Query 038485
Match_columns 184
No_of_seqs 137 out of 2821
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 5.8E-18 1.3E-22 151.2 12.0 159 9-178 46-226 (968)
2 KOG4194 Membrane glycoprotein 99.6 4.2E-16 9.1E-21 128.1 -0.1 136 35-180 246-381 (873)
3 PLN00113 leucine-rich repeat r 99.6 1.6E-14 3.4E-19 129.2 9.5 134 33-176 139-272 (968)
4 PLN03150 hypothetical protein; 99.5 4.2E-13 9.2E-18 114.9 11.8 125 23-155 403-532 (623)
5 KOG4194 Membrane glycoprotein 99.4 9.5E-15 2.1E-19 120.2 -0.2 137 33-177 268-405 (873)
6 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 106.0 -4.8 130 33-176 32-162 (264)
7 PF14580 LRR_9: Leucine-rich r 99.3 6.5E-12 1.4E-16 90.9 4.6 110 33-153 18-128 (175)
8 KOG0617 Ras suppressor protein 99.2 3.8E-13 8.3E-18 95.8 -4.2 131 33-177 55-186 (264)
9 PLN03150 hypothetical protein; 99.1 2.2E-10 4.8E-15 98.3 8.3 91 62-157 419-509 (623)
10 KOG4237 Extracellular matrix p 99.1 2.1E-11 4.5E-16 96.6 0.9 148 18-175 39-199 (498)
11 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.7E-15 82.5 4.7 109 58-177 16-126 (175)
12 KOG0618 Serine/threonine phosp 99.0 3.5E-11 7.5E-16 103.7 -1.4 130 33-175 358-487 (1081)
13 KOG0444 Cytoskeletal regulator 99.0 6.1E-11 1.3E-15 99.2 -0.2 130 37-178 129-259 (1255)
14 cd00116 LRR_RI Leucine-rich re 98.9 9.5E-10 2E-14 86.6 4.7 15 33-47 80-94 (319)
15 KOG0444 Cytoskeletal regulator 98.9 3.3E-11 7.1E-16 100.7 -3.8 130 32-175 243-373 (1255)
16 cd00116 LRR_RI Leucine-rich re 98.9 1.3E-09 2.9E-14 85.7 5.1 143 34-177 137-291 (319)
17 KOG0472 Leucine-rich repeat pr 98.9 3.6E-10 7.7E-15 90.0 1.5 117 36-159 390-526 (565)
18 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.5E-15 88.5 -0.5 132 34-180 284-415 (490)
19 KOG0472 Leucine-rich repeat pr 98.9 2.2E-11 4.9E-16 96.7 -6.1 129 35-178 161-289 (565)
20 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.2E-14 64.5 3.0 60 35-101 2-61 (61)
21 PF13855 LRR_8: Leucine rich r 98.8 1.5E-09 3.3E-14 65.0 1.9 58 91-149 3-60 (61)
22 KOG0618 Serine/threonine phosp 98.8 1.4E-09 3E-14 94.0 0.8 129 33-174 382-510 (1081)
23 PRK15370 E3 ubiquitin-protein 98.7 5.8E-08 1.3E-12 84.7 8.0 101 34-154 199-299 (754)
24 PRK15387 E3 ubiquitin-protein 98.7 1.2E-07 2.7E-12 82.7 8.7 36 34-76 222-257 (788)
25 PLN03210 Resistant to P. syrin 98.6 2.2E-07 4.8E-12 85.1 10.3 107 33-150 610-716 (1153)
26 PRK15387 E3 ubiquitin-protein 98.6 5.8E-08 1.3E-12 84.7 4.5 78 90-179 383-460 (788)
27 PRK15370 E3 ubiquitin-protein 98.6 5.3E-07 1.2E-11 78.8 10.1 121 33-178 177-297 (754)
28 KOG0532 Leucine-rich repeat (L 98.5 7E-09 1.5E-13 85.8 -2.3 128 32-176 119-246 (722)
29 KOG1259 Nischarin, modulator o 98.5 2.2E-08 4.8E-13 77.5 0.5 109 33-154 306-415 (490)
30 KOG4237 Extracellular matrix p 98.5 5.9E-08 1.3E-12 77.4 2.4 94 53-151 266-359 (498)
31 PLN03210 Resistant to P. syrin 98.4 1.6E-06 3.4E-11 79.6 10.7 127 33-174 588-714 (1153)
32 KOG1644 U2-associated snRNP A' 98.3 1.3E-06 2.8E-11 64.0 5.4 127 35-172 20-148 (233)
33 KOG1859 Leucine-rich repeat pr 98.3 7E-09 1.5E-13 88.1 -7.3 128 35-177 165-292 (1096)
34 KOG4658 Apoptotic ATPase [Sign 98.3 4E-07 8.6E-12 80.8 3.2 108 33-149 544-653 (889)
35 COG4886 Leucine-rich repeat (L 98.3 4.3E-07 9.4E-12 73.9 2.7 128 35-178 141-291 (394)
36 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.8E-12 76.1 -0.3 117 33-154 145-262 (505)
37 COG4886 Leucine-rich repeat (L 98.2 1.6E-06 3.5E-11 70.6 4.5 104 34-149 116-220 (394)
38 PF12799 LRR_4: Leucine Rich r 98.2 3E-06 6.6E-11 47.1 3.7 38 114-153 2-39 (44)
39 KOG0532 Leucine-rich repeat (L 98.2 3.9E-07 8.3E-12 75.8 0.1 106 35-153 144-249 (722)
40 KOG4579 Leucine-rich repeat (L 98.0 5E-07 1.1E-11 62.5 -1.2 111 33-154 52-162 (177)
41 KOG4579 Leucine-rich repeat (L 98.0 9.8E-07 2.1E-11 61.1 -0.9 84 61-151 53-136 (177)
42 KOG3207 Beta-tubulin folding c 98.0 1.4E-06 3.1E-11 70.3 -0.4 75 20-99 157-232 (505)
43 KOG4658 Apoptotic ATPase [Sign 97.9 1E-05 2.3E-10 72.0 4.8 111 34-155 523-635 (889)
44 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 44.5 3.5 36 90-126 2-37 (44)
45 KOG0531 Protein phosphatase 1, 97.9 2.6E-06 5.7E-11 70.0 0.8 106 33-152 94-200 (414)
46 KOG0531 Protein phosphatase 1, 97.7 7.8E-06 1.7E-10 67.2 0.2 107 58-176 92-198 (414)
47 KOG1644 U2-associated snRNP A' 97.7 9E-05 2E-09 54.5 4.9 103 35-147 43-149 (233)
48 KOG1909 Ran GTPase-activating 97.6 2.1E-05 4.5E-10 62.1 1.6 94 33-126 156-254 (382)
49 KOG1859 Leucine-rich repeat pr 97.5 5.2E-06 1.1E-10 71.2 -3.7 106 62-180 165-270 (1096)
50 KOG2982 Uncharacterized conser 97.4 3.8E-05 8.3E-10 59.7 0.2 86 33-123 70-156 (418)
51 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.7E-09 63.7 3.2 85 59-148 146-230 (699)
52 KOG1909 Ran GTPase-activating 97.4 8E-05 1.7E-09 58.8 1.7 41 34-74 92-133 (382)
53 KOG3665 ZYG-1-like serine/thre 97.1 0.00079 1.7E-08 58.8 4.9 113 33-154 147-266 (699)
54 KOG2123 Uncharacterized conser 97.0 2.6E-05 5.6E-10 60.1 -4.1 101 33-144 18-123 (388)
55 KOG2739 Leucine-rich acidic nu 97.0 0.00028 6E-09 53.7 1.1 86 59-152 41-130 (260)
56 COG5238 RNA1 Ran GTPase-activa 96.9 0.0026 5.7E-08 49.2 5.5 119 57-176 88-226 (388)
57 KOG2982 Uncharacterized conser 96.7 0.00095 2.1E-08 52.2 1.9 126 20-152 82-263 (418)
58 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.7E-08 50.2 2.0 87 87-177 41-129 (260)
59 PF08263 LRRNT_2: Leucine rich 96.5 0.0026 5.5E-08 35.0 2.3 23 8-30 20-43 (43)
60 PRK15386 type III secretion pr 96.2 0.023 4.9E-07 46.7 7.4 53 34-99 52-104 (426)
61 PF13306 LRR_5: Leucine rich r 96.2 0.02 4.4E-07 38.7 6.3 101 34-147 12-112 (129)
62 KOG2123 Uncharacterized conser 96.1 0.00023 5.1E-09 55.0 -4.2 88 60-155 18-105 (388)
63 KOG2120 SCF ubiquitin ligase, 95.8 0.0039 8.4E-08 48.9 1.2 39 110-149 310-349 (419)
64 PF13306 LRR_5: Leucine rich r 95.6 0.034 7.4E-07 37.5 5.1 92 52-152 3-94 (129)
65 COG5238 RNA1 Ran GTPase-activa 95.5 0.02 4.3E-07 44.5 3.9 142 33-176 29-197 (388)
66 KOG2120 SCF ubiquitin ligase, 94.4 0.0027 6E-08 49.7 -3.3 87 62-152 186-274 (419)
67 PF00560 LRR_1: Leucine Rich R 94.3 0.022 4.7E-07 26.4 0.9 16 115-131 2-17 (22)
68 PRK15386 type III secretion pr 94.1 0.13 2.9E-06 42.4 5.6 95 33-148 71-187 (426)
69 PF13504 LRR_7: Leucine rich r 93.3 0.061 1.3E-06 23.2 1.3 11 140-150 3-13 (17)
70 smart00369 LRR_TYP Leucine-ric 92.6 0.15 3.3E-06 24.3 2.4 17 114-131 3-19 (26)
71 smart00370 LRR Leucine-rich re 92.6 0.15 3.3E-06 24.3 2.4 17 114-131 3-19 (26)
72 KOG3864 Uncharacterized conser 92.2 0.043 9.4E-07 40.6 0.1 82 61-147 101-185 (221)
73 KOG0473 Leucine-rich repeat pr 91.4 0.0024 5.3E-08 48.3 -7.2 84 59-150 40-123 (326)
74 KOG1947 Leucine rich repeat pr 86.4 1.1 2.5E-05 36.9 4.3 93 58-150 211-307 (482)
75 PF13516 LRR_6: Leucine Rich r 85.2 0.35 7.7E-06 22.5 0.5 8 64-71 5-12 (24)
76 KOG0473 Leucine-rich repeat pr 85.0 0.016 3.4E-07 44.1 -6.5 87 85-177 38-124 (326)
77 KOG3864 Uncharacterized conser 79.6 0.63 1.4E-05 34.6 0.2 85 89-173 101-188 (221)
78 smart00365 LRR_SD22 Leucine-ri 78.7 2.2 4.8E-05 20.6 1.9 15 138-152 2-16 (26)
79 smart00368 LRR_RI Leucine rich 76.7 2.4 5.1E-05 20.6 1.7 15 138-152 2-16 (28)
80 KOG3763 mRNA export factor TAP 70.4 3.3 7.1E-05 35.4 2.1 64 33-103 217-284 (585)
81 smart00364 LRR_BAC Leucine-ric 70.1 3.1 6.8E-05 20.1 1.2 15 115-130 4-18 (26)
82 KOG1947 Leucine rich repeat pr 62.9 8.4 0.00018 31.8 3.2 108 33-145 213-328 (482)
83 KOG3763 mRNA export factor TAP 61.4 6.9 0.00015 33.5 2.4 66 87-153 216-285 (585)
84 TIGR00864 PCC polycystin catio 60.2 7.5 0.00016 39.5 2.7 32 95-126 1-32 (2740)
85 KOG4308 LRR-containing protein 41.7 3.4 7.4E-05 35.0 -2.4 116 60-176 171-302 (478)
86 smart00367 LRR_CC Leucine-rich 35.1 31 0.00066 16.0 1.4 16 137-152 1-17 (26)
87 KOG4308 LRR-containing protein 34.5 4.2 9E-05 34.4 -2.9 68 58-125 112-184 (478)
88 TIGR00864 PCC polycystin catio 32.4 30 0.00064 35.7 1.9 32 40-74 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=5.8e-18 Score=151.15 Aligned_cols=159 Identities=25% Similarity=0.341 Sum_probs=101.3
Q ss_pred cccCCCCCCCCCCCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 9 YKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 9 ~~~~~~~~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
..++.|+ .+.++|.|.||.|.+ .++++.|++++|.+.. ..+..|..+++|+.|++++|.+.+..|... +..+
T Consensus 46 ~~~~~w~-~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~---~~~l 117 (968)
T PLN00113 46 KYLSNWN-SSADVCLWQGITCNN-SSRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIPDDI---FTTS 117 (968)
T ss_pred ccCCCCC-CCCCCCcCcceecCC-CCcEEEEEecCCCccc---cCChHHhCCCCCCEEECCCCccCCcCChHH---hccC
Confidence 3467896 377899999999986 5689999999988876 445556777788888888877776666541 2245
Q ss_pred CCCcEEECCCCCC----------------------CchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485 89 NNLKMLNLSGNSF----------------------NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG 146 (184)
Q Consensus 89 ~~L~~L~l~~n~~----------------------~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls 146 (184)
++|++|++++|.+ .+..|..++.+++|++|++++|.+.+.+|. .+..+++|++|+++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~ 196 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeecc
Confidence 5555555555554 444455555566666666666665545554 55566666666666
Q ss_pred CCCCCccccCccccccccceeeccccccceee
Q 038485 147 GNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 147 ~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+|.+.+.+| ..+..+++|+.+++++|.+.+
T Consensus 197 ~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 197 SNQLVGQIP--RELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CCCCcCcCC--hHHcCcCCccEEECcCCccCC
Confidence 666655444 233345555566666665543
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=4.2e-16 Score=128.08 Aligned_cols=136 Identities=26% Similarity=0.368 Sum_probs=111.2
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
.++.|.|..|.+.. +....|..+.+++.|+++.|+++...... +.+++.|+.|++++|.|....++.+....+
T Consensus 246 Sl~nlklqrN~I~k---L~DG~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 246 SLQNLKLQRNDISK---LDDGAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhhhcCccc---ccCcceeeecccceeecccchhhhhhccc----ccccchhhhhccchhhhheeecchhhhccc
Confidence 34444455555554 66778888888999999999888766555 788899999999999998888888888899
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI 180 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~ 180 (184)
|+.|++++|+++ +++.+.+..+..|+.|++++|.++... .++|..+++|..++|++|.++|.|
T Consensus 319 L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 319 LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCCeEEEEE
Confidence 999999999998 788778888888999999999988743 477888999999999999999876
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=1.6e-14 Score=129.24 Aligned_cols=134 Identities=26% Similarity=0.333 Sum_probs=68.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ..+..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..|..++.+
T Consensus 139 l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 139 IPNLETLDLSNNMLSG---EIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred cCCCCEEECcCCcccc---cCChHHhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 3445555555555443 22233455556666666666555555544 5555555555555555555555555555
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
.+|+.|++++|.+.+.+|. .++.+++|++|++++|.+.+..| ..+..+++|+.++++.|.+
T Consensus 212 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC--hhHhCCCCCCEEECcCCee
Confidence 5555555555555544444 45555555555555555554433 2223344444444444444
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=4.2e-13 Score=114.88 Aligned_cols=125 Identities=27% Similarity=0.333 Sum_probs=106.0
Q ss_pred CceeEEecCCC----CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485 23 QWERVECSNTM----SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98 (184)
Q Consensus 23 ~~~gv~c~~~~----~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~ 98 (184)
.|.||.|.... ..++.|+|++|.+.+ ..+..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g---~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~ 475 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRG---FIPNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSY 475 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccc---cCCHHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCC
Confidence 79999995311 258899999999986 44455688999999999999999999887 89999999999999
Q ss_pred CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC-CCCcEEECCCCCCCcccc
Q 038485 99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL-RDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~-~~L~~L~ls~N~l~~~~~ 155 (184)
|.+++.+|+.++.+++|+.|++++|.++|.+|. .+... .++..+++.+|......|
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence 999999999999999999999999999999997 56553 567888998887544333
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=9.5e-15 Score=120.23 Aligned_cols=137 Identities=24% Similarity=0.263 Sum_probs=94.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+.++.+|+|+.|+++. +..+.+.++..|+.|++|.|.|+...++. +..-++|++|++++|+++...++.|..+
T Consensus 268 l~kme~l~L~~N~l~~---vn~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQA---VNEGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred ecccceeecccchhhh---hhcccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHH
Confidence 5677888888888887 77777778888888888888888777776 7777788888888888876666666666
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc-cccccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK-GTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~l~~L~~~~l~~~~~~ 177 (184)
..|+.|.++.|.+. .+..+.|..+.+|++||+++|.++..+.+. ..|..|++|..+.+.+|.+.
T Consensus 341 ~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 341 SQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred HHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 66777777777665 555556666666666666666666554432 33445555555555555553
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.7e-15 Score=106.02 Aligned_cols=130 Identities=24% Similarity=0.354 Sum_probs=102.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
++.++.|.+++|.++. +++.+ ..+.+|+.|++.+|++... |.+ ++.++.|+.|++..|++. ..|.+|+.+
T Consensus 32 ~s~ITrLtLSHNKl~~---vppni-a~l~nlevln~~nnqie~l-p~~----issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV---VPPNI-AELKNLEVLNLSNNQIEEL-PTS----ISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceee---cCCcH-HHhhhhhhhhcccchhhhc-Chh----hhhchhhhheecchhhhh-cCccccCCC
Confidence 6788999999999885 66665 8889999999999999854 444 889999999999999887 789999999
Q ss_pred CCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 113 SSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
+.|+.||+.+|.+.. .+|. .|-.++.|+.|+++.|.+.-.+|+.+. |++|.++.++.|++
T Consensus 102 p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe~lp~dvg~---lt~lqil~lrdndl 162 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFEILPPDVGK---LTNLQILSLRDNDL 162 (264)
T ss_pred chhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcccCChhhhh---hcceeEEeeccCch
Confidence 999999999888763 3554 676777788888888887766665554 66667777776665
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=6.5e-12 Score=90.89 Aligned_cols=110 Identities=29% Similarity=0.389 Sum_probs=43.8
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-cc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-TH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~ 111 (184)
+.++++|+|++|.++. +.. .-..+.+|+.|++++|.+..... +..++.|+.|++++|.++. +.+.+ ..
T Consensus 18 ~~~~~~L~L~~n~I~~---Ie~-L~~~l~~L~~L~Ls~N~I~~l~~------l~~L~~L~~L~L~~N~I~~-i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST---IEN-LGATLDKLEVLDLSNNQITKLEG------LPGLPRLKTLDLSNNRISS-ISEGLDKN 86 (175)
T ss_dssp ---------------------S---TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHHH
T ss_pred cccccccccccccccc---ccc-hhhhhcCCCEEECCCCCCccccC------ccChhhhhhcccCCCCCCc-cccchHHh
Confidence 3467899999999986 332 11357899999999999986532 7889999999999999994 43344 46
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+++|+.|++++|++.+.-....+..+++|+.|++.+|+++..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 899999999999997322223577899999999999999864
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=3.8e-13 Score=95.83 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=104.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~ 111 (184)
..+++.|++.+|++++ +|.++ +.+++|+.|+++.|.+. ..|.. |+.+|.|+.||+.+|++.. .+|..|-.
T Consensus 55 l~nlevln~~nnqie~---lp~~i-ssl~klr~lnvgmnrl~-~lprg----fgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEE---LPTSI-SSLPKLRILNVGMNRLN-ILPRG----FGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred hhhhhhhhcccchhhh---cChhh-hhchhhhheecchhhhh-cCccc----cCCCchhhhhhccccccccccCCcchhH
Confidence 5578899999999997 77775 88999999999999887 45655 9999999999999988864 35777777
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+..|+.|+++.|.+. -+|. .++.+++|+.|.+..|.+-..+...+. |+.|..+++.+|+++
T Consensus 126 m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll~lpkeig~---lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLLSLPKEIGD---LTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchhhCcHHHHH---HHHHHHHhcccceee
Confidence 888888999999887 7777 788999999999998888766544444 455555566777664
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.2e-10 Score=98.30 Aligned_cols=91 Identities=33% Similarity=0.536 Sum_probs=84.9
Q ss_pred CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485 62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141 (184)
Q Consensus 62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~ 141 (184)
.++.|++++|.+.+..|.. +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|. .++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 4788999999999999988 99999999999999999999999999999999999999999988987 899999999
Q ss_pred EEECCCCCCCccccCc
Q 038485 142 ELDIGGNKIDKFVVSK 157 (184)
Q Consensus 142 ~L~ls~N~l~~~~~~~ 157 (184)
.|++++|++++.+|..
T Consensus 494 ~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 494 ILNLNGNSLSGRVPAA 509 (623)
T ss_pred EEECcCCcccccCChH
Confidence 9999999999988753
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-11 Score=96.60 Aligned_cols=148 Identities=26% Similarity=0.318 Sum_probs=122.0
Q ss_pred CCCCCCc---eeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh
Q 038485 18 ATDCCQW---ERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL 85 (184)
Q Consensus 18 ~~~~c~~---~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~ 85 (184)
..+-|+- ..|.|... +...++++|..|+|.. +|+..|..+++|+.+|+++|.|+.+.|++ |
T Consensus 39 ~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F 111 (498)
T KOG4237|consen 39 APCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDA----F 111 (498)
T ss_pred CCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHh----h
Confidence 4444554 45778652 5678999999999998 99999999999999999999999999988 9
Q ss_pred cCCCCCcEEECCC-CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485 86 SRLNNLKMLNLSG-NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK 164 (184)
Q Consensus 86 ~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~ 164 (184)
.+++++..|.+.+ |+|+...-..|+++.+++.|.+.-|++. -++.+.+..+++++.|.+..|.+.... ...+..+.
T Consensus 112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~--~~tf~~l~ 188 (498)
T KOG4237|consen 112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSIC--KGTFQGLA 188 (498)
T ss_pred hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhc--cccccchh
Confidence 9999998888776 9999666678999999999999999987 666668999999999999999887532 35667777
Q ss_pred ceeeccccccc
Q 038485 165 NANLYKLAGFF 175 (184)
Q Consensus 165 ~L~~~~l~~~~ 175 (184)
+++-+.+..|.
T Consensus 189 ~i~tlhlA~np 199 (498)
T KOG4237|consen 189 AIKTLHLAQNP 199 (498)
T ss_pred ccchHhhhcCc
Confidence 77776666665
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.6e-10 Score=82.53 Aligned_cols=109 Identities=30% Similarity=0.430 Sum_probs=44.4
Q ss_pred CCCCCCCEEeCCCCcCCCcchhhhhhhhc-CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhh-c
Q 038485 58 TPFQQLESLDLTDNKIASCVENEGIERLS-RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKEL-D 135 (184)
Q Consensus 58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~-~ 135 (184)
.+...++.|++++|.++... . ++ .+.+|+.|++++|.++ . .+.+..++.|+.|++++|.++ .+.. .+ .
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~-----L~~~l~~L~~L~Ls~N~I~-~-l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-N-----LGATLDKLEVLDLSNNQIT-K-LEGLPGLPRLKTLDLSNNRIS-SISE-GLDK 85 (175)
T ss_dssp ---------------------S-------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHH
T ss_pred cccccccccccccccccccc-c-----hhhhhcCCCEEECCCCCCc-c-ccCccChhhhhhcccCCCCCC-cccc-chHH
Confidence 45567899999999998643 2 55 5789999999999998 3 346888999999999999998 6754 34 4
Q ss_pred CCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 136 SLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 136 ~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
.+++|++|++++|+|... .....+..+++|..+++.+|.++
T Consensus 86 ~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCccc
Confidence 689999999999999874 44567778899999999999886
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=3.5e-11 Score=103.68 Aligned_cols=130 Identities=25% Similarity=0.372 Sum_probs=88.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
.+.++.|.+.+|.++. --.+.+.++++|+.|++++|++....... +.++..|+.|++++|.++ .+|..+..+
T Consensus 358 ~~~Lq~LylanN~Ltd---~c~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTD---SCFPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred hHHHHHHHHhcCcccc---cchhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhh-hhhHHHHhh
Confidence 3456777777777765 33334567778888888888776544443 677777888888888877 677777777
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF 175 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~ 175 (184)
..|++|...+|.+. .+| .+..++.|+.+|++.|+++........ + .++|+++|++||.
T Consensus 430 ~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~-p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL-P-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCcee-ech--hhhhcCcceEEecccchhhhhhhhhhC-C-CcccceeeccCCc
Confidence 78888888777776 676 477777788888888877664322222 1 1556666666665
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.99 E-value=6.1e-11 Score=99.15 Aligned_cols=130 Identities=27% Similarity=0.348 Sum_probs=64.2
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
..|+|++|+|.. +|.+.|.++..|-+||+|+|.+....|. +..+..|++|.+++|.+...-..++..+.+|+
T Consensus 129 iVLNLS~N~Iet---IPn~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 129 IVLNLSYNNIET---IPNSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred EEEEcccCcccc---CCchHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 344444444443 4445555555555555555555433222 45555555555555554322222333334444
Q ss_pred EEeCCCcccc-CcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 117 SLNLFWNRLE-GSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 117 ~L~l~~n~~~-~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
.|.+++.+-+ ..+|. .+..+.+|+.+|+|+|.+... |.. +-.+++|..++|++|+|+-
T Consensus 201 vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~v-Pec--ly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIV-PEC--LYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred hhhcccccchhhcCCC-chhhhhhhhhccccccCCCcc-hHH--HhhhhhhheeccCcCceee
Confidence 4444443221 23444 455566667777777776643 322 2245555666666666653
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=9.5e-10 Score=86.58 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=8.4
Q ss_pred CCceEEEecCCCCCC
Q 038485 33 MSRVIALDLSDTYGG 47 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~ 47 (184)
..+++.|++++|.+.
T Consensus 80 ~~~L~~L~l~~~~~~ 94 (319)
T cd00116 80 GCGLQELDLSDNALG 94 (319)
T ss_pred cCceeEEEccCCCCC
Confidence 345566666665554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.94 E-value=3.3e-11 Score=100.73 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLT 110 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~ 110 (184)
...+++.|+|++|.+++ +.... ....+|++|++|.|+++. .|+. +.+++.|+.|++.+|.+... +|++++
T Consensus 243 ~l~~LrrLNLS~N~ite---L~~~~-~~W~~lEtLNlSrNQLt~-LP~a----vcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITE---LNMTE-GEWENLETLNLSRNQLTV-LPDA----VCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred hhhhhheeccCcCceee---eeccH-HHHhhhhhhccccchhcc-chHH----HhhhHHHHHHHhccCcccccCCccchh
Confidence 35677888888888876 44433 456778888888888874 5555 77888888888888887643 588888
Q ss_pred cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF 175 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~ 175 (184)
.+..|+.+..++|.+. ..|. .+.+|..|+.|.+++|++...|...+. |..|+.++++.|.
T Consensus 314 KL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhHHHHhhccccc-cCch-hhhhhHHHHHhcccccceeechhhhhh---cCCcceeeccCCc
Confidence 8888888888888886 6776 788999999999999998877655666 4445666666654
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.3e-09 Score=85.74 Aligned_cols=143 Identities=22% Similarity=0.110 Sum_probs=62.3
Q ss_pred CceEEEecCCCCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HHh
Q 038485 34 SRVIALDLSDTYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSS 108 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~~ 108 (184)
.++++|++++|.++.... .-...+..+.+|+.|++++|.+.+........++..+++|+.+++++|.+.+.. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 345555555555442000 001122334455555555555543222221222344455566666655554322 223
Q ss_pred hccCCCCcEEeCCCccccCcccHhhhc-----CCCCCcEEECCCCCCCc--cccCccccccccceeecccccccee
Q 038485 109 LTHLSSLRSLNLFWNRLEGSIDVKELD-----SLRDLEELDIGGNKIDK--FVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 109 ~~~l~~L~~L~l~~n~~~~~l~~~~~~-----~~~~L~~L~ls~N~l~~--~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+..+++|++|++++|.+++.-.. .+. ..+.|+++++++|.+++ ...-...+..+++|..+++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHH-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 33445566666666555421111 111 12456666666665542 1111122334455566666666654
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.92 E-value=3.6e-10 Score=90.04 Aligned_cols=117 Identities=27% Similarity=0.363 Sum_probs=76.9
Q ss_pred eEEEecCCCCCCc--------------------cccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEE
Q 038485 36 VIALDLSDTYGGE--------------------YWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLN 95 (184)
Q Consensus 36 l~~L~l~~n~l~~--------------------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~ 95 (184)
++.++++.|++.+ ...+++..+..+++|..|++++|.+.. .|.. ++.+..|+.++
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e----~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEE----MGSLVRLQTLN 464 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchh----hhhhhhhheec
Confidence 6778888888764 111233345678889999999988774 4555 77888899999
Q ss_pred CCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccc
Q 038485 96 LSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159 (184)
Q Consensus 96 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~ 159 (184)
++.|+|. .+|+.+..+..++.+..++|++. .++...+..+..|.+||+..|.+...||..+.
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgn 526 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGN 526 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhhCChhhcc
Confidence 9999887 56666555555555555555654 55554466666666666666666655554444
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=2.1e-10 Score=88.49 Aligned_cols=132 Identities=24% Similarity=0.355 Sum_probs=92.0
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
+.++++||++|.+.. ++.++ .-.+.++.|++|.|.+..... +..+++|+.||+++|.++ .+...-..+.
T Consensus 284 q~LtelDLS~N~I~~---iDESv-KL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ---IDESV-KLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred hhhhhccccccchhh---hhhhh-hhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhhhc
Confidence 457888899988886 55443 567888888998888864322 678888888899888877 4444445667
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI 180 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~ 180 (184)
+.++|.+++|.+. .+. .++.+.+|..||+++|+|..... ......|.-|+.+.+.+|.+...+
T Consensus 353 NIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred CEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence 7788888888876 553 57788888888888888765422 122234555567777777776543
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.89 E-value=2.2e-11 Score=96.75 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=79.4
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
++..+++.+|.+.+ +++.... ++.|+.+|.-.|-+.. .|+. ++.+.+|..|++.+|.+. ..| .|.++..
T Consensus 161 ~l~~l~~~~n~l~~---l~~~~i~-m~~L~~ld~~~N~L~t-lP~~----lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~ 229 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKA---LPENHIA-MKRLKHLDCNSNLLET-LPPE----LGGLESLELLYLRRNKIR-FLP-EFPGCSL 229 (565)
T ss_pred HHHHhhccccchhh---CCHHHHH-HHHHHhcccchhhhhc-CChh----hcchhhhHHHHhhhcccc-cCC-CCCccHH
Confidence 45566666666665 5544433 6777777777776654 3444 777888888888888776 445 5666666
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
|..+.++.|.+. .+|.+-...+.++.+||++.|++...|.... -||+|+.+|++.|.|+.
T Consensus 230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c---lLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---LLRSLERLDLSNNDISS 289 (565)
T ss_pred HHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH---HhhhhhhhcccCCcccc
Confidence 666666666665 5555334456666666666666665433222 25556666666666653
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2e-09 Score=64.54 Aligned_cols=60 Identities=35% Similarity=0.538 Sum_probs=44.9
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF 101 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~ 101 (184)
++++|++++|.+.. ++...|..+++|++|++++|.+....+.. |..+++|+++++++|++
T Consensus 2 ~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESE---ECTTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence 56778888887776 77777778888888888888877666655 77777777777777753
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.5e-09 Score=64.99 Aligned_cols=58 Identities=33% Similarity=0.456 Sum_probs=25.3
Q ss_pred CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485 91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149 (184)
Q Consensus 91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~ 149 (184)
|+.+++++|.++...+..|..+++|+++++++|.++ .++.+.|..+++|+++++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444222333444444444444444444 3333344444444444444443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=1.4e-09 Score=94.02 Aligned_cols=129 Identities=24% Similarity=0.318 Sum_probs=105.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|+|++|+++. +|...+.++..|+.|++|+|.++. .|+. +..+..|++|....|.+. ..| .+..+
T Consensus 382 ~~hLKVLhLsyNrL~~---fpas~~~kle~LeeL~LSGNkL~~-Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNS---FPASKLRKLEELEELNLSGNKLTT-LPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred ccceeeeeeccccccc---CCHHHHhchHHhHHHhcccchhhh-hhHH----HHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 5689999999999998 999999999999999999999984 5666 889999999999999998 678 78899
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
+.|+.+|++-|.++ ..-.......++|++||+++|.-.. .+..+++.++++...++..+
T Consensus 452 ~qL~~lDlS~N~L~-~~~l~~~~p~p~LkyLdlSGN~~l~--~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLS-EVTLPEALPSPNLKYLDLSGNTRLV--FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcceEEecccchhh-hhhhhhhCCCcccceeeccCCcccc--cchhhhHHhhhhhheecccC
Confidence 99999999999997 4322122223799999999998533 45577777777776666555
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=5.8e-08 Score=84.72 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=61.2
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
..++.|++++|.+.. ++...+ .+|++|++++|.++. .|.. + ..+|+.|++++|.+. .+|..+. .
T Consensus 199 ~~L~~L~Ls~N~Lts---LP~~l~---~nL~~L~Ls~N~Lts-LP~~----l--~~~L~~L~Ls~N~L~-~LP~~l~--s 262 (754)
T PRK15370 199 EQITTLILDNNELKS---LPENLQ---GNIKTLYANSNQLTS-IPAT----L--PDTIQEMELSINRIT-ELPERLP--S 262 (754)
T ss_pred cCCcEEEecCCCCCc---CChhhc---cCCCEEECCCCcccc-CChh----h--hccccEEECcCCccC-cCChhHh--C
Confidence 456677777777665 554332 467777777777764 3332 2 235677777777766 4555442 4
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
+|+.|++++|.++ .+|. .+. ++|+.|++++|++++.+
T Consensus 263 ~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccCc
Confidence 6777777777776 5654 232 46777777777776543
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=1.2e-07 Score=82.70 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=22.9
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC 76 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 76 (184)
..++.|++.+|.++. ++. ..++|++|++++|+++..
T Consensus 222 ~~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 222 AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSL 257 (788)
T ss_pred cCCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcc
Confidence 356677777777665 432 246777777777777643
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=2.2e-07 Score=85.08 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=68.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+.++++|++.++.+.. ++.. +..+++|+.++++++......|. +..+++|+.|++.+|.....+|..+..+
T Consensus 610 ~~~L~~L~L~~s~l~~---L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK---LWDG-VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred ccCCcEEECcCccccc---cccc-cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 3456677777776665 3333 25677777777777654444554 5677777777777766555667777777
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCC
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l 150 (184)
.+|+.|++++|...+.+|. .+ .+++|+.|++++|..
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCC
Confidence 7777777777643335664 22 566666666666543
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.57 E-value=5.8e-08 Score=84.70 Aligned_cols=78 Identities=24% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeec
Q 038485 90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLY 169 (184)
Q Consensus 90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~ 169 (184)
.|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|. . ...|+.|++++|+++.. | ..+..+.+|..+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt~L-P--~sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLTRL-P--ESLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccccc-C--hHHhhccCCCeE
Confidence 3455555555554 23321 134555666666655 4443 1 23455566666666543 2 123356667777
Q ss_pred cccccceeeE
Q 038485 170 KLAGFFAIWF 179 (184)
Q Consensus 170 ~l~~~~~~~~ 179 (184)
++++|.+++.
T Consensus 451 dLs~N~Ls~~ 460 (788)
T PRK15387 451 NLEGNPLSER 460 (788)
T ss_pred ECCCCCCCch
Confidence 7788877653
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.56 E-value=5.3e-07 Score=78.81 Aligned_cols=121 Identities=21% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+.++|+++++.++. +|... .+.++.|++++|.++.. |.. + .++|+.|++++|.+. .+|..+.
T Consensus 177 ~~~~~~L~L~~~~Lts---LP~~I---p~~L~~L~Ls~N~LtsL-P~~----l--~~nL~~L~Ls~N~Lt-sLP~~l~-- 240 (754)
T PRK15370 177 KNNKTELRLKILGLTT---IPACI---PEQITTLILDNNELKSL-PEN----L--QGNIKTLYANSNQLT-SIPATLP-- 240 (754)
T ss_pred ccCceEEEeCCCCcCc---CCccc---ccCCcEEEecCCCCCcC-Chh----h--ccCCCEEECCCCccc-cCChhhh--
Confidence 3567899999999987 66543 25799999999999864 443 3 258999999999998 5676543
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
.+|+.|++++|.+. .+|. .+. .+|+.|++++|++...+... . .+|..+++++|.++.
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~LP~~l--~---~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISCLPENL--P---EELRYLSVYDNSIRT 297 (754)
T ss_pred ccccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCcccccc--C---CCCcEEECCCCcccc
Confidence 47999999999998 8886 443 58999999999999754322 1 245555666666653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=7e-09 Score=85.84 Aligned_cols=128 Identities=31% Similarity=0.346 Sum_probs=88.0
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
....++.++|+.|++.. ++... . ..-|+.|.+++|++.. .|.. ++.+++|..++.+.|.+. .+|..++.
T Consensus 119 ~L~~lt~l~ls~NqlS~---lp~~l-C-~lpLkvli~sNNkl~~-lp~~----ig~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSH---LPDGL-C-DLPLKVLIVSNNKLTS-LPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred hhhHHHHhhhccchhhc---CChhh-h-cCcceeEEEecCcccc-CCcc----cccchhHHHhhhhhhhhh-hchHHhhh
Confidence 35677888888888885 66553 2 3447888888888874 4444 677778888888888877 66777777
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
+.+|+.+.+..|.+. .+|. .+..++ |..||+++|++...+ ..|..+++|.++-|..|.+
T Consensus 188 l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lDfScNkis~iP---v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLDFSCNKISYLP---VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeeecccCceeecc---hhhhhhhhheeeeeccCCC
Confidence 777777777777776 6665 455333 677777777777543 3445666666666666654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2.2e-08 Score=77.51 Aligned_cols=109 Identities=34% Similarity=0.451 Sum_probs=89.1
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
.+.++.|++++|++.. +.. +..+.+|+.||+|+|.++....= -.++-+.+.|.++.|.+. ..++++.+
T Consensus 306 ~Pkir~L~lS~N~i~~---v~n--La~L~~L~~LDLS~N~Ls~~~Gw-----h~KLGNIKtL~La~N~iE--~LSGL~KL 373 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRT---VQN--LAELPQLQLLDLSGNLLAECVGW-----HLKLGNIKTLKLAQNKIE--TLSGLRKL 373 (490)
T ss_pred ccceeEEeccccceee---ehh--hhhcccceEeecccchhHhhhhh-----HhhhcCEeeeehhhhhHh--hhhhhHhh
Confidence 5789999999999985 333 57789999999999999865332 246778899999999986 35678888
Q ss_pred CCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccc
Q 038485 113 SSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
.+|..||+++|+|. .+. ...++++++|+++.+.+|++.+.+
T Consensus 374 YSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999999999997 443 235889999999999999998753
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=5.9e-08 Score=77.36 Aligned_cols=94 Identities=23% Similarity=0.366 Sum_probs=70.4
Q ss_pred cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485 53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK 132 (184)
Q Consensus 53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~ 132 (184)
|...|..+++|+.+++++|.++...+.. |.++.++++|++.+|.+.......|.++..|++|++.+|+|+ .+..+
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~ 340 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPG 340 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecc
Confidence 3344777888888888888888777666 778888888888888887555667777888888888888887 44444
Q ss_pred hhcCCCCCcEEECCCCCCC
Q 038485 133 ELDSLRDLEELDIGGNKID 151 (184)
Q Consensus 133 ~~~~~~~L~~L~ls~N~l~ 151 (184)
.|....+|..|++-.|++.
T Consensus 341 aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccceeeeeehccCccc
Confidence 7777888888887777653
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=1.6e-06 Score=79.65 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+..++.|++.++.+.. +|.. | ...+|+.|+++++.+... +.. +..+++|+.++++++.....+| .+..+
T Consensus 588 p~~Lr~L~~~~~~l~~---lP~~-f-~~~~L~~L~L~~s~l~~L-~~~----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC---MPSN-F-RPENLVKLQMQGSKLEKL-WDG----VHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred CcccEEEEecCCCCCC---CCCc-C-CccCCcEEECcCcccccc-ccc----cccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 3457777777777765 5543 2 468899999999998754 444 6789999999999876443555 47788
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
++|+.|++++|.....+|. .++.+++|+.|++++|.--+..|... .+++|..++++++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc 714 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGC 714 (1153)
T ss_pred CcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCC
Confidence 9999999999865458887 79999999999999865333344332 2444444444443
No 32
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.31 E-value=1.3e-06 Score=64.00 Aligned_cols=127 Identities=24% Similarity=0.219 Sum_probs=85.1
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
+-+++++.+..+..... .-.-..+...+|+++|.+.... . |..++.|.+|.+.+|+|+...|.--..+++
T Consensus 20 ~e~e~~LR~lkip~ien----lg~~~d~~d~iDLtdNdl~~l~-~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~ 89 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN----LGATLDQFDAIDLTDNDLRKLD-N-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPN 89 (233)
T ss_pred cccccccccccccchhh----ccccccccceecccccchhhcc-c-----CCCccccceEEecCCcceeeccchhhhccc
Confidence 34677888887764211 1133467778899999886432 2 788889999999999998666655556688
Q ss_pred CcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccc
Q 038485 115 LRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLA 172 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~ 172 (184)
|..|.+.+|.+. ++. ...+..+++|+.|.+-+|+++...-= ...+-.+.+|..+|..
T Consensus 90 l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 90 LKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 999999999887 332 22366788899999989988764321 1223344444544433
No 33
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=7e-09 Score=88.11 Aligned_cols=128 Identities=23% Similarity=0.231 Sum_probs=91.8
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
.+...+.++|.+.. ++ ..+.-++.++.|+++.|++++.. . +..+++|+.||+++|.+. .+|..-..-..
T Consensus 165 ~L~~a~fsyN~L~~---mD-~SLqll~ale~LnLshNk~~~v~--~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL---MD-ESLQLLPALESLNLSHNKFTKVD--N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHHh---HH-HHHHHHHHhhhhccchhhhhhhH--H----HHhcccccccccccchhc-cccccchhhhh
Confidence 35566677777663 33 33466788999999999988654 2 788999999999999987 44432111134
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
|+.|.+++|.++ ++. .+.++.+|+.||+++|-+.+. .....+-.|..|..+.|-||.+.
T Consensus 234 L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCccc
Confidence 888999999987 664 588889999999999988763 22333445677778888888764
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=4e-07 Score=80.83 Aligned_cols=108 Identities=26% Similarity=0.259 Sum_probs=85.5
Q ss_pred CCceEEEecCCCC--CCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc
Q 038485 33 MSRVIALDLSDTY--GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110 (184)
Q Consensus 33 ~~~l~~L~l~~n~--l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 110 (184)
.+.+++|-+.+|. +.. ++...|..++.|+.||+++|.--+..|.. ++.+-+|++|++++..+. .+|..++
T Consensus 544 ~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~ 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLG 615 (889)
T ss_pred CCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHH
Confidence 3468888888886 343 55666888999999999987776778887 888999999999999988 8899999
Q ss_pred cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~ 149 (184)
.+.+|.+|++..+.....++. ....+++|++|.+..-.
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 999999999988765434443 66678999999876654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.28 E-value=4.3e-07 Score=73.91 Aligned_cols=128 Identities=30% Similarity=0.414 Sum_probs=78.7
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-----
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL----- 109 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~----- 109 (184)
++++|++++|.+.. ++.. ...+++|+.|++++|++....+. ...++.|..+++++|.+. .+|...
T Consensus 141 nL~~L~l~~N~i~~---l~~~-~~~l~~L~~L~l~~N~l~~l~~~-----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIES---LPSP-LRNLPNLKNLDLSFNDLSDLPKL-----LSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210 (394)
T ss_pred hcccccccccchhh---hhhh-hhccccccccccCCchhhhhhhh-----hhhhhhhhheeccCCccc-cCchhhhhhhh
Confidence 78888888888876 4322 36778888888888888754432 235666666677776666 344433
Q ss_pred ------------------ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485 110 ------------------THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL 171 (184)
Q Consensus 110 ------------------~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l 171 (184)
..+..+..+.+.+|++. .++. .++.+++++.+++++|.++.... +..+.++..+++
T Consensus 211 L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~-~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~ 284 (394)
T COG4886 211 LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE-SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDL 284 (394)
T ss_pred hhhhhhcCCcceecchhhhhcccccccccCCceee-eccc-hhccccccceecccccccccccc----ccccCccCEEec
Confidence 33334444444444443 2222 46666677777777777776433 445666677777
Q ss_pred cccceee
Q 038485 172 AGFFAIW 178 (184)
Q Consensus 172 ~~~~~~~ 178 (184)
+++.+++
T Consensus 285 s~n~~~~ 291 (394)
T COG4886 285 SGNSLSN 291 (394)
T ss_pred cCccccc
Confidence 7766654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.3e-07 Score=76.14 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHh-hcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~ 111 (184)
..+++.|||++|-+.. |.........+++|+.|+++.|.+........ -..+++|+.|.++.|.+++..... ...
T Consensus 145 ~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred CCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4567778888776654 22223444667778888888777753322210 124567777777777777654433 335
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
++++..|++..|... .........+..|+.|++++|++.+++
T Consensus 221 fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 221 FPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred CCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccc
Confidence 567777777766422 111112334556667777777666543
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=1.6e-06 Score=70.57 Aligned_cols=104 Identities=35% Similarity=0.494 Sum_probs=68.4
Q ss_pred CceEEEecCCCCCCccccccCccCCCCC-CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQ-QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++.|++.+|.+.. +++.. ..+. +|+.|++++|.+.... .. +..++.|+.|+++.|.+. ..|...+..
T Consensus 116 ~~l~~L~l~~n~i~~---i~~~~-~~~~~nL~~L~l~~N~i~~l~-~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITD---IPPLI-GLLKSNLKELDLSDNKIESLP-SP----LRNLPNLKNLDLSFNDLS-DLPKLLSNL 185 (394)
T ss_pred cceeEEecCCccccc---Ccccc-ccchhhcccccccccchhhhh-hh----hhccccccccccCCchhh-hhhhhhhhh
Confidence 346777777777775 44432 3342 7777788877776432 22 567777788888887777 455555566
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~ 149 (184)
+.|..+++++|.++ .+|. .......|+.+.++.|+
T Consensus 186 ~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 186 SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCc
Confidence 77777778777777 6665 44455557777777774
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=3e-06 Score=47.12 Aligned_cols=38 Identities=32% Similarity=0.518 Sum_probs=24.8
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+|++|++++|+++ .++. .+..+++|+.|++++|++++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 5667777777776 5664 577777777777777777653
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.17 E-value=3.9e-07 Score=75.79 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=92.6
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
-+..|.+++|.++. ++... +....|..||.+.|.+.. .|.. +..+.+|..+.+.+|.+. .+|+.+.. -.
T Consensus 144 pLkvli~sNNkl~~---lp~~i-g~~~tl~~ld~s~nei~s-lpsq----l~~l~slr~l~vrRn~l~-~lp~El~~-Lp 212 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTS---LPEEI-GLLPTLAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCS-LP 212 (722)
T ss_pred cceeEEEecCcccc---CCccc-ccchhHHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence 47889999999987 77776 478899999999999985 4444 889999999999999998 77888884 45
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
|..||++.|+++ .+|. .|.+|+.|++|-|.+|++...
T Consensus 213 Li~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeeeecccCcee-ecch-hhhhhhhheeeeeccCCCCCC
Confidence 999999999998 9998 899999999999999999864
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=5e-07 Score=62.48 Aligned_cols=111 Identities=23% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
...++.++|++|.+.. ++...-..++.++.+++++|.++. .|.+ +..++.|+.++++.|.+. ..|..+..+
T Consensus 52 ~~el~~i~ls~N~fk~---fp~kft~kf~t~t~lNl~~neisd-vPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK---FPKKFTIKFPTATTLNLANNEISD-VPEE----LAAMPALRSLNLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred CceEEEEecccchhhh---CCHHHhhccchhhhhhcchhhhhh-chHH----HhhhHHhhhcccccCccc-cchHHHHHH
Confidence 3456777788887776 666555566677778888887764 4555 777778888888887777 567766667
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
.++-.|+..+|.+. .++-+ +-.....-..+++.+++.+.-
T Consensus 123 ~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 123 IKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred HhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccC
Confidence 77777777777776 67663 222222333344556665543
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=9.8e-07 Score=61.05 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCC
Q 038485 61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140 (184)
Q Consensus 61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L 140 (184)
..|+..++++|.+.+..+.- -.+++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|. .+..+.++
T Consensus 53 ~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLIKL 125 (177)
T ss_pred ceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHHhH
Confidence 44555556666555332221 123445555556666555 44555555555666666655554 4443 44445555
Q ss_pred cEEECCCCCCC
Q 038485 141 EELDIGGNKID 151 (184)
Q Consensus 141 ~~L~ls~N~l~ 151 (184)
..|+.-.|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555555444
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.4e-06 Score=70.34 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCCCceeEEecC-CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485 20 DCCQWERVECSN-TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98 (184)
Q Consensus 20 ~~c~~~gv~c~~-~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~ 98 (184)
-+.+|..|.-.. +.++++.|+++.|.+.-.+ ....-..+.+|+.|.++.|.++...-.. -...+|+|+.|++..
T Consensus 157 L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 157 LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQW---ILLTFPSLEVLYLEA 231 (505)
T ss_pred hHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHH---HHHhCCcHHHhhhhc
Confidence 344566665432 4678888888888776411 1111134566777777777665322111 133455555555555
Q ss_pred C
Q 038485 99 N 99 (184)
Q Consensus 99 n 99 (184)
|
T Consensus 232 N 232 (505)
T KOG3207|consen 232 N 232 (505)
T ss_pred c
Confidence 5
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=1e-05 Score=72.01 Aligned_cols=111 Identities=23% Similarity=0.231 Sum_probs=87.1
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc--CCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK--IASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~--l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
..++.+.+-+|.+.. .+.. ...+.|++|-+..|. +......- |..++.|..||+++|.--+.+|+.++.
T Consensus 523 ~~~rr~s~~~~~~~~---~~~~--~~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH---IAGS--SENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhh---ccCC--CCCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhh
Confidence 355666777776654 3333 344579899888885 44333333 778999999999998877799999999
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
+-+|++|+++++.++ .+|. .++++..|.+|++..+.....++
T Consensus 594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhhhhcccccCCCcc-ccch-HHHHHHhhheecccccccccccc
Confidence 999999999999998 8998 89999999999999877554444
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.3e-05 Score=44.50 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=20.7
Q ss_pred CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCcccc
Q 038485 90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLE 126 (184)
Q Consensus 90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 126 (184)
+|++|++++|.++ .+|+.+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666666 34445666666666666666665
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=2.6e-06 Score=69.99 Aligned_cols=106 Identities=42% Similarity=0.553 Sum_probs=77.8
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
...+..|++.+|.+.. +... +..+.+|++|++++|.|+...+ +..++.|+.|++.+|.+. ..+.+..+
T Consensus 94 ~~~l~~l~l~~n~i~~---i~~~-l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~--~~~~~~~l 161 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK---IENL-LSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS--DISGLESL 161 (414)
T ss_pred ccceeeeeccccchhh---cccc-hhhhhcchheeccccccccccc------hhhccchhhheeccCcch--hccCCccc
Confidence 4677888888888876 3321 3668888888888888887655 567777888888888886 24456667
Q ss_pred CCCcEEeCCCccccCcccHhh-hcCCCCCcEEECCCCCCCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKE-LDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~-~~~~~~L~~L~ls~N~l~~ 152 (184)
..|+.+++++|.++ .++. . ...+.+++.+++..|.+..
T Consensus 162 ~~L~~l~l~~n~i~-~ie~-~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIV-DIEN-DELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhhcccCCcchhh-hhhh-hhhhhccchHHHhccCCchhc
Confidence 88888888888887 5553 2 4677778888888887654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=7.8e-06 Score=67.20 Aligned_cols=107 Identities=35% Similarity=0.421 Sum_probs=58.7
Q ss_pred CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485 58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137 (184)
Q Consensus 58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~ 137 (184)
..+.+++.+++.+|.+.+.... +..+++|+.|++++|.|+. ...+..+..|+.|++++|.++ .+. .+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~-~~~--~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLIS-DIS--GLESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccc-----hhhhhcchheecccccccc--ccchhhccchhhheeccCcch-hcc--CCccc
Confidence 4556666666666666654331 3456666666666666652 233444555666666666665 443 35556
Q ss_pred CCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
+.|+.+++++|.+....+. . ...+.++..+.+.+|.+
T Consensus 162 ~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCch
Confidence 6666666666666653331 1 12333444444444443
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=9e-05 Score=54.50 Aligned_cols=103 Identities=28% Similarity=0.262 Sum_probs=78.8
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh-HHhhccCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHLS 113 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~ 113 (184)
....+||+.|.+.. ...|..++.|++|.+++|.|+...|.- -..++.|..|.+.+|.+.... ...+..++
T Consensus 43 ~~d~iDLtdNdl~~-----l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-----LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchhh-----cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhhhhhcchhccCC
Confidence 45678999998875 334677899999999999999888774 345788999999999987322 34577889
Q ss_pred CCcEEeCCCccccCcccH---hhhcCCCCCcEEECCC
Q 038485 114 SLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGG 147 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~ 147 (184)
+|+.|.+-+|.++. ... =.+..+++|+.||...
T Consensus 114 ~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 99999999999872 211 1366788999998653
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=2.1e-05 Score=62.06 Aligned_cols=94 Identities=23% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCceEEEecCCCCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch----hHH
Q 038485 33 MSRVIALDLSDTYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS----ILS 107 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~ 107 (184)
...++++....|.+...+. .-...|+..+.|+.+.+..|.|....-..+..++...++|+.|++..|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3455555555555543100 11122333344555555444443221111122244445555555555544421 122
Q ss_pred hhccCCCCcEEeCCCcccc
Q 038485 108 SLTHLSSLRSLNLFWNRLE 126 (184)
Q Consensus 108 ~~~~l~~L~~L~l~~n~~~ 126 (184)
.+..++.|+.+++++|.++
T Consensus 236 aL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred Hhcccchheeecccccccc
Confidence 2333444555555555443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=5.2e-06 Score=71.18 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=77.8
Q ss_pred CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485 62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141 (184)
Q Consensus 62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~ 141 (184)
.|.+.+.+.|.+.. ...+ +.-++.++.|+|++|.++. ...+..++.|++||+++|.+. .+|.-.... ..|.
T Consensus 165 ~L~~a~fsyN~L~~-mD~S----Lqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDES----LQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQ 235 (1096)
T ss_pred hHhhhhcchhhHHh-HHHH----HHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhh-hhhe
Confidence 46666777777763 2333 6778899999999999873 347888999999999999997 777412223 3499
Q ss_pred EEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485 142 ELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI 180 (184)
Q Consensus 142 ~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~ 180 (184)
.|.+++|.++.. .-...|++|..+|++-|.|.++.
T Consensus 236 ~L~lrnN~l~tL----~gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 236 LLNLRNNALTTL----RGIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred eeeecccHHHhh----hhHHhhhhhhccchhHhhhhcch
Confidence 999999988753 22345788888888888887664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=3.8e-05 Score=59.73 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=53.1
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH-Hhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~ 111 (184)
..+++++||.+|.+.. |.-...+...+++|+.|+++.|++...+... -....+|+.+-+.+..+.+... ..+..
T Consensus 70 ~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhhc
Confidence 3456777888887764 3333455577788888888888776544331 1345567777777776665433 23345
Q ss_pred CCCCcEEeCCCc
Q 038485 112 LSSLRSLNLFWN 123 (184)
Q Consensus 112 l~~L~~L~l~~n 123 (184)
++.++.+.++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 566666666666
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.00012 Score=63.73 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=38.6
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC
Q 038485 59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR 138 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~ 138 (184)
-+|.|+.|.+++-.+....-.. .+..+|+|..||+++.+++.. .+++.+.+|+.|.+.+=.+........+-.++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~---lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQ---LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hCcccceEEecCceecchhHHH---HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 3455555555554443221111 144555555555555555422 44445555555555444443212222344455
Q ss_pred CCcEEECCCC
Q 038485 139 DLEELDIGGN 148 (184)
Q Consensus 139 ~L~~L~ls~N 148 (184)
+|++||+|..
T Consensus 221 ~L~vLDIS~~ 230 (699)
T KOG3665|consen 221 KLRVLDISRD 230 (699)
T ss_pred CCCeeecccc
Confidence 5555555543
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.38 E-value=8e-05 Score=58.83 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred CceEEEecCCCCCCcccccc-CccCCCCCCCCEEeCCCCcCC
Q 038485 34 SRVIALDLSDTYGGEYWYLN-ASLFTPFQQLESLDLTDNKIA 74 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~-~~~~~~l~~L~~L~ls~n~l~ 74 (184)
++++.|+|+.|-+...+... ...+..+..|+.|.+.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 37778888887775411100 111223445555555555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00079 Score=58.83 Aligned_cols=113 Identities=25% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~ 111 (184)
.+.+++|.+.+-.+...+ ......++++|..||+|+.+++... . ++.+++|+.|.+.+=.+.. .....+-.
T Consensus 147 LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl~--G----IS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNLS--G----ISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred CcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCcH--H----HhccccHHHHhccCCCCCchhhHHHHhc
Confidence 577888888887665311 2234578999999999999998652 2 7899999998888776653 33455668
Q ss_pred CCCCcEEeCCCccccCcccH------hhhcCCCCCcEEECCCCCCCccc
Q 038485 112 LSSLRSLNLFWNRLEGSIDV------KELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~------~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
+.+|+.||+|..... ..+. +.-..++.|+.||.|++.+.+..
T Consensus 219 L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 999999999987654 2221 12335889999999998877643
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=2.6e-05 Score=60.12 Aligned_cols=101 Identities=33% Similarity=0.323 Sum_probs=74.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh-HHhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~ 111 (184)
...+..|+.-|+++.. +. +-..|+.|+.|.++-|.|+...| +...+.|++|+|..|.|.+.. ..-+.+
T Consensus 18 l~~vkKLNcwg~~L~D---Is--ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---IS--ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccH---HH--HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 4567788888888875 32 23678889999999999987665 778888999999999887433 234668
Q ss_pred CCCCcEEeCCCccccCcccH----hhhcCCCCCcEEE
Q 038485 112 LSSLRSLNLFWNRLEGSIDV----KELDSLRDLEELD 144 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~----~~~~~~~~L~~L~ 144 (184)
+++|+.|.+..|...|.-+. ..+..+++|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88999999988887754332 2355677777775
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00028 Score=53.69 Aligned_cols=86 Identities=24% Similarity=0.386 Sum_probs=47.8
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC--CCCchhHHhhccCCCCcEEeCCCccccC--cccHhhh
Q 038485 59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN--SFNNSILSSLTHLSSLRSLNLFWNRLEG--SIDVKEL 134 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~l~~~~~ 134 (184)
.+..|+.+.+.+..++.... +..+++|+.|.++.| ++++.++-....+++|+++.+++|++.. .++ .+
T Consensus 41 ~~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL 112 (260)
T ss_pred cccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence 34445555555554442221 556667777777777 4444343334445777777777776641 222 24
Q ss_pred cCCCCCcEEECCCCCCCc
Q 038485 135 DSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 135 ~~~~~L~~L~ls~N~l~~ 152 (184)
..+.+|..|++..+...+
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 455566677777666555
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.87 E-value=0.0026 Score=49.20 Aligned_cols=119 Identities=22% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-------------ccCCCCcEEeCCCc
Q 038485 57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-------------THLSSLRSLNLFWN 123 (184)
Q Consensus 57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-------------~~l~~L~~L~l~~n 123 (184)
+..+++|+..++|+|.+....|+.+.+-+++-+.|..|.+++|.+.......+ ..-+.|+.+....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34567777777777777777776666666677777777777777652211111 22456667766666
Q ss_pred cccCcccHh----hhcCCCCCcEEECCCCCCCccccC---ccccccccceeeccccccce
Q 038485 124 RLEGSIDVK----ELDSLRDLEELDIGGNKIDKFVVS---KGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 124 ~~~~~l~~~----~~~~~~~L~~L~ls~N~l~~~~~~---~~~~~~l~~L~~~~l~~~~~ 176 (184)
++. ..+.. .+..=..|..+.+..|.|.-.... .--+...++|.+++++-|-+
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 664 22221 111123455566655555421000 01122345566666665544
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00095 Score=52.16 Aligned_cols=126 Identities=20% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCCCceeEEecC-CCCceEEEecCCCCCCc-cccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECC
Q 038485 20 DCCQWERVECSN-TMSRVIALDLSDTYGGE-YWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLS 97 (184)
Q Consensus 20 ~~c~~~gv~c~~-~~~~l~~L~l~~n~l~~-~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~ 97 (184)
-...|..|.|.- .+++++.|+++.|++.. ++.+| ....+|+.+-+.+..+....-.+. +..+|.++.++++
T Consensus 82 ~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~---l~~lP~vtelHmS 154 (418)
T KOG2982|consen 82 LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSS---LDDLPKVTELHMS 154 (418)
T ss_pred hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhh---hhcchhhhhhhhc
Confidence 445588777642 48899999999999875 11222 234556666555555543332221 3334444444444
Q ss_pred CC-----------------------------------------------------CCCch-hHHhhccCCCCcEEeCCCc
Q 038485 98 GN-----------------------------------------------------SFNNS-ILSSLTHLSSLRSLNLFWN 123 (184)
Q Consensus 98 ~n-----------------------------------------------------~~~~~-~p~~~~~l~~L~~L~l~~n 123 (184)
.| .+... .-+....++++..|.++.+
T Consensus 155 ~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~ 234 (418)
T KOG2982|consen 155 DNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN 234 (418)
T ss_pred cchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc
Confidence 44 22110 1122333455556666666
Q ss_pred cccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 124 RLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 124 ~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
++.+.-..+.+..+++|+.|++++|++.+
T Consensus 235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 235 NIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66544333457778888888888888765
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0013 Score=50.19 Aligned_cols=87 Identities=22% Similarity=0.369 Sum_probs=59.4
Q ss_pred CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCc--cccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485 87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWN--RLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK 164 (184)
Q Consensus 87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~ 164 (184)
.+..|+.+...+.+++. -..+..+++|+.|.++.| .+++.++. ....+++|++++++.|+++. +....-++.+.
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence 34456666666666551 235667889999999999 67666765 45566999999999999985 33444445566
Q ss_pred ceeecccccccee
Q 038485 165 NANLYKLAGFFAI 177 (184)
Q Consensus 165 ~L~~~~l~~~~~~ 177 (184)
+|..+++..++.+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 6666666555543
No 59
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.47 E-value=0.0026 Score=34.96 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=14.7
Q ss_pred ccccCCCCCCC-CCCCCceeEEec
Q 038485 8 GYKDRKNGEGA-TDCCQWERVECS 30 (184)
Q Consensus 8 ~~~~~~~~~~~-~~~c~~~gv~c~ 30 (184)
...+..|+.+. .++|+|.||.|.
T Consensus 20 ~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 20 SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcccccCCCcCCCCCeeeccEEeC
Confidence 45688998643 899999999994
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.23 E-value=0.023 Score=46.74 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=28.4
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN 99 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n 99 (184)
..++.|+++++.+.. +| . -..+|+.|.++++.-....|.. + .++|+.|++.+|
T Consensus 52 ~~l~~L~Is~c~L~s---LP-~---LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES---LP-V---LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc---cC-C---CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCc
Confidence 456778888777665 43 1 1235677777663332233332 2 235566666655
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.23 E-value=0.02 Score=38.66 Aligned_cols=101 Identities=15% Similarity=0.323 Sum_probs=51.8
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.+++.+.+.. .+.. +....|..+.+|+.+.+..+ +....... |.....++.+.+.. .+.......|..+.
T Consensus 12 ~~l~~i~~~~-~~~~---I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 12 SNLESITFPN-TIKK---IGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TT--EEEETS-T--E---E-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred CCCCEEEECC-CeeE---eChhhccccccccccccccc-ccccceee----eecccccccccccc-cccccccccccccc
Confidence 3566777664 4544 67777777777888887764 54444333 66666777777765 33323334556677
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~ 147 (184)
.++.+.+..+ +. .++...+..+ .++.+.+..
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 7777877654 44 4555456666 777777653
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.00023 Score=54.97 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=69.0
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCC
Q 038485 60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD 139 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~ 139 (184)
+.+.+.|+.=++.+..+.- +.+|+.|+.|.|+-|.++. ...+..|++|+.|+|..|.|.+.-....+.++++
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 4566777777777765432 6789999999999999973 3457789999999999999983323335789999
Q ss_pred CcEEECCCCCCCcccc
Q 038485 140 LEELDIGGNKIDKFVV 155 (184)
Q Consensus 140 L~~L~ls~N~l~~~~~ 155 (184)
|+.|.+..|+-.+.-+
T Consensus 90 Lr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhHhhccCCcccccc
Confidence 9999999999887654
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0039 Score=48.90 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=20.0
Q ss_pred ccCCCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCC
Q 038485 110 THLSSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNK 149 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~ 149 (184)
..++.|.+||++.+- ++... ...+..++.|+++.++.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhc
Confidence 345666666666653 33211 1234455666666665544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.59 E-value=0.034 Score=37.54 Aligned_cols=92 Identities=25% Similarity=0.357 Sum_probs=57.1
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~ 131 (184)
++...|..+.+|+.+.+.. .+....... |...++++.+.+..+ +.......|..+.+++.+.+.. .+. .++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~----F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENA----FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTT----TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-T
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhh----ccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccc
Confidence 5667788889999999885 465555554 888889999999875 5534455677887899999976 444 5555
Q ss_pred hhhcCCCCCcEEECCCCCCCc
Q 038485 132 KELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls~N~l~~ 152 (184)
..+..++.++.+++..+ +..
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~ 94 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITE 94 (129)
T ss_dssp TTTTT-TTECEEEETTT--BE
T ss_pred ccccccccccccccCcc-ccE
Confidence 57888999999999765 543
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.51 E-value=0.02 Score=44.50 Aligned_cols=142 Identities=19% Similarity=0.187 Sum_probs=91.5
Q ss_pred CCceEEEecCCCCCCccc-cccCccCCCCCCCCEEeCCCCcCCCcchhhh-------hhhhcCCCCCcEEECCCCCCCch
Q 038485 33 MSRVIALDLSDTYGGEYW-YLNASLFTPFQQLESLDLTDNKIASCVENEG-------IERLSRLNNLKMLNLSGNSFNNS 104 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-------~~~~~~l~~L~~L~l~~n~~~~~ 104 (184)
+..+++++|+||.+..-. ..-...+.+-.+|+..++++-.. +..-+.+ -+++.+.|+++..+++.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 567899999999986410 00112234567788888776533 2322221 35578899999999999999877
Q ss_pred hHHhh----ccCCCCcEEeCCCccccCcccHhhhc-------------CCCCCcEEECCCCCCCccccCc--cccccccc
Q 038485 105 ILSSL----THLSSLRSLNLFWNRLEGSIDVKELD-------------SLRDLEELDIGGNKIDKFVVSK--GTTNTIKN 165 (184)
Q Consensus 105 ~p~~~----~~l~~L~~L~l~~n~~~~~l~~~~~~-------------~~~~L~~L~ls~N~l~~~~~~~--~~~~~l~~ 165 (184)
.|+.+ .....|.+|.+++|.+. .+..+.++ .-|.|+.++.+.|++....... ..+..=+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 77654 45678999999999884 54443333 4578999999999987643221 12222234
Q ss_pred eeeccccccce
Q 038485 166 ANLYKLAGFFA 176 (184)
Q Consensus 166 L~~~~l~~~~~ 176 (184)
|+.+.+..|-|
T Consensus 187 lk~vki~qNgI 197 (388)
T COG5238 187 LKEVKIQQNGI 197 (388)
T ss_pred ceeEEeeecCc
Confidence 55555555544
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.0027 Score=49.69 Aligned_cols=87 Identities=26% Similarity=0.305 Sum_probs=55.1
Q ss_pred CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCc-cccCccc-HhhhcCCCC
Q 038485 62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWN-RLEGSID-VKELDSLRD 139 (184)
Q Consensus 62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~l~-~~~~~~~~~ 139 (184)
.++++|+++..++...-.. .++...+|+.+.+.++++.+.+...+..-..|+.++++.+ .++ +.. ...+..|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhh
Confidence 5777788777765332211 1455667777777788777776677777777777777765 344 221 113556777
Q ss_pred CcEEECCCCCCCc
Q 038485 140 LEELDIGGNKIDK 152 (184)
Q Consensus 140 L~~L~ls~N~l~~ 152 (184)
|..|+++.+.+..
T Consensus 262 L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 262 LDELNLSWCFLFT 274 (419)
T ss_pred HhhcCchHhhccc
Confidence 7777777766544
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.022 Score=26.37 Aligned_cols=16 Identities=44% Similarity=0.384 Sum_probs=7.3
Q ss_pred CcEEeCCCccccCcccH
Q 038485 115 LRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~ 131 (184)
|++|++++|.++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 344444444444 4443
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.12 E-value=0.13 Score=42.37 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCceEEEecCCC-CCCccccccCccCCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCC--chhHHh
Q 038485 33 MSRVIALDLSDT-YGGEYWYLNASLFTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFN--NSILSS 108 (184)
Q Consensus 33 ~~~l~~L~l~~n-~l~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~ 108 (184)
+..+++|+++++ .++. ++... ..+|++|.+++| .+. ..|. +|+.|++..+... ..+|..
T Consensus 71 P~sLtsL~Lsnc~nLts---LP~~L---P~nLe~L~Ls~Cs~L~-sLP~----------sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 71 PNELTEITIENCNNLTT---LPGSI---PEGLEKLTVCHCPEIS-GLPE----------SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred CCCCcEEEccCCCCccc---CCchh---hhhhhheEccCccccc-cccc----------ccceEEeCCCCCcccccCcch
Confidence 567999999874 3333 33222 257888888887 443 2332 3445555443321 123332
Q ss_pred hccC------------------CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCC
Q 038485 109 LTHL------------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148 (184)
Q Consensus 109 ~~~l------------------~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N 148 (184)
+..+ .+|++|++++|... .+|. .+ ..+|+.|+++.+
T Consensus 134 Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~L--P~SLk~L~ls~n 187 (426)
T PRK15386 134 LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KL--PESLQSITLHIE 187 (426)
T ss_pred HhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-cc--cccCcEEEeccc
Confidence 2211 35677777776654 3332 11 246777777655
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.28 E-value=0.061 Score=23.21 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=3.3
Q ss_pred CcEEECCCCCC
Q 038485 140 LEELDIGGNKI 150 (184)
Q Consensus 140 L~~L~ls~N~l 150 (184)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.59 E-value=0.15 Score=24.34 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=7.9
Q ss_pred CCcEEeCCCccccCcccH
Q 038485 114 SLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~ 131 (184)
+|+.|++++|.++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 3444455555444 4443
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.59 E-value=0.15 Score=24.34 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=7.9
Q ss_pred CCcEEeCCCccccCcccH
Q 038485 114 SLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~ 131 (184)
+|+.|++++|.++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 3444455555444 4443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=0.043 Score=40.62 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=53.8
Q ss_pred CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc-CCCCcEEeCCCc-cccCcccHhhhcCC
Q 038485 61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH-LSSLRSLNLFWN-RLEGSIDVKELDSL 137 (184)
Q Consensus 61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~-l~~L~~L~l~~n-~~~~~l~~~~~~~~ 137 (184)
..++.++.++..|....-+. +..++.++.+.+.++.--+ ...+.+++ .++|+.|++++| +|+ .-....+..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~----L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEH----LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHH----HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHh
Confidence 34677788887776655554 7777888888777766432 22344443 378888888887 465 3333467777
Q ss_pred CCCcEEECCC
Q 038485 138 RDLEELDIGG 147 (184)
Q Consensus 138 ~~L~~L~ls~ 147 (184)
++|+.|.+..
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 8888777654
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.43 E-value=0.0024 Score=48.30 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=41.6
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC
Q 038485 59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR 138 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~ 138 (184)
.+...+.||++.|++...... |+.++.+..++++.|.+. ..|+.++....+.++++..|..+ ..|. .++..+
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence 344455555555554432221 444555555555555554 44555555555555555555554 4554 455555
Q ss_pred CCcEEECCCCCC
Q 038485 139 DLEELDIGGNKI 150 (184)
Q Consensus 139 ~L~~L~ls~N~l 150 (184)
.++.+++-.|++
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 555555544443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.37 E-value=1.1 Score=36.92 Aligned_cols=93 Identities=28% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhcc-CCCCcEEeCCCcc-ccCcccHhh
Q 038485 58 TPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTH-LSSLRSLNLFWNR-LEGSIDVKE 133 (184)
Q Consensus 58 ~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~-l~~L~~L~l~~n~-~~~~l~~~~ 133 (184)
...++|+.|+++++ ......+..........+.|+.++++++. +++..-..+.. ++.|+.+.+.++. +++.--...
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 44566666666652 11111110000012334566666666655 55444444432 5666666655555 332211113
Q ss_pred hcCCCCCcEEECCCCCC
Q 038485 134 LDSLRDLEELDIGGNKI 150 (184)
Q Consensus 134 ~~~~~~L~~L~ls~N~l 150 (184)
...++.|++|+++.+..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34556667776665543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.22 E-value=0.35 Score=22.53 Aligned_cols=8 Identities=63% Similarity=1.053 Sum_probs=2.5
Q ss_pred CEEeCCCC
Q 038485 64 ESLDLTDN 71 (184)
Q Consensus 64 ~~L~ls~n 71 (184)
++|++++|
T Consensus 5 ~~L~l~~n 12 (24)
T PF13516_consen 5 ETLDLSNN 12 (24)
T ss_dssp SEEE-TSS
T ss_pred CEEEccCC
Confidence 33333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.03 E-value=0.016 Score=44.07 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=67.5
Q ss_pred hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485 85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK 164 (184)
Q Consensus 85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~ 164 (184)
+......+.+|++.|++. .+-..|..+..+..++++.|.+. .+|. .++....++++++..|..+..|.+.. .++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~~p~s~~---k~~ 111 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQQPKSQK---KEP 111 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhhCCcccc---ccC
Confidence 556667788999999876 45566777788899999999998 8887 78888889999998888887654444 466
Q ss_pred ceeecccccccee
Q 038485 165 NANLYKLAGFFAI 177 (184)
Q Consensus 165 ~L~~~~l~~~~~~ 177 (184)
++..+++.++.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 6677777777653
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.56 E-value=0.63 Score=34.62 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcC-CCCCcEEECCCCC-CCcccc-Cccccccccc
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS-LRDLEELDIGGNK-IDKFVV-SKGTTNTIKN 165 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~-~~~L~~L~ls~N~-l~~~~~-~~~~~~~l~~ 165 (184)
..++.++.++..+....-+.+..+++++.+.+.++.--+.-....++. .++|+.|++++|+ |++... ....+.+|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 356788999998887778888899999999998886432222222333 4789999999775 554322 1244455555
Q ss_pred eeeccccc
Q 038485 166 ANLYKLAG 173 (184)
Q Consensus 166 L~~~~l~~ 173 (184)
|.+.++..
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 55555443
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.70 E-value=2.2 Score=20.57 Aligned_cols=15 Identities=60% Similarity=0.862 Sum_probs=11.1
Q ss_pred CCCcEEECCCCCCCc
Q 038485 138 RDLEELDIGGNKIDK 152 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~ 152 (184)
++|+.|+++.|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567788888887764
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.67 E-value=2.4 Score=20.63 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=11.6
Q ss_pred CCCcEEECCCCCCCc
Q 038485 138 RDLEELDIGGNKIDK 152 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~ 152 (184)
++|+.|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 468888888888864
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.38 E-value=3.3 Score=35.40 Aligned_cols=64 Identities=31% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCC--cCCCcchhhhhhhhc--CCCCCcEEECCCCCCCc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDN--KIASCVENEGIERLS--RLNNLKMLNLSGNSFNN 103 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n--~l~~~~p~~~~~~~~--~l~~L~~L~l~~n~~~~ 103 (184)
-+.+..++|++|++..+..+.. .-...++|+.|+|++| .+... .+ +. +...|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~~~--~e----l~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKISSE--SE----LDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhcch--hh----hhhhcCCCHHHeeecCCcccc
Confidence 3456677777777665222222 2244567777777776 33211 11 11 22345666666666653
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.09 E-value=3.1 Score=20.08 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=7.0
Q ss_pred CcEEeCCCccccCccc
Q 038485 115 LRSLNLFWNRLEGSID 130 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~ 130 (184)
|+.|++++|+++ .+|
T Consensus 4 L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 4 LKELNVSNNQLT-SLP 18 (26)
T ss_pred cceeecCCCccc-cCc
Confidence 444444455444 444
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=62.94 E-value=8.4 Score=31.76 Aligned_cols=108 Identities=29% Similarity=0.269 Sum_probs=61.3
Q ss_pred CCceEEEecCCC-C-CCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhc-CCCCCcEEECCCCC-CCchhHH
Q 038485 33 MSRVIALDLSDT-Y-GGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLS-RLNNLKMLNLSGNS-FNNSILS 107 (184)
Q Consensus 33 ~~~l~~L~l~~n-~-l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~-~l~~L~~L~l~~n~-~~~~~p~ 107 (184)
...+++|+++++ . ..............+.+|+.++++.+. ++...-.. +. ..+.|+.+.+.++. +++....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~----l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA----LASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH----HHhhCCCcceEccCCCCccchhHHH
Confidence 467888888873 1 111111112233556888888888877 54433322 33 36788888877776 5544433
Q ss_pred hh-ccCCCCcEEeCCCcccc-Cc-ccHhhhcCCCCCcEEEC
Q 038485 108 SL-THLSSLRSLNLFWNRLE-GS-IDVKELDSLRDLEELDI 145 (184)
Q Consensus 108 ~~-~~l~~L~~L~l~~n~~~-~~-l~~~~~~~~~~L~~L~l 145 (184)
.+ ..++.|++++++++... +. +.. ....+++++.+.+
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKL 328 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhh
Confidence 33 35677999999877543 11 222 2344666665553
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.42 E-value=6.9 Score=33.53 Aligned_cols=66 Identities=24% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCCcEEECCCCCCCchh--HHhhccCCCCcEEeCCCc--cccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 87 RLNNLKMLNLSGNSFNNSI--LSSLTHLSSLRSLNLFWN--RLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 87 ~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~n--~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+.+.+..+.+++|++.... ..--...++|..|+|++| .+...-....++. ..|+.|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 3455666667777665211 111123466777777777 4331111111222 2367777777777654
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.16 E-value=7.5 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.5
Q ss_pred ECCCCCCCchhHHhhccCCCCcEEeCCCcccc
Q 038485 95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLE 126 (184)
Q Consensus 95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 126 (184)
+|++|+|+..-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46778887555566777788888888888764
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.69 E-value=3.4 Score=34.96 Aligned_cols=116 Identities=25% Similarity=0.172 Sum_probs=47.8
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhh----hcCCCCCcEEECCCCCCCchhH----HhhccCCC-CcEEeCCCccccCc--
Q 038485 60 FQQLESLDLTDNKIASCVENEGIER----LSRLNNLKMLNLSGNSFNNSIL----SSLTHLSS-LRSLNLFWNRLEGS-- 128 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~----~~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~-L~~L~l~~n~~~~~-- 128 (184)
...++.++++.|.+....--....+ +....++++|.+.++.++...- ..+..... +..+++..|.+.+.
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 5556666666665531111000111 2234555666666665542111 11222233 44455555554321
Q ss_pred --ccHhhhcCC-CCCcEEECCCCCCCccccC--ccccccccceeeccccccce
Q 038485 129 --IDVKELDSL-RDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 129 --l~~~~~~~~-~~L~~L~ls~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~ 176 (184)
+.. .+..+ +.++++++..|.+...... ...+...++++.+.+..|.+
T Consensus 251 ~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 251 EKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 111 23333 3455566666655543221 12223334444444444444
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.11 E-value=31 Score=16.05 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=10.5
Q ss_pred CCCCcEEECCCCC-CCc
Q 038485 137 LRDLEELDIGGNK-IDK 152 (184)
Q Consensus 137 ~~~L~~L~ls~N~-l~~ 152 (184)
+++|++|+++++. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4577888887764 443
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=34.47 E-value=4.2 Score=34.45 Aligned_cols=68 Identities=25% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCCCCEEeCCCCcCCCcchhhhhhhhcCC-CCCcEEECCCCCCCch----hHHhhccCCCCcEEeCCCccc
Q 038485 58 TPFQQLESLDLTDNKIASCVENEGIERLSRL-NNLKMLNLSGNSFNNS----ILSSLTHLSSLRSLNLFWNRL 125 (184)
Q Consensus 58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l-~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~ 125 (184)
...+.|..+++++|.+....-..+.+.+... ..++++++..+.++.. +...+.....++.++++.|.+
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 4445555556666555533322222223332 3444555555554432 223333444555555555554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.40 E-value=30 Score=35.67 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=27.2
Q ss_pred ecCCCCCCccccccCccCCCCCCCCEEeCCCCcCC
Q 038485 40 DLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIA 74 (184)
Q Consensus 40 ~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~ 74 (184)
||++|.|.. ++...|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~Lst---Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST---IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc---cChHHhccCCCceEEEeeCCccc
Confidence 578888886 88888888999999999998875
Done!