.7 Score=34.61 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc
Q 038482 69 IGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 69 ~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
.+.++..++ ..-.+.|.|+|+.++..||....+
T Consensus 24 L~aL~E~gi--~~d~i~GtS~GAlvga~yA~g~~~ 56 (300)
T PRK10279 24 INALKKVGI--EIDIVAGCSIGSLVGAAYACDRLS 56 (300)
T ss_pred HHHHHHcCC--CcCEEEEEcHHHHHHHHHHcCChH
Confidence 445556788 778999999999999999976543
No 243
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=81.43 E-value=2.6 Score=33.64 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 23 YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
.+|+.+++.|... -.-++++ | |.... -..+. +.+.++..++ ..-.++|.|+|+.++..++..+
T Consensus 2 ~d~~rl~r~l~~~-~~gLvL~--G-GG~RG---------~ahiG-vL~aLee~gi--~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 2 SDFSRLARVLTGN-SIALVLG--G-GGARG---------CAHIG-VIKALEEAGI--PVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred ChHHHHHHHhcCC-CEEEEEC--C-hHHHH---------HHHHH-HHHHHHHcCC--CCCEEEEECHHHHHHHHHHcCC
Confidence 4678888888875 3445553 2 11100 11233 4455566688 7778999999999999999864
No 244
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=80.96 E-value=11 Score=31.85 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=64.7
Q ss_pred CceEEEecCCCCcchhhHHHHHHHH-----hcC-------------CeEEeecC-CCCCCCCccccc-ccccHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALA-----SLS-------------YRAVAPDL-RGFGDTDELLEM-TSYTCFHVIGDL 68 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~-----~~g-------------~~v~~~D~-~G~G~S~~~~~~-~~~~~~~~a~dl 68 (234)
+|.||++.|.+|=++.- .+..++- ..| -+++.+|. .|-|.|-..... ...+-+..|+|.
T Consensus 73 dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~ 151 (454)
T KOG1282|consen 73 DPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDN 151 (454)
T ss_pred CCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHH
Confidence 68899999998755443 3332221 111 36888884 477777644410 113445666776
Q ss_pred HHHHHhc-----CCCCCcEEEEEeChHHHHHHHHHH----hcc------ccccceeeeccCCCC
Q 038482 69 IGLIDLV-----APNDEKVFVVGHDSGTYMACFLCS----FRA------NRIKALVNLSVVFNP 117 (234)
Q Consensus 69 ~~~~~~~-----~~~~~~~~l~GhS~Gg~ia~~~a~----~~p------~~v~~lvl~~~~~~~ 117 (234)
..++... .....++.+.|-|.+|..+-.+|. .+. -.++++++-++...+
T Consensus 152 ~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 152 YEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDP 215 (454)
T ss_pred HHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCc
Confidence 6665432 111379999999999966655553 232 146788877776654
No 245
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=80.49 E-value=13 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeec
Q 038482 7 GQGPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D 43 (234)
++.+.+|++-|+.+++..= ..+.+.|.+.|++++.+|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4567899999999887543 445667888899999998
No 246
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=80.41 E-value=1.5 Score=35.11 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
+.++++..|+ ++-.++|||+|=+.|+.++
T Consensus 74 l~~~l~~~Gi--~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 74 LARLLRSWGI--KPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHTTH--CESEEEESTTHHHHHHHHT
T ss_pred hhhhhccccc--ccceeeccchhhHHHHHHC
Confidence 4566678899 9999999999998887665
No 247
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=80.21 E-value=2.6 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
+.++++..|+ ++-.++|||+|-+.|+.++.
T Consensus 72 ~~~~l~~~Gi--~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 72 LARLWRSWGV--RPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHcCC--cccEEEecCHHHHHHHHHhC
Confidence 3455677899 89999999999998877663
No 248
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=80.13 E-value=3.1 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc
Q 038482 70 GLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 70 ~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
+.++..++ ..-.+.|-|.|+.++..++...+.
T Consensus 18 ~aL~e~gi--~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 18 KALRERGP--LIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred HHHHHcCC--CCCEEEEECHHHHHHHHHHcCCCH
Confidence 34445578 777999999999999999987543
No 249
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=80.06 E-value=26 Score=29.16 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=65.3
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc---------------------cccccHHHHHHHH
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE---------------------MTSYTCFHVIGDL 68 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~---------------------~~~~~~~~~a~dl 68 (234)
|+|+++--+-.=...+..+.+.+.+.|.+++.+|.-=.|.+..+.+ .....++.+++-+
T Consensus 2 ~tI~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga 81 (403)
T PF06792_consen 2 KTIAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGA 81 (403)
T ss_pred CEEEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHH
Confidence 4555554444444567777778888899999999644433332210 0112345556666
Q ss_pred HHHHHhc----CCCCCcEEEEEeChHHHHHHHHHHhccccccceeee
Q 038482 69 IGLIDLV----APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNL 111 (234)
Q Consensus 69 ~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~ 111 (234)
..++..+ .+ .-++-+|-|.|..++.......|=-+-++++-
T Consensus 82 ~~~v~~l~~~g~i--~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVS 126 (403)
T PF06792_consen 82 ARFVSDLYDEGKI--DGVIGIGGSGGTALATAAMRALPIGFPKLMVS 126 (403)
T ss_pred HHHHHHHHhcCCc--cEEEEecCCccHHHHHHHHHhCCCCCCeEEEE
Confidence 6666554 35 56888999999999999998888777777653
No 250
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=79.52 E-value=3.2 Score=30.45 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc
Q 038482 71 LIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 71 ~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
.++..++ ..-.+.|-|.|+.++..++...+
T Consensus 20 ~L~e~~~--~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 20 ALEEAGI--LKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHcCC--CcceEEEECHHHHHHHHHHcCCC
Confidence 3445677 67799999999999999998643
No 251
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=79.33 E-value=9 Score=33.32 Aligned_cols=99 Identities=13% Similarity=-0.033 Sum_probs=57.1
Q ss_pred eEEEecCCCC------cchhh-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHH---HhcCCCCC
Q 038482 11 EILFLYGFPE------LRYSR-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLI---DLVAPNDE 80 (234)
Q Consensus 11 ~lv~ihG~~~------~~~~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~---~~~~~~~~ 80 (234)
-|+=.||.|- +.+.| +.++.+| |+.|+.+|+- -.|..+.+..+++.-=...-++ ..+|-+++
T Consensus 398 li~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYS-----LAPEaPFPRaleEv~fAYcW~inn~allG~TgE 469 (880)
T KOG4388|consen 398 LIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYS-----LAPEAPFPRALEEVFFAYCWAINNCALLGSTGE 469 (880)
T ss_pred EEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeec-----cCCCCCCCcHHHHHHHHHHHHhcCHHHhCcccc
Confidence 3455888864 22222 3344333 7899999963 2333334445555443333333 55677779
Q ss_pred cEEEEEeChHHHHHHHHHHhc---ccc-ccceeeeccCCCC
Q 038482 81 KVFVVGHDSGTYMACFLCSFR---ANR-IKALVNLSVVFNP 117 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~---p~~-v~~lvl~~~~~~~ 117 (234)
+++++|-|-||.+.+-.+++. .=| -.++++.=++...
T Consensus 470 riv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ptl~ 510 (880)
T KOG4388|consen 470 RIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPTLL 510 (880)
T ss_pred eEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChhhc
Confidence 999999999998766555442 112 2466665554443
No 252
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=78.83 E-value=3.7 Score=32.11 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
+.+.+++.++ ..-.+.|.|+|+.++..||...
T Consensus 28 VL~aLeE~gi--~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGI--PIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCC--CccEEEEECHHHHHHHHHHcCC
Confidence 3444567788 6668999999999999999763
No 253
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=78.52 E-value=12 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=20.5
Q ss_pred CCceEEEecCCCCcchhh--HHHHHHHHhcC
Q 038482 8 QGPEILFLYGFPELRYSR--CHQTIALASLS 36 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~--~~~~~~l~~~g 36 (234)
++|-|+-+||++|++..| +-+++.|-..|
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 456677799999999888 34456654444
No 254
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=77.98 E-value=3.4 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
+.+.++..++ ++..++|||+|=+.|+.++.
T Consensus 66 l~~~l~~~g~--~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 66 AWRALLALLP--RPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHHhcCC--CCcEEeecCHHHHHHHHHhC
Confidence 3455677789 89999999999988877663
No 255
>PRK02399 hypothetical protein; Provisional
Probab=77.20 E-value=35 Score=28.41 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=62.2
Q ss_pred ceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCccc-------------------c--cccccHHHHHHH
Q 038482 10 PEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELL-------------------E--MTSYTCFHVIGD 67 (234)
Q Consensus 10 ~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-------------------~--~~~~~~~~~a~d 67 (234)
+.|+++ |..-+. ..+..+.+.+.++|..|+.+|.-..|....+. . .....++.+++-
T Consensus 4 ~~I~ii-gT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~g 82 (406)
T PRK02399 4 KRIYIA-GTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEG 82 (406)
T ss_pred CEEEEE-eccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHH
Confidence 455555 444443 45555666677778999999984333211110 0 011233556666
Q ss_pred HHHHHHhc----CCCCCcEEEEEeChHHHHHHHHHHhccccccceeee
Q 038482 68 LIGLIDLV----APNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNL 111 (234)
Q Consensus 68 l~~~~~~~----~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~ 111 (234)
+..+++.+ .+ .-++-+|-|+|..++.......|=-+-++++-
T Consensus 83 a~~~v~~L~~~g~i--~gviglGGs~GT~lat~aMr~LPiG~PKlmVS 128 (406)
T PRK02399 83 AAAFVRELYERGDV--AGVIGLGGSGGTALATPAMRALPIGVPKLMVS 128 (406)
T ss_pred HHHHHHHHHhcCCc--cEEEEecCcchHHHHHHHHHhCCCCCCeEEEE
Confidence 66666543 35 67899999999999999998888777777654
No 256
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=76.59 E-value=5.2 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
++..++ +.-.+.|.|.|+.++..+|...
T Consensus 22 L~e~gi--~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 22 LLEMGL--EPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHcCC--CceEEEEeCHHHHHHHHHHcCC
Confidence 344577 6678999999999999999754
No 257
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=76.42 E-value=11 Score=30.24 Aligned_cols=107 Identities=16% Similarity=0.044 Sum_probs=68.4
Q ss_pred CceEEEecCCCCcchh----hHHH-----------HHHHHhcCCeEEeec-CCCCCCCCcccc-cccccHHHHHHHHHHH
Q 038482 9 GPEILFLYGFPELRYS----RCHQ-----------TIALASLSYRAVAPD-LRGFGDTDELLE-MTSYTCFHVIGDLIGL 71 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~----~~~~-----------~~~l~~~g~~v~~~D-~~G~G~S~~~~~-~~~~~~~~~a~dl~~~ 71 (234)
.|-.+.+.|.++.+.. |.++ ...|.. -.++.+| .-|.|.|--... ...-+....|.|+.++
T Consensus 31 ~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~l 108 (414)
T KOG1283|consen 31 RPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVEL 108 (414)
T ss_pred CCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeeecCcccccccHHHHHHHHHHH
Confidence 4667889988775543 3222 122333 4678888 457777755432 1234678889999999
Q ss_pred HHhcCCC-----CCcEEEEEeChHHHHHHHHHHhccc---------cccceeeeccCCCC
Q 038482 72 IDLVAPN-----DEKVFVVGHDSGTYMACFLCSFRAN---------RIKALVNLSVVFNP 117 (234)
Q Consensus 72 ~~~~~~~-----~~~~~l~GhS~Gg~ia~~~a~~~p~---------~v~~lvl~~~~~~~ 117 (234)
++.+-.. -.|++++-.|.||-++..++...-. .+.+++|=++...|
T Consensus 109 lk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP 168 (414)
T KOG1283|consen 109 LKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISP 168 (414)
T ss_pred HHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccCh
Confidence 9876211 1589999999999998888754332 24566666665544
No 258
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=75.79 E-value=37 Score=28.39 Aligned_cols=76 Identities=8% Similarity=0.005 Sum_probs=43.0
Q ss_pred CceEEEecCCCCcchhh-----HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE
Q 038482 9 GPEILFLYGFPELRYSR-----CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF 83 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~ 83 (234)
+.|+|+++.+. ..+| ...+..|.+.|+.|+-++ +|+=.....-...-.+.++.+..+...+....++++++.
T Consensus 116 ~~pvvi~Pamn--~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vl 192 (399)
T PRK05579 116 TAPVLVAPAMN--TQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVL 192 (399)
T ss_pred CCCEEEEeCCC--hhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEE
Confidence 45788887653 3344 456778888888877554 343111111111234667777777776644333336677
Q ss_pred EEEe
Q 038482 84 VVGH 87 (234)
Q Consensus 84 l~Gh 87 (234)
+-|-
T Consensus 193 ITgG 196 (399)
T PRK05579 193 ITAG 196 (399)
T ss_pred EeCC
Confidence 7676
No 259
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=75.59 E-value=21 Score=23.74 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=46.4
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 11 EILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
-||.-|| .-+......++.+... .-.+.++++. ...+.+++.+.+.+.++.... ++.+.++-==.
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~-----------~~~~~~~~~~~l~~~i~~~~~-~~~vlil~Dl~ 67 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY-----------PDESIEDFEEKLEEAIEELDE-GDGVLILTDLG 67 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET-----------TTSCHHHHHHHHHHHHHHCCT-TSEEEEEESST
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc-----------CCCCHHHHHHHHHHHHHhccC-CCcEEEEeeCC
Confidence 3677898 5555666667776665 2477788764 346888999999999988764 14555555444
Q ss_pred HHHHH
Q 038482 90 GTYMA 94 (234)
Q Consensus 90 Gg~ia 94 (234)
||...
T Consensus 68 ggsp~ 72 (116)
T PF03610_consen 68 GGSPF 72 (116)
T ss_dssp TSHHH
T ss_pred CCccc
Confidence 44433
No 260
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=75.36 E-value=14 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.097 Sum_probs=27.3
Q ss_pred CCCceEEEecCCCCcchh--h-HHHHHHHHhcCCeEEeecC
Q 038482 7 GQGPEILFLYGFPELRYS--R-CHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~--~-~~~~~~l~~~g~~v~~~D~ 44 (234)
|.++.|.||+-.+.+... | ....+.|.+.|+.+.-+++
T Consensus 30 g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l 70 (224)
T COG3340 30 GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHL 70 (224)
T ss_pred CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeec
Confidence 346799999988877655 3 4556678888877777764
No 261
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=75.12 E-value=4.8 Score=32.07 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
+.+.++..++ ..-.+.|-|+|+.++..+|..+.
T Consensus 29 Vl~aL~e~gi--~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAGI--PIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcCC--CccEEEecCHHHHHHHHHHcCCC
Confidence 3455567788 88899999999999999998643
No 262
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=74.98 E-value=4.2 Score=31.89 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.8
Q ss_pred HHHHHhcC-CCCCcEEEEEeChHHHHHHHHHH
Q 038482 69 IGLIDLVA-PNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 69 ~~~~~~~~-~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.+.++..+ + .+..++|||+|=+.|+.++-
T Consensus 73 ~~~l~~~g~i--~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 73 YLKLKEQGGL--KPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHHcCCC--CCCEEeecCHHHHHHHHHhC
Confidence 34455666 8 89999999999988877764
No 263
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=74.92 E-value=3.3 Score=34.66 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccce
Q 038482 66 GDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKAL 108 (234)
Q Consensus 66 ~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~l 108 (234)
..+.++ ...++ .+-++.|-|.|+.+|..++.+.++.+..+
T Consensus 90 GVLkaL-~E~gl--~p~vIsGTSaGAivAal~as~~~eel~~~ 129 (421)
T cd07230 90 GVLKAL-FEANL--LPRIISGSSAGSIVAAILCTHTDEEIPEL 129 (421)
T ss_pred HHHHHH-HHcCC--CCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 334443 34466 66789999999999999998777665443
No 264
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=74.69 E-value=12 Score=28.60 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=47.8
Q ss_pred CCceEEEecCCCC--cchhh-HHHHHHHHhcCCeEEeecCCCCCCCCccc--------ccccccHHHHHH--HHHHHHHh
Q 038482 8 QGPEILFLYGFPE--LRYSR-CHQTIALASLSYRAVAPDLRGFGDTDELL--------EMTSYTCFHVIG--DLIGLIDL 74 (234)
Q Consensus 8 ~~~~lv~ihG~~~--~~~~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~--------~~~~~~~~~~a~--dl~~~~~~ 74 (234)
++|.|+||+-... +...| +.+.+.|.+.|+.+..++...-- ...-. +-+...+-...+ .+.+.++.
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~-~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADP-VAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhh-HHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHH
Confidence 5689999999884 34444 44566788889998888765210 00000 001112222211 13333332
Q ss_pred cCCCCCcEEEEEeChHHHHHHHH
Q 038482 75 VAPNDEKVFVVGHDSGTYMACFL 97 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~Gg~ia~~~ 97 (234)
.-. +-..++|.|-|++++...
T Consensus 109 ~~~--~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 109 AVK--NGTPYIGWSAGANVAGPT 129 (233)
T ss_pred HHH--CCCEEEEECHHHHhhhcc
Confidence 212 347899999999886443
No 265
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=73.24 E-value=6.9 Score=28.24 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHhcCCCCCcEEEEEeChHHHHHHHHHHhccc
Q 038482 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
++..++ ..-.+.|-|.|+.++..++...+.
T Consensus 22 L~e~g~--~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 22 LEEEGI--EIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred HHHCCC--CeeEEEEeCHHHHHHHHHHcCCCH
Confidence 345577 666899999999999999987543
No 266
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=72.86 E-value=9.9 Score=28.50 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCceEEEecCCCCcchhh-HHHHHHHHhc-CCeEEeecCCCCCCCCccc---c------cccccHHHHHHH-----HHHH
Q 038482 8 QGPEILFLYGFPELRYSR-CHQTIALASL-SYRAVAPDLRGFGDTDELL---E------MTSYTCFHVIGD-----LIGL 71 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~-~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~---~------~~~~~~~~~a~d-----l~~~ 71 (234)
+.+.|++|+-.......| ..+.+.|.+. |+.+..++... ..+... . +.. +...+.+. +.++
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~GG-~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGGG-NTFNLLAQWREHGLDAI 106 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECCc-hHHHHHHHHHHcCHHHH
Confidence 467899999888865444 5566778888 88888887543 111011 0 000 11111111 3333
Q ss_pred HHhcCCCCCcEEEEEeChHHHHHHH
Q 038482 72 IDLVAPNDEKVFVVGHDSGTYMACF 96 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~Gg~ia~~ 96 (234)
++..-. +...++|.|.|.++...
T Consensus 107 l~~~~~--~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 107 LKAALE--RGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHH--CCCEEEEECHhHHhhCC
Confidence 433322 46889999999988765
No 267
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=72.01 E-value=7.2 Score=29.29 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc
Q 038482 70 GLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 70 ~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
..++..++ ..-.+.|.|.|+.++..++...+
T Consensus 18 ~aL~e~g~--~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 18 KALAEAGI--EPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHcCC--CCCEEEEECHHHHHHHHHHcCCc
Confidence 33445577 66699999999999999998774
No 268
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=71.78 E-value=4.5 Score=33.73 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcccccccee
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lv 109 (234)
.+..+.++.+ .++ .+-++.|-|.|+.+|..+|.+.++.+..++
T Consensus 82 h~GVlkaL~e-~gl--lp~iI~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 82 HFGVVKALLD-ADL--LPNVISGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred HHHHHHHHHh-CCC--CCCEEEEECHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555444 467 677899999999999999997777766554
No 269
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=71.49 E-value=41 Score=26.42 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=49.2
Q ss_pred ceEEEecCCCCcch------hhHHHHHHH-HhcCCeEEeecCCCCCCC--------Cccc-----ccccccHHHHHHHHH
Q 038482 10 PEILFLYGFPELRY------SRCHQTIAL-ASLSYRAVAPDLRGFGDT--------DELL-----EMTSYTCFHVIGDLI 69 (234)
Q Consensus 10 ~~lv~ihG~~~~~~------~~~~~~~~l-~~~g~~v~~~D~~G~G~S--------~~~~-----~~~~~~~~~~a~dl~ 69 (234)
.-+||+=|.+.+.. +-..+.+.+ ...+-+.+++=.+|-|-. .... ......+++-+.+..
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 34677777765433 234444555 222234555666888872 1111 001123444444333
Q ss_pred -HHHHhcCCCCCcEEEEEeChHHHHHHHHHHh
Q 038482 70 -GLIDLVAPNDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 70 -~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
.+++.... +.++.++|+|-|++.|-.++..
T Consensus 82 ~~l~~~~~~-gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 82 RFLSKNYEP-GDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHhccCC-cceEEEEecCccHHHHHHHHHH
Confidence 33344422 2679999999999999888843
No 270
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=70.25 E-value=59 Score=27.09 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=54.6
Q ss_pred ceEEEecCCCCc---chhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-cCCCCCcEEEE
Q 038482 10 PEILFLYGFPEL---RYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-VAPNDEKVFVV 85 (234)
Q Consensus 10 ~~lv~ihG~~~~---~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~~~~~~~~~l~ 85 (234)
.|+|+++.+... +......+..|.+.|+.|+-+. +|+=.+.........+.+++...+...+.. -..+++++.+.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~-~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit 191 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPD-SGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRVLIT 191 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCC-CcccccccccCCCCCCHHHHHHHHHHHHhhccccCCceEEEe
Confidence 577777765332 2233566778888787666554 332211111111245677787777777644 11223667666
Q ss_pred Ee------------------ChHHHHHHHHHHhccccccceeeeccC
Q 038482 86 GH------------------DSGTYMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 86 Gh------------------S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
|- .||..++..++.+ -..++++...
T Consensus 192 ~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~----Ga~V~~~~g~ 234 (390)
T TIGR00521 192 AGPTREPIDPVRFISNLSSGKMGLALAEAAYKR----GADVTLITGP 234 (390)
T ss_pred cCCccCCCCceeeecCCCcchHHHHHHHHHHHC----CCEEEEeCCC
Confidence 66 3566777666544 3345555543
No 271
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=68.50 E-value=9.5 Score=29.64 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHhcCCCCC-cEEEEEeChHHHHHHHHHHhcccc
Q 038482 70 GLIDLVAPNDE-KVFVVGHDSGTYMACFLCSFRANR 104 (234)
Q Consensus 70 ~~~~~~~~~~~-~~~l~GhS~Gg~ia~~~a~~~p~~ 104 (234)
+.+...++ . -=.++|.|.|+.++..++...+.+
T Consensus 18 ~al~e~~~--~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 18 DAFLEAGI--RPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHcCC--CCCCEEEEECHHHHhHHHHHhCCcch
Confidence 33444566 5 448999999999999999876554
No 272
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=68.29 E-value=11 Score=27.04 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=22.2
Q ss_pred HHhcCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 72 IDLVAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
++..++ ..-.+.|.|.|+.++..++...
T Consensus 22 L~~~~~--~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 22 LEEAGI--PIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHcCC--CeeEEEEECHHHHHHHHHHcCC
Confidence 344566 5668999999999999998764
No 273
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=68.03 E-value=11 Score=32.80 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=55.8
Q ss_pred CceEEEecCCCCcchhhHHHHHH------HH--hcCCeEEeecC----CCCCCCCccc-ccccccHHHHHHHHHHHHHhc
Q 038482 9 GPEILFLYGFPELRYSRCHQTIA------LA--SLSYRAVAPDL----RGFGDTDELL-EMTSYTCFHVIGDLIGLIDLV 75 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~------l~--~~g~~v~~~D~----~G~G~S~~~~-~~~~~~~~~~a~dl~~~~~~~ 75 (234)
.-||-+-=|.+-.......+.+. |+ +-|=.|+.-.- +=||.-+.+. .......+.+...+.+++..
T Consensus 258 ~ipLTLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~i~e- 336 (655)
T COG3887 258 NIPLTLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDIIKE- 336 (655)
T ss_pred CcceEEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHHHhh-
Confidence 34565555665555444444222 22 21333444322 2255444443 11223445555666666654
Q ss_pred CCCCCcEEEEEe------ChHHHHHHHHHHhccccccceeeeccC
Q 038482 76 APNDEKVFVVGH------DSGTYMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 76 ~~~~~~~~l~Gh------S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
. ++++++|| +.|+++++..-+..-.+ .+.++++|.
T Consensus 337 -~--d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~ 377 (655)
T COG3887 337 -S--DNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPE 377 (655)
T ss_pred -c--CcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECcc
Confidence 4 78999999 89999998877765444 567777753
No 274
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=67.22 E-value=6.8 Score=31.38 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccc
Q 038482 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRI 105 (234)
Q Consensus 65 a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v 105 (234)
+..+.++. ..++ .+-++.|-|.|+.+|..++.+.++.+
T Consensus 84 ~GVlkaL~-e~gl--~p~~i~GsSaGAivaa~~~~~t~~El 121 (323)
T cd07231 84 VGVVRTLV-EHQL--LPRVIAGSSVGSIVCAIIATRTDEEL 121 (323)
T ss_pred HHHHHHHH-HcCC--CCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 34444444 4477 67789999999999999987655433
No 275
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=67.03 E-value=24 Score=25.39 Aligned_cols=57 Identities=7% Similarity=0.006 Sum_probs=41.8
Q ss_pred cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccc-----cccccHHHHHHHHHHHHHhcCC
Q 038482 21 LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLE-----MTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 21 ~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
+...|+...+.+.+.|++.+++-.-|++...-.+. .-.....+.++.+.+..+..|.
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gm 79 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGM 79 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCC
Confidence 45679999999999999999988888876543221 0122445788888888888888
No 276
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=67.01 E-value=25 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.9
Q ss_pred ceEEEecCCCCcchh--hHHHHHHHHhcCCeEEe--ecCCCCCCCCc
Q 038482 10 PEILFLYGFPELRYS--RCHQTIALASLSYRAVA--PDLRGFGDTDE 52 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~--~~~~~~~l~~~g~~v~~--~D~~G~G~S~~ 52 (234)
.-|++|+|+|++... ++...+.++++ |.|++ +++-++|...+
T Consensus 36 aIvfiI~GfG~dan~~~~d~~r~~iA~~-fnvv~I~V~YHCf~~R~q 81 (403)
T PF11144_consen 36 AIVFIIPGFGADANSNYLDFMREYIAKK-FNVVVISVNYHCFCNRPQ 81 (403)
T ss_pred EEEEEeCCcCCCcchHHHHHHHHHHHHh-CCEEEEEeeeeheeeccc
Confidence 356779999998763 45667778876 76665 46777765543
No 277
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=36 Score=27.80 Aligned_cols=107 Identities=7% Similarity=-0.091 Sum_probs=67.3
Q ss_pred CceEEEecCCCCcchhh-HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 9 GPEILFLYGFPELRYSR-CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~-~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
..+||++=||.+..+.| ...+....+.||.++.+-.|-+-..-.... ...++.....-+..++.....++.++++--+
T Consensus 38 ~k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~-~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~F 116 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASR-RILSLSLASTRLSELLSDYNSDPCPIIFHVF 116 (350)
T ss_pred cccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCccccccccccc-ccchhhHHHHHHHHHhhhccCCcCceEEEEe
Confidence 33777777777766655 445666777789999998886654433331 3456666677788888776643367888899
Q ss_pred ChHHHHHHHHH---H-hc-cc---cccceeeeccCCC
Q 038482 88 DSGTYMACFLC---S-FR-AN---RIKALVNLSVVFN 116 (234)
Q Consensus 88 S~Gg~ia~~~a---~-~~-p~---~v~~lvl~~~~~~ 116 (234)
|+||...+... . ++ |. .+.+++..+.+..
T Consensus 117 S~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~ 153 (350)
T KOG2521|consen 117 SGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPAR 153 (350)
T ss_pred cCCceeehHHHHHHHhhcCchhHhhcCCceEeccccc
Confidence 99996544333 2 22 32 3445666555444
No 278
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=66.86 E-value=6.8 Score=32.43 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=28.6
Q ss_pred HHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcccccccee
Q 038482 70 GLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109 (234)
Q Consensus 70 ~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lv 109 (234)
..+...++ .+-++.|-|.|+.+|..+|.+.++.+..+.
T Consensus 103 kaL~e~gl--~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l 140 (391)
T cd07229 103 KALWLRGL--LPRIITGTATGALIAALVGVHTDEELLRFL 140 (391)
T ss_pred HHHHHcCC--CCceEEEecHHHHHHHHHHcCCHHHHHHHH
Confidence 33445577 677899999999999999987666555544
No 279
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=66.66 E-value=8.1 Score=33.51 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHH-HhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 68 LIGLI-DLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 68 l~~~~-~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
+.+++ +..|+ ++-.++|||+|=+.|+..|-
T Consensus 254 La~ll~~~~GI--~Pdav~GHSlGE~aAa~aAG 284 (538)
T TIGR02816 254 LTQLLCDEFAI--KPDFALGYSKGEASMWASLG 284 (538)
T ss_pred HHHHHHHhcCC--CCCEEeecCHHHHHHHHHhC
Confidence 44555 57899 89999999999988877774
No 280
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=65.49 E-value=41 Score=27.72 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=57.1
Q ss_pred CceEEEecCCCC-------cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCc
Q 038482 9 GPEILFLYGFPE-------LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEK 81 (234)
Q Consensus 9 ~~~lv~ihG~~~-------~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~ 81 (234)
...||++||-+. +.+.|..+++.+.++| -+-.+|..-.|..+. +++=+.-+..++.. .+
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~G--------leeDa~~lR~~a~~-----~~ 236 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFADG--------LEEDAYALRLFAEV-----GP 236 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhccc--------hHHHHHHHHHHHHh-----CC
Confidence 347999999875 4567999999999875 577888776665544 22223333333322 22
Q ss_pred EEEEEeChHHHHHHHHHHhccccccceeeeccC
Q 038482 82 VFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 82 ~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
-.++..|.-=..+ .|.|||-++.+++..
T Consensus 237 ~~lva~S~SKnfg-----LYgERVGa~~vva~~ 264 (396)
T COG1448 237 ELLVASSFSKNFG-----LYGERVGALSVVAED 264 (396)
T ss_pred cEEEEehhhhhhh-----hhhhccceeEEEeCC
Confidence 3777877765544 367889888888653
No 281
>PRK09936 hypothetical protein; Provisional
Probab=64.02 E-value=31 Score=27.28 Aligned_cols=51 Identities=8% Similarity=-0.071 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 21 LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 21 ~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
+...|..+.+.+...|++.+++.+-++|.|+-.. -+.+..++.+.-...|+
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~------~~g~La~~l~~A~~~Gl 86 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGG------QRGWLAKRLAAAQQAGL 86 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeeccCCCccc------chHHHHHHHHHHHHcCC
Confidence 4567999999999999999999999999984433 15566666666666666
No 282
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=63.06 E-value=66 Score=25.45 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCe--EEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHH
Q 038482 27 HQTIALASLSYR--AVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMA 94 (234)
Q Consensus 27 ~~~~~l~~~g~~--v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia 94 (234)
..++.+.+.|.. =+++| ||.|.+.... .+ -++.+.+..+ +.+ +-.+++|+|-=..+.
T Consensus 167 ~~i~~a~~~GI~~~~IilD-PGiGF~k~~~----~n-~~ll~~l~~l-~~l----g~Pilvg~SRKsfig 225 (282)
T PRK11613 167 EQIARCEAAGIAKEKLLLD-PGFGFGKNLS----HN-YQLLARLAEF-HHF----NLPLLVGMSRKSMIG 225 (282)
T ss_pred HHHHHHHHcCCChhhEEEe-CCCCcCCCHH----HH-HHHHHHHHHH-HhC----CCCEEEEecccHHHH
Confidence 334556666775 77888 4788654322 12 1223333332 333 447899999666554
No 283
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=62.37 E-value=16 Score=29.24 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.7
Q ss_pred EEEEeChHHHHHHHHHHhc
Q 038482 83 FVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~ 101 (234)
.+.|.|+||.+|..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 6779999999999999754
No 284
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=61.16 E-value=64 Score=24.41 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=37.0
Q ss_pred CceEEEecCCCCcchhhHHHHHH-HHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQTIA-LASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~-l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
...|+|-||...++.......+. |.++|| .|++.-.-||- .++++.+-++..++ ++++|+
T Consensus 138 e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP---------------~~d~vi~~l~~~~~--~~v~L~ 199 (265)
T COG4822 138 EILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYP---------------LVDTVIEYLRKNGI--KEVHLI 199 (265)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCC---------------cHHHHHHHHHHcCC--ceEEEe
Confidence 34778889988776554444444 556677 55555443331 35566667777777 776665
No 285
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.38 E-value=20 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred CcEEEEEeChHHHHHHHHHH---hccccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCS---FRANRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~---~~p~~v~~lvl~~~~~~~ 117 (234)
.+++|.|.|+|++-+..... ..-+++.+.++.+++...
T Consensus 109 PkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s 149 (289)
T PF10081_consen 109 PKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFS 149 (289)
T ss_pred CeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCC
Confidence 47999999999977654432 233578999999986654
No 286
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=58.55 E-value=15 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCCcE-EEEEeChHHHHHHHHHHhccccccceee
Q 038482 64 VIGDLIGLIDLVAPNDEKV-FVVGHDSGTYMACFLCSFRANRIKALVN 110 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~-~l~GhS~Gg~ia~~~a~~~p~~v~~lvl 110 (234)
.|..|.++++.-.+ ++ .++|.|+|+.-+..|..+.+.+-+++++
T Consensus 26 TAGVLD~fl~a~~~---~f~~~~GvSAGA~n~~aYls~Q~gra~~~~~ 70 (292)
T COG4667 26 TAGVLDEFLRANFN---PFDLVVGVSAGALNLVAYLSKQRGRARRVIV 70 (292)
T ss_pred hHHHHHHHHHhccC---CcCeeeeecHhHHhHHHHhhcCCchHHHHHH
Confidence 36667777765544 45 6779999999999999998888776664
No 287
>COG0218 Predicted GTPase [General function prediction only]
Probab=58.26 E-value=19 Score=26.74 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.6
Q ss_pred EEeecCCCCCCCCccc
Q 038482 39 AVAPDLRGFGDTDELL 54 (234)
Q Consensus 39 v~~~D~~G~G~S~~~~ 54 (234)
+..+|+||||....+.
T Consensus 72 ~~lVDlPGYGyAkv~k 87 (200)
T COG0218 72 LRLVDLPGYGYAKVPK 87 (200)
T ss_pred EEEEeCCCcccccCCH
Confidence 7789999999987665
No 288
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=58.15 E-value=23 Score=25.19 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=25.4
Q ss_pred CceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeec
Q 038482 9 GPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D 43 (234)
++.+|++-|+++++..= ..+.+.|.+.|+.++.+|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 36789999999887642 345566777799999997
No 289
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=58.04 E-value=24 Score=29.11 Aligned_cols=38 Identities=21% Similarity=-0.012 Sum_probs=30.3
Q ss_pred EEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCC
Q 038482 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD 51 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~ 51 (234)
|||+|..... .|+.+++.|.+.|+.|.++-..+.+...
T Consensus 2 il~~~~~~p~--~~~~la~~L~~~G~~v~~~~~~~~~~~~ 39 (396)
T cd03818 2 ILFVHQNFPG--QFRHLAPALAAQGHEVVFLTEPNAAPPP 39 (396)
T ss_pred EEEECCCCch--hHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 7888887654 4889999999999999998777765543
No 290
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=57.35 E-value=0.81 Score=35.54 Aligned_cols=91 Identities=15% Similarity=-0.010 Sum_probs=54.4
Q ss_pred CceEEEecCCCCcchhhHHH-HHHHHhcCCeEEeecCCCCCCCCcccccccc--cHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 9 GPEILFLYGFPELRYSRCHQ-TIALASLSYRAVAPDLRGFGDTDELLEMTSY--TCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~-~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~--~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
+..++..||...+......+ ...+...++.++..|+++++.+..+....-. ........+....+.... .++.+.
T Consensus 88 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 165 (299)
T COG1073 88 GESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDA--SRIVVW 165 (299)
T ss_pred cccccccccccCccccccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHh--hcccce
Confidence 34567788875554444333 3344444689999999999999754421111 222222222222212233 689999
Q ss_pred EeChHHHHHHHHHHhc
Q 038482 86 GHDSGTYMACFLCSFR 101 (234)
Q Consensus 86 GhS~Gg~ia~~~a~~~ 101 (234)
|.|+||..++......
T Consensus 166 g~s~g~~~~~~~~~~~ 181 (299)
T COG1073 166 GESLGGALALLLLGAN 181 (299)
T ss_pred eeccCceeeccccccc
Confidence 9999999998877654
No 291
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=57.00 E-value=14 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=24.6
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecC
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~ 44 (234)
.+.=||++|-|-+.+ +..|+++||+|+.+|+
T Consensus 37 ~~~rvLvPgCG~g~D-----~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYD-----MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp TSEEEEETTTTTSCH-----HHHHHHTTEEEEEEES
T ss_pred CCCeEEEeCCCChHH-----HHHHHHCCCeEEEEec
Confidence 345688899888755 5678888999999996
No 292
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=56.59 E-value=19 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccc
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRI 105 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v 105 (234)
.+..+.++.+ .++ .+-++.|.|.|+.+|..++.+..+.+
T Consensus 84 h~Gvl~aL~e-~~l--~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 84 HLGVVKALWE-QDL--LPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred HHHHHHHHHH-cCC--CCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 3444555544 466 56789999999999999997654433
No 293
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=56.50 E-value=22 Score=27.16 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc
Q 038482 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 65 a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
+..+..+. ..++.++.-.+.|-|.|+.++..++...+.
T Consensus 15 ~GVl~~L~-e~gi~~~~~~i~G~SAGAl~aa~~asg~~~ 52 (233)
T cd07224 15 LGVLSLLI-EAGVINETTPLAGASAGSLAAACSASGLSP 52 (233)
T ss_pred HHHHHHHH-HcCCCCCCCEEEEEcHHHHHHHHHHcCCCH
Confidence 34444444 445611234899999999999999987543
No 294
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.41 E-value=79 Score=23.37 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc--c
Q 038482 27 HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN--R 104 (234)
Q Consensus 27 ~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~--~ 104 (234)
...+.+.+++++++.+|-+|... .-.+..+.+..+++.... ..++|+=-+..+.-.+.-+.++-+ .
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~~~--~~~~LVlsa~~~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRSP----------RDEELLEELKKLLEALNP--DEVHLVLSATMGQEDLEQALAFYEAFG 141 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHHSS--SEEEEEEEGGGGGHHHHHHHHHHHHSS
T ss_pred HHHHHHhhcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhcCC--ccceEEEecccChHHHHHHHHHhhccc
Confidence 34455656679999999987542 224456666677776655 556555444444445444443322 3
Q ss_pred ccceeee
Q 038482 105 IKALVNL 111 (234)
Q Consensus 105 v~~lvl~ 111 (234)
+.++|+-
T Consensus 142 ~~~lIlT 148 (196)
T PF00448_consen 142 IDGLILT 148 (196)
T ss_dssp TCEEEEE
T ss_pred CceEEEE
Confidence 6777763
No 295
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=56.03 E-value=62 Score=25.57 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=47.7
Q ss_pred eEEEecCCCCcchhhHH-HHHHHHhcCC-------eEEeecCCCCCCCCcccccccccHHHHH--------HHHHHHHHh
Q 038482 11 EILFLYGFPELRYSRCH-QTIALASLSY-------RAVAPDLRGFGDTDELLEMTSYTCFHVI--------GDLIGLIDL 74 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~-~~~~l~~~g~-------~v~~~D~~G~G~S~~~~~~~~~~~~~~a--------~dl~~~~~~ 74 (234)
.-+++.|.|..+---.. +...+.+.|. +++.+|-.|-=..++.. -...-..++ .+|.++++.
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~--l~~~~~~~a~~~~~~~~~~L~e~i~~ 103 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD--LTPFKKPFARKDEEKEGKSLLEVVKA 103 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--chHHHHHHHhhcCcccCCCHHHHHHh
Confidence 45667788876655544 4455555565 89999998844333322 001111222 356666665
Q ss_pred cCCCCCcEEEEEeCh-HHHHHHHHH
Q 038482 75 VAPNDEKVFVVGHDS-GTYMACFLC 98 (234)
Q Consensus 75 ~~~~~~~~~l~GhS~-Gg~ia~~~a 98 (234)
. ++=+|+|-|- ||.+.-+..
T Consensus 104 v----~ptvlIG~S~~~g~ft~evv 124 (279)
T cd05312 104 V----KPTVLIGLSGVGGAFTEEVV 124 (279)
T ss_pred c----CCCEEEEeCCCCCCCCHHHH
Confidence 5 4578999994 776544443
No 296
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=55.97 E-value=70 Score=22.62 Aligned_cols=61 Identities=23% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh-HHHHHHHHHHhc
Q 038482 29 TIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS-GTYMACFLCSFR 101 (234)
Q Consensus 29 ~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~-Gg~ia~~~a~~~ 101 (234)
.+.+.+.|. +|+.++.+.. ..++.+.+++.+.++++..+. .++++|+|- |.-++-.+|.+.
T Consensus 51 ~~~l~~~G~d~v~~~~~~~~---------~~~~~~~~a~~l~~~~~~~~~---~lVl~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 51 RKALAKYGADKVYHIDDPAL---------AEYDPEAYADALAELIKEEGP---DLVLFGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp HHHHHSTTESEEEEEE-GGG---------TTC-HHHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhhhhcCCcEEEEecCccc---------cccCHHHHHHHHHHHHHhcCC---CEEEEcCcCCCCcHHHHHHHHh
Confidence 334554564 6787775432 346778899999999999776 688888875 446777777653
No 297
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=55.58 E-value=81 Score=23.20 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCceEEEecCCCCcchhh-----HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHH-HHHHhcCC
Q 038482 8 QGPEILFLYGFPELRYSR-----CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLI-GLIDLVAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~-~~~~~~~~ 77 (234)
.+.++++++- .+| ...+..|.+.|+.++-+.. |+ =. .+.+++++++.+. .+++.+++
T Consensus 114 ~~~pvii~P~-----~M~~~p~~~~Nl~~L~~~G~~vi~P~~-g~--~a-----~p~~~~~~~~~~v~~~~~~l~~ 176 (185)
T PRK06029 114 ERRRLVLCVR-----ETPLHLGHLRNMTKLAEMGAIIMPPVP-AF--YH-----RPQTLEDMVDQTVGRVLDLFGI 176 (185)
T ss_pred cCCCEEEEec-----cccCCHHHHHHHHHHHHCcCEEECCCc-cc--cc-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 3456777762 455 3567778888887777653 32 22 3458889988865 67788887
No 298
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=55.57 E-value=38 Score=28.34 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=36.4
Q ss_pred CCchhHHHHHHhhhcccCCcccc--eEeecCCccccccccc--cCCCCCceeEEeCCCCCcccc
Q 038482 173 WLSDEDIKYFTTKFDKNALLKES--TITKGVKEYIHKGEFR--SDVPLLEEVTIMEGVGHFINQ 232 (234)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~P--lli~G~~D~~~~~~~~--~~~~~~~~~~~~~~agH~~~~ 232 (234)
.+++..+.....-.. -+.+ ++|.|++|++..+.+. +...++ .+.+.||++|...+
T Consensus 334 ~Fdp~am~dI~~Wvr----~~~~rmlFVYG~nDPW~A~~f~l~~g~~ds-~v~~~PggnHga~I 392 (448)
T PF05576_consen 334 KFDPTAMRDIDRWVR----NNGPRMLFVYGENDPWSAEPFRLGKGKRDS-YVFTAPGGNHGARI 392 (448)
T ss_pred CcCHHHHHHHHHHHH----hCCCeEEEEeCCCCCcccCccccCCCCcce-EEEEcCCCcccccc
Confidence 355555554444333 2555 6699999999854443 345678 88889999997644
No 299
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=55.12 E-value=38 Score=25.77 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 24 SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
.++.++++|.++|++|.-+.+.- ..+...+.+-|...++..++ +.+.++
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~-----------~~~~~s~~~~L~~~~~~~~~--~~~~~~ 98 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDD-----------PENTQSFEDALARALKQHGI--DRLHVM 98 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT------------TT--SSHHHHHHHHHHHH------EEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCC-----------ccccccHHHHHHHHHHHcCC--CEEEEE
Confidence 35677889999999999998642 22333567778888888888 777765
No 300
>PTZ00445 p36-lilke protein; Provisional
Probab=55.02 E-value=50 Score=24.93 Aligned_cols=67 Identities=15% Similarity=-0.055 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHhcCCeEEeecCCCC------C-CCCccccc--ccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHH
Q 038482 23 YSRCHQTIALASLSYRAVAPDLRGF------G-DTDELLEM--TSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTY 92 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~G~------G-~S~~~~~~--~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ 92 (234)
+.=+.+++.|.+.|+++++.|+-.- | .-.+.++. -..+.......+...+...++ ++.|+-+|-=-.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I---~v~VVTfSd~~~ 104 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNI---KISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCC---eEEEEEccchhh
Confidence 3456778889999999999997432 1 11111000 001122223334444455576 899999996433
No 301
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=54.82 E-value=45 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=35.0
Q ss_pred CCceEEEecCCCCcch---hhHHHHHHHHhcCCeEEeec--CCCCCCCCcccccccccHHHHHHHHHHHHHh
Q 038482 8 QGPEILFLYGFPELRY---SRCHQTIALASLSYRAVAPD--LRGFGDTDELLEMTSYTCFHVIGDLIGLIDL 74 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~---~~~~~~~~l~~~g~~v~~~D--~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~ 74 (234)
..+|++++||.--..- .=..+.+.|.+.|.++...- --|||..... ...++.+.+.++++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~------~~~~~~~~~~~f~~~ 208 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPE------NRRDWYERILDFFDK 208 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHH------HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCch------hHHHHHHHHHHHHHH
Confidence 3589999999854332 23455677777775554444 4455444332 223566666666654
No 302
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.61 E-value=24 Score=26.72 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=27.7
Q ss_pred cCCCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 6 KGQGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 6 ~g~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
.++.|+.|+|-|..+. ..=..++.+|.+.||+|++--
T Consensus 3 ~~~~~k~VlItgcs~G-GIG~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 3 LQSQPKKVLITGCSSG-GIGYALAKEFARNGYLVYATA 39 (289)
T ss_pred cccCCCeEEEeecCCc-chhHHHHHHHHhCCeEEEEEc
Confidence 4567788888776443 445667899999999999864
No 303
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=54.59 E-value=89 Score=23.47 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=23.1
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCC
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLR 45 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~ 45 (234)
.+..+-|. ++..=+.+...|+++|++|.+.|+.
T Consensus 15 k~~~vtGg--~sGIGrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 15 KVAAVTGG--SSGIGRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred ceeEEecC--CchHHHHHHHHHHhcCcEEEEeecc
Confidence 34444443 3445677888899999999998764
No 304
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=53.16 E-value=30 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=22.7
Q ss_pred ceEEEecCCCC-------------cchhhH-----------HHHHHHHhcCCeEEee
Q 038482 10 PEILFLYGFPE-------------LRYSRC-----------HQTIALASLSYRAVAP 42 (234)
Q Consensus 10 ~~lv~ihG~~~-------------~~~~~~-----------~~~~~l~~~g~~v~~~ 42 (234)
..++|+||-+= +.+.|. ..+..|.+.|++|+++
T Consensus 58 ~~viFvHGCFWh~H~c~~a~vPksnt~fWleKi~kNveRD~r~~~~L~~~GwrvlvV 114 (150)
T COG3727 58 RCVIFVHGCFWHGHHCYLAKVPKSNTEFWLEKIGKNVERDERDIKRLQQLGWRVLVV 114 (150)
T ss_pred eEEEEEeeeeccCCccccccCCCcchHHHHHHHhhhhhhhHHHHHHHHHcCCeEEEE
Confidence 47889999752 223343 2356788889999886
No 305
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=52.93 E-value=35 Score=29.27 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeChHHHHHH-HHHH-hccccccceeeeccCCCC
Q 038482 66 GDLIGLIDLVAPNDEKVFVVGHDSGTYMAC-FLCS-FRANRIKALVNLSVVFNP 117 (234)
Q Consensus 66 ~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~-~~a~-~~p~~v~~lvl~~~~~~~ 117 (234)
+.+.+=+.+.|.+++++.|+|.|-|++-+. .+.+ .....+++.|+-+++...
T Consensus 204 ~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 204 QWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred HHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCCC
Confidence 445555667777668999999999996543 3322 122357888887766654
No 306
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=52.60 E-value=17 Score=27.68 Aligned_cols=29 Identities=7% Similarity=-0.022 Sum_probs=22.2
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecC
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~ 44 (234)
.=||++|-|.+.. +..|+++||+|+.+|+
T Consensus 45 ~rvLvPgCGkg~D-----~~~LA~~G~~V~GvDl 73 (226)
T PRK13256 45 SVCLIPMCGCSID-----MLFFLSKGVKVIGIEL 73 (226)
T ss_pred CeEEEeCCCChHH-----HHHHHhCCCcEEEEec
Confidence 4567777777644 5677888999999996
No 307
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=52.14 E-value=70 Score=21.44 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=44.7
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChH
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSG 90 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~G 90 (234)
.||.-|| .-+......++.+....-.+.++++. ...+.+++.+.+.++++.... ++.++++-==+|
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~-~~~viil~Dl~G 68 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFP-----------PGESPDDLLEKIKAALAELDS-GEGVLILTDLFG 68 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeC-----------CCCCHHHHHHHHHHHHHHhCC-CCcEEEEEeCCC
Confidence 4677888 44445555666665532467788765 345778888888888888754 145555555557
Q ss_pred HHHH
Q 038482 91 TYMA 94 (234)
Q Consensus 91 g~ia 94 (234)
|...
T Consensus 69 GSp~ 72 (122)
T cd00006 69 GSPN 72 (122)
T ss_pred CCHH
Confidence 7654
No 308
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=51.81 E-value=53 Score=23.33 Aligned_cols=46 Identities=24% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHH
Q 038482 36 SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMA 94 (234)
Q Consensus 36 g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia 94 (234)
|-.|++.|.+| ...+-+++|+.+..+-+. |- .=.+++|-|.|=.=+
T Consensus 67 ~~~vi~Ld~~G----------k~~sSe~fA~~l~~~~~~-G~--~i~f~IGG~~Gl~~~ 112 (155)
T COG1576 67 GSYVVLLDIRG----------KALSSEEFADFLERLRDD-GR--DISFLIGGADGLSEA 112 (155)
T ss_pred CCeEEEEecCC----------CcCChHHHHHHHHHHHhc-CC--eEEEEEeCcccCCHH
Confidence 46788888887 345556666666655432 22 345777888775443
No 309
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=51.18 E-value=86 Score=24.57 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=51.0
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|-++|.--.+--..-.+.+.+.+.+.|. -++++|+| -+.++++...++..++ ..+.|+.=+
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi--~~I~lvaPt 157 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGI--DPIFLVAPT 157 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCC--cEEEEeCCC
Confidence 5556665555555556677778877764 58889987 4577788888899999 899998777
Q ss_pred hHHHHHHHHHH
Q 038482 89 SGTYMACFLCS 99 (234)
Q Consensus 89 ~Gg~ia~~~a~ 99 (234)
..--..-..+.
T Consensus 158 t~~~rl~~i~~ 168 (265)
T COG0159 158 TPDERLKKIAE 168 (265)
T ss_pred CCHHHHHHHHH
Confidence 76555444443
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=51.13 E-value=82 Score=26.50 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc
Q 038482 24 SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN 103 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~ 103 (234)
.=+..+.+|.+.|.+|++. ...+.+++-..+..+++..+. ++-+++ .-||.++..+...+|+
T Consensus 73 tqd~vaa~l~~~gi~v~a~--------------~~~~~~~y~~~~~~~l~~~~~--~p~~i~--DdGg~~~~~~~~~~~~ 134 (413)
T cd00401 73 TQDHAAAAIAAAGIPVFAW--------------KGETLEEYWWCIEQALKFPDG--EPNMIL--DDGGDLTLLIHKKHPE 134 (413)
T ss_pred chHHHHHHHHhcCceEEEE--------------cCCCHHHHHHHHHHHHhccCC--CCcEEE--ecchHHHHHHHhhhhh
Confidence 3356677777777777776 234566777778888776555 555555 8899988888776766
Q ss_pred ccccee
Q 038482 104 RIKALV 109 (234)
Q Consensus 104 ~v~~lv 109 (234)
....++
T Consensus 135 ~~~~~~ 140 (413)
T cd00401 135 LLPGIR 140 (413)
T ss_pred hhhccE
Confidence 544433
No 311
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=50.83 E-value=74 Score=24.65 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=25.7
Q ss_pred CCceEEEecCCCCcchh-hHHHHHHHHhcCCe-EEeecCC
Q 038482 8 QGPEILFLYGFPELRYS-RCHQTIALASLSYR-AVAPDLR 45 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~-~~~~~~~l~~~g~~-v~~~D~~ 45 (234)
+.|.|++|+-.+..... .+...+.|.+.|++ |-.++.+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 46789999987765543 45556677777874 5556654
No 312
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.59 E-value=81 Score=23.07 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=36.6
Q ss_pred CCceEEEecCCCC---cchhhHHHHHHHHhcCCeEEeecCCCC---CCCCcccccccccHHHHHHHHHHHHH
Q 038482 8 QGPEILFLYGFPE---LRYSRCHQTIALASLSYRAVAPDLRGF---GDTDELLEMTSYTCFHVIGDLIGLID 73 (234)
Q Consensus 8 ~~~~lv~ihG~~~---~~~~~~~~~~~l~~~g~~v~~~D~~G~---G~S~~~~~~~~~~~~~~a~dl~~~~~ 73 (234)
.+.++|+++-+.. .+......+..|.+.|+.|+-+. +|+ |..... ...+++++++.+...+.
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g---~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYG---ALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC-CCccccCCccCC---CCCCHHHHHHHHHHHhc
Confidence 3568888875422 22334566788988888777776 454 332211 23466777766666543
No 313
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=48.47 E-value=67 Score=28.94 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCceEEEecCCCCc----------chhhHHHHHHHHhcCCeEEeec-CCC--CCCCCcccc----cccccHHHHHHHHHH
Q 038482 8 QGPEILFLYGFPEL----------RYSRCHQTIALASLSYRAVAPD-LRG--FGDTDELLE----MTSYTCFHVIGDLIG 70 (234)
Q Consensus 8 ~~~~lv~ihG~~~~----------~~~~~~~~~~l~~~g~~v~~~D-~~G--~G~S~~~~~----~~~~~~~~~a~dl~~ 70 (234)
++.+|++-|..... ...|..+++.|.++||+++.+| +.. .|....+.. .-+..+.+....+..
T Consensus 47 ~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~sny~~AlP 126 (672)
T PRK14581 47 NTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSSFYRRVYP 126 (672)
T ss_pred CceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcchHHHHHH
Confidence 45688999998532 3468889999999999999987 211 122211221 012223346677788
Q ss_pred HHHhcCCCCCcEEEEEe
Q 038482 71 LIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 71 ~~~~~~~~~~~~~l~Gh 87 (234)
+++..+.. ..+.++|.
T Consensus 127 ILKkyg~p-ATfFvVg~ 142 (672)
T PRK14581 127 LLKAYKWS-AVLAPVGT 142 (672)
T ss_pred HHHHcCCC-EEEEEech
Confidence 88999882 34566664
No 314
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=48.45 E-value=35 Score=26.22 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.1
Q ss_pred EEEEeChHHHHHHHHHHhcc
Q 038482 83 FVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p 102 (234)
.+.|-|.|+.++..++...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 89999999999999998764
No 315
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=48.37 E-value=81 Score=24.05 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCe-EEeecCCCCCCCCcccc------cccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 26 CHQTIALASLSYR-AVAPDLRGFGDTDELLE------MTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 26 ~~~~~~l~~~g~~-v~~~D~~G~G~S~~~~~------~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
..+++..+++ .. +++.-.--+|.|..... ....++..+..|+.+-+...|. ++++++..--|-.-++..+
T Consensus 43 ~~~a~~~a~~-~~~~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf--~~ivivngHgGN~~~l~~~ 119 (237)
T PF02633_consen 43 EAVAERAAER-LGEALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGF--RRIVIVNGHGGNIAALEAA 119 (237)
T ss_dssp HHHHHHHHHH-HTHEEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT----EEEEEESSTTHHHHHHHH
T ss_pred HHHHHHHHHH-CCcEEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCC--CEEEEEECCHhHHHHHHHH
Confidence 3445555554 33 44433334777665441 2344667777777777777899 8988886555544355555
Q ss_pred Hh
Q 038482 99 SF 100 (234)
Q Consensus 99 ~~ 100 (234)
++
T Consensus 120 ~~ 121 (237)
T PF02633_consen 120 AR 121 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 316
>PRK13753 dihydropteroate synthase; Provisional
Probab=47.89 E-value=67 Score=25.37 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHhcCC--eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHH
Q 038482 32 LASLSY--RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFL 97 (234)
Q Consensus 32 l~~~g~--~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~ 97 (234)
+.+.|. .=+++| ||.|...... ...++ ++.+.+..+...++ -.+|+|+|-=+++.-.+
T Consensus 160 ~~~~Gi~~~~IilD-PGiGF~k~k~--~~~n~-~ll~~l~~l~~~~g----~PvLvg~SRKsfig~~~ 219 (279)
T PRK13753 160 LRRSGVAADRLILD-PGMGFFLSPA--PETSL-HVLSNLQKLKSALG----LPLLVSVSRKSFLGATV 219 (279)
T ss_pred HHHcCCChhhEEEe-CCCCCCCCCC--hHHHH-HHHHhHHHHHHhCC----CceEEEccHhHHHHHHc
Confidence 445564 357888 7999842111 11222 23444444433344 47899999988887443
No 317
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=47.73 E-value=61 Score=26.20 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=55.3
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
.+++++.- +.+..|..+-+.|.++++.-.-.=++-||..-... -...-+.-.+.+..+++.+.. .+++|+|-|-
T Consensus 214 apvfYvSn--SPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i--~~sga~rK~~~l~nil~~~p~--~kfvLVGDsG 287 (373)
T COG4850 214 APVFYVSN--SPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNI--IESGAARKGQSLRNILRRYPD--RKFVLVGDSG 287 (373)
T ss_pred CCeEEecC--ChhHhHHHHHHHHhcCCCCCCchhHhhcCCccccc--ccchhhhcccHHHHHHHhCCC--ceEEEecCCC
Confidence 35555521 22335566666666655543333344444211111 111223334456668888888 8999999884
Q ss_pred HH--HHHHHHHHhccccccceeeeccC
Q 038482 90 GT--YMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 90 Gg--~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
== -|=.+++.++|+||.++.+=+.+
T Consensus 288 E~DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 288 EHDPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred CcCHHHHHHHHHhCccceeeEeeeecc
Confidence 32 33345567899999988875544
No 318
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=47.38 E-value=95 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=15.7
Q ss_pred EEecCCCCcchhh--HHHHHHHHhcCCeEEeec
Q 038482 13 LFLYGFPELRYSR--CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 13 v~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D 43 (234)
++++|.-|++... ..+...+.+.|.|++-++
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 4446655544322 334455555566666554
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.25 E-value=47 Score=28.50 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=55.9
Q ss_pred CceEEEecCCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCccc-----c------------------cccccHHHH
Q 038482 9 GPEILFLYGFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELL-----E------------------MTSYTCFHV 64 (234)
Q Consensus 9 ~~~lv~ihG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-----~------------------~~~~~~~~~ 64 (234)
..-.+++-|++-.. ...+.+.+.|...+.+++-+++++-|+-.+-. + ....+-++.
T Consensus 96 SqKkl~~dG~~LQ~NyVvrHF~Effsd~~R~~mfWSLa~Ad~raqRlAYL~ddP~FAgLs~D~r~lLs~ivvrq~teaEI 175 (831)
T PRK15180 96 SQKKIMAYGFCLQINYLTRHFYEFFSQTERACMYWSLATQGNRHKLLAYLKDDPCFAGMSEDDRALLSNINVEQMDEHAI 175 (831)
T ss_pred ceeeEEeccchhhHHHHHHHHHHHhhhcchhhhhhhcccccchhHHHHHhhcChhhhhhhHhHHHHHHhhHhhcccHHHH
Confidence 34567888876544 45677888888888888888999888755411 0 012355666
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 65 IGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 65 a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
-+|+.+++..+|. +++.+|-|-
T Consensus 176 EeDmmeIVqLLGk--~rVvfVTHV 197 (831)
T PRK15180 176 EQDMMEIVQLLGR--DRVMFMTHV 197 (831)
T ss_pred HHHHHHHHHHhCC--CcEEEEEee
Confidence 7788888888898 899999995
No 320
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=47.11 E-value=36 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEeChHHHHHHHHHHhcc
Q 038482 83 FVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p 102 (234)
.+.|-|.|+.++..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 49999999999999998754
No 321
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=46.99 E-value=39 Score=24.15 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
+..-+.+.++++.+...++++.+.|-|..|..-+.++-..++.+..++=.++
T Consensus 51 ~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 51 EQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 3444455555554433337899999999999988888665666777766654
No 322
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=46.79 E-value=1e+02 Score=21.92 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC-hHHHHHHHHHHhcc
Q 038482 29 TIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFRA 102 (234)
Q Consensus 29 ~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS-~Gg~ia~~~a~~~p 102 (234)
.+.+...|. +++.++.+.. ..++.+.+++.+.++++..+. .++|+|+| .|..++-.+|.+..
T Consensus 44 ~~~~~~~Gad~v~~~~~~~~---------~~~~~~~~a~al~~~i~~~~p---~~Vl~~~t~~g~~la~rlAa~L~ 107 (168)
T cd01715 44 AAALKAYGADKVLVAEDPAL---------AHYLAEPYAPALVALAKKEKP---SHILAGATSFGKDLAPRVAAKLD 107 (168)
T ss_pred HHHHHhcCCCEEEEecChhh---------cccChHHHHHHHHHHHHhcCC---CEEEECCCccccchHHHHHHHhC
Confidence 344444444 5666653321 346778899999999988765 67777665 55577777777643
No 323
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.76 E-value=91 Score=24.45 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCCCcc-hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE-EEEeC
Q 038482 17 GFPELR-YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF-VVGHD 88 (234)
Q Consensus 17 G~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~-l~GhS 88 (234)
|.+|++ ..-..++..+. ++.++-++.. ..|++.++-+|+..++...|+.+++++ ++-.+
T Consensus 38 G~~GsGr~sl~rLaa~i~--~~~~~~i~~~-----------~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 38 GVGGSGRQSLARLAAFIC--GYEVFQIEIT-----------KGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp CTTTSCHHHHHHHHHHHT--TEEEE-TTTS-----------TTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECC
T ss_pred cCCCccHHHHHHHHHHHh--ccceEEEEee-----------CCcCHHHHHHHHHHHHHHHhccCCCeEEEecCc
Confidence 555444 33455554444 3788888742 458999999999999988877545554 44544
No 324
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=46.30 E-value=25 Score=28.19 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=17.5
Q ss_pred CcEEEEEeChHHHHHHHHHH
Q 038482 80 EKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~ 99 (234)
++..+.|||+|=+.|+..+.
T Consensus 85 ~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 85 KPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCceeecccHhHHHHHHHcc
Confidence 78899999999999887764
No 325
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=45.48 E-value=29 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEEEeChHHHHHHHHHHhccccc
Q 038482 83 FVVGHDSGTYMACFLCSFRANRI 105 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~p~~v 105 (234)
.+.|-|.|+.++..++. .|+++
T Consensus 34 ~i~GtSaGAl~aa~~a~-~~~~~ 55 (246)
T cd07222 34 RFAGASAGSLVAAVLLT-APEKI 55 (246)
T ss_pred EEEEECHHHHHHHHHhc-ChHHH
Confidence 79999999999999984 35444
No 326
>PF03283 PAE: Pectinacetylesterase
Probab=45.01 E-value=1.2e+02 Score=25.04 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=25.6
Q ss_pred CcEEEEEeChHHHHHHHHHH----hccccccceeeeccCCCC
Q 038482 80 EKVFVVGHDSGTYMACFLCS----FRANRIKALVNLSVVFNP 117 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~----~~p~~v~~lvl~~~~~~~ 117 (234)
++++|.|-|-||.=++..+- +.|..++-..+.++....
T Consensus 156 ~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~ 197 (361)
T PF03283_consen 156 KQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFL 197 (361)
T ss_pred ceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccccccc
Confidence 78999999999988776553 356545445555554443
No 327
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.53 E-value=50 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCC--CCcEEEEEeC--hHHHHHHHHHHh
Q 038482 65 IGDLIGLIDLVAPN--DEKVFVVGHD--SGTYMACFLCSF 100 (234)
Q Consensus 65 a~dl~~~~~~~~~~--~~~~~l~GhS--~Gg~ia~~~a~~ 100 (234)
+..+.+++++.++. ++++.++|.| ||--++..+..+
T Consensus 143 p~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 143 PSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 45567777776543 6899999997 999999888754
No 328
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=44.00 E-value=64 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=24.6
Q ss_pred CCeEEeecCCCCCCCCccc-ccccc---cH-HHHHHHHHHHHHhcCC
Q 038482 36 SYRAVAPDLRGFGDTDELL-EMTSY---TC-FHVIGDLIGLIDLVAP 77 (234)
Q Consensus 36 g~~v~~~D~~G~G~S~~~~-~~~~~---~~-~~~a~dl~~~~~~~~~ 77 (234)
+-++|++| ||||..++-. ..... ++ -+++..+.+.++..+.
T Consensus 55 ~~~~IvID-pGHGG~DpGAvg~~G~~EKdi~L~IA~~l~~~L~~~G~ 100 (287)
T PRK10319 55 GKRVVMLD-PGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGI 100 (287)
T ss_pred CCeEEEEE-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 35799999 7999876544 11111 22 3455666666766655
No 329
>PHA02114 hypothetical protein
Probab=43.96 E-value=38 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=24.5
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
+||+=-.+..+..-|-.++..|.+.||+|++-.
T Consensus 84 tivldvn~amsr~pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 84 TIVLDVNYAMSRAPWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred eEEEEehhhhccCcHHHHHHHHHhcCceeeehh
Confidence 566655666777788888888888888888753
No 330
>COG3621 Patatin [General function prediction only]
Probab=43.38 E-value=47 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=33.3
Q ss_pred CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCC--CCcEEEE-EeChHHHHHHHHHHhcc
Q 038482 37 YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPN--DEKVFVV-GHDSGTYMACFLCSFRA 102 (234)
Q Consensus 37 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~--~~~~~l~-GhS~Gg~ia~~~a~~~p 102 (234)
|++..+| |=|-- -.+...++..+++.... ++-+.++ |.|.||.+++.+|+..+
T Consensus 9 ~rIlsld--GGGvr-----------G~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks 64 (394)
T COG3621 9 YRILSLD--GGGVR-----------GAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKS 64 (394)
T ss_pred eeEEEec--CCccc-----------cHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCC
Confidence 8888887 32211 13455555666654321 3456555 99999999999997544
No 331
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=43.07 E-value=46 Score=25.80 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.7
Q ss_pred cEEEEEeChHHHHHHHHHHhcc
Q 038482 81 KVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
.-.+.|-|.|+.++..++...+
T Consensus 33 ~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 33 ARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CCEEEEEcHHHHHHHHHHhCCC
Confidence 3479999999999999998765
No 332
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.04 E-value=39 Score=24.35 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=49.5
Q ss_pred EEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCccc----ccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 13 LFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELL----EMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 13 v~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~----~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|++=|.++|..+=..++.+|..+ |+.-.+-+|.--.|..+. -..+|.++.. ...-+++++- +-=+|+|.|
T Consensus 44 vl~cGNGgSaadAqHfaael~gR-f~~eR~~lpaIaLt~dsS~lTai~NDy~yd~v---FsRqveA~g~--~GDvLigIS 117 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGR-FEKERPSLPAIALSTDSSVLTAIANDYGYDEV---FSRQVEALGQ--PGDVLIGIS 117 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhH-HHhcCCCCCeeEeecccHHHhhhhccccHHHH---HHHHHHhcCC--CCCEEEEEe
Confidence 44558888888888899999887 887777777766654333 0134555443 3344456666 666899999
Q ss_pred hHH
Q 038482 89 SGT 91 (234)
Q Consensus 89 ~Gg 91 (234)
.-|
T Consensus 118 TSG 120 (176)
T COG0279 118 TSG 120 (176)
T ss_pred CCC
Confidence 888
No 333
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.85 E-value=1.3e+02 Score=25.59 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc--cccce
Q 038482 31 ALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN--RIKAL 108 (234)
Q Consensus 31 ~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~l 108 (234)
.+.+.+|.++.+|-+|.-. .-+.+.+.+..+.+.... ..++||--++-|.-+...+..+.+ .+.++
T Consensus 177 ~~~~~~~DvViIDTaGr~~----------~d~~lm~El~~i~~~~~p--~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHK----------QEDSLFEEMLQVAEAIQP--DNIIFVMDGSIGQAAEAQAKAFKDSVDVGSV 244 (429)
T ss_pred HHHhCCCCEEEEECCCCCc----------chHHHHHHHHHHhhhcCC--cEEEEEeccccChhHHHHHHHHHhccCCcEE
Confidence 3444479999999987422 113344555555555555 667777767767666666655433 35556
Q ss_pred ee
Q 038482 109 VN 110 (234)
Q Consensus 109 vl 110 (234)
|+
T Consensus 245 Il 246 (429)
T TIGR01425 245 II 246 (429)
T ss_pred EE
Confidence 65
No 334
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.81 E-value=1.6e+02 Score=25.07 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=46.8
Q ss_pred HHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcccc--ccc
Q 038482 30 IALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANR--IKA 107 (234)
Q Consensus 30 ~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~--v~~ 107 (234)
+.+.+.+|+|+.+|-.|.- .-=+++-+.+.++-+.+.. ..+.+|--||=|.-|...|..+.+. +.+
T Consensus 176 ~~ak~~~~DvvIvDTAGRl----------~ide~Lm~El~~Ik~~~~P--~E~llVvDam~GQdA~~~A~aF~e~l~itG 243 (451)
T COG0541 176 EKAKEEGYDVVIVDTAGRL----------HIDEELMDELKEIKEVINP--DETLLVVDAMIGQDAVNTAKAFNEALGITG 243 (451)
T ss_pred HHHHHcCCCEEEEeCCCcc----------cccHHHHHHHHHHHhhcCC--CeEEEEEecccchHHHHHHHHHhhhcCCce
Confidence 3344445677777765531 1124566666676667777 8889999999999999998877664 556
Q ss_pred eeee
Q 038482 108 LVNL 111 (234)
Q Consensus 108 lvl~ 111 (234)
+|+-
T Consensus 244 vIlT 247 (451)
T COG0541 244 VILT 247 (451)
T ss_pred EEEE
Confidence 6663
No 335
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=42.73 E-value=1.6e+02 Score=23.70 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=41.2
Q ss_pred HHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH-HHHHHHHHhc
Q 038482 30 IALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFR 101 (234)
Q Consensus 30 ~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg-~ia~~~a~~~ 101 (234)
+.+...|. +|+..|.+. ..|+.+.+++.+.++++.... ..++|+|+|.=| -++-.+|++.
T Consensus 42 ~~~~~~Gad~V~~~~~~~----------~~~~~e~~~~al~~~i~~~~p--~~~vl~~~T~~Gr~laprlAa~l 103 (313)
T PRK03363 42 AQAIQLGANHVWKLSGKP----------DDRMIEDYAGVMADTIRQHGA--DGLVLLPNTRRGKLLAAKLGYRL 103 (313)
T ss_pred HHHHhcCCCEEEEecCcc----------cccChHHHHHHHHHHHHhhCC--CcEEEEcCCccHHHHHHHHHHHh
Confidence 44444443 677776532 237778899999999888765 568999888755 6777777664
No 336
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.64 E-value=1.3e+02 Score=21.94 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHH-HHHHhcCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLI-GLIDLVAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~-~~~~~~~~ 77 (234)
.+.|+++++--.-....-...++.|.+.|+.++-+. +|+ =. .+.+++++++-+. .+++.+|+
T Consensus 111 ~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~--~~-----~p~~~~~~~~~i~~~~l~~lg~ 173 (181)
T TIGR00421 111 ERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPM-PAF--YT-----RPKSVEDMIDFIVGRVLDQLGI 173 (181)
T ss_pred cCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCC-Ccc--cC-----CCCCHHHHHHHHHHHHHHHcCC
Confidence 345666666311111222455678888888887665 343 11 3458888888765 56688887
No 337
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=42.32 E-value=1e+02 Score=25.37 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 30 IALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 30 ~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
..|.++||.|+.+-+.-+..+ . . ..++..+-..|...+.+.+|+ +..++=
T Consensus 21 ~lLk~QGyeViGl~m~~~~~~-~-~--~~C~s~~d~~da~~va~~LGI---p~~~vd 70 (356)
T COG0482 21 YLLKEQGYEVIGLFMKNWDED-G-G--GGCCSEEDLRDAERVADQLGI---PLYVVD 70 (356)
T ss_pred HHHHHcCCeEEEEEEEeeccC-C-C--CcCCchhHHHHHHHHHHHhCC---ceEEEc
Confidence 345677999999988766541 1 1 245556667788888888888 555553
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=41.58 E-value=65 Score=23.28 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHh-cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 23 YSRCHQTIALAS-LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 23 ~~~~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
..+..+.+.+.+ .+.+++++|.-..=.....+ .......+.+.+..+.+..+. .++++.|.
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~--~~~~~~~~~~~l~~la~~~~~---~vi~v~H~ 188 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDGDEN--SNSAVAQLMQELKRLAKEYGV---AVILVHHT 188 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S-TT---HHHHHHHHHHHHHHHHHH-----EEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCC--CHHHHHHHHHHHHHHHHHcCC---EEEEEECC
Confidence 345666777777 57899999954432222111 122336777888888877776 68888774
No 339
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=41.38 E-value=48 Score=27.23 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHH-HHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 26 CHQTIA-LASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 26 ~~~~~~-l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
..++.. |.++||+|+.+-++-+...+... ..+...+-.+|+..+.+.|++ +++++=.
T Consensus 13 SsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~--~~c~~~~d~~~a~~va~~LgI---p~~v~d~ 70 (356)
T PF03054_consen 13 SSVAAALLKEQGYDVIGVTMRNWDEEDESG--KSCCSEEDIEDARRVAEKLGI---PHYVVDL 70 (356)
T ss_dssp HHHHHHHHHHCT-EEEEEEEE-SS-SSSHH---HHHHHHHHHHHHHHHHHHT-----EEEEET
T ss_pred HHHHHHHHHhhcccceEEEEEEeccccccC--CCCCchhhHHHHHHHHHhcCC---CEEEECh
Confidence 334444 55679999999887665533322 234556677889999999998 5666543
No 340
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=40.58 E-value=36 Score=26.60 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=49.5
Q ss_pred CCCceEEEecCCCCcc--hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHH-HHHHHHhcCCCCCcEE
Q 038482 7 GQGPEILFLYGFPELR--YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD-LIGLIDLVAPNDEKVF 83 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~d-l~~~~~~~~~~~~~~~ 83 (234)
+..|+||++.|+-+++ ..-..++..|...|++|+++..| |-++...+ +-.+...+... +.+.
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P--------------t~eE~~~p~lWRfw~~lP~~-G~i~ 117 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP--------------SAEELDHDFLWRIHKALPER-GEIG 117 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC--------------CHHHHcCchHHHHHHhCCCC-CeEE
Confidence 3458999999997765 45688888898889999998543 23344444 34556666543 6788
Q ss_pred EEEeChHHHH
Q 038482 84 VVGHDSGTYM 93 (234)
Q Consensus 84 l~GhS~Gg~i 93 (234)
++=-|+=+-+
T Consensus 118 IF~RSWY~~v 127 (264)
T TIGR03709 118 IFNRSHYEDV 127 (264)
T ss_pred EEcCccccch
Confidence 8777764443
No 341
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=39.48 E-value=28 Score=24.80 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=29.4
Q ss_pred cCCCCCCCCccc-ccccccHHHHHHHH----HHHHHhcCCC--CCcEEEEEeChHHH
Q 038482 43 DLRGFGDTDELL-EMTSYTCFHVIGDL----IGLIDLVAPN--DEKVFVVGHDSGTY 92 (234)
Q Consensus 43 D~~G~G~S~~~~-~~~~~~~~~~a~dl----~~~~~~~~~~--~~~~~l~GhS~Gg~ 92 (234)
-+-|||...... ....++.+++|.-+ ..+-+..++. ++++.|+|=||+..
T Consensus 60 ~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 60 QLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 344788772221 22467888888888 4444444332 48999999999887
No 342
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=39.32 E-value=55 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.5
Q ss_pred cEEEEEeChHHHHHHHHHHhcc
Q 038482 81 KVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 81 ~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
.-.+.|-|.|+.++..++...+
T Consensus 37 ~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 37 ARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CCeEEEEcHHHHHHHHHHcCCC
Confidence 3568899999999999998654
No 343
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=39.19 E-value=29 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred EEEEeChHHHHHHHHHHh
Q 038482 83 FVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~ 100 (234)
.+.|.|.||.+|..++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 677999999999999864
No 344
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.17 E-value=1.8e+02 Score=22.62 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|.++|.--..--..-.+.+.+.+.+.|. -++++|+| -+.++++...++..++ +.+.++.-+
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp----------------~ee~~~~~~~~~~~gl--~~I~lvap~ 152 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLP----------------PEEAEELRAAAKKHGL--DLIFLVAPT 152 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCC----------------HHHHHHHHHHHHHcCC--cEEEEeCCC
Confidence 4455554444344456678888888775 57778875 1467788888899999 889888887
Q ss_pred hHHHHHHHHHHhccccc
Q 038482 89 SGTYMACFLCSFRANRI 105 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~~v 105 (234)
.----.-.++...+.-|
T Consensus 153 t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 153 TTDERLKKIASHASGFV 169 (258)
T ss_pred CCHHHHHHHHHhCCCcE
Confidence 75544445555444433
No 345
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=39.06 E-value=1.9e+02 Score=23.65 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=55.5
Q ss_pred cccccC-------CCceEEEecCCCCcchhhHHHHHHHHhc--CCeEEeecCCCCCCCCc-ccc----------------
Q 038482 2 HVAEKG-------QGPEILFLYGFPELRYSRCHQTIALASL--SYRAVAPDLRGFGDTDE-LLE---------------- 55 (234)
Q Consensus 2 ~~~~~g-------~~~~lv~ihG~~~~~~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~-~~~---------------- 55 (234)
||...| .+++=+|+||.|... .-..+-++|.++ +..|+..|.-+.-.-+. ..+
T Consensus 197 hy~ttg~EI~~q~~g~vDi~V~gaGTGG-TitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~ 275 (362)
T KOG1252|consen 197 HYETTGPEIWRQLDGKVDIFVAGAGTGG-TITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPT 275 (362)
T ss_pred ccccccHHHHHHhcCCCCEEEeccCCCc-eeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCcc
Confidence 566666 256668888886543 233344555543 47888877544221111 000
Q ss_pred -cccccHHHHH----HHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHH-Hhccccccceeeec
Q 038482 56 -MTSYTCFHVI----GDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLC-SFRANRIKALVNLS 112 (234)
Q Consensus 56 -~~~~~~~~~a----~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a-~~~p~~v~~lvl~~ 112 (234)
.+...+++++ ++....-..+.. +.=.++|-|-|+.++..+- ++.|+.-.+++++-
T Consensus 276 ~ld~~~vd~~~~~~~d~A~~~Ar~La~--eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~ 336 (362)
T KOG1252|consen 276 TLDTKLVDEVLKVSSDEAIEMARRLAL--EEGLLVGISSGANVAAALKLAKRPENAGKLIVVT 336 (362)
T ss_pred ccchHHHHHHHHhCCHHHHHHHHHHHH--hhCeeecccchHHHHHHHHHHhccccCCcEEEEE
Confidence 0111222222 222223344444 6678999999996653332 34566555666554
No 346
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=38.60 E-value=1.5e+02 Score=22.33 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCcchh-hHHHHHHHHhcCCe-EEeecCC
Q 038482 8 QGPEILFLYGFPELRYS-RCHQTIALASLSYR-AVAPDLR 45 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~-~~~~~~~l~~~g~~-v~~~D~~ 45 (234)
.++.|++++-.+..... .+.+.+.|.+.|.+ +..++..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~ 67 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVID 67 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccC
Confidence 46788888877765443 45566667776763 5556554
No 347
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=38.54 E-value=72 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=22.1
Q ss_pred eEEeecCCCCCCCCcccc-cccccH----HHHHHHHHHHHHhcCC
Q 038482 38 RAVAPDLRGFGDTDELLE-MTSYTC----FHVIGDLIGLIDLVAP 77 (234)
Q Consensus 38 ~v~~~D~~G~G~S~~~~~-~~~~~~----~~~a~dl~~~~~~~~~ 77 (234)
++|++| ||||..++-.. .....- .+++.-+...++..|.
T Consensus 1 k~I~iD-pGHGg~d~GA~~~~g~~E~~~~l~ia~~l~~~L~~~G~ 44 (189)
T TIGR02883 1 KIIVID-PGHGGIDGGAVGKDGTLEKDITLEIALKLKDYLQEQGA 44 (189)
T ss_pred CEEEEe-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCC
Confidence 368888 79998775441 111222 2445555666666665
No 348
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=38.32 E-value=1.6e+02 Score=23.53 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=44.1
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCC-------Cccc--ccc----cccHHHHHHHHHHHHHhcC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDT-------DELL--EMT----SYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S-------~~~~--~~~----~~~~~~~a~dl~~~~~~~~ 76 (234)
|-|+|.-|.++. .+.|+..||.|+.+|+.---.- .-+. +.+ .-+.+.+.+.+.+.++..|
T Consensus 253 Pmi~fakG~g~~-------Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 253 PMILFAKGSGGA-------LEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred ceEEEEcCcchH-------HHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 677888777654 6788888999999997531110 0000 111 1266777888888888888
Q ss_pred CCCCcEEEEEeC
Q 038482 77 PNDEKVFVVGHD 88 (234)
Q Consensus 77 ~~~~~~~l~GhS 88 (234)
-. +-+.=+||.
T Consensus 326 ~~-ryI~NLGHG 336 (359)
T KOG2872|consen 326 KS-RYIANLGHG 336 (359)
T ss_pred cc-ceEEecCCC
Confidence 61 334445764
No 349
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=38.25 E-value=42 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.1
Q ss_pred CcEEEEEeChHHHHHHHHHHh
Q 038482 80 EKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
.--.+.|-|.||.+++.++..
T Consensus 27 ~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 27 RFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp T-SEEEEECCHHHHHHHHHTC
T ss_pred CccEEEEcChhhhhHHHHHhC
Confidence 445889999999999888865
No 350
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.97 E-value=2.7e+02 Score=24.09 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=56.0
Q ss_pred CceEEEecCCCCc---chhhHHHHHHHHhcCCeEEeecCCC----CCCCCcccccccccHHHHHHHHHHHHHh---cCCC
Q 038482 9 GPEILFLYGFPEL---RYSRCHQTIALASLSYRAVAPDLRG----FGDTDELLEMTSYTCFHVIGDLIGLIDL---VAPN 78 (234)
Q Consensus 9 ~~~lv~ihG~~~~---~~~~~~~~~~l~~~g~~v~~~D~~G----~G~S~~~~~~~~~~~~~~a~dl~~~~~~---~~~~ 78 (234)
+.|+++++.+... +......+..|.+.|+.|+-++. | +|...... -...++.++.+..++.. -.+.
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~-g~lA~~g~~G~Gr---m~e~~~I~~~v~~~~~~~~~~~l~ 255 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNA-GEMAERGEAGVGR---MAEPLEIAAAAEALLRPPQPKPLA 255 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCC-CccccCCCcCCCC---CCCHHHHHHHHHHHHhhccccccC
Confidence 4688888876554 33344667889888998886653 2 23222211 23556666666666532 1111
Q ss_pred C--------------CcEEEEEeChHHHHHHHHHHhccccccceeeeccCCC
Q 038482 79 D--------------EKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVVFN 116 (234)
Q Consensus 79 ~--------------~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 116 (234)
+ +++-.++.---|-++..+|...-.+-..+.+++++..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 1 3454444433444444444433344566777775543
No 351
>PLN02591 tryptophan synthase
Probab=37.43 E-value=1.8e+02 Score=22.57 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=52.1
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|.++|.--..--..-.+.+.+.+.+.|. -++.+|+| -+..+.+.+.++..++ ..+.++.-+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP----------------~ee~~~~~~~~~~~gl--~~I~lv~Pt 141 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLP----------------LEETEALRAEAAKNGI--ELVLLTTPT 141 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCC--eEEEEeCCC
Confidence 4454444333334456778888888764 58888886 2567788888899999 999999877
Q ss_pred hHHHHHHHHHHhccccc
Q 038482 89 SGTYMACFLCSFRANRI 105 (234)
Q Consensus 89 ~Gg~ia~~~a~~~p~~v 105 (234)
.----.-..+...+.-+
T Consensus 142 t~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 142 TPTERMKAIAEASEGFV 158 (250)
T ss_pred CCHHHHHHHHHhCCCcE
Confidence 76544445555444433
No 352
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=37.20 E-value=54 Score=23.30 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH
Q 038482 36 SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT 91 (234)
Q Consensus 36 g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg 91 (234)
+-.++++|-.| ...+-.++|+.+..+...-.- .=+.++|-|.|=
T Consensus 67 ~~~~i~Ld~~G----------k~~sS~~fA~~l~~~~~~g~~--~i~F~IGG~~G~ 110 (155)
T PF02590_consen 67 NDYVILLDERG----------KQLSSEEFAKKLERWMNQGKS--DIVFIIGGADGL 110 (155)
T ss_dssp TSEEEEE-TTS----------EE--HHHHHHHHHHHHHTTS---EEEEEE-BTTB-
T ss_pred CCEEEEEcCCC----------ccCChHHHHHHHHHHHhcCCc--eEEEEEecCCCC
Confidence 46788888876 456777888888877655222 235788888873
No 353
>PRK06849 hypothetical protein; Provisional
Probab=36.90 E-value=1.5e+02 Score=24.52 Aligned_cols=62 Identities=5% Similarity=0.024 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhcCCeEEeecCCCCCCCCc--ccc------cccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 24 SRCHQTIALASLSYRAVAPDLRGFGDTDE--LLE------MTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v~~~D~~G~G~S~~--~~~------~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
.=..+++.|.+.|++|++.|......+.. ..+ ....+.+++.+.+.++++..++ .+++-+.+
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~i---d~vIP~~e 85 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENI---DLLIPTCE 85 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCC---CEEEECCh
Confidence 34567888999999999999764433211 010 0123456788899999988876 45555554
No 354
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=36.81 E-value=91 Score=23.16 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=33.4
Q ss_pred CceEEEecCCCCcchh---hHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh
Q 038482 9 GPEILFLYGFPELRYS---RCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL 74 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~---~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~ 74 (234)
+.+|+++||---.--. -....+.|.+.|.++-.-.++|-|-+- ..+..+++.++++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i---------~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI---------SPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-----------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------CHHHHHHHHHHHhh
Confidence 4589999999765432 345567788777777777766544332 24566667666653
No 355
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=36.53 E-value=2.2e+02 Score=22.63 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=47.3
Q ss_pred ecCCCCcchhhHHHHHHHHhcCCeEEee------cCCCCCCCCcccccccccHHHHHHHHHHHHHh---cCCCCCcEEEE
Q 038482 15 LYGFPELRYSRCHQTIALASLSYRAVAP------DLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL---VAPNDEKVFVV 85 (234)
Q Consensus 15 ihG~~~~~~~~~~~~~~l~~~g~~v~~~------D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~---~~~~~~~~~l~ 85 (234)
+||.-++.. .+..++..|++|+++ ..+|||...... ...++.+++.+-++. ++. -..++-
T Consensus 11 v~G~vGn~A----A~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v-----~~~e~l~~~l~~l~~~~~~~~--~davlt 79 (281)
T COG2240 11 VYGSVGNSA----AIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIV-----MPPEQLADLLNGLEAIDKLGE--CDAVLT 79 (281)
T ss_pred eecccccHh----HHHHHHHcCCceeeeceEEecCCCCCCCCCCcC-----CCHHHHHHHHHHHHhcccccc--cCEEEE
Confidence 455555433 344566778877664 689999865544 223333333333333 222 456777
Q ss_pred EeC----hHHHHHHHHHHhccccccceeeeccCCCC
Q 038482 86 GHD----SGTYMACFLCSFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 86 GhS----~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 117 (234)
|+= .+-.++-.+..-....-+.+++++|.+..
T Consensus 80 GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD 115 (281)
T COG2240 80 GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGD 115 (281)
T ss_pred ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccC
Confidence 762 22233322222222234477889986654
No 356
>PRK04148 hypothetical protein; Provisional
Probab=36.42 E-value=73 Score=22.05 Aligned_cols=45 Identities=9% Similarity=-0.082 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeecc
Q 038482 63 HVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 63 ~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 113 (234)
+.++.+.+.+..... .++..+|-..|..++..++.. -..++.++-
T Consensus 3 ~i~~~l~~~~~~~~~--~kileIG~GfG~~vA~~L~~~----G~~ViaIDi 47 (134)
T PRK04148 3 TIAEFIAENYEKGKN--KKIVELGIGFYFKVAKKLKES----GFDVIVIDI 47 (134)
T ss_pred HHHHHHHHhcccccC--CEEEEEEecCCHHHHHHHHHC----CCEEEEEEC
Confidence 444444443333223 679999999888888888743 224555554
No 357
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=36.18 E-value=98 Score=22.15 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcC--CCCCcEEEEEeC--hHHHHHHHHHHh
Q 038482 64 VIGDLIGLIDLVA--PNDEKVFVVGHD--SGTYMACFLCSF 100 (234)
Q Consensus 64 ~a~dl~~~~~~~~--~~~~~~~l~GhS--~Gg~ia~~~a~~ 100 (234)
.+.-+.++++..+ +.++++.++|.| .|--++.++..+
T Consensus 19 Tp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~ 59 (160)
T PF02882_consen 19 TPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK 59 (160)
T ss_dssp HHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC
Confidence 4556666776655 335899999999 577888777654
No 358
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=36.02 E-value=1.8e+02 Score=21.51 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=35.0
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV 75 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~ 75 (234)
-+++.|----...-+..+.+.+..+|..++.+|.- +.+-+++++|+.+++...
T Consensus 117 rVvV~ykDRL~RFGfe~le~~~~a~~~eivvv~~~------------e~~~eELveDlisIltsf 169 (193)
T COG2452 117 RVVVSYKDRLNRFGFELVEAVCKAHNVEIVVVNQE------------DKDSEELVEDLVSILTSF 169 (193)
T ss_pred EEEEEccchHhHHhHHHHHHHHHhcCcEEEEecCC------------CCCHHHHHHHHHHHHHHH
Confidence 34444444333334666667777788999998742 223399999999988665
No 359
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=36.01 E-value=68 Score=22.22 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=25.6
Q ss_pred eEEEecCCCCcchh--hHHHHHHHHhcCCeEEeecCCCCCCCC
Q 038482 11 EILFLYGFPELRYS--RCHQTIALASLSYRAVAPDLRGFGDTD 51 (234)
Q Consensus 11 ~lv~ihG~~~~~~~--~~~~~~~l~~~g~~v~~~D~~G~G~S~ 51 (234)
|+|.|=|...++.. -..+++.|.++||++.++=.-+||+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 46777777666644 367889999889999866444555543
No 360
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=35.50 E-value=13 Score=30.83 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=13.2
Q ss_pred CCceeEEeCCCCCccccCC
Q 038482 216 LLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 216 ~~~~~~~~~~agH~~~~e~ 234 (234)
+. ++..|.+|||+++.+|
T Consensus 384 ~l-tf~~V~~AGHmvP~dq 401 (415)
T PF00450_consen 384 NL-TFVTVRGAGHMVPQDQ 401 (415)
T ss_dssp TE-EEEEETT--SSHHHHS
T ss_pred cE-EEEEEcCCcccChhhC
Confidence 44 8899999999998765
No 361
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=35.34 E-value=2.4e+02 Score=23.28 Aligned_cols=43 Identities=5% Similarity=-0.268 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH-HHHHHHHHhcc
Q 038482 57 TSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT-YMACFLCSFRA 102 (234)
Q Consensus 57 ~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg-~ia~~~a~~~p 102 (234)
..|+.+.+++.+.+++++.+. .++|+|+|.=| -++-.+|.+..
T Consensus 98 ~~y~~e~~a~al~~li~~~~P---~~vL~~~T~~GrdlApRlAarL~ 141 (356)
T PLN00022 98 THPLAEPWAKLVVLAQQKGGY---SHILAASTSFGKNVLPRAAALLD 141 (356)
T ss_pred cccChHHHHHHHHHHHHhcCC---CEEEECCCCchhHHHHHHHHHhC
Confidence 467889999999999998876 67777666544 78888887643
No 362
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=34.46 E-value=22 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.0
Q ss_pred CCceeEEeCCCCCccccCC
Q 038482 216 LLEEVTIMEGVGHFINQEK 234 (234)
Q Consensus 216 ~~~~~~~~~~agH~~~~e~ 234 (234)
+. +++.+.+|||+++.|+
T Consensus 427 ~l-~~~~V~~AGH~vp~d~ 444 (462)
T PTZ00472 427 GF-SFVQVYNAGHMVPMDQ 444 (462)
T ss_pred Ce-EEEEECCCCccChhhH
Confidence 45 7888999999999875
No 363
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=34.37 E-value=38 Score=26.75 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.8
Q ss_pred EEEEeChHHHHHHHHHHhc
Q 038482 83 FVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~~ 101 (234)
.+.|.|.||.+|..++..+
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 7789999999999998754
No 364
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=34.22 E-value=1e+02 Score=27.49 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=27.5
Q ss_pred CceEEEecCCCCcch---hhHHHHHHHHhcCCe--EEeecCCCCCCCC
Q 038482 9 GPEILFLYGFPELRY---SRCHQTIALASLSYR--AVAPDLRGFGDTD 51 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~---~~~~~~~~l~~~g~~--v~~~D~~G~G~S~ 51 (234)
..|+++|||..-..- .=..+.++|..+|.. .+.+.--||+.+.
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~ 598 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSR 598 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCC
Confidence 469999999965332 234556777776654 4555445677665
No 365
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=34.20 E-value=65 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=21.5
Q ss_pred EEecCCCCcchhh--HHHHHHHHhcCCeEEeecC
Q 038482 13 LFLYGFPELRYSR--CHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 13 v~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D~ 44 (234)
.+..+-||.+... ..++..|+++|++|+.+|.
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 4455555555443 4567788888999999997
No 366
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=34.15 E-value=54 Score=25.08 Aligned_cols=70 Identities=9% Similarity=-0.066 Sum_probs=50.1
Q ss_pred CceEEEecCCCCcc--hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHH-HHHHHHhcCCCCCcEEEE
Q 038482 9 GPEILFLYGFPELR--YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD-LIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 9 ~~~lv~ihG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~d-l~~~~~~~~~~~~~~~l~ 85 (234)
.|.||++.|+-+++ ..-..+...|...|++|+++..| |-++...+ +-.+...+... +.+.++
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p--------------t~eE~~~p~lwRfw~~lP~~-G~i~IF 94 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP--------------SDRERTQWYFQRYVQHLPAA-GEIVLF 94 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC--------------CHHHHcChHHHHHHHhCCCC-CeEEEE
Confidence 48999999997765 45678888888889999998644 33455555 34566666543 678888
Q ss_pred EeChHHHH
Q 038482 86 GHDSGTYM 93 (234)
Q Consensus 86 GhS~Gg~i 93 (234)
=-|+=+-+
T Consensus 95 ~rSwY~~~ 102 (230)
T TIGR03707 95 DRSWYNRA 102 (230)
T ss_pred eCchhhhH
Confidence 77775554
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=33.95 E-value=2.6e+02 Score=22.82 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=39.7
Q ss_pred HhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccc--cccceee
Q 038482 33 ASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRAN--RIKALVN 110 (234)
Q Consensus 33 ~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~--~v~~lvl 110 (234)
...|++++.+|-+|.... -..+.+.+..+.+.... ..++++.-+.-|.-++.-+..+.+ .+.++|+
T Consensus 219 ~~~~~DvVLIDTaGr~~~----------~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT----------DANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HhCCCCEEEEECCCccCC----------cHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 344789999998875432 13344555555555555 566677666666666655554432 4566665
Q ss_pred e
Q 038482 111 L 111 (234)
Q Consensus 111 ~ 111 (234)
-
T Consensus 287 T 287 (336)
T PRK14974 287 T 287 (336)
T ss_pred e
Confidence 3
No 368
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.87 E-value=1.4e+02 Score=21.30 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChH
Q 038482 38 RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSG 90 (234)
Q Consensus 38 ~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~G 90 (234)
.++++|-+| ...+-.++|+.+....+.-.- +-+.++|-+.|
T Consensus 69 ~~i~LDe~G----------k~~sS~~fA~~l~~~~~~g~~--~i~F~IGGa~G 109 (157)
T PRK00103 69 RVIALDERG----------KQLSSEEFAQELERWRDDGRS--DVAFVIGGADG 109 (157)
T ss_pred EEEEEcCCC----------CcCCHHHHHHHHHHHHhcCCc--cEEEEEcCccc
Confidence 466666655 234445555555554322111 23455565555
No 369
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.66 E-value=1e+02 Score=22.17 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=20.3
Q ss_pred EEEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
-|++.|.|.+...=..+...|...|..+..++
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 46777777765544555555666677776663
No 370
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=33.60 E-value=24 Score=27.36 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=11.5
Q ss_pred CcEEEEEeChHHH
Q 038482 80 EKVFVVGHDSGTY 92 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ 92 (234)
..++++|||+|..
T Consensus 235 ~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 235 DEIIIYGHSLGEV 247 (270)
T ss_pred CEEEEEeCCCchh
Confidence 6899999999974
No 371
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=33.42 E-value=21 Score=27.16 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=42.5
Q ss_pred CceEEEecCCCCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHH-HHHHHHhcCCCCCcEEEE
Q 038482 9 GPEILFLYGFPELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGD-LIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~d-l~~~~~~~~~~~~~~~l~ 85 (234)
.|+||++.|+-+++. .-..+...|...|++|+++..| +-++...+ +-.+...+... +.+.++
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p--------------t~eE~~~p~lwRfw~~lP~~-G~I~if 94 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP--------------TDEELRRPFLWRFWRALPAR-GQIGIF 94 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS----------------HHHHTS-TTHHHHTTS--T-T-EEEE
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC--------------ChhHcCCCcHHHHHHhCCCC-CEEEEE
Confidence 368999999987764 4567777777778999999754 33444444 34555666442 678888
Q ss_pred EeChHHHHH
Q 038482 86 GHDSGTYMA 94 (234)
Q Consensus 86 GhS~Gg~ia 94 (234)
=-|+=.-+.
T Consensus 95 ~rSWY~~~l 103 (228)
T PF03976_consen 95 DRSWYEDVL 103 (228)
T ss_dssp ES-GGGGGT
T ss_pred ecchhhHHH
Confidence 777755443
No 372
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=33.42 E-value=1.9e+02 Score=21.50 Aligned_cols=35 Identities=14% Similarity=-0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
+.++.....++..+.. ...-++|.++|..+....+
T Consensus 62 ~~w~~~~~~~i~~~~~--p~~pvLGIC~G~Ql~A~~l 96 (198)
T COG0518 62 DPWLPREKDLIKDAGV--PGKPVLGICLGHQLLAKAL 96 (198)
T ss_pred cccchhHHHHHHHhCC--CCCCEEEEChhHHHHHHHh
Confidence 3378888999988887 6667999999997765554
No 373
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=32.91 E-value=36 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=15.2
Q ss_pred EEEEeChHHHHHHHHHH
Q 038482 83 FVVGHDSGTYMACFLCS 99 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~ 99 (234)
.+.|.|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 57799999999999986
No 374
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.89 E-value=2.3e+02 Score=22.18 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
|.++|.--.+--..-...+++.+.+.|. -++.+|+| -+..+++.+.++..++ ..+.++.-+
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP----------------~ee~~~~~~~~~~~gi--~~I~lv~Pt 154 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLP----------------YEESDYLISVCNLYNI--ELILLIAPT 154 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCC----------------HHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 4454443333333445677888888775 47778886 1347788888899999 899999888
Q ss_pred hHHHHHHHHHH
Q 038482 89 SGTYMACFLCS 99 (234)
Q Consensus 89 ~Gg~ia~~~a~ 99 (234)
.----...++.
T Consensus 155 T~~eri~~i~~ 165 (263)
T CHL00200 155 SSKSRIQKIAR 165 (263)
T ss_pred CCHHHHHHHHH
Confidence 75444444443
No 375
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=32.73 E-value=1.9e+02 Score=20.89 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHH
Q 038482 32 LASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT 91 (234)
Q Consensus 32 l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg 91 (234)
|.+.|++.+++|.-+.=-... ...-..++.+.+.++.+..+. +++.++-.|.|.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~----~~~i~~~~~~~~~~l~~~~~~--~~v~IvSNsaGs 89 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPY----EDEIPPEYAEWLNELKKQFGK--DRVLIVSNSAGS 89 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCC----cCcCCHHHHHHHHHHHHHCCC--CeEEEEECCCCc
Confidence 788899999999754311111 112224556666666666666 689999999863
No 376
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=32.49 E-value=88 Score=21.08 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=10.9
Q ss_pred HHHHHhcCCeEEee
Q 038482 29 TIALASLSYRAVAP 42 (234)
Q Consensus 29 ~~~l~~~g~~v~~~ 42 (234)
.+.|.+.|++|+.+
T Consensus 100 ~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 100 NSRLQELGWRVLRV 113 (117)
T ss_pred HHHHHHCcCEEEEE
Confidence 45577889999876
No 377
>PRK06490 glutamine amidotransferase; Provisional
Probab=32.41 E-value=2.3e+02 Score=21.72 Aligned_cols=84 Identities=17% Similarity=0.033 Sum_probs=43.9
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCc-----cc------c-cccccHHHHHHHHHHHHHhcC
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDE-----LL------E-MTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~-----~~------~-~~~~~~~~~a~dl~~~~~~~~ 76 (234)
...+|+.|--.+.......+. .+.|+.+-.++.. .|...+ .. . ...++-..+...+.++++..-
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l---~~~g~~~~v~~~~-~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~ 83 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLL---QERGYPLDIRRPR-LGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPL 83 (239)
T ss_pred ceEEEEecCCCCCChHHHHHH---HHCCCceEEEecc-CCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHH
Confidence 456677787766666554444 4445444443311 111000 00 0 012233345566666666543
Q ss_pred CCCCcEEEEEeChHHHHHHHHH
Q 038482 77 PNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 77 ~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
. .+.-++|.++|..+.....
T Consensus 84 ~--~~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 84 K--ENKPFLGICLGAQMLARHL 103 (239)
T ss_pred H--CCCCEEEECHhHHHHHHHc
Confidence 3 4567999999998776654
No 378
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=32.12 E-value=1.2e+02 Score=21.34 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 65 IGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 65 a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
+..+..+.++-.. ...-.+.|.|.|+.++..++
T Consensus 14 ~gvl~~l~~~~~~-~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 14 AGVLSALAERGLL-DCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHHhCCc-cCCCEEEEEcHHHHHHHHHh
Confidence 3444444443222 13347889999999999988
No 379
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.46 E-value=72 Score=24.17 Aligned_cols=35 Identities=20% Similarity=0.032 Sum_probs=22.0
Q ss_pred CCceEEEecCCCCcchh-----hHHHHHHHHhcCCeEEee
Q 038482 8 QGPEILFLYGFPELRYS-----RCHQTIALASLSYRAVAP 42 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 42 (234)
+++.|++.+|....... |..+++.|.+.+++|+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~ 143 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL 143 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE
Confidence 35788888888774444 677888898887777765
No 380
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=31.39 E-value=1.3e+02 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=16.4
Q ss_pred hHHHHHHHHhcC--CeEEeecCCCCCCCC
Q 038482 25 RCHQTIALASLS--YRAVAPDLRGFGDTD 51 (234)
Q Consensus 25 ~~~~~~~l~~~g--~~v~~~D~~G~G~S~ 51 (234)
+...++.+.+.| ..=+.+| ||.|...
T Consensus 152 ~~~~i~~~~~~Gi~~~~IilD-Pg~g~~k 179 (258)
T cd00423 152 LEERVEAATEAGIPPEDIILD-PGIGFGK 179 (258)
T ss_pred HHHHHHHHHHcCCCHHHEEEe-CCCCccC
Confidence 344556666777 3467788 6777554
No 381
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=31.06 E-value=2.5e+02 Score=21.61 Aligned_cols=73 Identities=8% Similarity=-0.075 Sum_probs=43.0
Q ss_pred EEEecCCCCcchhhHHHHHHHHh--cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 12 ILFLYGFPELRYSRCHQTIALAS--LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~~~~l~~--~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
+.+..-...+.......++.+.. .+..++++|+-+.=.+..........+...++.+.++.+.+++ +++++.+
T Consensus 104 l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i---~vi~~sQ 178 (259)
T PF03796_consen 104 LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI---PVIALSQ 178 (259)
T ss_dssp EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS---EEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC---eEEEccc
Confidence 44444334455555555666554 3678999997765333322211234566778888888888887 5555543
No 382
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=30.87 E-value=1.9e+02 Score=24.25 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=27.5
Q ss_pred CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 37 YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 37 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
|+||++|.|.+++|.+.. ..-..++.+-+...++-+.. .-..++--
T Consensus 291 fDlIilDPPsF~r~k~~~---~~~~rdy~~l~~~~~~iL~p--gG~l~~~s 336 (393)
T COG1092 291 FDLIILDPPSFARSKKQE---FSAQRDYKDLNDLALRLLAP--GGTLVTSS 336 (393)
T ss_pred ccEEEECCcccccCcccc---hhHHHHHHHHHHHHHHHcCC--CCEEEEEe
Confidence 999999999999997644 11224444444444444444 33444433
No 383
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.59 E-value=68 Score=21.54 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHH
Q 038482 63 HVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMAC 95 (234)
Q Consensus 63 ~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~ 95 (234)
.....++-.+..++. +.++++||+--|++..
T Consensus 44 ~~~~sl~~av~~l~v--~~ivV~gHt~CG~v~a 74 (119)
T cd00382 44 DVLASLEYAVEVLGV--KHIIVCGHTDCGAVKA 74 (119)
T ss_pred cHHHHHHHHHHhhCC--CEEEEEccCCCcHHHH
Confidence 455667777788999 9999999987776653
No 384
>PRK04435 hypothetical protein; Provisional
Probab=30.49 E-value=1.9e+02 Score=20.23 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCC--CCCCCCcccccccccHHHHHHHHHHHHHhc-CCCCCcEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLR--GFGDTDELLEMTSYTCFHVIGDLIGLIDLV-APNDEKVFV 84 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~--G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~-~~~~~~~~l 84 (234)
.+..+-+.-...........+...+++.|.++..+... ..|...-.-.....+.+...+++.+-++.+ +. .++-+
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV--~~V~i 143 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGV--EKVEL 143 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCc--EEEEE
Confidence 34444443334445567888999999988999988642 222111111111223333334444444333 55 67777
Q ss_pred EEe
Q 038482 85 VGH 87 (234)
Q Consensus 85 ~Gh 87 (234)
+|.
T Consensus 144 ~~~ 146 (147)
T PRK04435 144 IGM 146 (147)
T ss_pred Eec
Confidence 774
No 385
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=30.22 E-value=72 Score=24.08 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=17.6
Q ss_pred EEecCCCCcchhhHHHHHHHHhcCCeEEeecC
Q 038482 13 LFLYGFPELRYSRCHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 13 v~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~ 44 (234)
||+.|-|... -+..|+++|+.|+++|.
T Consensus 41 vL~~gCG~G~-----da~~LA~~G~~V~avD~ 67 (218)
T PRK13255 41 VLVPLCGKSL-----DMLWLAEQGHEVLGVEL 67 (218)
T ss_pred EEEeCCCChH-----hHHHHHhCCCeEEEEcc
Confidence 4445554442 25566778999999995
No 386
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=30.08 E-value=59 Score=34.33 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
+.++++..|+ ++-.++|||+|=+.|+..+
T Consensus 664 l~~lL~~~Gi--~Pd~v~GHSlGE~aAa~aA 692 (2582)
T TIGR02813 664 QYKLFTQAGF--KADMTAGHSFGELSALCAA 692 (2582)
T ss_pred HHHHHHHcCC--ccceeecCCHHHHHHHHHh
Confidence 3455677899 8899999999998887766
No 387
>PRK13529 malate dehydrogenase; Provisional
Probab=30.06 E-value=2.5e+02 Score=24.79 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=45.9
Q ss_pred eEEEecCCCCcchhhHH-HHHHHHhcCC-------eEEeecCCCCCCCCcccccccccHHHHH---------------HH
Q 038482 11 EILFLYGFPELRYSRCH-QTIALASLSY-------RAVAPDLRGFGDTDELLEMTSYTCFHVI---------------GD 67 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~-~~~~l~~~g~-------~v~~~D~~G~G~S~~~~~~~~~~~~~~a---------------~d 67 (234)
.-+++.|.|..+---.. +...+...|. +++.+|-.|-=..++..- . ..-..+| .+
T Consensus 296 ~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l-~-~~k~~fa~~~~~~~~~~~~~~~~~ 373 (563)
T PRK13529 296 QRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDL-L-DFQKPYARKREELADWDTEGDVIS 373 (563)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc-h-HHHHHHhhhcccccccccccCCCC
Confidence 44666788876655544 4455555566 899999988544333220 0 0111122 24
Q ss_pred HHHHHHhcCCCCCcEEEEEeCh-HHHHHHH
Q 038482 68 LIGLIDLVAPNDEKVFVVGHDS-GTYMACF 96 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~GhS~-Gg~ia~~ 96 (234)
+.++++.. ++=+|+|-|- ||.+.-.
T Consensus 374 L~e~v~~~----kPtvLIG~S~~~g~Ft~e 399 (563)
T PRK13529 374 LLEVVRNV----KPTVLIGVSGQPGAFTEE 399 (563)
T ss_pred HHHHHhcc----CCCEEEEecCCCCCCCHH
Confidence 55666543 5679999998 7755433
No 388
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=30.05 E-value=1.3e+02 Score=21.44 Aligned_cols=66 Identities=11% Similarity=-0.069 Sum_probs=30.3
Q ss_pred CcchhhHHHHHHHHhcCCeEEeecC--CCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHH
Q 038482 20 ELRYSRCHQTIALASLSYRAVAPDL--RGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYM 93 (234)
Q Consensus 20 ~~~~~~~~~~~~l~~~g~~v~~~D~--~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~i 93 (234)
++...|+.+-+.|.+ .+++++|. .-|-.|.++. +..-+-+ +++-...+...+. ++.++=..+|+..
T Consensus 38 GNGRTydHLRe~~p~--R~I~vfDR~l~~hp~~~P~~--~~~ilGd-i~~tl~~~~~~g~---~a~laHaD~G~g~ 105 (160)
T PF12692_consen 38 GNGRTYDHLREIFPD--RRIYVFDRALACHPSSTPPE--EDLILGD-IRETLPALARFGA---GAALAHADIGTGD 105 (160)
T ss_dssp TTSHHHHHHHHH--S--S-EEEEESS--S-GGG---G--GGEEES--HHHHHHHHHHH-S----EEEEEE----S-
T ss_pred CCCccHHHHHHhCCC--CeEEEEeeecccCCCCCCch--Hheeecc-HHHHhHHHHhcCC---ceEEEEeecCCCC
Confidence 567889998888876 68999994 3344444333 2222222 2222222555564 8899999999854
No 389
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=30.04 E-value=72 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEe
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVA 41 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~ 41 (234)
..+++||.+|.+.. .+..+++.|.+.|.+++.
T Consensus 40 ~~~pLVCt~G~p~~--A~~~LL~~L~~~g~~l~y 71 (152)
T PF09664_consen 40 SCPPLVCTSGQPSA--AARRLLDRLAAAGARLYY 71 (152)
T ss_pred CCCeEEEcCCcHHH--HHHHHHHHHHhCCCEEEE
Confidence 46899999998765 445778888877776554
No 390
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=2.9e+02 Score=25.66 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCeEEeec-----CCCCCCCCcccccccccHHHHHHHHHHHHHhcCC-CCCcEEEEEeChHHHHHHHHH
Q 038482 25 RCHQTIALASLSYRAVAPD-----LRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP-NDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 25 ~~~~~~~l~~~g~~v~~~D-----~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~-~~~~~~l~GhS~Gg~ia~~~a 98 (234)
-+.+.+.-.+..=.||.+| .|..|.|...- --++..+..+.+-+|.+.. +.+.+.++|-+-=--+. .=|
T Consensus 753 VR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG----GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL-DpA 827 (953)
T KOG0736|consen 753 VREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG----GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL-DPA 827 (953)
T ss_pred HHHHHHHhhccCCeEEEeccccccCccCCCCCCcc----ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc-Chh
Confidence 3444444444324567776 45556554433 4778899999999998853 23789999865433322 334
Q ss_pred HhccccccceeeeccCCCC
Q 038482 99 SFRANRIKALVNLSVVFNP 117 (234)
Q Consensus 99 ~~~p~~v~~lvl~~~~~~~ 117 (234)
+.+|.|+.+++-+++.-..
T Consensus 828 LLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 828 LLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred hcCCCccceeEEecCCccH
Confidence 5578899999999976543
No 391
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=29.88 E-value=1.7e+02 Score=21.45 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=20.6
Q ss_pred EEecCCCCcch-hh-HHHHHHHHh----cCCeEEeecCCCCCCC
Q 038482 13 LFLYGFPELRY-SR-CHQTIALAS----LSYRAVAPDLRGFGDT 50 (234)
Q Consensus 13 v~ihG~~~~~~-~~-~~~~~~l~~----~g~~v~~~D~~G~G~S 50 (234)
++|-|..+++. .+ ..++..+.. ...+++.+|..|.+.+
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~ 84 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLA 84 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCG
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccc
Confidence 34445555443 33 345555555 4589999999876443
No 392
>PF08197 TT_ORF2a: pORF2a truncated protein; InterPro: IPR013267 Most isolated ORF2 of TT virus (TTV) encode a 49 amino acid protein (pORF2a) because of an in-frame stop codon. ORF2s isolated from G1 TTV encode a 202 amino acid protein (pORF2ab) [].
Probab=29.84 E-value=42 Score=17.95 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.6
Q ss_pred eEEeecCCCCCCC
Q 038482 38 RAVAPDLRGFGDT 50 (234)
Q Consensus 38 ~v~~~D~~G~G~S 50 (234)
.+-+-|+||||+.
T Consensus 36 airardwpg~gq~ 48 (49)
T PF08197_consen 36 AIRARDWPGYGQG 48 (49)
T ss_pred ceEeccCCCcCCC
Confidence 5777899999974
No 393
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.53 E-value=2.5e+02 Score=21.27 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCeEEeecC
Q 038482 27 HQTIALASLSYRAVAPDL 44 (234)
Q Consensus 27 ~~~~~l~~~g~~v~~~D~ 44 (234)
..+..+.+.|..|+.+|.
T Consensus 74 ~~i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 74 SHYERLAERGLPVVLVNG 91 (273)
T ss_pred HHHHHHHhCCCCEEEEcC
Confidence 334555555677777764
No 394
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.52 E-value=2.1e+02 Score=24.18 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=29.3
Q ss_pred CceEEEecCCCCcc---hhhHHHHHHHHhc--CCeEEeecCCCCCC
Q 038482 9 GPEILFLYGFPELR---YSRCHQTIALASL--SYRAVAPDLRGFGD 49 (234)
Q Consensus 9 ~~~lv~ihG~~~~~---~~~~~~~~~l~~~--g~~v~~~D~~G~G~ 49 (234)
.|.+|+|.+.+.+. ++...+++.+.+. |..|+.+.-+|+..
T Consensus 97 ~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g 142 (427)
T PRK02842 97 NISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLET 142 (427)
T ss_pred CCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccc
Confidence 56777777776643 4677777777765 67888888888743
No 395
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.30 E-value=2.5e+02 Score=21.08 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=35.6
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHH-HHHHHhcCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDL-IGLIDLVAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl-~~~~~~~~~ 77 (234)
.+.|+|+++-.......-...++.|.+.|+.++-++. |+ =. .+.+++++++-+ ..+++.+|+
T Consensus 129 ~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~-g~--y~-----~p~~~~~~~~f~~~~~l~~lg~ 191 (204)
T PRK05920 129 ERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIP-AF--YH-----KPQTIDDLVDFVVARILDLLGI 191 (204)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcc-cc--cC-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 4557777764222222235667788888888766553 22 11 233566666664 366788886
No 396
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=29.19 E-value=1.1e+02 Score=24.76 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=25.0
Q ss_pred CceEEEecCCCCcchh-----hHHHHHHHHhcCCeEEe
Q 038482 9 GPEILFLYGFPELRYS-----RCHQTIALASLSYRAVA 41 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-----~~~~~~~l~~~g~~v~~ 41 (234)
...+|++.|++++..+ |+.+.+.|.++|..+..
T Consensus 248 ~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~~i~i~~ 285 (323)
T COG2376 248 DEVAVLVNGLGATPLMELYILYNRVARLLAAKGITIER 285 (323)
T ss_pred CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5689999999998754 56777888887765443
No 397
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=29.14 E-value=65 Score=26.15 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.7
Q ss_pred EEEEEeChHHHHHHHHHH
Q 038482 82 VFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 82 ~~l~GhS~Gg~ia~~~a~ 99 (234)
-.++|||+|=+.|+..+-
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 367999999988887763
No 398
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=29.14 E-value=1.8e+02 Score=23.83 Aligned_cols=30 Identities=10% Similarity=-0.074 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHhcCCeEEe-ecCCCCCCC
Q 038482 21 LRYSRCHQTIALASLSYRAVA-PDLRGFGDT 50 (234)
Q Consensus 21 ~~~~~~~~~~~l~~~g~~v~~-~D~~G~G~S 50 (234)
+...+..++++.++.|.+||- +|.|||-.+
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a 98 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGS 98 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHH
Confidence 667788889888888888775 799998765
No 399
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.98 E-value=1.7e+02 Score=21.06 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=36.2
Q ss_pred eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC-hHHHHHHHHHHhc
Q 038482 38 RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD-SGTYMACFLCSFR 101 (234)
Q Consensus 38 ~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS-~Gg~ia~~~a~~~ 101 (234)
+++.++-+.. ..++.+.+++.+.++++..+. .++|+|++ .|+.++-.+|.+.
T Consensus 62 ~v~~~~~~~~---------~~~~~~~~a~~l~~~i~~~~p---~~Vl~g~t~~g~~la~rlA~~L 114 (181)
T cd01985 62 KVLLVEDPAL---------AGYDPEATAKALAALIKKEKP---DLILAGATSIGKQLAPRVAALL 114 (181)
T ss_pred EEEEEecCcc---------cCCChHHHHHHHHHHHHHhCC---CEEEECCcccccCHHHHHHHHh
Confidence 5666664322 346778899999999988765 67777664 5667887777764
No 400
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=28.84 E-value=1.6e+02 Score=22.92 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=47.1
Q ss_pred eEEEecCCCCcchhhHHHH-HHHHhcC-------CeEEeecCCCCCCCCccc-ccccccH------HHHHHHHHHHHHhc
Q 038482 11 EILFLYGFPELRYSRCHQT-IALASLS-------YRAVAPDLRGFGDTDELL-EMTSYTC------FHVIGDLIGLIDLV 75 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~-~~l~~~g-------~~v~~~D~~G~G~S~~~~-~~~~~~~------~~~a~dl~~~~~~~ 75 (234)
.-+++.|.|..+---..++ ..+.+.| -+++.+|..|-=..+++. .+....+ ..-..+|.++++..
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~ 105 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAA 105 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhh
Confidence 3456778877665554443 3343322 379999998844333322 1000111 11224677777765
Q ss_pred CCCCCcEEEEEeCh-HHHHHHHHH
Q 038482 76 APNDEKVFVVGHDS-GTYMACFLC 98 (234)
Q Consensus 76 ~~~~~~~~l~GhS~-Gg~ia~~~a 98 (234)
++=+|+|-|- ||.+.-...
T Consensus 106 ----kptvlIG~S~~~g~ft~evv 125 (254)
T cd00762 106 ----KPDFLIGVSRVGGAFTPEVI 125 (254)
T ss_pred ----CCCEEEEeCCCCCCCCHHHH
Confidence 4578999998 887654444
No 401
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=28.48 E-value=1.1e+02 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=23.2
Q ss_pred hHHHHHHHHhcCCeEEeecCCCCCCCCc
Q 038482 25 RCHQTIALASLSYRAVAPDLRGFGDTDE 52 (234)
Q Consensus 25 ~~~~~~~l~~~g~~v~~~D~~G~G~S~~ 52 (234)
+...++.|.+.|.+|..+|..|.|.+..
T Consensus 59 f~amve~L~~~GvdV~ifddtg~~~TPD 86 (318)
T COG4874 59 FNAMVEGLRQAGVDVVIFDDTGQGETPD 86 (318)
T ss_pred HHHHHHHHHhcCceEEEeecCCCCCCCc
Confidence 5566788988999999999998887654
No 402
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.34 E-value=1.5e+02 Score=18.32 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHHHHh----cCCCCCcEEEEEeChHHHHHHHHHHhc
Q 038482 58 SYTCFHVIGDLIGLIDL----VAPNDEKVFVVGHDSGTYMACFLCSFR 101 (234)
Q Consensus 58 ~~~~~~~a~dl~~~~~~----~~~~~~~~~l~GhS~Gg~ia~~~a~~~ 101 (234)
+.-....+++..+.++. -+. +++.++|-|.|=-+|...++.+
T Consensus 16 P~GC~~~V~~qI~yvk~~~~~~Gp--K~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 16 PVGCARNVENQIEYVKSQGKINGP--KKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHC---TS---SEEEEES-SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCC--ceEEEEecCCcccHHHHHHHHh
Confidence 34455555555555554 234 7899999999988886666553
No 403
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.24 E-value=3.3e+02 Score=22.18 Aligned_cols=81 Identities=11% Similarity=0.011 Sum_probs=49.4
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
.+.||++=-|+ ++...|...++.+.+.|. +++... .-|.=|......++..+. .+-+..+. ++-+..
T Consensus 133 ~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~Llh----C~s~YP~~~~~~nL~~i~----~lk~~f~~---pVG~SD 200 (327)
T TIGR03586 133 TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLK----CTSSYPAPLEDANLRTIP----DLAERFNV---PVGLSD 200 (327)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEe----cCCCCCCCcccCCHHHHH----HHHHHhCC---CEEeeC
Confidence 36789999999 588899999999987765 455543 222222222334444332 12122333 777889
Q ss_pred eChHHHHHHHHHHh
Q 038482 87 HDSGTYMACFLCSF 100 (234)
Q Consensus 87 hS~Gg~ia~~~a~~ 100 (234)
|+.|-.+++...+.
T Consensus 201 Ht~G~~~~~aAva~ 214 (327)
T TIGR03586 201 HTLGILAPVAAVAL 214 (327)
T ss_pred CCCchHHHHHHHHc
Confidence 99997666555443
No 404
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.21 E-value=68 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=26.6
Q ss_pred eEEEecCCCCcch-hh-HHHHHHHHhcCCeEEeecC
Q 038482 11 EILFLYGFPELRY-SR-CHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 11 ~lv~ihG~~~~~~-~~-~~~~~~l~~~g~~v~~~D~ 44 (234)
++|++-|+++++. .+ ..+++.|.+.+++++...-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 6899999998874 45 5678888888888887653
No 405
>PLN02735 carbamoyl-phosphate synthase
Probab=28.19 E-value=1.3e+02 Score=28.97 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCeEEeecCCCCCCCCccc-ccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHh
Q 038482 27 HQTIALASLSYRAVAPDLRGFGDTDELL-EMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 27 ~~~~~l~~~g~~v~~~D~~G~G~S~~~~-~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~ 100 (234)
..+.+|.+.|+.++++|.-..-.|.... ....|-..-..+++.++++..++ . .++ -++||..++.+|..
T Consensus 599 ~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~--d-~Vi--~~~Ggq~~l~la~~ 668 (1102)
T PLN02735 599 HASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERP--D-GII--VQFGGQTPLKLALP 668 (1102)
T ss_pred HHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCC--C-EEE--ECCCchHHHHHHHH
Confidence 3578899999999999854433332211 01123233347888888888777 3 333 24677776666554
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=27.96 E-value=1.6e+02 Score=23.19 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=35.1
Q ss_pred eEEEecCCCCcchhh--HHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-cCCCCCcEEEE
Q 038482 11 EILFLYGFPELRYSR--CHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-VAPNDEKVFVV 85 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~~~~~~~~~l~ 85 (234)
|||++=|+++++..- ..+.+.|.+.++.|+.++--..+....... +.......-..+...++. +.- +.++++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~-~~~~Ek~~R~~l~s~v~r~ls~--~~iVI~ 76 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYA-DSKKEKEARGSLKSAVERALSK--DTIVIL 76 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS---GGGHHHHHHHHHHHHHHHHTT---SEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhh-chhhhHHHHHHHHHHHHHhhcc--CeEEEE
Confidence 789999999988653 455667777788998887444442211110 223344444555555544 343 444443
No 407
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=27.80 E-value=1.1e+02 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.1
Q ss_pred CcEEEEEeChHHHHHHHHHH
Q 038482 80 EKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.--++.|.|+||.++..+|.
T Consensus 66 ~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 66 RVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CCceEEeeCHHHHHHHHHHc
Confidence 44588899999999988886
No 408
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.76 E-value=1.2e+02 Score=24.60 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=25.8
Q ss_pred CceEEEecC-CCC-----cchhhHHHHHHHHhcCCeEEee
Q 038482 9 GPEILFLYG-FPE-----LRYSRCHQTIALASLSYRAVAP 42 (234)
Q Consensus 9 ~~~lv~ihG-~~~-----~~~~~~~~~~~l~~~g~~v~~~ 42 (234)
+|.|++.|| ..+ +.+.|..+++.|.++|+.|+.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~ 214 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLF 214 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 478899999 443 3346788899999988788876
No 409
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=3.4e+02 Score=22.22 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=50.9
Q ss_pred CceEEEecCCCC----c-chhhHHHHHHHHh-cCCeEEeecCCCCCCCCccc----------c----cccccHHHHHHHH
Q 038482 9 GPEILFLYGFPE----L-RYSRCHQTIALAS-LSYRAVAPDLRGFGDTDELL----------E----MTSYTCFHVIGDL 68 (234)
Q Consensus 9 ~~~lv~ihG~~~----~-~~~~~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~----------~----~~~~~~~~~a~dl 68 (234)
+..|+|+-|... . ..+.-.+.+.|.+ .+-+++++-.+|-|.-.-.. . .-...+...++-.
T Consensus 31 k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~A 110 (423)
T COG3673 31 KRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIREA 110 (423)
T ss_pred ceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 347788888632 1 1334445556665 47888888888887541111 0 0011222222222
Q ss_pred HH-HHHhcCCCCCcEEEEEeChHHHHHHHHHH
Q 038482 69 IG-LIDLVAPNDEKVFVVGHDSGTYMACFLCS 99 (234)
Q Consensus 69 ~~-~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~ 99 (234)
.. +++.... +.++.++|+|-|+.+|--+|.
T Consensus 111 YrFL~~~yep-GD~Iy~FGFSRGAf~aRVlag 141 (423)
T COG3673 111 YRFLIFNYEP-GDEIYAFGFSRGAFSARVLAG 141 (423)
T ss_pred HHHHHHhcCC-CCeEEEeeccchhHHHHHHHH
Confidence 22 2233322 279999999999999877764
No 410
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.42 E-value=3.5e+02 Score=22.21 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=45.6
Q ss_pred eEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChH
Q 038482 11 EILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSG 90 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~G 90 (234)
-.++|+|+-.+...-..+++.+...+..|=.+.+--.|.+.-. ..+ .+..+.+.++++..|+ -+.+..|+|
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~----~ps-~e~i~~f~~~L~~~Gi----~vtvR~~~G 329 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQ----RPS-PKRIQAFQRVLEQRGV----AVSVRASRG 329 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCC----CCC-HHHHHHHHHHHHHCCC----eEEEeCCCC
Confidence 3479999999988888888777664333433333222322111 112 3445556667777777 356789999
Q ss_pred HHHH
Q 038482 91 TYMA 94 (234)
Q Consensus 91 g~ia 94 (234)
--|.
T Consensus 330 ~di~ 333 (345)
T PRK14457 330 LDAN 333 (345)
T ss_pred Cchh
Confidence 7664
No 411
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.22 E-value=70 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHhcCCeEEeecCC
Q 038482 23 YSRCHQTIALASLSYRAVAPDLR 45 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~ 45 (234)
..|..+++.|++.|+.+++.|.-
T Consensus 23 G~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 23 GFFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred chHHHHHHHHHHcCCcEEEEecc
Confidence 35677899999999999999953
No 412
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=27.13 E-value=1.2e+02 Score=25.07 Aligned_cols=64 Identities=17% Similarity=-0.005 Sum_probs=50.8
Q ss_pred ecCCCCCCCCccc------------ccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcccccccee
Q 038482 42 PDLRGFGDTDELL------------EMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALV 109 (234)
Q Consensus 42 ~D~~G~G~S~~~~------------~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lv 109 (234)
+.+||++..+... ....|+..++++.+..+++.-++ .+. -|.|-=|--|..+....|.|++++-
T Consensus 288 i~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v--~~l--~gLs~eg~kArd~l~~l~~rirr~~ 363 (390)
T PLN00179 288 ITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKV--EEL--TGLSGEGRRAQDYVCGLPPRIRRLE 363 (390)
T ss_pred CCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCc--Ccc--cCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 6788888776332 12468999999778888888888 665 5999999999999999999888764
No 413
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=27.01 E-value=83 Score=23.64 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHhcCCeEEeecC
Q 038482 29 TIALASLSYRAVAPDL 44 (234)
Q Consensus 29 ~~~l~~~g~~v~~~D~ 44 (234)
+..|+++|+.|+++|.
T Consensus 49 a~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 49 LAWLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHHhCCCeEEEEeC
Confidence 5567788999999995
No 414
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.98 E-value=57 Score=22.02 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=22.4
Q ss_pred EEEecCCCCcchhhHHHHHHHHhcCCeEEee
Q 038482 12 ILFLYGFPELRYSRCHQTIALASLSYRAVAP 42 (234)
Q Consensus 12 lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~ 42 (234)
++...|..|+-.-+-.++++|.++|++|...
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~rGh~V~~~ 32 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRRGHEVRLA 32 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEcCChhHHHHHHHHHHHHhccCCeEEEe
Confidence 4555666666666788899999999998754
No 415
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.94 E-value=2.3e+02 Score=22.86 Aligned_cols=31 Identities=6% Similarity=-0.177 Sum_probs=24.1
Q ss_pred CCcchhhHHHHHHHHhcCCeEEe-ecCCCCCC
Q 038482 19 PELRYSRCHQTIALASLSYRAVA-PDLRGFGD 49 (234)
Q Consensus 19 ~~~~~~~~~~~~~l~~~g~~v~~-~D~~G~G~ 49 (234)
.-+...+..++++-++.|.+||- +|.|||-.
T Consensus 78 ~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~ 109 (326)
T cd06564 78 YYTKEEFKELIAYAKDRGVNIIPEIDSPGHSL 109 (326)
T ss_pred cccHHHHHHHHHHHHHcCCeEeccCCCcHHHH
Confidence 34667788888888888888875 79999843
No 416
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=26.90 E-value=2.3e+02 Score=20.04 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=31.8
Q ss_pred HHHHHhcCCeEEeec-CCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 29 TIALASLSYRAVAPD-LRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 29 ~~~l~~~g~~v~~~D-~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
++.|.+.||.++++. +.|-|.. . ...+++.+-+-+..+++.+++
T Consensus 38 L~~l~~~Gy~IvIvTNQ~gi~~~---~--~~~~~~~~~~ki~~il~~l~i 82 (159)
T PF08645_consen 38 LRELHKKGYKIVIVTNQSGIGRG---M--GEKDLENFHEKIENILKELGI 82 (159)
T ss_dssp HHHHHHTTEEEEEEEE-CCCCCT---B--TCCHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHhcCCeEEEEeCccccccc---c--ccchHHHHHHHHHHHHHHcCC
Confidence 455667799988885 7666654 1 345778888888999999988
No 417
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.64 E-value=1.3e+02 Score=21.56 Aligned_cols=30 Identities=0% Similarity=-0.161 Sum_probs=24.8
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
..++++ ++-.+|.+++..|.+.|.+|+.+-
T Consensus 107 D~~vLv----SgD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 107 DAVALV----TRDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CEEEEE----eccHhHHHHHHHHHHCCCEEEEEe
Confidence 466666 566799999999999999999873
No 418
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=26.58 E-value=1.5e+02 Score=21.04 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.8
Q ss_pred EEeecCC
Q 038482 39 AVAPDLR 45 (234)
Q Consensus 39 v~~~D~~ 45 (234)
++++|-+
T Consensus 68 ~i~LDe~ 74 (153)
T TIGR00246 68 VVTLDIP 74 (153)
T ss_pred EEEEcCC
Confidence 3344433
No 419
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.55 E-value=4.1e+02 Score=22.69 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=27.3
Q ss_pred CceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeecC
Q 038482 9 GPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D~ 44 (234)
.|.++++=|..|++..- ..++..|.+.|++|..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 57788888998877543 5667778887899998875
No 420
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=26.52 E-value=1.1e+02 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccceeeeccC
Q 038482 66 GDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKALVNLSVV 114 (234)
Q Consensus 66 ~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 114 (234)
+.+.+.+..... ++++++| ||.+++++|....+.-..+.++...
T Consensus 137 ~~l~~~l~~~~~--~~vvViG---gG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 137 DAIDQFIKANQV--DKALVVG---AGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred HHHHHHHhhcCC--CEEEEEC---CCHHHHHHHHHHHhCCCcEEEEecc
Confidence 334444444445 7999999 7889999887655444567777643
No 421
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=26.36 E-value=3e+02 Score=21.15 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=45.2
Q ss_pred ecCCCCcchhhHHHHHHHHhcCCeEEee-cCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 15 LYGFPELRYSRCHQTIALASLSYRAVAP-DLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 15 ihG~~~~~~~~~~~~~~l~~~g~~v~~~-D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
=.|++.+.......++.|.+.|..-+.+ |. .+|.. . ..-.+.+++++-+.++.+...- ..+++++=
T Consensus 77 d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-~~~~~--~--~~l~~~ee~~~kI~Aa~~a~~~--~~~~I~AR 143 (238)
T PF13714_consen 77 DTGYGNDPENVARTVRELERAGAAGINIEDQ-RCGHG--G--KQLVSPEEMVAKIRAAVDARRD--PDFVIIAR 143 (238)
T ss_dssp TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-STTTS--T--T-B--HHHHHHHHHHHHHHHSS--TTSEEEEE
T ss_pred ccccCchhHHHHHHHHHHHHcCCcEEEeecc-ccCCC--C--CceeCHHHHHHHHHHHHHhccC--CeEEEEEe
Confidence 3577776888888899999888665555 56 34421 1 1456999999999999998876 55777754
No 422
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=26.33 E-value=3e+02 Score=21.04 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcE-EEEE
Q 038482 24 SRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKV-FVVG 86 (234)
Q Consensus 24 ~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~-~l~G 86 (234)
....+++.+.++|..=+.+-.-.-|+... +.|...+.+.+.+.++..+. .++ .+.|
T Consensus 47 Hl~al~~~a~~~gv~~V~vH~f~DGRDt~-----P~S~~~yl~~l~~~l~~~~~--g~IAsv~G 103 (223)
T PF06415_consen 47 HLFALIKLAKKQGVKKVYVHAFTDGRDTP-----PKSALKYLEELEEKLAEIGI--GRIASVSG 103 (223)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEEE-SSSS------TTTHHHHHHHHHHHHHHHTC--TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCCCCC-----cchHHHHHHHHHHHHHhhCC--ceEEEEec
Confidence 34555666666664322222222233333 33667777777777777766 544 4444
No 423
>PRK06193 hypothetical protein; Provisional
Probab=26.26 E-value=1.3e+02 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 59 YTCFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 59 ~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
.+.+.+.+++..+++.+.-..+++.+|||..
T Consensus 135 ~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 135 ERNALLKAGLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEeCch
Confidence 4556667888888888753337899999995
No 424
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=26.24 E-value=3.1e+02 Score=21.64 Aligned_cols=70 Identities=10% Similarity=-0.062 Sum_probs=43.1
Q ss_pred ecCCCCcchhhHHHHHHHHhc-CCeEEeecCCCCCCCCccccccccc--HHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 15 LYGFPELRYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYT--CFHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 15 ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~--~~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
+|=.+.+. .....++.|.+. |..++.+.+|-+-....+...++|. ++..++....+-..... +-+.++|.
T Consensus 12 ~H~np~~g-g~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~--~~~~vvGv 84 (285)
T COG1831 12 FHLNPKNG-GALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPV--EAYAVVGV 84 (285)
T ss_pred eeecCCcC-cHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCc--eeEEEecc
Confidence 34444454 567778888876 6888888988776655555333443 45555555555444555 55677773
No 425
>COG1485 Predicted ATPase [General function prediction only]
Probab=26.11 E-value=1.2e+02 Score=24.88 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=14.8
Q ss_pred ccHHHHHHH--HHHHHHhcCCCCCcEEEEEeC
Q 038482 59 YTCFHVIGD--LIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 59 ~~~~~~a~d--l~~~~~~~~~~~~~~~l~GhS 88 (234)
..+.|.++. +..++++|=. +.|+||..|
T Consensus 139 F~VtDI~DAMiL~rL~~~Lf~--~GV~lvaTS 168 (367)
T COG1485 139 FEVTDIADAMILGRLLEALFA--RGVVLVATS 168 (367)
T ss_pred eeecChHHHHHHHHHHHHHHH--CCcEEEEeC
Confidence 344444443 3355555544 566777766
No 426
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=26.09 E-value=1.1e+02 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeChHHHHH
Q 038482 63 HVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMA 94 (234)
Q Consensus 63 ~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia 94 (234)
+....++-.+..++. +.++++||+-=|++.
T Consensus 41 ~~~~sl~~av~~l~~--~~IiV~gHt~Cg~~~ 70 (142)
T cd03379 41 DAIRSLVVSVYLLGT--REIIVIHHTDCGMLT 70 (142)
T ss_pred hHHHHHHHHHHHhCC--CEEEEEeecCCcceE
Confidence 355667777788999 999999998666554
No 427
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=26.09 E-value=1.6e+02 Score=24.72 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=37.2
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCC
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDT 50 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S 50 (234)
+++++|-+--+|-+.-.-....+.|.+.||.|+++-..|.|..
T Consensus 183 ~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~ 225 (403)
T PF06792_consen 183 EDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGR 225 (403)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 4567888888888888889999999999999999999999854
No 428
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=26.09 E-value=2e+02 Score=23.37 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=46.4
Q ss_pred EEecCCCCcchhhHHHHHHHHhcC--CeEEeecCCCCCCCCccc--------------ccccccHHHHHHHHHHHHHhcC
Q 038482 13 LFLYGFPELRYSRCHQTIALASLS--YRAVAPDLRGFGDTDELL--------------EMTSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 13 v~ihG~~~~~~~~~~~~~~l~~~g--~~v~~~D~~G~G~S~~~~--------------~~~~~~~~~~a~dl~~~~~~~~ 76 (234)
||++|+|+=...-..+++.+.... ..|++++ ||-.+-... .....+..+.++.+...++...
T Consensus 57 lL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvn--Gy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~ 134 (326)
T PF04084_consen 57 LLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVN--GYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRP 134 (326)
T ss_pred EEEEecChHHHHHHHHHHHHhhccCCCcEEEEE--ccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccC
Confidence 577888777777777777766542 5677775 332211100 0012355566666666666554
Q ss_pred -CCCCcEEEEEeChHHHH
Q 038482 77 -PNDEKVFVVGHDSGTYM 93 (234)
Q Consensus 77 -~~~~~~~l~GhS~Gg~i 93 (234)
. .+++|+=|++=|..
T Consensus 135 ~~--~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 135 SP--PPLYLVIHNIDGPS 150 (326)
T ss_pred CC--CceEEEEECCCChh
Confidence 4 68999999987755
No 429
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.07 E-value=1.4e+02 Score=23.71 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHh-cCCeEEeecCCCCCC--CCcccccccccHHHHHHHHHHHHHhcCCCCCcEEE-EEeChHH
Q 038482 23 YSRCHQTIALAS-LSYRAVAPDLRGFGD--TDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFV-VGHDSGT 91 (234)
Q Consensus 23 ~~~~~~~~~l~~-~g~~v~~~D~~G~G~--S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l-~GhS~Gg 91 (234)
..|++....+.+ .||..+... |+|- |-..++....++++++.++..+.+...+ |+.+ +=..+|.
T Consensus 24 g~~d~~sA~la~~aGF~al~~s--g~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~l---Pv~vD~dtGfG~ 91 (289)
T COG2513 24 GAWDAGSALLAERAGFKALYLS--GAGVAASLGLPDLGITTLDEVLADARRITDAVDL---PVLVDIDTGFGE 91 (289)
T ss_pred CCcCHHHHHHHHHcCCeEEEec--cHHHHHhcCCCccccccHHHHHHHHHHHHhhcCC---ceEEeccCCCCc
Confidence 367777766665 499988875 4443 3333344556899999999999998887 4433 3344555
No 430
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.90 E-value=1.4e+02 Score=23.86 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=23.5
Q ss_pred CceEEEecCCCCcch-----hhHHHHHHHHhcCCeEEee
Q 038482 9 GPEILFLYGFPELRY-----SRCHQTIALASLSYRAVAP 42 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~-----~~~~~~~~l~~~g~~v~~~ 42 (234)
++-++++||...... .|..+++.|.+.|++++..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~ 216 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLP 216 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 456677888754333 4677888887778887753
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.85 E-value=1.4e+02 Score=18.13 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=19.2
Q ss_pred EecCCCCcch-hh-HHHHHHHHhcCCeEEeec
Q 038482 14 FLYGFPELRY-SR-CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 14 ~ihG~~~~~~-~~-~~~~~~l~~~g~~v~~~D 43 (234)
++-|.++++. .. ..++..|++.|++++.+|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3334444433 33 556777887789999988
No 432
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=25.82 E-value=1.3e+02 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.5
Q ss_pred CcEEEEEeChHHHHH
Q 038482 80 EKVFVVGHDSGTYMA 94 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia 94 (234)
+.--++|.++|++++
T Consensus 76 ~g~p~LGIClGAy~a 90 (114)
T cd03144 76 NGGNYLGICAGAYLA 90 (114)
T ss_pred CCCcEEEEecCccce
Confidence 345689999999998
No 433
>PRK10115 protease 2; Provisional
Probab=25.56 E-value=2.8e+02 Score=25.19 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=41.1
Q ss_pred CCceEEEecCCCCcchhh---HHHHHHHHhcCC--eEEee---cCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 8 QGPEILFLYGFPELRYSR---CHQTIALASLSY--RAVAP---DLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~---~~~~~~l~~~g~--~v~~~---D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
.-|+++++||.--..-.+ ..++..|.++|. +.+.+ .--|||..+. ....+++.|..+.-+++.++.
T Consensus 605 ~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~----r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 605 AYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSG----RFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred CCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcC----HHHHHHHHHHHHHHHHHHhCC
Confidence 457789999997654333 345667766553 33443 3478884322 234677788888878777764
No 434
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=25.36 E-value=3.2e+02 Score=21.15 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=44.6
Q ss_pred eEEEecCCCCcchhh--HHHHHHHHhcC--CeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHh-cCCCCCcEEEE
Q 038482 11 EILFLYGFPELRYSR--CHQTIALASLS--YRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDL-VAPNDEKVFVV 85 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~--~~~~~~l~~~g--~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~-~~~~~~~~~l~ 85 (234)
|+|++-|++.|+..- ..+.+.|.+.| +.|+.+|--..|.-....-.+...-...-.++...++. +.- ..++++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk--~~iVI~ 79 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSK--GDIVIV 79 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhccc--CcEEEE
Confidence 689999999988765 35577787765 47888875555544322211233445566667766654 444 555554
No 435
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=25.31 E-value=2.5e+02 Score=21.31 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=13.7
Q ss_pred hhHHHHHHHHh--cCCeEEeecCC
Q 038482 24 SRCHQTIALAS--LSYRAVAPDLR 45 (234)
Q Consensus 24 ~~~~~~~~l~~--~g~~v~~~D~~ 45 (234)
.|..++..+.. ++|+++++|--
T Consensus 67 ~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 67 AMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred HHHHHHHHHHhccccCCEEEEecH
Confidence 45455554443 36999999854
No 436
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=25.11 E-value=2.6e+02 Score=23.17 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHH-H-hcCCCCCcEEEEEeC-hH
Q 038482 22 RYSRCHQTIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLI-D-LVAPNDEKVFVVGHD-SG 90 (234)
Q Consensus 22 ~~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~-~-~~~~~~~~~~l~GhS-~G 90 (234)
+.++..+++.+.+. |.+|+.++.+|+..+.. .-++.....+.+.+ + .-...+..+.++|.+ ++
T Consensus 90 GdD~~~v~~~~~~~~~~~vi~v~~~gf~~~~~------~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~ 156 (398)
T PF00148_consen 90 GDDIEAVARELQEEYGIPVIPVHTPGFSGSYS------QGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLG 156 (398)
T ss_dssp TTTHHHHHHHHHHHHSSEEEEEE--TTSSSHH------HHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBT
T ss_pred CCCHHHHHHHhhcccCCcEEEEECCCccCCcc------chHHHHHHHHHhhcccccccCCCCceEEecCcCCC
Confidence 35788889999865 56999999999933311 12333333333333 2 222213689999998 55
No 437
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=25.00 E-value=2.1e+02 Score=20.64 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=38.9
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEe-
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGH- 87 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~Gh- 87 (234)
.|-.|++-.+--....|..+.+.|... -.....++- ...+...+.+.+.++-+ +. ..+.||||
T Consensus 47 ~~D~VL~Spa~Ra~QTae~v~~~~~~~-~~~~~~~l~-----------p~~d~~~~l~~l~~~~d--~v--~~vllVgH~ 110 (163)
T COG2062 47 EPDLVLVSPAVRARQTAEIVAEHLGEK-KVEVFEELL-----------PNGDPGTVLDYLEALGD--GV--GSVLLVGHN 110 (163)
T ss_pred CCCEEEeChhHHHHHHHHHHHHhhCcc-cceeccccC-----------CCCCHHHHHHHHHHhcc--cC--ceEEEECCC
Confidence 356677766666666666666666532 122222211 12244455555555544 46 78999999
Q ss_pred -ChHHHHHHH
Q 038482 88 -DSGTYMACF 96 (234)
Q Consensus 88 -S~Gg~ia~~ 96 (234)
+||-.+...
T Consensus 111 P~l~~l~~~L 120 (163)
T COG2062 111 PLLEELALLL 120 (163)
T ss_pred ccHHHHHHHH
Confidence 455444433
No 438
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=24.98 E-value=2e+02 Score=22.19 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeChHHH-H-HHHHHHhccccccceeeecc
Q 038482 63 HVIGDLIGLIDLVAPNDEKVFVVGHDSGTY-M-ACFLCSFRANRIKALVNLSV 113 (234)
Q Consensus 63 ~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~-i-a~~~a~~~p~~v~~lvl~~~ 113 (234)
...+++.+.++..|+ ++.+++.-|.-+. - -+.-+.+.++++.+++.+++
T Consensus 28 ~~~e~l~~~m~~~gV--~~aV~vq~~~~~~~n~~~~~~~~~~~r~~g~~~~~p 78 (263)
T cd01311 28 PGIDDLRALRSTLGI--DRVVIVQASIYGADNSNLLDALASNGKARGGATVDP 78 (263)
T ss_pred CCHHHHHHHHHHhCC--CcEEEeCccccCCchHHHHHHHhhCCCeEEEEEECC
Confidence 346777777888999 8998887654232 1 11222235588888888764
No 439
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.92 E-value=1.2e+02 Score=21.74 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCCeEEee
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSYRAVAP 42 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~ 42 (234)
..+.++++=|-+.++.+=-..++.|.++|++|.++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 46788888898888877777889998889998883
No 440
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=24.86 E-value=89 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=22.7
Q ss_pred EeecCCCCCCCCccccc-ccccHH----HHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 40 VAPDLRGFGDTDELLEM-TSYTCF----HVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 40 ~~~D~~G~G~S~~~~~~-~~~~~~----~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
|++| ||||..++-... ....-. +++..+.+.++..+. ++.+.--
T Consensus 1 I~id-pGHgg~d~Ga~~~~g~~E~~~~l~ia~~l~~~L~~~g~---~V~~tr~ 49 (175)
T PF01520_consen 1 IVID-PGHGGNDPGAVGPNGIREKDINLDIALRLKKELEKHGI---KVYLTRD 49 (175)
T ss_dssp EEEE-EEEBTTBTSSBCTTSCBHHHHHHHHHHHHHHHHHHTTE---EEEESSS
T ss_pred CEEE-CCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhcCCc---EEEEeCC
Confidence 4556 688877654311 222333 445555666666665 4444433
No 441
>PF15566 Imm18: Immunity protein 18
Probab=24.85 E-value=99 Score=17.43 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeChHHH
Q 038482 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTY 92 (234)
Q Consensus 61 ~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ 92 (234)
+..+++++..+...... +.++++--||||.
T Consensus 4 L~~L~~~l~~L~~~~~~--~H~Hlmtp~WgG~ 33 (52)
T PF15566_consen 4 LELLQDQLENLQEKEPF--DHEHLMTPDWGGE 33 (52)
T ss_pred HHHHHHHHHHHHhccCC--CCceecccccccc
Confidence 45567777777766655 7899999999995
No 442
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.79 E-value=4.4e+02 Score=22.44 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=14.3
Q ss_pred HHHHhcCCeEEeecCCCCCC
Q 038482 30 IALASLSYRAVAPDLRGFGD 49 (234)
Q Consensus 30 ~~l~~~g~~v~~~D~~G~G~ 49 (234)
+.+...+|+++.+|-+|...
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHHhcCCCEEEEeCCCccc
Confidence 34444579999999998643
No 443
>PRK06696 uridine kinase; Validated
Probab=24.66 E-value=2e+02 Score=21.54 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=26.8
Q ss_pred CCCceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeec
Q 038482 7 GQGPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D 43 (234)
+++|.||.|-|.++++... ..+++.|.+.|..++.+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4568999999998887654 455667766677777744
No 444
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=24.37 E-value=1.3e+02 Score=22.91 Aligned_cols=80 Identities=16% Similarity=0.015 Sum_probs=47.2
Q ss_pred HHHHHhc-CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccc
Q 038482 29 TIALASL-SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKA 107 (234)
Q Consensus 29 ~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~ 107 (234)
++.+++. +..++.-..+ |.|.........+-.|-++|+-+++....- +-.-+=|.|.|+.+.-.=-.|-.+-+++
T Consensus 56 i~lyaecm~lPlyrr~i~--g~s~nq~l~Y~~t~~DEvEDLy~ll~~VK~--~~p~~eaVS~GAIlS~YQr~RVEnVC~R 131 (277)
T KOG2316|consen 56 IDLYAECMGLPLYRRRIR--GRSINQKLQYTKTEGDEVEDLYELLKTVKE--KIPDVEAVSVGAILSDYQRTRVENVCSR 131 (277)
T ss_pred HHHHHHHhcCceeeeecc--CcccccccccccCCCchHHHHHHHHHHHHh--hCCCceeeehhhhHhHHHHHHHHHHHhh
Confidence 5556664 3444444444 555554422445667889999999887764 3347889999987764333333333444
Q ss_pred eeeec
Q 038482 108 LVNLS 112 (234)
Q Consensus 108 lvl~~ 112 (234)
+-+++
T Consensus 132 L~L~~ 136 (277)
T KOG2316|consen 132 LGLVS 136 (277)
T ss_pred hCcee
Confidence 44433
No 445
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.27 E-value=1.4e+02 Score=22.94 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=16.1
Q ss_pred EEEEeChHHHHHHHHHHh
Q 038482 83 FVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~ 100 (234)
.+.|.|.||.+|..++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 577999999999999876
No 446
>PRK07206 hypothetical protein; Provisional
Probab=24.27 E-value=3.6e+02 Score=22.44 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=23.0
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCC
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLR 45 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~ 45 (234)
+.|+++-|.... ..+++++.+.||+++++|-.
T Consensus 3 k~~liv~~~~~~----~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSSG----KFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCchH----HHHHHHHHHcCCeEEEEEcC
Confidence 367888775332 35778888889999998744
No 447
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.08 E-value=2.2e+02 Score=21.58 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcC-CCCCcEEEEEeChHH-HHHHHHHHhcccccccee
Q 038482 63 HVIGDLIGLIDLVA-PNDEKVFVVGHDSGT-YMACFLCSFRANRIKALV 109 (234)
Q Consensus 63 ~~a~dl~~~~~~~~-~~~~~~~l~GhS~Gg-~ia~~~a~~~p~~v~~lv 109 (234)
+-.+.|...+..+. . ++++++|-+.|| .++++.|....-...-++
T Consensus 9 dAGr~La~~l~~~~~~--~~~iVlaLpRGGvpva~evA~~lga~ldvli 55 (220)
T COG1926 9 DAGRKLAQELAALRDL--KDVIVLALPRGGVPVAFEVAQALGAPLDVLI 55 (220)
T ss_pred HHHHHHHHHHHhhccC--CCcEEEEecCCCchHHHHHHHHhCCCeeEEE
Confidence 34445555555554 5 789999999999 778888876544343333
No 448
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.05 E-value=3.5e+02 Score=21.05 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCC--eEEeecCCCCCCCC
Q 038482 26 CHQTIALASLSY--RAVAPDLRGFGDTD 51 (234)
Q Consensus 26 ~~~~~~l~~~g~--~v~~~D~~G~G~S~ 51 (234)
...++.+.+.|. .=+.+|. |.|...
T Consensus 151 ~~~i~~~~~~Gi~~~~iilDP-g~gf~k 177 (257)
T TIGR01496 151 EARAEELVAAGVAAERIILDP-GIGFGK 177 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEEC-CCCccc
Confidence 344555666676 4567885 777653
No 449
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.91 E-value=57 Score=26.06 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.8
Q ss_pred EEEEeChHHHHHHHHHH
Q 038482 83 FVVGHDSGTYMACFLCS 99 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~ 99 (234)
.+.|.|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 67799999999998874
No 450
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=23.84 E-value=50 Score=21.40 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=35.3
Q ss_pred HHHHHHh-cCCeEEeecCCCCCCCCccc------ccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 28 QTIALAS-LSYRAVAPDLRGFGDTDELL------EMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 28 ~~~~l~~-~g~~v~~~D~~G~G~S~~~~------~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
+++.|.+ ++-++.++|+++. +.-.. ......+...++.+...++..+. .+...=|..
T Consensus 5 i~~~l~~kka~dI~vldv~~~--~~~~dy~VI~Tg~S~rh~~aia~~v~~~~k~~~~--~~~~~EG~~ 68 (99)
T TIGR00090 5 IVEALDDKKAEDIVVLDVRGK--SSIADYFVIASGTSSRHVKAIADNVEEELKEAGL--KPLGVEGLE 68 (99)
T ss_pred HHHHHHHcCCCCEEEEECCCC--CcccCEEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CcccccCCC
Confidence 4555654 3789999999863 22211 11233567788888888887777 555555543
No 451
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=23.75 E-value=1.2e+02 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHH
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFL 97 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~ 97 (234)
...-++-.+..++. +.++|+|||-=|++...+
T Consensus 67 ~~asleyAv~~L~v--~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 67 CLSVLQYAVDVLKV--KHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred hhhhHHHHHHhcCC--CEEEEecCCCchHHHHHH
Confidence 45667777788999 999999999988777555
No 452
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.64 E-value=2e+02 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCC--CCcEEEEEeC--hHHHHHHHHHHh
Q 038482 65 IGDLIGLIDLVAPN--DEKVFVVGHD--SGTYMACFLCSF 100 (234)
Q Consensus 65 a~dl~~~~~~~~~~--~~~~~l~GhS--~Gg~ia~~~a~~ 100 (234)
+..+.++++..++. +++++++|.| .|--++.++..+
T Consensus 141 p~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~ 180 (285)
T PRK14191 141 PMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNA 180 (285)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence 45667777776543 6899999999 455666666543
No 453
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=23.60 E-value=2.6e+02 Score=20.61 Aligned_cols=67 Identities=7% Similarity=0.012 Sum_probs=33.1
Q ss_pred CCceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeecCCCCCCCCcccccc--cccHHHHHHHHHHHHHhcCCCCCcE
Q 038482 8 QGPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPDLRGFGDTDELLEMT--SYTCFHVIGDLIGLIDLVAPNDEKV 82 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~--~~~~~~~a~dl~~~~~~~~~~~~~~ 82 (234)
++.|+|+++-+-. .+| ...+..|.+. ..++.++ +|+.+....+. ...++-+.+-+.+.++..++ +++
T Consensus 115 e~rPlvlaPamN~--~m~~~~~Ni~~L~~~-~g~~~v~---f~qd~~~~k~~s~~~~~~~~~~~~~~a~~~~q~--qp~ 185 (187)
T TIGR02852 115 NNKPVVLAISTND--ALGLNAVNLMRLLNT-KNIYFVP---FGQDDPFKKPNSLVAKMDYLIPTIEEALQGRQL--QPI 185 (187)
T ss_pred CCCCEEEEECcCH--HHHhCHHHHHHHHHc-CCEEEEe---ecCCCCCCCchhHHhhHHhhHHHHHHHHhCCCc--Ccc
Confidence 4567777766533 233 3556666432 3455553 44444333111 12444455556666665555 554
No 454
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=23.51 E-value=1e+02 Score=27.88 Aligned_cols=78 Identities=12% Similarity=-0.037 Sum_probs=46.2
Q ss_pred CCceEEEecCCCC----------cchhhHHHHHHHHhcCCeEEeecCC-C--CCCCCcccccccccH----HHHHHHHHH
Q 038482 8 QGPEILFLYGFPE----------LRYSRCHQTIALASLSYRAVAPDLR-G--FGDTDELLEMTSYTC----FHVIGDLIG 70 (234)
Q Consensus 8 ~~~~lv~ihG~~~----------~~~~~~~~~~~l~~~g~~v~~~D~~-G--~G~S~~~~~~~~~~~----~~~a~dl~~ 70 (234)
++-+|++-|.... +...|..+++.|.++||+++.+|-- . .|....+...-..|+ .+....+.-
T Consensus 47 ~~~~VL~YH~V~d~~~~~~~~~Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~P 126 (671)
T PRK14582 47 NGFVAIAYHDVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFP 126 (671)
T ss_pred CceEEEEeCcccCCcccccccccCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHH
Confidence 4568999999853 2346888999999999999998721 1 122111111011122 223456777
Q ss_pred HHHhcCCCCCcEEEEE
Q 038482 71 LIDLVAPNDEKVFVVG 86 (234)
Q Consensus 71 ~~~~~~~~~~~~~l~G 86 (234)
++++.+.. ..+.++|
T Consensus 127 ILkkygvp-ATfFlvg 141 (671)
T PRK14582 127 ILQAFQWP-AVWAPVG 141 (671)
T ss_pred HHHHcCCC-EEEEEec
Confidence 88888882 3344555
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=4.6e+02 Score=22.23 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=31.4
Q ss_pred HHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhcc
Q 038482 29 TIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRA 102 (234)
Q Consensus 29 ~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p 102 (234)
++.+.+.+|.+|..|--|.-. .-..+-+.+.++-+.+.. ..+++|=-+.=|.-+..-|..+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~----------qe~sLfeEM~~v~~ai~P--d~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHK----------QEASLFEEMKQVSKAIKP--DEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchh----------hhHHHHHHHHHHHhhcCC--CeEEEEEeccccHhHHHHHHHHH
Confidence 455777789999999765321 112233444444455555 45544433333333434443333
No 456
>PLN02748 tRNA dimethylallyltransferase
Probab=23.16 E-value=4.8e+02 Score=22.53 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=46.1
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeec----CCCCCC-CCccc----------------ccccccHHHHHH
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASL-SYRAVAPD----LRGFGD-TDELL----------------EMTSYTCFHVIG 66 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D----~~G~G~-S~~~~----------------~~~~~~~~~~a~ 66 (234)
.+.+|+|-|-.+++.. .++..|++. +..|+..| ++|.-- +.++. ..+.|+..++.+
T Consensus 21 ~~~~i~i~GptgsGKs--~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~ 98 (468)
T PLN02748 21 KAKVVVVMGPTGSGKS--KLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRD 98 (468)
T ss_pred CCCEEEEECCCCCCHH--HHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHH
Confidence 3567888777666543 344455554 45677777 333221 22211 115689999999
Q ss_pred HHHHHHHhcCCCCCcEEEEEeC
Q 038482 67 DLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 67 dl~~~~~~~~~~~~~~~l~GhS 88 (234)
+...+++.+..+++-.+|||-|
T Consensus 99 ~A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 99 HAVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHhcCCCeEEEcCh
Confidence 9999998764333456777644
No 457
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.14 E-value=1.9e+02 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCC--CCcEEEEEeCh--HHHHHHHHHHh
Q 038482 65 IGDLIGLIDLVAPN--DEKVFVVGHDS--GTYMACFLCSF 100 (234)
Q Consensus 65 a~dl~~~~~~~~~~--~~~~~l~GhS~--Gg~ia~~~a~~ 100 (234)
+..+.++++..++. +++++++|.|. |--++.++..+
T Consensus 143 p~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~ 182 (285)
T PRK10792 143 PRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLA 182 (285)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC
Confidence 45566777776543 68999999997 77777777643
No 458
>PLN03019 carbonic anhydrase
Probab=23.03 E-value=1.3e+02 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHH
Q 038482 63 HVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFL 97 (234)
Q Consensus 63 ~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~ 97 (234)
.....|+-.+..++. +.++|+|||-=|.|...+
T Consensus 200 ~v~aSIEYAV~~L~V--~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 200 GVGAAIEYAVLHLKV--ENIVVIGHSACGGIKGLM 232 (330)
T ss_pred ccchhHHHHHHHhCC--CEEEEecCCCchHHHHHH
Confidence 355677788889999 999999999877766544
No 459
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=22.66 E-value=1e+02 Score=25.98 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=19.0
Q ss_pred eEeecCCccccccccccC-CCCCceeEEeCCCCCcc
Q 038482 196 TITKGVKEYIHKGEFRSD-VPLLEEVTIMEGVGHFI 230 (234)
Q Consensus 196 lli~G~~D~~~~~~~~~~-~~~~~~~~~~~~agH~~ 230 (234)
+++.|+.|++..--..+. -... ...+|||++|+.
T Consensus 380 iFtNG~~DPW~~lgv~~~~~~~~-~~~~I~g~~Hc~ 414 (434)
T PF05577_consen 380 IFTNGELDPWRALGVTSDSSDSV-PAIVIPGGAHCS 414 (434)
T ss_dssp EEEEETT-CCGGGS--S-SSSSE-EEEEETT--TTG
T ss_pred EeeCCCCCCcccccCCCCCCCCc-ccEEECCCeeec
Confidence 559999999962222222 2333 667899999985
No 460
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.62 E-value=2e+02 Score=22.85 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCC--CCcEEEEEeCh--HHHHHHHHHHh
Q 038482 65 IGDLIGLIDLVAPN--DEKVFVVGHDS--GTYMACFLCSF 100 (234)
Q Consensus 65 a~dl~~~~~~~~~~--~~~~~l~GhS~--Gg~ia~~~a~~ 100 (234)
+.-+.++++..++. +++++++|.|. |--++.++..+
T Consensus 148 p~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~ 187 (287)
T PRK14176 148 PHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR 187 (287)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC
Confidence 45667777776543 68999999997 77777777654
No 461
>COG3034 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=58 Score=25.82 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=16.9
Q ss_pred eEEEecCCCCcchhhHHHHHHHH
Q 038482 11 EILFLYGFPELRYSRCHQTIALA 33 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~~~~~l~ 33 (234)
.-|+|||.+.+..+|......+.
T Consensus 139 ~~ImIHG~~~s~g~y~~~~a~i~ 161 (298)
T COG3034 139 GGIMIHGACLSDGCYSMTDAQID 161 (298)
T ss_pred CceEEecccCCCCcccchhhhHH
Confidence 56999999999888765544433
No 462
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=22.55 E-value=4e+02 Score=23.59 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=45.7
Q ss_pred eEEEecCCCCcchhhHH-HHHHHHhcCC-------eEEeecCCCCCCCCcccccccccHHHHH-----------HHHHHH
Q 038482 11 EILFLYGFPELRYSRCH-QTIALASLSY-------RAVAPDLRGFGDTDELLEMTSYTCFHVI-----------GDLIGL 71 (234)
Q Consensus 11 ~lv~ihG~~~~~~~~~~-~~~~l~~~g~-------~v~~~D~~G~G~S~~~~~~~~~~~~~~a-----------~dl~~~ 71 (234)
.-+++-|.|..+---.. +...+.+.|. ++|.+|-.|-=..++..... ..-..+| .++.++
T Consensus 298 ~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~-~~k~~fa~~~~~~~~~~~~~L~e~ 376 (559)
T PTZ00317 298 QRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLA-KHKVPFARTDISAEDSSLKTLEDV 376 (559)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcccc-HHHHHHhccccccccccCCCHHHH
Confidence 44566788776655443 4455555566 89999988844333321000 0011111 346666
Q ss_pred HHhcCCCCCcEEEEEeCh-HHHHHHHH
Q 038482 72 IDLVAPNDEKVFVVGHDS-GTYMACFL 97 (234)
Q Consensus 72 ~~~~~~~~~~~~l~GhS~-Gg~ia~~~ 97 (234)
++.. ++=+|+|-|- ||.+.-..
T Consensus 377 v~~~----KPtvLIG~S~~~g~Ft~ev 399 (559)
T PTZ00317 377 VRFV----KPTALLGLSGVGGVFTEEV 399 (559)
T ss_pred Hhcc----CCCEEEEecCCCCCCCHHH
Confidence 6543 5679999996 77554333
No 463
>PRK08506 replicative DNA helicase; Provisional
Probab=22.53 E-value=5e+02 Score=22.34 Aligned_cols=63 Identities=10% Similarity=-0.101 Sum_probs=36.0
Q ss_pred cchhhHHHHHHHHhc--CCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 21 LRYSRCHQTIALASL--SYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 21 ~~~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
+.......++.+... +..++++|+.+.-.++.........+.+.++.|..+.+.+++ +++++.
T Consensus 285 ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~i---pVi~ls 349 (472)
T PRK08506 285 NIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDI---PIIALS 349 (472)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC---cEEEEe
Confidence 334444455555542 478999998765443322111223455666777777777776 666554
No 464
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=22.50 E-value=3.6e+02 Score=20.62 Aligned_cols=81 Identities=14% Similarity=-0.068 Sum_probs=40.3
Q ss_pred CCcchhhHHHHHHHH---hcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhc-CCCCCcE--EEEEeChHHH
Q 038482 19 PELRYSRCHQTIALA---SLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLV-APNDEKV--FVVGHDSGTY 92 (234)
Q Consensus 19 ~~~~~~~~~~~~~l~---~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~-~~~~~~~--~l~GhS~Gg~ 92 (234)
.-+..++..+.+.+. +...+++++.=.|-..|...+-........+.+.+..+++.+ .. ++++ .+=|+.+||.
T Consensus 23 al~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~-~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 23 ALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAA-PVPVIAAINGPAIGAG 101 (243)
T ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhC-CCCEEEEecCcccccH
Confidence 345566666665554 235677777533322343333101111122333333334333 22 1343 3339999999
Q ss_pred HHHHHHHh
Q 038482 93 MACFLCSF 100 (234)
Q Consensus 93 ia~~~a~~ 100 (234)
+.+.++..
T Consensus 102 ~~lal~cD 109 (243)
T PRK07854 102 LQLAMACD 109 (243)
T ss_pred HHHHHhCC
Confidence 99988764
No 465
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=22.39 E-value=1.9e+02 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEe
Q 038482 62 FHVIGDLIGLIDLVAPNDEKVFVVGH 87 (234)
Q Consensus 62 ~~~a~dl~~~~~~~~~~~~~~~l~Gh 87 (234)
.++.+.|.+.++....++++++|+||
T Consensus 196 ~~Ql~WL~~~L~~a~~~~~~v~I~~H 221 (296)
T cd00842 196 AGQLQWLEDELQEAEQAGEKVWIIGH 221 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 56677777777655322268999998
No 466
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.33 E-value=2.3e+02 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=15.6
Q ss_pred EEecCCCCcchhhHHHHHHHHhcCCeEEee
Q 038482 13 LFLYGFPELRYSRCHQTIALASLSYRAVAP 42 (234)
Q Consensus 13 v~ihG~~~~~~~~~~~~~~l~~~g~~v~~~ 42 (234)
|++-|.+.+...=..+...|...|..+..+
T Consensus 36 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~ 65 (179)
T cd05005 36 IFVYGAGRSGLVAKAFAMRLMHLGLNVYVV 65 (179)
T ss_pred EEEEecChhHHHHHHHHHHHHhCCCeEEEe
Confidence 455566655443344444455445556655
No 467
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.18 E-value=4.5e+02 Score=21.69 Aligned_cols=64 Identities=14% Similarity=-0.061 Sum_probs=38.1
Q ss_pred ceEEEecCCCC--cchhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEEE
Q 038482 10 PEILFLYGFPE--LRYSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVVG 86 (234)
Q Consensus 10 ~~lv~ihG~~~--~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~G 86 (234)
..++++.|-.. ....++.+.+.|.+.|..+..+|- -... .+ .+.++.+.+.++..+. +-++-+|
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~----v~~~------p~-~~~v~~~~~~~~~~~~--D~IiavG 91 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDK----VEPN------PT-TTTVMEGAALAREEGC--DFVVGLG 91 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCC----ccCC------CC-HHHHHHHHHHHHHcCC--CEEEEeC
Confidence 45677776544 455678888889887887777751 1111 12 3455556666666666 5555454
No 468
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.15 E-value=4e+02 Score=20.99 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHh-cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEE-EEEeChHHHHHHHHHHhc-c
Q 038482 26 CHQTIALAS-LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVF-VVGHDSGTYMACFLCSFR-A 102 (234)
Q Consensus 26 ~~~~~~l~~-~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~-l~GhS~Gg~ia~~~a~~~-p 102 (234)
...++.+.+ .++.++.+|-+|....+ .+..+.+..+++.... ..++ ++.-++++.-+...+.++ +
T Consensus 143 ~~~l~~l~~~~~~D~ViIDt~Gr~~~~----------~~~l~el~~~~~~~~~--~~~~LVl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 143 TRALTYFKEEARVDYILIDTAGKNYRA----------SETVEEMIETMGQVEP--DYICLTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcCC----------HHHHHHHHHHHhhhCC--CeEEEEEcCccCHHHHHHHHHHhCC
Confidence 334445544 25899999999864321 2234444455554444 3444 456677887777777664 3
Q ss_pred ccccceee
Q 038482 103 NRIKALVN 110 (234)
Q Consensus 103 ~~v~~lvl 110 (234)
-.+.++|+
T Consensus 211 ~~~~~~I~ 218 (270)
T PRK06731 211 IHIDGIVF 218 (270)
T ss_pred CCCCEEEE
Confidence 35667666
No 469
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.11 E-value=4.5e+02 Score=21.58 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=61.1
Q ss_pred CCceEEEecCCCCcc--hhhHHHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHH-HHHHHHHHHhcCCCCCcEEE
Q 038482 8 QGPEILFLYGFPELR--YSRCHQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHV-IGDLIGLIDLVAPNDEKVFV 84 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~-a~dl~~~~~~~~~~~~~~~l 84 (234)
++|.++++=|.-|.+ ..-..++..|.++|++|+.. ...|++.- .+.+..+-+.++. -+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla--------------A~DTFRAaAiEQL~~w~er~gv-----~v 197 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA--------------AGDTFRAAAIEQLEVWGERLGV-----PV 197 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE--------------ecchHHHHHHHHHHHHHHHhCC-----eE
Confidence 458888888886655 35688999999999999886 23455543 4556666677665 45
Q ss_pred EEeChHH---HHHHHHHHhccccccceeeeccCCCCC
Q 038482 85 VGHDSGT---YMACFLCSFRANRIKALVNLSVVFNPN 118 (234)
Q Consensus 85 ~GhS~Gg---~ia~~~a~~~p~~v~~lvl~~~~~~~~ 118 (234)
+.|..|+ .++......-..+=--+|++++....+
T Consensus 198 I~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 198 ISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred EccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCccccc
Confidence 5555776 344444433344555688899888763
No 470
>PRK02399 hypothetical protein; Provisional
Probab=22.06 E-value=2.1e+02 Score=24.04 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=35.5
Q ss_pred CceEEEecCCCCcchhhHHHHHHHHhcCCeEEeecCCCCCCCC
Q 038482 9 GPEILFLYGFPELRYSRCHQTIALASLSYRAVAPDLRGFGDTD 51 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~ 51 (234)
.+|+|-+-=+|.+.-+-..+.+.|.+.||.|+++..-|.|...
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGra 227 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRA 227 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHH
Confidence 4577777777777778888899999999999999999998643
No 471
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=22.02 E-value=1.2e+02 Score=22.24 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCh
Q 038482 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDS 89 (234)
Q Consensus 61 ~~~~a~dl~~~~~~~~~~~~~~~l~GhS~ 89 (234)
++.++.-+.++++..++ .+-.++|||-
T Consensus 132 ~~aL~~L~~~L~~~y~i--~~~~IvGH~d 158 (185)
T PRK11789 132 YQALAALTRALRAAYPI--IAERITGHSD 158 (185)
T ss_pred HHHHHHHHHHHHHHcCC--CHHhEEehhh
Confidence 34445555666677777 5678999974
No 472
>PRK07053 glutamine amidotransferase; Provisional
Probab=22.02 E-value=3.5e+02 Score=20.63 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHH
Q 038482 64 VIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLC 98 (234)
Q Consensus 64 ~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a 98 (234)
+...+.++++..-. ...-++|.++|..+.....
T Consensus 68 ~~~~~~~~i~~~~~--~~~PvlGIC~G~Qlla~al 100 (234)
T PRK07053 68 FLAPEIALLRQRLA--AGLPTLGICLGAQLIARAL 100 (234)
T ss_pred cHHHHHHHHHHHHH--CCCCEEEECccHHHHHHHc
Confidence 44455566655433 4567999999998776554
No 473
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=4.2e+02 Score=22.58 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHhcCCeEEeecCCCCCCCCccc-cc-ccccHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 038482 23 YSRCHQTIALASLSYRAVAPDLRGFGDTDELL-EM-TSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHD 88 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-~~-~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS 88 (234)
.++..+.+.+.+...+++++|=---=.|+.-. .+ ...-..+.+.++..+.++-++ .++++||=
T Consensus 155 t~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i---~~fiVGHV 219 (456)
T COG1066 155 TNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI---AIFIVGHV 219 (456)
T ss_pred cCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC---eEEEEEEE
Confidence 35667777787777899999843222222211 00 223467788888888888887 79999994
No 474
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.77 E-value=2.1e+02 Score=22.73 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcC--CCCCcEEEEEeCh--HHHHHHHHHHh
Q 038482 65 IGDLIGLIDLVA--PNDEKVFVVGHDS--GTYMACFLCSF 100 (234)
Q Consensus 65 a~dl~~~~~~~~--~~~~~~~l~GhS~--Gg~ia~~~a~~ 100 (234)
+..+.+++++.+ +.++++.++|.|. |-.++..+..+
T Consensus 142 p~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ 181 (286)
T PRK14175 142 PLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK 181 (286)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence 455667777764 3368999999987 66667666543
No 475
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=21.76 E-value=2.5e+02 Score=22.92 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=26.3
Q ss_pred CceEEEecCCCCcchh-----hHHHHHHHHhcCCeEEee
Q 038482 9 GPEILFLYGFPELRYS-----RCHQTIALASLSYRAVAP 42 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 42 (234)
...+||+.|++++... ++.+.+.|.++|+.+...
T Consensus 252 d~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~gi~v~r~ 290 (329)
T PRK14483 252 DNFILLINGLGATTLMEQYIFANDIRRLLELEGLQITFV 290 (329)
T ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4689999999998764 577788888878776553
No 476
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=21.74 E-value=2.5e+02 Score=22.83 Aligned_cols=33 Identities=6% Similarity=-0.150 Sum_probs=25.9
Q ss_pred CceEEEecCCCCcchh-----hHHHHHHHHhcCCeEEe
Q 038482 9 GPEILFLYGFPELRYS-----RCHQTIALASLSYRAVA 41 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-----~~~~~~~l~~~g~~v~~ 41 (234)
...+||+.|++++... ++.+.+.|.+.|+.+..
T Consensus 249 d~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~gi~v~r 286 (326)
T TIGR02362 249 DHYAVLVNNLGGTTPMEQMVFNNDVHELLALEALHLPF 286 (326)
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999998764 57778888887876555
No 477
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=21.63 E-value=68 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.9
Q ss_pred EEEEeChHHHHHHHHHHh
Q 038482 83 FVVGHDSGTYMACFLCSF 100 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~~ 100 (234)
.+.|.|.||.+|+.++..
T Consensus 46 liaGTStGgiiA~~la~~ 63 (349)
T cd07214 46 VIAGTSTGGLITAMLTAP 63 (349)
T ss_pred EEeeCCHHHHHHHHHhcC
Confidence 677999999999999874
No 478
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.62 E-value=4.5e+02 Score=21.43 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCC
Q 038482 30 IALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAP 77 (234)
Q Consensus 30 ~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~ 77 (234)
..|+++||.|..+-++..- +.... ...++.++=.+|+..+++++++
T Consensus 23 ~Ll~~~g~~v~gv~M~nWd-~~de~-~s~cp~e~D~~da~~Vc~~LnI 68 (377)
T KOG2805|consen 23 RLLAARGYNVTGVFMKNWD-SLDEF-GSQCPAERDWKDAKRVCKQLNI 68 (377)
T ss_pred HHHHhcCCCeeEEeeeccc-ccccc-ccCCCchhhHHHHHHHHHHhCC
Confidence 3456679999998887762 22211 1356666667778888888876
No 479
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=21.59 E-value=1.3e+02 Score=16.06 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=21.6
Q ss_pred cCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHH
Q 038482 35 LSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLID 73 (234)
Q Consensus 35 ~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~ 73 (234)
.+|.+.+||+||.-. ...|+++..+.+.+++.
T Consensus 12 ~~y~~~~pdlpg~~t-------~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 12 GGYVAYFPDLPGCFT-------QGDTLEEALENAKEALE 43 (48)
T ss_dssp SSEEEEETTCCTCEE-------EESSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccChhh-------cCCCHHHHHHHHHHHHH
Confidence 368999999997541 23466766666666654
No 480
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.51 E-value=1.6e+02 Score=23.90 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=29.7
Q ss_pred ceEEEecCCC--Ccch--hhHHHHHHHHhcCCeEEeecCCCCCCCCcc
Q 038482 10 PEILFLYGFP--ELRY--SRCHQTIALASLSYRAVAPDLRGFGDTDEL 53 (234)
Q Consensus 10 ~~lv~ihG~~--~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 53 (234)
-|||.|-.+. |++. .-..+++.|.++|+++.++- ||||...+.
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS-RGYg~~~~~ 81 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS-RGYGRKSKG 81 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc-CCCCCCCCC
Confidence 4777776553 3332 23556788888899988886 799987664
No 481
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.49 E-value=1.1e+02 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=27.0
Q ss_pred CcEEEEEeChHHHHHHHHHHh-ccccccceeeeccCC
Q 038482 80 EKVFVVGHDSGTYMACFLCSF-RANRIKALVNLSVVF 115 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia~~~a~~-~p~~v~~lvl~~~~~ 115 (234)
.+++++|-|.||--|+..... .|..+..-|++-.-.
T Consensus 157 ~~iV~IGaStGGp~AL~~il~~lP~~~p~pvvIvQHM 193 (350)
T COG2201 157 RKIVAIGASTGGPAALRAVLPALPADFPAPVVIVQHM 193 (350)
T ss_pred ccEEEEEeCCCCHHHHHHHHHhCCCCCCCCEEEEecC
Confidence 478999999999999887764 588777555555433
No 482
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=21.46 E-value=1.6e+02 Score=19.99 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=20.4
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
..+|++-| -..|.++++.+.+.|++|+.+=
T Consensus 97 d~ivLvSg----D~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSG----DSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEEC----cHHHHHHHHHHHHcCCEEEEEE
Confidence 46777733 3679999999999999888874
No 483
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=21.40 E-value=4e+02 Score=20.78 Aligned_cols=73 Identities=16% Similarity=0.074 Sum_probs=46.3
Q ss_pred CCceEEEecCCCCcchhhHHHHHHHHhcCC-eEEeecCCCCCCCCc-ccccccccHHHHHHHHHHHHHhcCCCCCcEEE-
Q 038482 8 QGPEILFLYGFPELRYSRCHQTIALASLSY-RAVAPDLRGFGDTDE-LLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFV- 84 (234)
Q Consensus 8 ~~~~lv~ihG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~G~S~~-~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l- 84 (234)
.+.||++=-|...+...|...++.+.+.|- +++... + |-|.- +......++..+.. +-+..+. ++.+
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~-r--G~s~y~~~~~~~~dl~~i~~----lk~~~~~---pV~~d 200 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCE-R--GIRTFEKATRNTLDLSAVPV----LKKETHL---PIIVD 200 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE-C--CCCCCCCCCcCCcCHHHHHH----HHHhhCC---CEEEc
Confidence 467999999999999999999999987665 455543 3 33332 22113344433331 1122344 7888
Q ss_pred EEeChH
Q 038482 85 VGHDSG 90 (234)
Q Consensus 85 ~GhS~G 90 (234)
-+||.|
T Consensus 201 s~Hs~G 206 (260)
T TIGR01361 201 PSHAAG 206 (260)
T ss_pred CCCCCC
Confidence 799988
No 484
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.34 E-value=1.5e+02 Score=21.62 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=25.7
Q ss_pred CCceEEEecCCCC---cchhhHHHHHHHHhcCCeEEeecC
Q 038482 8 QGPEILFLYGFPE---LRYSRCHQTIALASLSYRAVAPDL 44 (234)
Q Consensus 8 ~~~~lv~ihG~~~---~~~~~~~~~~~l~~~g~~v~~~D~ 44 (234)
.+.|+++++.+-. ..-.....++.|.+.|+.|+-|+-
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 4568888886543 233446778889888988887763
No 485
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=21.33 E-value=4.2e+02 Score=21.31 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=40.3
Q ss_pred ceEEEecCCCCcchhhHHHHHHHHhc-CCeEEeecCCC------CCCCCccc---------------ccccccHHHHHHH
Q 038482 10 PEILFLYGFPELRYSRCHQTIALASL-SYRAVAPDLRG------FGDTDELL---------------EMTSYTCFHVIGD 67 (234)
Q Consensus 10 ~~lv~ihG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G------~G~S~~~~---------------~~~~~~~~~~a~d 67 (234)
+.+++|-|-.+++. ..++..|++. +..++..|-.- .|-..+.. ..+.++..++.++
T Consensus 4 ~~~i~i~GptgsGK--t~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 4 PKVIVIVGPTASGK--TALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred ceEEEEECCCCcCH--HHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 46777777766654 3445555554 45666666421 11111110 0134788888888
Q ss_pred HHHHHHhcCCCCCcEEEE
Q 038482 68 LIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 68 l~~~~~~~~~~~~~~~l~ 85 (234)
....++....+++.++|+
T Consensus 82 a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 82 ALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 888887653222445565
No 486
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=21.31 E-value=74 Score=25.69 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=14.4
Q ss_pred EEEEeChHHHHHHHHHH
Q 038482 83 FVVGHDSGTYMACFLCS 99 (234)
Q Consensus 83 ~l~GhS~Gg~ia~~~a~ 99 (234)
.+.|.|.||.+|+.+++
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 67799999999988764
No 487
>PRK03846 adenylylsulfate kinase; Provisional
Probab=21.28 E-value=2.3e+02 Score=20.75 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCceEEEecCCCCcchh-h-HHHHHHHHhcCCeEEeec
Q 038482 7 GQGPEILFLYGFPELRYS-R-CHQTIALASLSYRAVAPD 43 (234)
Q Consensus 7 g~~~~lv~ihG~~~~~~~-~-~~~~~~l~~~g~~v~~~D 43 (234)
++.|.++.+.|..+++.. . ..+...|...|+.++.+|
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 356788888898776653 3 344455555567777776
No 488
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=21.22 E-value=3.2e+02 Score=21.01 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeChHH--HHHHHHHHh-c-cccccceeee
Q 038482 61 CFHVIGDLIGLIDLVAPNDEKVFVVGHDSGT--YMACFLCSF-R-ANRIKALVNL 111 (234)
Q Consensus 61 ~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg--~ia~~~a~~-~-p~~v~~lvl~ 111 (234)
++..+..+.+.++..+. +=+++|.|-|- .++..+|.+ . |++|-++++-
T Consensus 2 ~~~l~~~L~~~~~~~g~---~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp 53 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGA---KGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMP 53 (242)
T ss_dssp HHHHHHHHHHHHHHHTT---SEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCC---CeEEEEcCCCCCHHHHHHHHHHHhhhccccccccc
Confidence 35667777888887776 56779999997 444444433 2 6777776664
No 489
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.16 E-value=2.1e+02 Score=18.86 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=21.8
Q ss_pred EEecCCCCcchhhHHHHHHHHhcCCeEEeec
Q 038482 13 LFLYGFPELRYSRCHQTIALASLSYRAVAPD 43 (234)
Q Consensus 13 v~ihG~~~~~~~~~~~~~~l~~~g~~v~~~D 43 (234)
|++-|.+.+...-..+...|...|..+..++
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~ 33 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLH 33 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcc
Confidence 5677888777766677777766677776663
No 490
>PF15660 Imm49: Immunity protein 49
Probab=21.08 E-value=71 Score=18.66 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.2
Q ss_pred ccccHHHHHHHHHHHHHhcC
Q 038482 57 TSYTCFHVIGDLIGLIDLVA 76 (234)
Q Consensus 57 ~~~~~~~~a~dl~~~~~~~~ 76 (234)
.-|.+.+|.+|+.++++.+.
T Consensus 62 rlyrlrdwtddladwvdrlr 81 (84)
T PF15660_consen 62 RLYRLRDWTDDLADWVDRLR 81 (84)
T ss_pred hhhhhhhhhhHHHHHHHHHh
Confidence 46889999999999998774
No 491
>CHL00175 minD septum-site determining protein; Validated
Probab=21.05 E-value=2e+02 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=27.6
Q ss_pred CceEEEecCCCCcchhh--HHHHHHHHhcCCeEEeecCC
Q 038482 9 GPEILFLYGFPELRYSR--CHQTIALASLSYRAVAPDLR 45 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~--~~~~~~l~~~g~~v~~~D~~ 45 (234)
+..|.++.|-||.+... ..++..|++.|++|+.+|+-
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35777888788766554 45567788889999999853
No 492
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=20.98 E-value=1.2e+02 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.054 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHhcCCeEEeec-CCCCCCCCc
Q 038482 23 YSRCHQTIALASLSYRAVAPD-LRGFGDTDE 52 (234)
Q Consensus 23 ~~~~~~~~~l~~~g~~v~~~D-~~G~G~S~~ 52 (234)
..|...++.|++.|..|++++ +|+.+.+..
T Consensus 83 eny~~tirnLa~~GI~vvCYNfMpv~dWtRT 113 (362)
T COG1312 83 ENYKQTIRNLARAGIKVVCYNFMPVFDWTRT 113 (362)
T ss_pred HHHHHHHHHHHhcCCcEEEeccccccCcccc
Confidence 468888999999999999999 778887654
No 493
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=20.91 E-value=83 Score=21.73 Aligned_cols=31 Identities=10% Similarity=-0.167 Sum_probs=22.3
Q ss_pred cCCCCcchhhHHHHHHHHhcCCeEEeecCCC
Q 038482 16 YGFPELRYSRCHQTIALASLSYRAVAPDLRG 46 (234)
Q Consensus 16 hG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G 46 (234)
++.||.......+++.|.+.|++|..+-...
T Consensus 9 ~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 9 PNIGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp TSSSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CCCChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4446666777889999999999998885443
No 494
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.90 E-value=2e+02 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=24.3
Q ss_pred CceEEEecCCCCcchh-----hHHHHHHHHhcCCeEEee
Q 038482 9 GPEILFLYGFPELRYS-----RCHQTIALASLSYRAVAP 42 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 42 (234)
+|.|++.||....... |..+++.|.++|++++..
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~ 217 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP 217 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 5678888887664444 557788887767887755
No 495
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.88 E-value=3.6e+02 Score=22.45 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=29.3
Q ss_pred CceEEEecCCCCcc---hhhHHHHHHHHhc-CCeEEeecCCCCCC
Q 038482 9 GPEILFLYGFPELR---YSRCHQTIALASL-SYRAVAPDLRGFGD 49 (234)
Q Consensus 9 ~~~lv~ihG~~~~~---~~~~~~~~~l~~~-g~~v~~~D~~G~G~ 49 (234)
.|.+|+|.+.+.+. ++...+++.+.+. |..|+.+.-+|+..
T Consensus 87 ~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf~g 131 (396)
T cd01979 87 NPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASGLDY 131 (396)
T ss_pred CCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCCccc
Confidence 36788888777644 4677777777643 78899888888753
No 496
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=20.84 E-value=7.1e+02 Score=23.43 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred CceEEEecCCCCcchhhH---HHHHHHHhcCCeEEeecCCCCCCCCcccccccccHHHHHHHHHHHHHhcCCCCCcEEEE
Q 038482 9 GPEILFLYGFPELRYSRC---HQTIALASLSYRAVAPDLRGFGDTDELLEMTSYTCFHVIGDLIGLIDLVAPNDEKVFVV 85 (234)
Q Consensus 9 ~~~lv~ihG~~~~~~~~~---~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~~~~~~~~~~~~~l~ 85 (234)
...+|||-|.+++...-+ .++..+... +.++-+|.+..-.++... ....+-...+.+++|. +-+.|.
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~-~~av~v~~~~~~~~~~~~-------~~~l~~~~~Lae~lGa--e~~~l~ 318 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAK-WTAVYVETPELHRLSEKE-------ARRLHENLRLAEELGA--EIVTLY 318 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCC-eEEEEEeccccccccHHH-------HHHHHHHHHHHHHhCC--eEEEEe
Confidence 457899999998887664 445556554 888888866533222111 1222333334445555 444555
Q ss_pred EeChHHHHH
Q 038482 86 GHDSGTYMA 94 (234)
Q Consensus 86 GhS~Gg~ia 94 (234)
|.+.+..++
T Consensus 319 ~~dv~~~i~ 327 (890)
T COG2205 319 GGDVAKAIA 327 (890)
T ss_pred CCcHHHHHH
Confidence 555544444
No 497
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=20.82 E-value=2.4e+02 Score=22.94 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=27.4
Q ss_pred ceEEEecCC--CCcch--hhHHHHHHHHhcCCeEEeecCCCCCCCC
Q 038482 10 PEILFLYGF--PELRY--SRCHQTIALASLSYRAVAPDLRGFGDTD 51 (234)
Q Consensus 10 ~~lv~ihG~--~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~G~S~ 51 (234)
.|||.|-.+ |+++. .-..+++.|.++|+++-++- ||||.+.
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils-RGYg~~~ 93 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS-RGYGGKL 93 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC-CCCCCCc
Confidence 367777433 34332 34566778888899888776 8999765
No 498
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=20.82 E-value=2.4e+02 Score=23.01 Aligned_cols=48 Identities=17% Similarity=-0.028 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCcEEEEEeChHHHHHHHHHHhccccccce
Q 038482 57 TSYTCFHVIGDLIGLIDLVAPNDEKVFVVGHDSGTYMACFLCSFRANRIKAL 108 (234)
Q Consensus 57 ~~~~~~~~a~dl~~~~~~~~~~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~l 108 (234)
..|+..++++.+..+++..++ .++. |.|-.|.-|..+....|.+++++
T Consensus 258 GvY~~~dy~dI~~~l~~~W~i--~~~~--gL~~eg~~Ard~l~~l~~r~~r~ 305 (330)
T PF03405_consen 258 GVYTPRDYADILEPLLRRWKI--ESRT--GLSGEGEKARDYLCALPARLRRF 305 (330)
T ss_dssp TSS-HHHHHHHHHHHHHHTTG--GG----S--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcc--Cccc--CCChHHHHHHHHHHhhHHHHHHH
Confidence 468899999877788999999 7777 99999999999998889888776
No 499
>PLN03093 Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional
Probab=20.46 E-value=3.6e+02 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=12.3
Q ss_pred CcEEEEEeChHHHHH
Q 038482 80 EKVFVVGHDSGTYMA 94 (234)
Q Consensus 80 ~~~~l~GhS~Gg~ia 94 (234)
.+++++|+|++.+.-
T Consensus 198 ~~ivliGNSFe~y~~ 212 (273)
T PLN03093 198 NHIALFGNSFEMYEE 212 (273)
T ss_pred CCEEEEeCCHHHHHH
Confidence 689999999987664
No 500
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=20.46 E-value=1.8e+02 Score=20.59 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred EEeecCCCCCCCCcccccc-cccHHHHHHHHHHHHHhc
Q 038482 39 AVAPDLRGFGDTDELLEMT-SYTCFHVIGDLIGLIDLV 75 (234)
Q Consensus 39 v~~~D~~G~G~S~~~~~~~-~~~~~~~a~dl~~~~~~~ 75 (234)
++++| +|||.+++-.... ..+-.++..++...+...
T Consensus 1 ~v~ld-~GHg~~~~Ga~~~~g~~E~~~~~~ia~~l~~~ 37 (172)
T cd02696 1 TIVID-PGHGGKDPGAVGNDGLKEKDINLAIALKLAKL 37 (172)
T ss_pred CEEEe-CCCCCCCCCCcCCCCCchHHHHHHHHHHHHHH
Done!