Query 038485
Match_columns 184
No_of_seqs 137 out of 2821
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 8.7E-22 3E-26 154.1 10.3 162 10-180 23-190 (313)
2 3e6j_A Variable lymphocyte rec 99.9 1.3E-20 4.6E-25 141.3 13.6 150 17-177 14-172 (229)
3 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.3E-24 133.2 13.4 150 18-177 3-161 (208)
4 2v9t_B SLIT homolog 2 protein 99.8 1.6E-19 5.6E-24 134.6 13.0 150 18-177 7-165 (220)
5 2v70_A SLIT-2, SLIT homolog 2 99.8 5.1E-19 1.8E-23 131.9 12.6 150 18-177 7-166 (220)
6 3m19_A Variable lymphocyte rec 99.8 6.6E-19 2.3E-23 133.5 11.2 134 34-177 35-168 (251)
7 2o6q_A Variable lymphocyte rec 99.8 2.3E-18 7.7E-23 131.9 11.5 111 34-152 37-147 (270)
8 4eco_A Uncharacterized protein 99.8 5.8E-19 2E-23 150.1 7.7 133 12-155 58-292 (636)
9 3rgz_A Protein brassinosteroid 99.8 6.9E-19 2.4E-23 152.4 7.8 158 10-178 29-237 (768)
10 3m19_A Variable lymphocyte rec 99.8 1.7E-17 5.8E-22 125.7 13.2 135 33-177 58-192 (251)
11 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.5E-22 132.7 12.3 154 18-179 14-178 (361)
12 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-17 4.4E-22 140.3 12.9 138 33-179 51-188 (635)
13 3rfs_A Internalin B, repeat mo 99.7 3.6E-17 1.2E-21 125.3 12.9 136 32-177 83-218 (272)
14 2o6r_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 117.7 11.5 130 18-155 3-141 (177)
15 2o6q_A Variable lymphocyte rec 99.7 8.6E-17 2.9E-21 123.0 12.9 135 33-177 60-194 (270)
16 4ecn_A Leucine-rich repeat pro 99.7 9.1E-18 3.1E-22 146.9 7.6 144 25-177 315-561 (876)
17 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4E-21 123.0 12.6 111 34-152 32-143 (285)
18 1w8a_A SLIT protein; signaling 99.7 8E-17 2.7E-21 117.5 10.4 130 18-155 4-143 (192)
19 3vq2_A TLR4, TOLL-like recepto 99.7 1.4E-16 5E-21 134.0 13.1 137 33-179 31-168 (606)
20 2z66_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 125.9 9.4 149 18-177 3-163 (306)
21 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.4E-21 121.0 12.4 135 34-178 28-163 (276)
22 3v47_A TOLL-like receptor 5B a 99.7 1.3E-16 4.5E-21 129.9 11.9 154 18-179 4-169 (455)
23 3rgz_A Protein brassinosteroid 99.7 8E-17 2.7E-21 139.6 10.9 91 88-181 631-721 (768)
24 4fcg_A Uncharacterized protein 99.7 6E-18 2E-22 133.2 3.1 109 12-130 48-167 (328)
25 3o6n_A APL1; leucine-rich repe 99.7 3.1E-17 1.1E-21 131.5 7.3 134 34-177 45-178 (390)
26 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.7E-21 121.2 11.2 136 32-179 61-196 (272)
27 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-16 1.4E-20 120.0 13.0 113 33-153 55-168 (285)
28 2z80_A TOLL-like receptor 2, v 99.7 2E-16 6.9E-21 125.2 11.2 151 18-179 26-189 (353)
29 2z81_A CD282 antigen, TOLL-lik 99.7 1.9E-16 6.4E-21 131.8 10.9 149 21-179 3-163 (549)
30 1w8a_A SLIT protein; signaling 99.7 3.7E-16 1.3E-20 114.0 10.5 129 37-178 11-140 (192)
31 3oja_B Anopheles plasmodium-re 99.7 9.8E-17 3.4E-21 135.4 8.0 160 7-177 5-184 (597)
32 3v47_A TOLL-like receptor 5B a 99.7 6.2E-16 2.1E-20 125.9 12.3 136 34-179 275-410 (455)
33 2wfh_A SLIT homolog 2 protein 99.7 4.7E-16 1.6E-20 113.6 10.5 126 18-152 6-140 (193)
34 1p9a_G Platelet glycoprotein I 99.7 7.5E-16 2.6E-20 119.2 11.7 132 34-178 55-186 (290)
35 1xku_A Decorin; proteoglycan, 99.7 1.6E-15 5.6E-20 118.8 13.4 149 18-177 27-184 (330)
36 3t6q_A CD180 antigen; protein- 99.7 8.7E-16 3E-20 129.3 12.6 146 24-179 14-168 (606)
37 2id5_A Lingo-1, leucine rich r 99.7 5.8E-16 2E-20 127.0 11.2 144 24-177 13-165 (477)
38 2v9t_B SLIT homolog 2 protein 99.7 1.1E-15 3.6E-20 113.8 11.5 130 37-179 14-143 (220)
39 3zyi_A Leucine-rich repeat-con 99.7 1.1E-15 3.8E-20 124.8 12.7 116 24-147 56-180 (452)
40 1p9a_G Platelet glycoprotein I 99.7 2.9E-15 1E-19 115.9 14.3 142 23-176 66-207 (290)
41 1ziw_A TOLL-like receptor 3; i 99.7 6.7E-16 2.3E-20 131.6 11.5 148 21-178 3-159 (680)
42 2xwt_C Thyrotropin receptor; s 99.6 4.2E-16 1.4E-20 117.0 9.0 133 33-177 30-169 (239)
43 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.7E-20 111.7 10.6 130 33-178 65-195 (197)
44 3zyj_A Leucine-rich repeat-con 99.6 1.3E-15 4.5E-20 124.0 12.2 116 24-147 45-169 (440)
45 2je0_A Acidic leucine-rich nuc 99.6 9.2E-16 3.1E-20 107.1 9.4 130 33-172 16-148 (149)
46 2xot_A Amphoterin-induced prot 99.6 1E-15 3.5E-20 121.8 10.5 135 33-177 63-202 (361)
47 2z66_A Variable lymphocyte rec 99.6 1.7E-15 5.7E-20 117.6 11.5 116 55-177 144-261 (306)
48 1ogq_A PGIP-2, polygalacturona 99.6 7.6E-16 2.6E-20 120.3 9.4 86 91-180 199-284 (313)
49 2ft3_A Biglycan; proteoglycan, 99.6 2.2E-15 7.5E-20 118.3 12.0 146 20-177 31-185 (332)
50 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 108.9 12.3 127 37-177 13-139 (193)
51 2o6r_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 106.5 12.2 130 36-178 9-138 (177)
52 2o6s_A Variable lymphocyte rec 99.6 9.3E-16 3.2E-20 112.8 8.7 115 33-155 51-165 (208)
53 2z62_A TOLL-like receptor 4, v 99.6 2.1E-15 7.1E-20 115.5 10.9 137 33-177 51-190 (276)
54 2v70_A SLIT-2, SLIT homolog 2 99.6 3.6E-15 1.2E-19 111.0 11.1 115 32-154 55-169 (220)
55 2z63_A TOLL-like receptor 4, v 99.6 3.6E-15 1.2E-19 124.4 12.2 137 33-179 27-164 (570)
56 3j0a_A TOLL-like receptor 5; m 99.6 1.6E-15 5.3E-20 132.7 10.1 148 21-178 13-162 (844)
57 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 108.1 7.9 136 33-177 23-160 (168)
58 3e6j_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 109.3 12.0 129 37-179 22-150 (229)
59 4ezg_A Putative uncharacterize 99.6 4.7E-15 1.6E-19 108.3 9.5 131 33-179 43-174 (197)
60 3zyj_A Leucine-rich repeat-con 99.6 9.6E-15 3.3E-19 118.9 12.2 137 33-178 87-245 (440)
61 3vq2_A TLR4, TOLL-like recepto 99.6 6.7E-15 2.3E-19 123.9 11.4 139 32-178 54-195 (606)
62 3zyi_A Leucine-rich repeat-con 99.6 1.3E-14 4.3E-19 118.6 12.5 113 33-152 98-210 (452)
63 1wwl_A Monocyte differentiatio 99.6 1E-14 3.6E-19 113.7 11.5 133 34-178 149-288 (312)
64 2id5_A Lingo-1, leucine rich r 99.6 5.1E-15 1.8E-19 121.4 10.2 134 33-176 55-188 (477)
65 3oja_A Leucine-rich immune mol 99.6 9E-15 3.1E-19 120.8 11.2 143 20-177 107-250 (487)
66 3o6n_A APL1; leucine-rich repe 99.6 2.3E-14 8E-19 114.7 12.8 113 33-153 68-180 (390)
67 4g8a_A TOLL-like receptor 4; l 99.6 9.1E-15 3.1E-19 122.9 10.8 127 40-179 37-163 (635)
68 4fcg_A Uncharacterized protein 99.6 6.2E-15 2.1E-19 115.9 9.1 129 34-174 183-311 (328)
69 3oja_B Anopheles plasmodium-re 99.6 2.6E-14 9E-19 120.6 12.8 114 33-154 74-187 (597)
70 3g39_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 103.5 9.8 109 37-156 12-120 (170)
71 1h6t_A Internalin B; cell adhe 99.6 2.9E-14 9.9E-19 110.3 12.0 104 33-152 67-170 (291)
72 3o53_A Protein LRIM1, AGAP0063 99.6 2.5E-14 8.7E-19 111.7 11.6 140 23-177 110-250 (317)
73 1h6u_A Internalin H; cell adhe 99.6 5.2E-14 1.8E-18 109.7 13.1 103 34-152 85-187 (308)
74 2z63_A TOLL-like receptor 4, v 99.6 2E-14 7E-19 119.8 11.3 138 32-179 50-192 (570)
75 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5E-19 103.9 8.5 133 33-176 18-152 (176)
76 1wwl_A Monocyte differentiatio 99.5 1.2E-14 4.1E-19 113.3 8.6 136 33-177 120-266 (312)
77 2z80_A TOLL-like receptor 2, v 99.5 1.3E-14 4.4E-19 114.8 8.8 134 32-176 74-210 (353)
78 4eco_A Uncharacterized protein 99.5 1.7E-14 5.7E-19 122.7 10.1 149 21-177 192-366 (636)
79 1h6u_A Internalin H; cell adhe 99.5 5.8E-14 2E-18 109.4 12.1 126 33-178 62-187 (308)
80 1ziw_A TOLL-like receptor 3; i 99.5 1.1E-14 3.8E-19 124.1 8.6 138 33-178 48-185 (680)
81 2r9u_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 101.9 9.9 110 37-157 15-124 (174)
82 2z81_A CD282 antigen, TOLL-lik 99.5 1.4E-14 4.9E-19 120.4 8.9 118 32-156 48-166 (549)
83 2z7x_B TOLL-like receptor 1, v 99.5 4.5E-14 1.5E-18 116.8 11.5 127 34-176 21-150 (520)
84 3t6q_A CD180 antigen; protein- 99.5 1.1E-13 3.7E-18 116.5 13.7 136 35-178 255-390 (606)
85 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.7E-18 105.6 12.4 126 33-179 62-187 (263)
86 1xku_A Decorin; proteoglycan, 99.5 5E-14 1.7E-18 110.4 10.6 133 33-177 170-306 (330)
87 4fmz_A Internalin; leucine ric 99.5 1E-13 3.5E-18 109.1 12.4 127 33-177 220-346 (347)
88 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.6E-18 106.5 12.3 129 30-178 86-214 (291)
89 4glp_A Monocyte differentiatio 99.5 3E-14 1E-18 111.0 8.4 134 33-178 144-286 (310)
90 2ft3_A Biglycan; proteoglycan, 99.5 5.4E-14 1.8E-18 110.3 9.8 107 35-153 173-279 (332)
91 2xwt_C Thyrotropin receptor; s 99.5 1.1E-14 3.8E-19 109.2 5.6 110 33-152 54-170 (239)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 6.3E-14 2.2E-18 117.3 10.7 130 33-176 51-181 (562)
93 1dce_A Protein (RAB geranylger 99.5 5.5E-14 1.9E-18 118.1 10.3 123 35-170 442-566 (567)
94 4b8c_D Glucose-repressible alc 99.5 2.5E-14 8.7E-19 123.3 8.4 115 53-178 216-330 (727)
95 2z7x_B TOLL-like receptor 1, v 99.5 1E-13 3.5E-18 114.7 11.7 134 33-177 323-481 (520)
96 1xeu_A Internalin C; cellular 99.5 1.5E-13 5.1E-18 104.8 11.7 126 33-179 40-165 (263)
97 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4E-18 116.9 11.7 106 58-178 106-211 (605)
98 4b8c_D Glucose-repressible alc 99.5 6.1E-15 2.1E-19 127.2 3.4 113 33-157 223-335 (727)
99 3j0a_A TOLL-like receptor 5; m 99.5 6.7E-14 2.3E-18 122.4 9.6 139 32-178 46-188 (844)
100 3oja_A Leucine-rich immune mol 99.5 8.7E-14 3E-18 114.9 9.6 110 59-178 118-228 (487)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.2E-13 7.6E-18 113.9 11.8 127 36-177 33-159 (562)
102 1m9s_A Internalin B; cell inva 99.5 4.8E-13 1.6E-17 113.2 12.7 128 32-179 63-190 (605)
103 4ecn_A Leucine-rich repeat pro 99.5 1.7E-13 5.9E-18 120.1 10.1 148 21-177 434-608 (876)
104 3o53_A Protein LRIM1, AGAP0063 99.5 1.9E-13 6.4E-18 106.8 9.3 128 35-178 100-228 (317)
105 1o6v_A Internalin A; bacterial 99.5 6.6E-13 2.2E-17 108.8 12.9 126 33-178 264-389 (466)
106 4glp_A Monocyte differentiatio 99.5 6.5E-14 2.2E-18 109.0 6.4 114 59-177 143-264 (310)
107 2ell_A Acidic leucine-rich nuc 99.4 3.7E-13 1.3E-17 95.6 8.8 113 33-155 48-164 (168)
108 3g39_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 95.3 9.4 104 18-128 5-117 (170)
109 4fmz_A Internalin; leucine ric 99.4 8.2E-13 2.8E-17 103.9 10.5 110 57-179 217-326 (347)
110 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.6E-17 91.4 9.6 105 32-146 40-148 (149)
111 4ay9_X Follicle-stimulating ho 99.4 2.9E-13 9.8E-18 107.1 7.2 126 20-152 7-143 (350)
112 1o6v_A Internalin A; bacterial 99.4 2.5E-12 8.4E-17 105.3 12.0 107 58-179 262-368 (466)
113 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 92.7 9.5 105 63-177 14-118 (174)
114 2ifg_A High affinity nerve gro 99.4 4E-12 1.4E-16 100.1 11.4 110 21-153 7-118 (347)
115 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-12 5.8E-17 93.0 7.4 109 34-153 42-155 (176)
116 3cvr_A Invasion plasmid antige 99.3 1.7E-12 6E-17 109.0 6.6 116 11-152 33-154 (571)
117 3goz_A Leucine-rich repeat-con 99.3 2.1E-12 7.2E-17 102.5 5.4 140 35-178 52-210 (362)
118 1dce_A Protein (RAB geranylger 99.3 1E-11 3.5E-16 104.4 9.6 107 62-180 442-549 (567)
119 3bz5_A Internalin-J, INLJ; leu 99.3 2.1E-11 7.1E-16 99.9 11.2 77 34-126 64-140 (457)
120 2ast_B S-phase kinase-associat 99.3 4.4E-12 1.5E-16 99.2 6.5 110 58-174 139-257 (336)
121 2ca6_A RAN GTPase-activating p 99.3 3E-12 1E-16 102.3 5.2 142 34-178 159-317 (386)
122 3bz5_A Internalin-J, INLJ; leu 99.3 5.8E-11 2E-15 97.3 12.8 40 134-178 208-247 (457)
123 3goz_A Leucine-rich repeat-con 99.3 2.3E-12 8E-17 102.3 4.3 143 34-179 80-240 (362)
124 2ast_B S-phase kinase-associat 99.3 7.2E-12 2.4E-16 98.0 6.4 110 34-152 70-183 (336)
125 2ca6_A RAN GTPase-activating p 99.2 2.9E-12 9.9E-17 102.4 3.8 117 61-178 159-288 (386)
126 1ds9_A Outer arm dynein; leuci 99.2 7.4E-14 2.5E-18 102.0 -5.9 111 33-156 47-158 (198)
127 3cvr_A Invasion plasmid antige 99.2 7.4E-11 2.5E-15 99.1 9.8 79 88-178 159-244 (571)
128 2ifg_A High affinity nerve gro 99.2 1.7E-10 5.9E-15 90.8 9.8 104 64-177 11-116 (347)
129 1jl5_A Outer protein YOPM; leu 99.1 3.3E-10 1.1E-14 92.7 11.7 78 34-126 131-208 (454)
130 1ds9_A Outer arm dynein; leuci 99.1 5.7E-14 1.9E-18 102.6 -10.0 133 34-178 18-154 (198)
131 1jl5_A Outer protein YOPM; leu 99.1 5E-10 1.7E-14 91.6 11.6 100 33-152 152-251 (454)
132 3g06_A SSPH2 (leucine-rich rep 99.1 3E-10 1E-14 96.4 9.9 77 60-153 80-156 (622)
133 1z7x_W Ribonuclease inhibitor; 99.1 1.2E-11 4.2E-16 100.5 1.3 85 90-177 314-411 (461)
134 3g06_A SSPH2 (leucine-rich rep 99.1 4.5E-10 1.5E-14 95.3 10.8 78 89-178 221-298 (622)
135 1z7x_W Ribonuclease inhibitor; 99.1 2.9E-11 9.8E-16 98.3 3.2 117 60-177 255-383 (461)
136 3un9_A NLR family member X1; l 99.1 4.2E-11 1.4E-15 95.7 2.5 142 34-178 101-253 (372)
137 4ay9_X Follicle-stimulating ho 99.0 2.4E-10 8.4E-15 90.2 6.3 128 38-172 84-234 (350)
138 3un9_A NLR family member X1; l 98.9 1.1E-09 3.7E-14 87.5 5.8 120 34-154 126-255 (372)
139 3sb4_A Hypothetical leucine ri 98.9 1.1E-08 3.8E-13 80.0 9.8 85 88-177 225-310 (329)
140 3sb4_A Hypothetical leucine ri 98.8 1.6E-08 5.5E-13 79.1 8.0 87 60-153 225-312 (329)
141 1io0_A Tropomodulin; LRR prote 98.8 7.2E-09 2.5E-13 74.8 4.9 118 33-151 35-164 (185)
142 1io0_A Tropomodulin; LRR prote 98.7 1.3E-08 4.5E-13 73.4 4.9 121 56-177 31-164 (185)
143 3rw6_A Nuclear RNA export fact 98.7 2.7E-09 9.2E-14 81.4 1.1 67 86-155 167-237 (267)
144 3ogk_B Coronatine-insensitive 98.6 8.8E-09 3E-13 86.1 1.0 90 87-177 434-526 (592)
145 3ogk_B Coronatine-insensitive 98.4 2.7E-07 9.3E-12 77.1 6.2 109 35-146 139-251 (592)
146 2p1m_B Transport inhibitor res 98.3 5.2E-08 1.8E-12 81.4 -0.3 116 59-176 395-518 (594)
147 3rw6_A Nuclear RNA export fact 98.3 1.2E-06 4.2E-11 66.7 6.6 81 59-144 168-257 (267)
148 2p1m_B Transport inhibitor res 98.2 2.9E-07 9.9E-12 76.9 1.6 112 33-152 396-520 (594)
149 2ra8_A Uncharacterized protein 98.1 1E-06 3.5E-11 70.0 3.1 136 33-178 171-321 (362)
150 3e4g_A ATP synthase subunit S, 98.1 3E-06 1E-10 60.5 4.5 84 61-149 61-150 (176)
151 4fdw_A Leucine rich hypothetic 98.1 1.3E-05 4.4E-10 64.5 8.0 59 85-145 267-330 (401)
152 4fdw_A Leucine rich hypothetic 98.0 1.3E-05 4.6E-10 64.4 8.0 109 35-155 249-362 (401)
153 3e4g_A ATP synthase subunit S, 98.0 6.4E-06 2.2E-10 58.8 4.8 86 34-126 61-153 (176)
154 1pgv_A TMD-1, tropomodulin TMD 97.7 5.3E-05 1.8E-09 55.0 4.9 43 60-102 69-111 (197)
155 2ra8_A Uncharacterized protein 97.7 1.2E-05 4.3E-10 63.8 1.6 119 33-152 192-321 (362)
156 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00014 4.9E-09 52.7 6.3 119 57-176 37-169 (197)
157 4gt6_A Cell surface protein; l 97.3 0.00097 3.3E-08 53.1 8.6 90 52-149 279-368 (394)
158 4h09_A Hypothetical leucine ri 97.0 0.0021 7.2E-08 50.7 7.5 88 52-146 254-341 (379)
159 4h09_A Hypothetical leucine ri 96.9 0.0063 2.2E-07 47.9 9.7 110 52-171 231-340 (379)
160 4fs7_A Uncharacterized protein 96.9 0.0061 2.1E-07 48.4 9.2 61 85-148 293-353 (394)
161 4gt6_A Cell surface protein; l 96.7 0.012 4E-07 46.7 9.5 113 52-175 256-368 (394)
162 3rfe_A Platelet glycoprotein I 96.7 0.0058 2E-07 41.1 6.6 55 38-102 12-68 (130)
163 3rfe_A Platelet glycoprotein I 96.5 0.0028 9.7E-08 42.6 4.1 56 65-126 12-68 (130)
164 4fs7_A Uncharacterized protein 96.4 0.0055 1.9E-07 48.6 6.0 88 53-148 289-376 (394)
165 2lz0_A Uncharacterized protein 56.7 23 0.00078 22.0 4.8 43 52-99 11-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=8.7e-22 Score=154.11 Aligned_cols=162 Identities=21% Similarity=0.309 Sum_probs=132.8
Q ss_pred ccCCCCCCCCCCCC--ceeEEecCCC--CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhh
Q 038485 10 KDRKNGEGATDCCQ--WERVECSNTM--SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIER 84 (184)
Q Consensus 10 ~~~~~~~~~~~~c~--~~gv~c~~~~--~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~ 84 (184)
.++.|+. +.++|. |.||.|.... .++++|+++++.+.+...++ ..+..+++|++|++++ |.+.+..|..
T Consensus 23 ~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~---- 96 (313)
T 1ogq_A 23 TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPA---- 96 (313)
T ss_dssp GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGG----
T ss_pred cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChh----
Confidence 5788974 678898 9999998633 79999999999997421244 4568899999999995 8898888877
Q ss_pred hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485 85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK 164 (184)
Q Consensus 85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~ 164 (184)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+| ..+..+.
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~ 173 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIP--DSYGSFS 173 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECC--GGGGCCC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCC--HHHhhhh
Confidence 88999999999999999888888999999999999999999877776 78899999999999999987666 3344565
Q ss_pred -ceeeccccccceeeEE
Q 038485 165 -NANLYKLAGFFAIWFI 180 (184)
Q Consensus 165 -~L~~~~l~~~~~~~~~ 180 (184)
.|+.+++++|.+.+.+
T Consensus 174 ~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKI 190 (313)
T ss_dssp TTCCEEECCSSEEEEEC
T ss_pred hcCcEEECcCCeeeccC
Confidence 7777888888877543
No 2
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.3e-20 Score=141.26 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=131.8
Q ss_pred CCCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485 17 GATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSR 87 (184)
Q Consensus 17 ~~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~ 87 (184)
.+++.|+|.+|.|... +.+++.|++++|.+.. +.+..|..+++|++|++++|.+....+.. |..
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~~~ 86 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGV----FDS 86 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhh----ccc
Confidence 3899999999999762 4578999999999997 77788899999999999999998776665 789
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~ 167 (184)
+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|++++.++ ..+..+++|.
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~ 162 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLT 162 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCH--HHHhCCCCCC
Confidence 999999999999999666667889999999999999998 8887 78999999999999999998665 5566788888
Q ss_pred ecccccccee
Q 038485 168 LYKLAGFFAI 177 (184)
Q Consensus 168 ~~~l~~~~~~ 177 (184)
.+++.+|.+.
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 8999998864
No 3
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.6e-19 Score=133.18 Aligned_cols=150 Identities=24% Similarity=0.287 Sum_probs=127.6
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
+.+.|.|.++.|... ..++++|++++|.+.. ++...|..+++|++|++++|.+....+.. +..+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l 75 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKL 75 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhh----cCCC
Confidence 567789999999752 4579999999999987 78888899999999999999999776665 7889
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~ 168 (184)
++|++|++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++|++++.++ ..+..+++|+.
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~ 152 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 152 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccE
Confidence 99999999999999665666889999999999999998 6665468899999999999999998665 44556778888
Q ss_pred cccccccee
Q 038485 169 YKLAGFFAI 177 (184)
Q Consensus 169 ~~l~~~~~~ 177 (184)
+++++|.+.
T Consensus 153 L~l~~N~~~ 161 (208)
T 2o6s_A 153 IWLHDNPWD 161 (208)
T ss_dssp EECCSCCBC
T ss_pred EEecCCCee
Confidence 888888764
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.6e-19 Score=134.56 Aligned_cols=150 Identities=24% Similarity=0.354 Sum_probs=129.3
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
..+.|.|..+.|... +..+++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+
T Consensus 7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l 79 (220)
T 2v9t_B 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGL 79 (220)
T ss_dssp TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC---cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCC
Confidence 556788999999752 3578999999999997 88888899999999999999999887877 9999
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~ 168 (184)
++|++|++++|.++...+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|++++.++ ..+..+++|..
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~ 156 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQT 156 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCE
Confidence 99999999999999555566789999999999999998 5554489999999999999999998766 44567888888
Q ss_pred cccccccee
Q 038485 169 YKLAGFFAI 177 (184)
Q Consensus 169 ~~l~~~~~~ 177 (184)
+++++|.+.
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 899998874
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=131.88 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=128.7
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccc-cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYL-NASLFTPFQQLESLDLTDNKIASCVENEGIERLSR 87 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~ 87 (184)
..+.|.|..+.|... ...+++|++++|.+.. + +...|..+++|++|++++|.+++..+.. |..
T Consensus 7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~ 79 (220)
T 2v70_A 7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGA----FEG 79 (220)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTT----TTT
T ss_pred CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHH----hCC
Confidence 556788999999652 3467899999999987 5 4456789999999999999999877766 899
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~ 167 (184)
+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++++.+| ..+..+++|.
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~ 156 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHSLS 156 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCT--TTTTTCTTCC
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECH--HHhcCCCCCC
Confidence 999999999999999777888999999999999999998 4544489999999999999999999766 4556788889
Q ss_pred ecccccccee
Q 038485 168 LYKLAGFFAI 177 (184)
Q Consensus 168 ~~~l~~~~~~ 177 (184)
.+++++|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9999999875
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=6.6e-19 Score=133.48 Aligned_cols=134 Identities=25% Similarity=0.310 Sum_probs=77.5
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
..++.|++++|.+.. +++..|..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++...+..+..++
T Consensus 35 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcccC
Confidence 456677777777665 55555666666666666666666655544 55666666666666666644444555556
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+|+.|++++|.++ .++...+..+++|++|++++|++++.++ ..+..+++|+.+++++|.+.
T Consensus 108 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCS
T ss_pred CCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCC
Confidence 6666666666665 4444345555566666666666555433 22334445555555555544
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-18 Score=131.87 Aligned_cols=111 Identities=27% Similarity=0.362 Sum_probs=62.0
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
..+++|++++|.+.. +++..|..+++|++|++++|.+....+.. |..+++|++|++++|.+....+..+..++
T Consensus 37 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 357777787777775 55555666667777777766666544443 45555666666666655543334444555
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
+|+.|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus 110 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 110 NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCc
Confidence 5555555555554 3333234444444555554444444
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=5.8e-19 Score=150.13 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCc---eeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcC---------------
Q 038485 12 RKNGEGATDCCQW---ERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKI--------------- 73 (184)
Q Consensus 12 ~~~~~~~~~~c~~---~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l--------------- 73 (184)
..|+. ++++|.| .||.|.. .++++.|+|+++.+.+ .++ +.+..+++|++|++++|.+
T Consensus 58 ~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g--~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~ 132 (636)
T 4eco_A 58 ANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASG--RVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132 (636)
T ss_dssp CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEE--EEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTT
T ss_pred CCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecCcccCC--cCC-hHHhcCccceEEECcCCccccCCccccccccccC
Confidence 46974 7899999 9999986 4799999999999976 344 5568899999999988844
Q ss_pred ---------------------------------------------------------------CCcchhhhhhhhcCCCC
Q 038485 74 ---------------------------------------------------------------ASCVENEGIERLSRLNN 90 (184)
Q Consensus 74 ---------------------------------------------------------------~~~~p~~~~~~~~~l~~ 90 (184)
++ .|.. ++.+++
T Consensus 133 ~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~ 207 (636)
T 4eco_A 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA----VMRLTK 207 (636)
T ss_dssp CCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG----GGGCTT
T ss_pred chHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH----HhcccC
Confidence 22 3444 788888
Q ss_pred CcEEECCCCCCCch-----------------hHHhhc--cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-C
Q 038485 91 LKMLNLSGNSFNNS-----------------ILSSLT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-I 150 (184)
Q Consensus 91 L~~L~l~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l 150 (184)
|++|++++|.+++. +|..++ .+++|++|++++|.+.+.+|. .++.+++|++|++++|+ +
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGI 286 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTS
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCC
Confidence 99999999998874 788888 888899999988888878886 78888888888888887 7
Q ss_pred Cc-ccc
Q 038485 151 DK-FVV 155 (184)
Q Consensus 151 ~~-~~~ 155 (184)
++ .+|
T Consensus 287 ~~~~lp 292 (636)
T 4eco_A 287 SGEQLK 292 (636)
T ss_dssp CHHHHH
T ss_pred ccccch
Confidence 76 444
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=6.9e-19 Score=152.44 Aligned_cols=158 Identities=24% Similarity=0.238 Sum_probs=97.1
Q ss_pred ccCCCCCCCCCCCCceeEEecCCCCceEEEecCCCCCCccc-cccC----------------------ccCCCCCCCCEE
Q 038485 10 KDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYW-YLNA----------------------SLFTPFQQLESL 66 (184)
Q Consensus 10 ~~~~~~~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~-~~~~----------------------~~~~~l~~L~~L 66 (184)
.++.|+ .+.+||+|.||.|. .++++.|+++++.+.+.. .+++ ..+..+++|++|
T Consensus 29 ~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L 105 (768)
T 3rgz_A 29 LLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105 (768)
T ss_dssp SSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEE
T ss_pred cccCCC-CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEE
Confidence 688997 47899999999998 579999999998876510 0111 345677788888
Q ss_pred eCCCCcCCCcchh--hhhhhhcCCCCCcEEECCCCCCCchhHHhh-ccCCCCcEEeCCCccccCcccHhh---h------
Q 038485 67 DLTDNKIASCVEN--EGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSLNLFWNRLEGSIDVKE---L------ 134 (184)
Q Consensus 67 ~ls~n~l~~~~p~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~l~~~~---~------ 134 (184)
++++|.+.+..|. . +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+. . +
T Consensus 106 ~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L 180 (768)
T 3rgz_A 106 DLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGEL 180 (768)
T ss_dssp ECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTC
T ss_pred ECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCC
Confidence 8888887766665 4 5566666666666665554444332 3444555555555544422221 2 2
Q ss_pred ----------------cCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 135 ----------------DSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 135 ----------------~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
..+++|++|++++|.+.+.+|. +..+++|+.+++++|.+.+
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCS
T ss_pred CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCC
Confidence 4455556666666665554443 3445566666666666553
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.7e-17 Score=125.70 Aligned_cols=135 Identities=24% Similarity=0.341 Sum_probs=118.8
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.+....+.. +..+++|+.|++++|.++...+..+..+
T Consensus 58 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQT---LSAGVFDDLTELGTLGLANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp CTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCEEECCCCcCCc---cCHhHhccCCcCCEEECCCCcccccChhH----hcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 5789999999999997 78888899999999999999999877766 8899999999999999996666668899
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
++|+.|++++|.++ .++...+..+++|++|++++|++++.++ ..+..+++|..+++++|.+.
T Consensus 131 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCBC
T ss_pred CcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCcee
Confidence 99999999999998 6666579999999999999999998766 44567888888899998875
No 11
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=132.73 Aligned_cols=154 Identities=24% Similarity=0.287 Sum_probs=127.1
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCC-CCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFT-PFQQLESLDLTDNKIASCVENEGIERLSR 87 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~~~~~ 87 (184)
..+.|.+..+.|... +..++.|+|++|.+.. ++...|. .+++|++|++++|.+....+.. |..
T Consensus 14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~ 86 (361)
T 2xot_A 14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVP 86 (361)
T ss_dssp TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTT
T ss_pred CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhh----ccC
Confidence 667778888999652 3458899999999997 8888777 8999999999999999877776 899
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcc-ccccccce
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKG-TTNTIKNA 166 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~-~~~~l~~L 166 (184)
+++|++|++++|.+....+..|..+++|+.|++++|.++ .++...+..+++|++|++++|++++.++... .+..+.+|
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 999999999999999766777899999999999999998 5554489999999999999999998655321 11457788
Q ss_pred eeccccccceeeE
Q 038485 167 NLYKLAGFFAIWF 179 (184)
Q Consensus 167 ~~~~l~~~~~~~~ 179 (184)
..+++++|.+...
T Consensus 166 ~~L~L~~N~l~~l 178 (361)
T 2xot_A 166 MLLDLSSNKLKKL 178 (361)
T ss_dssp CEEECCSSCCCCC
T ss_pred CEEECCCCCCCcc
Confidence 8888888888643
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=1.3e-17 Score=140.28 Aligned_cols=138 Identities=25% Similarity=0.292 Sum_probs=120.1
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+..+++|+|++|.++. +++..|..+++|++|++++|.+++..+.. |..+++|++|++++|.++...+..|..+
T Consensus 51 p~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CcCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 4578999999999997 88889999999999999999999877776 8999999999999999996666789999
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|++|++++|.++ .++...++.+++|++|++++|.+.+... ...+..+++|+.+++++|.+...
T Consensus 124 ~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 124 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccc
Confidence 99999999999998 6776579999999999999999986432 24455688888888999888654
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=3.6e-17 Score=125.34 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=104.4
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
...++++|++++|.+.. +++..|..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+..
T Consensus 83 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp TCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCEEECCCCccCc---cChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhcc
Confidence 45678888888888776 67777788888888888888888766665 678888888888888888655666778
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+++|+.|++++|.++ .++...+..+++|++|++++|++.+.++ ..+..+++|+.+++++|.+.
T Consensus 156 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBC
T ss_pred CccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCcc
Confidence 888888888888887 5555457788888888888888887665 34456777777777777664
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.5e-17 Score=117.68 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=109.3
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
+.+.|+|.++.|... ...+++|++++|.+.. ++...|..+++|++|++++|.+++..+.. +..+
T Consensus 3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l 75 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL 75 (177)
T ss_dssp TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence 456788999999651 4578999999999986 77777888999999999999998776665 7889
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
++|+.|++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|+++++++|++.+..+
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999999998666666788999999999999998 6776467889999999999999987655
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=8.6e-17 Score=123.05 Aligned_cols=135 Identities=26% Similarity=0.327 Sum_probs=78.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++...|..+++|++|++++|.+....+.. +..+++|+.|++++|.+....+..+..+
T Consensus 60 l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp CTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCcC
Confidence 4566777777777665 66666666666777777766666554443 5566666666666666664444555556
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
++|++|++++|.++ .++...+..+++|+.|++++|.+.+.++ ..+..+++|+.+++++|.+.
T Consensus 133 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCS
T ss_pred cCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCC
Confidence 66666666666665 4444345555666666666665555433 22334444555555555443
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=9.1e-18 Score=146.94 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=110.4
Q ss_pred eeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeC-CCCcCCCc---------------------------
Q 038485 25 ERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDL-TDNKIASC--------------------------- 76 (184)
Q Consensus 25 ~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~l-s~n~l~~~--------------------------- 76 (184)
.||.|.. .++++.|+|+++.+.+ .++ +.+..+++|++|++ ++|.+.+.
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G--~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~ 390 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKG--RVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEE--EEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred CceEecC-CCCEEEEECccCCCCC--cCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhh
Confidence 9999986 5799999999999986 344 55689999999999 77754333
Q ss_pred -------------------------------------------------chhhhhhhhcCCCCCcEEECCCCCCCc----
Q 038485 77 -------------------------------------------------VENEGIERLSRLNNLKMLNLSGNSFNN---- 103 (184)
Q Consensus 77 -------------------------------------------------~p~~~~~~~~~l~~L~~L~l~~n~~~~---- 103 (184)
.|.. +..+++|+.|++++|.+++
T Consensus 391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~ 466 (876)
T 4ecn_A 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIA 466 (876)
T ss_dssp HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBS
T ss_pred hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCccc
Confidence 3444 7888999999999999987
Q ss_pred -------------hhHHhhc--cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-CCc-cccC-cc----ccc
Q 038485 104 -------------SILSSLT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-IDK-FVVS-KG----TTN 161 (184)
Q Consensus 104 -------------~~p~~~~--~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l~~-~~~~-~~----~~~ 161 (184)
.+|..++ .+++|+.|++++|.+.+.+|. .+..+++|+.|++++|+ +++ .+|. .. .+.
T Consensus 467 ~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred ccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 3788877 889999999999988878886 78889999999999997 877 4442 11 122
Q ss_pred cccceeecccccccee
Q 038485 162 TIKNANLYKLAGFFAI 177 (184)
Q Consensus 162 ~l~~L~~~~l~~~~~~ 177 (184)
.+.+|+.+++++|.+.
T Consensus 546 ~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TTTTCCEEECCSSCCC
T ss_pred ccCCccEEEeeCCcCC
Confidence 3346666666666665
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.2e-16 Score=123.00 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=53.5
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhccC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL 112 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l 112 (184)
..+++|++++|.+.. +++..|..+++|++|++++|.+.+..+.. +..+++|++|++++|. +....|..+..+
T Consensus 32 ~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 355666666666554 44444555555555555555555444433 4445555555555554 443334444444
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
++|+.|++++|.++ .++...+..+++|++|++++|++.+
T Consensus 105 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccc
Confidence 44444444444444 2222234444444444444444443
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=8e-17 Score=117.50 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=108.5
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCc-cCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNAS-LFTPFQQLESLDLTDNKIASCVENEGIERLSR 87 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~ 87 (184)
..+.|.|..+.|... ...+++|++++|.+.. +++. .|..+++|++|++++|.+++..|.. |..
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~ 76 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR---ISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEG 76 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS---BCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTT
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc---cCCccccccCCCCCEEECCCCCCCCcCHhH----cCC
Confidence 456678888888652 3478999999999986 6553 5788999999999999999887777 889
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|++|++++|++.+..+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999977777788999999999999999854454 78899999999999999886543
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=1.4e-16 Score=134.01 Aligned_cols=137 Identities=23% Similarity=0.244 Sum_probs=116.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+.++++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|++|++++|.+.+..|..++.+
T Consensus 31 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcCCc
Confidence 4678999999999987 77878899999999999999999877776 8899999999999999997778889999
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc-ccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF-VVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~-~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|++|++++|.++ .++...++.+++|++|++++|.+.+. +| ..+..+++|+.+++++|.+...
T Consensus 104 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 104 TSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC--GGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceech--HhHhhcCCCCEEEccCCcceec
Confidence 99999999999998 55533788999999999999998862 34 3455778888888888887654
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=5.6e-17 Score=125.91 Aligned_cols=149 Identities=23% Similarity=0.267 Sum_probs=106.6
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc--hhhhhhhhc
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV--ENEGIERLS 86 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~ 86 (184)
+.+.|.|.++.|... +.++++|++++|.+.. ++...|..+++|++|++++|.+.... +.. +.
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~ 75 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS----DF 75 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHH----HH
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccc----cc
Confidence 456789999999762 4579999999999997 88888899999999999999987442 344 56
Q ss_pred CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccc
Q 038485 87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165 (184)
Q Consensus 87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~ 165 (184)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.++ ..+..+++
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~ 151 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSS 151 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECST--TTTTTCTT
T ss_pred cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccch--hhcccCcC
Confidence 7788888888888776 45656677777777777777776 3332 356666777777777777665444 23334555
Q ss_pred eeecccccccee
Q 038485 166 ANLYKLAGFFAI 177 (184)
Q Consensus 166 L~~~~l~~~~~~ 177 (184)
|+.+++++|.+.
T Consensus 152 L~~L~l~~n~l~ 163 (306)
T 2z66_A 152 LEVLKMAGNSFQ 163 (306)
T ss_dssp CCEEECTTCEEG
T ss_pred CCEEECCCCccc
Confidence 555555555554
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.2e-16 Score=120.97 Aligned_cols=135 Identities=26% Similarity=0.295 Sum_probs=88.6
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
..+++|++++|.+.. ++...|..+++|++|++++|.+....+.. +..+++|++|++++|.+.+..+..+..++
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 457777777777775 55556677777777777777776655544 66777777777777777755556666777
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc-cCccccccccceeeccccccceee
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV-VSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~-~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+|+.|++++|.+. .++...+..+++|++|++++|.+.+.. | ..+..+++|+.+++++|.+..
T Consensus 101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~--~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCSSCCCE
T ss_pred cccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCc--hhhccCCCCCEEECCCCCCCc
Confidence 7777777777776 343334666677777777777766532 2 234455666666666666554
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=1.3e-16 Score=129.88 Aligned_cols=154 Identities=23% Similarity=0.249 Sum_probs=121.1
Q ss_pred CCCCCCcee--EEecCC--------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc-hhhhhhhhc
Q 038485 18 ATDCCQWER--VECSNT--------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV-ENEGIERLS 86 (184)
Q Consensus 18 ~~~~c~~~g--v~c~~~--------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~ 86 (184)
+...|.|.+ +.|... +.++++|++++|.+.. +.+..|..+++|++|++++|.+.+.. +.. |.
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~----~~ 76 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNT----FR 76 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTT----TT
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECccc----cc
Confidence 344555555 778652 3679999999999987 77777899999999999999887554 344 88
Q ss_pred CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccc
Q 038485 87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165 (184)
Q Consensus 87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~ 165 (184)
.+++|++|++++|.+.+..|..++.+++|++|++++|.+++..+. ..+..+++|++|++++|.+.+..|. ..+..+++
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~ 155 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRR 155 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-GGGGGCTT
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-cccCCCCc
Confidence 899999999999999977788899999999999999999854443 1288899999999999999886553 22556788
Q ss_pred eeeccccccceeeE
Q 038485 166 ANLYKLAGFFAIWF 179 (184)
Q Consensus 166 L~~~~l~~~~~~~~ 179 (184)
|+.+++++|.+.+.
T Consensus 156 L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 156 FHVLDLTFNKVKSI 169 (455)
T ss_dssp CCEEECTTCCBSCC
T ss_pred ccEEeCCCCccccc
Confidence 88888888887654
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=8e-17 Score=139.56 Aligned_cols=91 Identities=25% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~ 167 (184)
++.|+.+++++|.+++.+|..++.++.|+.|++++|.++|.+|. .++.+++|+.|++++|+++|.+| ..+..++.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIP--QAMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCC--GGGGGCCCCS
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCC
Confidence 46677888888888888888888888888888888888888887 78888888888888888888877 5556788888
Q ss_pred eccccccceeeEEE
Q 038485 168 LYKLAGFFAIWFII 181 (184)
Q Consensus 168 ~~~l~~~~~~~~~~ 181 (184)
.++++.|.+++.++
T Consensus 708 ~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 708 EIDLSNNNLSGPIP 721 (768)
T ss_dssp EEECCSSEEEEECC
T ss_pred EEECcCCcccccCC
Confidence 88888888887664
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=6e-18 Score=133.18 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=70.6
Q ss_pred CCCC---CCCCCCCCceeEEecC--------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhh
Q 038485 12 RKNG---EGATDCCQWERVECSN--------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE 80 (184)
Q Consensus 12 ~~~~---~~~~~~c~~~gv~c~~--------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 80 (184)
+.|. ..+.++|.|.|+.|.. ...++++|++++|.+.. ++... ..+++|++|++++|.+. ..|..
T Consensus 48 ~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~---lp~~l-~~l~~L~~L~L~~n~l~-~lp~~ 122 (328)
T 4fcg_A 48 SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ---FPDQA-FRLSHLQHMTIDAAGLM-ELPDT 122 (328)
T ss_dssp HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS---CCSCG-GGGTTCSEEEEESSCCC-CCCSC
T ss_pred hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh---cChhh-hhCCCCCEEECCCCCcc-chhHH
Confidence 4563 3478999999999952 34678888888888875 55543 44677777777777766 44544
Q ss_pred hhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCccc
Q 038485 81 GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSID 130 (184)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~ 130 (184)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|
T Consensus 123 ----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 123 ----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp ----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred ----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence 566666666666666666 555556555666666665554443443
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=3.1e-17 Score=131.46 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=84.9
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.+++.|+++++.+.. ++...|..+++|++|++++|.+....+.. +..+++|++|++++|.+.+..|..++.++
T Consensus 45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 456667777776665 66655666677777777777766555544 66677777777777776655555666667
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+|++|++++|.++ .+|...+..+++|++|++++|.+.+.++ ..+..+++|+.+++++|.+.
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcCC
Confidence 7777777777766 5555345666677777777777666544 22334555555555555554
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2e-16 Score=121.23 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=116.2
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
...++++|++++|.+.. ++ .+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..
T Consensus 61 ~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHD---IS--ALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp GCTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cCCCCcEEECCCCCCCC---ch--hhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 36789999999999886 43 4688999999999999999877766 789999999999999999766777899
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
+++|+.|++++|.++ .++...+..+++|+.|++++|++++.++ ..+..+++|+.+++++|.+.+.
T Consensus 132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCcc
Confidence 999999999999998 6665468899999999999999998665 3455678888889999988754
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=4.1e-16 Score=119.96 Aligned_cols=113 Identities=26% Similarity=0.307 Sum_probs=58.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
..++++|++++|.+.. +.+..|..+++|++|++++|. +....+.. +..+++|++|++++|.+.+..|..+..
T Consensus 55 ~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~ 127 (285)
T 1ozn_A 55 CRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRLHTLHLDRCGLQELGPGLFRG 127 (285)
T ss_dssp CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCccce---eCHhhcCCccCCCEEeCCCCCCccccCHHH----hcCCcCCCEEECCCCcCCEECHhHhhC
Confidence 3456666666665554 444445555555555555554 44433433 455555555555555555444444555
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+++|+.|++++|.++ .++...+..+++|++|++++|.+++.
T Consensus 128 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence 555555555555554 33332344555555555555555443
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=125.22 Aligned_cols=151 Identities=25% Similarity=0.263 Sum_probs=123.1
Q ss_pred CCCCCCceeEEecC-----------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc
Q 038485 18 ATDCCQWERVECSN-----------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS 86 (184)
Q Consensus 18 ~~~~c~~~gv~c~~-----------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~ 86 (184)
....|.|.++ |.- ...++++|++++|.+.. ++...|..+++|++|++++|.+.+..+.. +.
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 97 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDS----FS 97 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence 6678889887 431 13579999999999997 77778899999999999999999877776 88
Q ss_pred CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCC-CCccccCcccccccc
Q 038485 87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIK 164 (184)
Q Consensus 87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~ 164 (184)
.+++|++|++++|.++...+..+..+++|++|++++|.++ .++. ..+..+++|++|++++|+ +.+.++ ..+..++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~ 174 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAGLT 174 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCH--HHccCCC
Confidence 9999999999999999665666899999999999999998 6664 468889999999999984 665544 3445677
Q ss_pred ceeeccccccceeeE
Q 038485 165 NANLYKLAGFFAIWF 179 (184)
Q Consensus 165 ~L~~~~l~~~~~~~~ 179 (184)
+|+.+++++|.+...
T Consensus 175 ~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 175 FLEELEIDASDLQSY 189 (353)
T ss_dssp EEEEEEEEETTCCEE
T ss_pred CCCEEECCCCCcCcc
Confidence 888888888877654
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.68 E-value=1.9e-16 Score=131.79 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=121.8
Q ss_pred CCCceeEEecC-----------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCC
Q 038485 21 CCQWERVECSN-----------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN 89 (184)
Q Consensus 21 ~c~~~gv~c~~-----------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~ 89 (184)
.|.|.++ |.. ....+++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~ 74 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDA----FYSLG 74 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTCT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhh----ccccc
Confidence 4777777 542 13579999999999987 77777899999999999999999877776 89999
Q ss_pred CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485 90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168 (184)
Q Consensus 90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~ 168 (184)
+|++|++++|.+.+..|..++.+++|++|++++|.+++ ..+. .+..+++|++|++++|.+.+.++. ..+..+++|+.
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~ 152 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCH-hhhhcccccCe
Confidence 99999999999997778889999999999999999974 2343 688999999999999984443332 34556888888
Q ss_pred ccccccceeeE
Q 038485 169 YKLAGFFAIWF 179 (184)
Q Consensus 169 ~~l~~~~~~~~ 179 (184)
+++++|.+.+.
T Consensus 153 L~L~~n~l~~~ 163 (549)
T 2z81_A 153 LEIKALSLRNY 163 (549)
T ss_dssp EEEEETTCCEE
T ss_pred eeccCCccccc
Confidence 88888887654
No 30
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.7e-16 Score=113.96 Aligned_cols=129 Identities=20% Similarity=0.208 Sum_probs=110.6
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchh-hhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVEN-EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 115 (184)
+.++++++.+.. ++...+ .++++|++++|.+.+..+. . +..+++|+.|++++|.+++..|..+..+++|
T Consensus 11 ~~l~~s~~~l~~---ip~~~~---~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCc---CccCCC---CCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 689999999987 776543 3899999999999887664 3 7889999999999999998879999999999
Q ss_pred cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+.|++++|.++ .++...+..+++|++|++++|++++.+| ..+..+++|+.+++++|.+..
T Consensus 81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCC
T ss_pred CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCH--HHhhcCCCCCEEEeCCCCccC
Confidence 99999999998 5555468999999999999999999776 445678888899999998753
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=9.8e-17 Score=135.40 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=84.0
Q ss_pred CccccCCCCCCCCCCCC----ceeEEecC----------------CCCceEEEecCCCCCCccccccCccCCCCCCCCEE
Q 038485 7 VGYKDRKNGEGATDCCQ----WERVECSN----------------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESL 66 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~c~----~~gv~c~~----------------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L 66 (184)
..+.++.|.. +..||. |.++.|.. ....++.++++++.+.. +++..|..+++|++|
T Consensus 5 ~~~~l~~~~~-~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L 80 (597)
T 3oja_B 5 QRYNVKPRQP-EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELL 80 (597)
T ss_dssp ------CCCS-EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE---ECTHHHHHCCCCSEE
T ss_pred ccccccCCCC-CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC---cCHHHHccCCCCcEE
Confidence 3456788964 444443 66655431 02344556666665554 555555556666666
Q ss_pred eCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485 67 DLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG 146 (184)
Q Consensus 67 ~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls 146 (184)
++++|.+.+..+.. |..+++|+.|++++|.+.+..|..++.+++|++|++++|.++ .+|...+..+++|++|+++
T Consensus 81 ~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 81 NLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp ECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred ECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEee
Confidence 66666665554444 556666666666666665544555556666666666666665 4444334556666666666
Q ss_pred CCCCCccccCccccccccceeecccccccee
Q 038485 147 GNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 147 ~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+|.+.+.+| ..+..+++|..+++++|.+.
T Consensus 156 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 156 NNNLERIED--DTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp SSCCCBCCT--TTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCCCCh--hhhhcCCcCcEEECcCCCCC
Confidence 666655444 22234444455555555443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=6.2e-16 Score=125.90 Aligned_cols=136 Identities=26% Similarity=0.246 Sum_probs=117.6
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
..++.|++++|.+.. ..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..+..++
T Consensus 275 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 275 SGVKTCDLSKSKIFA---LLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp SCCCEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred cCceEEEecCccccc---cchhhcccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 578899999999886 77777899999999999999999877776 88999999999999999977788899999
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
+|+.|++++|.+++..+. .+..+++|++|++++|++++.++ ..+..+++|+.+++++|.++..
T Consensus 348 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCcccccChh-hccccccccEEECCCCccccCCH--hHhccCCcccEEEccCCCcccC
Confidence 999999999999844454 79999999999999999998665 3455788888999999988653
No 33
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=113.59 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=82.0
Q ss_pred CCCCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
..+.|.+..+.|.. ....+++|++++|.+.. ++ ..|..+++|++|++++|.++...+.. |..+
T Consensus 6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~---ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l 77 (193)
T 2wfh_A 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL---VP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNM 77 (193)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS---CC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch---hH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCC
Confidence 34555666666653 13456677777777664 44 44566777777777777777665555 6677
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
++|+.|++++|.++...+..|..+++|+.|++++|.++ .++...+..+++|+.+++++|++..
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 77777777777777555566667777777777777776 5555456667777777777776643
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=7.5e-16 Score=119.23 Aligned_cols=132 Identities=24% Similarity=0.278 Sum_probs=87.9
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.+++.|++++|.+.. ++.. ..+++|++|++++|.+.. .|.. +..+++|+.|++++|.++...+..|..++
T Consensus 55 ~~L~~L~L~~n~l~~---~~~~--~~l~~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~l~~N~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 55 TRLTQLNLDRAELTK---LQVD--GTLPVLGTLDLSHNQLQS-LPLL----GQTLPALTVLDVSFNRLTSLPLGALRGLG 124 (290)
T ss_dssp TTCCEEECTTSCCCE---EECC--SCCTTCCEEECCSSCCSS-CCCC----TTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred CCCCEEECCCCccCc---ccCC--CCCCcCCEEECCCCcCCc-Cchh----hccCCCCCEEECCCCcCcccCHHHHcCCC
Confidence 344444444444443 2221 445566666666666653 3333 66777888888888888755556677788
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+|+.|++++|.++ .++...+..+++|+.|++++|++++.++ ..+..+++|+.+++++|.+..
T Consensus 125 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECCCCcCCc
Confidence 8888888888887 5665467778888888888888876554 445567777888888887763
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=1.6e-15 Score=118.84 Aligned_cols=149 Identities=20% Similarity=0.314 Sum_probs=110.9
Q ss_pred CCCCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
..+.|.+..+.|.. ....++.|++++|.+.. +++..|..+++|++|++++|.+.+..|.. +..+
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 99 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGA----FAPL 99 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence 44567899999864 24578999999999997 77777899999999999999999887777 8899
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~ 168 (184)
++|++|++++|.+. .+|..+. ++|+.|++++|.++ .++...+..+++|+.|++++|.+.........+..+++|+.
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 99999999999887 4554433 67888888888877 55554677777888888887777542222234445555555
Q ss_pred cccccccee
Q 038485 169 YKLAGFFAI 177 (184)
Q Consensus 169 ~~l~~~~~~ 177 (184)
+++++|.+.
T Consensus 176 L~l~~n~l~ 184 (330)
T 1xku_A 176 IRIADTNIT 184 (330)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccc
Confidence 555555543
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=8.7e-16 Score=129.26 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=120.6
Q ss_pred ceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485 24 WERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML 94 (184)
Q Consensus 24 ~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L 94 (184)
...+.|.. .+..+++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L 86 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTL 86 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEE
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhh----ccCccccCee
Confidence 44577754 24678999999999997 77888899999999999999999887877 8999999999
Q ss_pred ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485 95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
++++|.+.+..|..++.+++|++|++++|.++ .++...+..+++|++|++++|.+.+..... +..+++|+.+++++|
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNN 163 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSS
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccC
Confidence 99999999777889999999999999999998 554347889999999999999998753221 123777777788888
Q ss_pred ceeeE
Q 038485 175 FAIWF 179 (184)
Q Consensus 175 ~~~~~ 179 (184)
.+...
T Consensus 164 ~l~~~ 168 (606)
T 3t6q_A 164 AIHYL 168 (606)
T ss_dssp CCCEE
T ss_pred ccccc
Confidence 77654
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=127.01 Aligned_cols=144 Identities=23% Similarity=0.278 Sum_probs=112.1
Q ss_pred ceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485 24 WERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML 94 (184)
Q Consensus 24 ~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L 94 (184)
|..+.|.. .+..++.|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L 85 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTL 85 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEE
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEE
Confidence 66788864 24578999999999987 77778889999999999999998877776 8889999999
Q ss_pred ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485 95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.+.+..+ ..+..+++|+.+++++|
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESC
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCC
Confidence 999998885555567888899999999998874 433378888888888888888877655 33445566666666666
Q ss_pred cee
Q 038485 175 FAI 177 (184)
Q Consensus 175 ~~~ 177 (184)
.+.
T Consensus 163 ~l~ 165 (477)
T 2id5_A 163 NLT 165 (477)
T ss_dssp CCS
T ss_pred cCc
Confidence 554
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.1e-15 Score=113.83 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=113.7
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
+.++.+++.+.. +|... .++++.|++++|.+.+..+.. |..+++|+.|++++|.++...|..|..+++|+
T Consensus 14 ~~v~c~~~~l~~---iP~~l---~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLTE---IPTNL---PETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCSS---CCSSC---CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CEEEcCCCCcCc---CCCcc---CcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 478999999987 76654 268999999999999877766 89999999999999999987799999999999
Q ss_pred EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
.|++++|.++ .++...+..+++|+.|++++|.+.+.++ ..+..+++|+.+++++|.+..+
T Consensus 84 ~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 84 SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEE
Confidence 9999999998 7887578899999999999999998766 4566788899999999988754
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.1e-15 Score=124.79 Aligned_cols=116 Identities=28% Similarity=0.329 Sum_probs=92.1
Q ss_pred ceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485 24 WERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML 94 (184)
Q Consensus 24 ~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L 94 (184)
|..+.|... +.+++.|++++|.+.. +++..|..+++|++|++++|.+.+..+.. |..+++|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEE
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCEE
Confidence 578888652 3578999999999987 77788889999999999999998877766 8888999999
Q ss_pred ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485 95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147 (184)
Q Consensus 95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~ 147 (184)
++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|+.|++++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence 99999988665666888888999999888887 55554555566666666655
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.9e-15 Score=115.91 Aligned_cols=142 Identities=23% Similarity=0.195 Sum_probs=116.8
Q ss_pred CceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485 23 QWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN 102 (184)
Q Consensus 23 ~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~ 102 (184)
...++.......++++|++++|.+.. ++. .+..+++|++|++++|.+++..+.. |..+++|+.|++++|.++
T Consensus 66 ~l~~~~~~~~l~~L~~L~Ls~N~l~~---l~~-~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 66 ELTKLQVDGTLPVLGTLDLSHNQLQS---LPL-LGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCCEEECCSCCTTCCEEECCSSCCSS---CCC-CTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCC
T ss_pred ccCcccCCCCCCcCCEEECCCCcCCc---Cch-hhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCC
Confidence 34444444457889999999999986 554 4588999999999999999877776 899999999999999999
Q ss_pred chhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 103 NSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 103 ~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
...+..+..+++|+.|++++|+++ .++...+..+++|++|++++|+++..+..... +..|..+++.+|.+
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~---~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG---SHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCCCSEEECCSCCB
T ss_pred ccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcc---cccCCeEEeCCCCc
Confidence 666677889999999999999998 78776788999999999999999976554444 44666677777765
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=6.7e-16 Score=131.63 Aligned_cols=148 Identities=24% Similarity=0.290 Sum_probs=113.6
Q ss_pred CCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCC
Q 038485 21 CCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNL 91 (184)
Q Consensus 21 ~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L 91 (184)
.|.+..+.|.. .+.++++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. +..+++|
T Consensus 3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L 75 (680)
T 1ziw_A 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPML 75 (680)
T ss_dssp -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTC
T ss_pred eeECCeeECCCCCccccccccCCCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCc
Confidence 34555566653 24578999999999987 77777888999999999999998887776 7888899
Q ss_pred cEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485 92 KMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL 171 (184)
Q Consensus 92 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l 171 (184)
+.|++++|.++...+..++.+++|++|++++|.++ .++...++.+++|++|++++|.+.+.++ ..+..+++|+.+++
T Consensus 76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLL 152 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEEC
T ss_pred CEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEc
Confidence 99999999888544456888889999999998887 5554478888889999998888887655 33345666666777
Q ss_pred cccceee
Q 038485 172 AGFFAIW 178 (184)
Q Consensus 172 ~~~~~~~ 178 (184)
++|.+.+
T Consensus 153 ~~n~l~~ 159 (680)
T 1ziw_A 153 SNNKIQA 159 (680)
T ss_dssp CSSCCCC
T ss_pred cCCcccc
Confidence 7766643
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=4.2e-16 Score=117.05 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=100.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCCCCCcEEECCC-CCCCchhHHhhc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSLT 110 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~ 110 (184)
+..+++|++++|.+.. +++..|..+++|++|++++|. +....+.. |..+++|+++++++ |.++...+..|.
T Consensus 30 ~~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CTTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CCcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 4578999999999987 777788899999999999997 77666555 88899999999998 888865566788
Q ss_pred cCCCCcEEeCCCccccCcccHhhhcCCCCCc---EEECCCC-CCCccccCcccccccccee-ecccccccee
Q 038485 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLE---ELDIGGN-KIDKFVVSKGTTNTIKNAN-LYKLAGFFAI 177 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~---~L~ls~N-~l~~~~~~~~~~~~l~~L~-~~~l~~~~~~ 177 (184)
.+++|+.|++++|.++ .+|. +..+++|+ .|++++| .+.+.++ ..+..+++|+ .+++++|.+.
T Consensus 103 ~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCc
Confidence 8888888888888877 4653 66666666 7777777 6666544 3344566666 6666666655
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-15 Score=111.73 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++ .+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+..+
T Consensus 65 l~~L~~L~l~~n~~~~---~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 65 AHNIKDLTINNIHATN---YN--PISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp CTTCSEEEEESCCCSC---CG--GGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred CCCCCEEEccCCCCCc---ch--hhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 5677888888886654 32 4577888888888888887655655 7888889999999988887778888888
Q ss_pred CCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 113 SSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 113 ~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|+.|++++|. ++ .++ .+..+++|+.|++++|++++.. .+..+++|+.+++++|.+.+
T Consensus 136 ~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 136 PKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred CCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence 889999998887 65 665 5888888999999988888743 34556777788888887754
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=123.96 Aligned_cols=116 Identities=26% Similarity=0.354 Sum_probs=89.3
Q ss_pred ceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485 24 WERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML 94 (184)
Q Consensus 24 ~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L 94 (184)
+..+.|... ...++.|++++|.+.. ++...|..+++|++|++++|.+....+.. |..+++|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEE
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEE
Confidence 668888652 4568899999999987 77777888999999999999888776666 8888888888
Q ss_pred ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485 95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147 (184)
Q Consensus 95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~ 147 (184)
++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCC
Confidence 88888888555556778888888888888876 55544566666666666665
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=9.2e-16 Score=107.13 Aligned_cols=130 Identities=23% Similarity=0.289 Sum_probs=105.1
Q ss_pred CCceEEEecCCCCCC-ccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 33 MSRVIALDLSDTYGG-EYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~-~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
..+++.|++++|.+. + .++ ..+..+++|++|++++|.+.+. .. +..+++|+.|++++|.+++..|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG--KLE-GLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTT--BCC-SCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChh--HHH-HHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHhhh
Confidence 467999999999998 2 144 4568899999999999999876 33 899999999999999999768888888
Q ss_pred CCCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccc
Q 038485 112 LSSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLA 172 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~ 172 (184)
+++|+++++++|.++ .++ ...+..+++|++|++++|++++.++. ...+..+++|+.++++
T Consensus 87 l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999998 443 13789999999999999999886541 1234455566655543
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1e-15 Score=121.77 Aligned_cols=135 Identities=23% Similarity=0.255 Sum_probs=114.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|++++|.+.. +++..|..+++|++|++++|.+....+.. |..+++|+.|++++|.+....|..|..+
T Consensus 63 l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccccCEEECCCCcCCc---cChhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCc
Confidence 6789999999999997 88888999999999999999999877766 8899999999999999997778899999
Q ss_pred CCCcEEeCCCccccCcccHhhh---cCCCCCcEEECCCCCCCccccCccccccccc--eeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKEL---DSLRDLEELDIGGNKIDKFVVSKGTTNTIKN--ANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~---~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~--L~~~~l~~~~~~ 177 (184)
++|+.|++++|.++ .+|...+ ..+++|+.|++++|++++.++ ..+..+.. +..+++.+|.+.
T Consensus 136 ~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH--HHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH--HHhhhccHhhcceEEecCCCcc
Confidence 99999999999998 7877455 578999999999999998654 33444544 356777887764
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=1.7e-15 Score=117.55 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=61.8
Q ss_pred ccCCCCCCCCEEeCCCCcCCC-cchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhh
Q 038485 55 SLFTPFQQLESLDLTDNKIAS-CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKE 133 (184)
Q Consensus 55 ~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~ 133 (184)
..+..+++|++|++++|.+.+ ..|.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .++...
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 218 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFP 218 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGG
T ss_pred hhcccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhh
Confidence 334445555555555555543 23333 555556666666666665444555555666666666666665 333324
Q ss_pred hcCCCCCcEEECCCCCCCccccCccccccc-cceeecccccccee
Q 038485 134 LDSLRDLEELDIGGNKIDKFVVSKGTTNTI-KNANLYKLAGFFAI 177 (184)
Q Consensus 134 ~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l-~~L~~~~l~~~~~~ 177 (184)
+..+++|+.|++++|++.+.++. .+..+ ++|..+++++|.+.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEE
T ss_pred ccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCee
Confidence 55566666666666666654442 22233 35555666666554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=7.6e-16 Score=120.29 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=43.8
Q ss_pred CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecc
Q 038485 91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK 170 (184)
Q Consensus 91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~ 170 (184)
|+.|++++|.+.+..|..+..+++|+.|++++|.+++.++ .+..+++|++|++++|++++.+| ..+..+++|+.++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLN 274 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCC--GGGGGCTTCCEEE
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCC--hHHhcCcCCCEEE
Confidence 4444444444443344444455555555555555543222 24555556666666666655444 2334555666666
Q ss_pred ccccceeeEE
Q 038485 171 LAGFFAIWFI 180 (184)
Q Consensus 171 l~~~~~~~~~ 180 (184)
+++|.+++.+
T Consensus 275 Ls~N~l~~~i 284 (313)
T 1ogq_A 275 VSFNNLCGEI 284 (313)
T ss_dssp CCSSEEEEEC
T ss_pred CcCCcccccC
Confidence 6666665543
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=2.2e-15 Score=118.30 Aligned_cols=146 Identities=27% Similarity=0.384 Sum_probs=113.7
Q ss_pred CCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCC
Q 038485 20 DCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN 90 (184)
Q Consensus 20 ~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 90 (184)
+.|.|..+.|.. ....++.|++++|.+.. +++..|..+++|++|++++|.+.+..|.. +..+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~ 103 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK 103 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence 447899999864 13578999999999987 77778899999999999999999887777 899999
Q ss_pred CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecc
Q 038485 91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK 170 (184)
Q Consensus 91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~ 170 (184)
|++|++++|.+. .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+.........+..+ +|+.++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 999999999998 5565544 78999999999998 666657899999999999999986422222333333 444445
Q ss_pred cccccee
Q 038485 171 LAGFFAI 177 (184)
Q Consensus 171 l~~~~~~ 177 (184)
+++|.+.
T Consensus 179 l~~n~l~ 185 (332)
T 2ft3_A 179 ISEAKLT 185 (332)
T ss_dssp CCSSBCS
T ss_pred CcCCCCC
Confidence 4554443
No 50
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=108.89 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=108.7
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
+.++++++.+.. ++... ..++++|++++|.++. .|.. +..+++|+.|++++|.++...+..|..+++|+
T Consensus 13 ~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~n~i~~-ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKV---LPKGI---PRDVTELYLDGNQFTL-VPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCS-CCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCCCCCc---CCCCC---CCCCCEEECCCCcCch-hHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 578999999987 77554 3689999999999984 4555 89999999999999999977778899999999
Q ss_pred EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
.|++++|.++ .++...+..+++|+.|++++|+++..++ ..+..+++|..+++++|.+.
T Consensus 82 ~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence 9999999998 6665579999999999999999998665 44567888888899998874
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=4.6e-15 Score=106.49 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=109.1
Q ss_pred eEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485 36 VIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115 (184)
Q Consensus 36 l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 115 (184)
.+.++++++.+.. ++... .++++.|++++|.+.+..+.. +..+++|++|++++|.++...+..+..+++|
T Consensus 9 ~~~l~~~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLTS---VPTGI---PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp TTEEECCSSCCSS---CCTTC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEEecCCCCcc---CCCCC---CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCcc
Confidence 4678999999987 66543 378999999999999776665 7899999999999999996656668899999
Q ss_pred cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+.|++++|.++ .++...+..+++|+.|++++|++++.++ ..+..+++|+.+++++|.+..
T Consensus 79 ~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeec
Confidence 99999999998 6666468899999999999999997665 444567888888999998754
No 52
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=9.3e-16 Score=112.83 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=101.5
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++...|..+++|++|++++|.+....+.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 51 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 123 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLSTNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKL 123 (208)
T ss_dssp CTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCcEEECCCCccCc---cChhhcCCCCCcCEEECCCCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccC
Confidence 6789999999999997 88888899999999999999999776665 7899999999999999996666678899
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
++|+.|++++|.++ .++...+..+++|+.+++++|++.+..+
T Consensus 124 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 124 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999999999998 6666468899999999999998876544
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=2.1e-15 Score=115.47 Aligned_cols=137 Identities=23% Similarity=0.255 Sum_probs=100.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+....+..+..+
T Consensus 51 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 123 (276)
T 2z62_A 51 FPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHL 123 (276)
T ss_dssp CTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred ccCCcEEECCCCcCCc---cCHHHccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcccC
Confidence 5678899999998886 77777788889999999999888776666 7888888888888888886555567788
Q ss_pred CCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccC-cccccccccee-ecccccccee
Q 038485 113 SSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNAN-LYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~-~~~l~~~~~~ 177 (184)
++|++|++++|.+++ .+|. .+..+++|++|++++|++++.++. ...+..++.+. .+++++|.+.
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 888888888888873 2455 788888888888888888876542 22223333222 3444555443
No 54
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=110.96 Aligned_cols=115 Identities=21% Similarity=0.301 Sum_probs=103.7
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
...+++.|++++|.+.. +++..|..+++|++|++++|.+.+..+.. |..+++|++|++++|.+++..|..+..
T Consensus 55 ~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 55 KLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp GCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred cCCCCCEEECCCCcCCE---ECHHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCC
Confidence 36789999999999997 88888899999999999999999888877 899999999999999999877889999
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
+++|+.|++++|.++ .++...+..+++|+.|++++|++....
T Consensus 128 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 128 LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 999999999999999 453348999999999999999987643
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=124.37 Aligned_cols=137 Identities=26% Similarity=0.295 Sum_probs=101.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+..++.|++++|.+.. +++..|..+++|++|++++|.+.+..+.. |..+++|++|++++|.+....|..+..+
T Consensus 27 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CSSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 4567888888888876 66667788888888888888887766665 7788888888888888876666778888
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc-ccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF-VVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~-~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|++|++++|.++ .++...++.+++|++|++++|.+.+. .| ..+..+++|+.+++++|.+...
T Consensus 100 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECTTSCCCEE
T ss_pred cccccccccccccc-cCCCccccccccccEEecCCCccceecCh--hhhcccCCCCEEeCcCCcccee
Confidence 88888888888877 55543577788888888888887763 23 3345566777777777766543
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=132.70 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=117.4
Q ss_pred CCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc-hhhhhhhhcCCCCCcEEECCCC
Q 038485 21 CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV-ENEGIERLSRLNNLKMLNLSGN 99 (184)
Q Consensus 21 ~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~~l~~L~~L~l~~n 99 (184)
.|.|.+|.+ .+.++++|+|++|.+.. +.+..|..+++|++|++++|...+.. |.. |..+++|+.|++++|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGSS 83 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTTC
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCCC
Confidence 455666666 37889999999999987 77778899999999999998665554 555 888999999999999
Q ss_pred CCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 100 SFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 100 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
.+.+..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+.+..+. ..+..+++|+.+++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-hhHhhCCCCCEEECCCCcCCe
Confidence 99877788899999999999999998855554 1378889999999999998876432 345567777777888877754
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.5e-15 Score=108.13 Aligned_cols=136 Identities=23% Similarity=0.220 Sum_probs=110.5
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+.++++|++++|.+.. ..++. .+..+++|++|++++|.+... .. +..+++|++|++++|.+.+..|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~-~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-GKIEG-LTAEFVNLEFLSLINVGLISV--SN----LPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBT-TBCSS-CCGGGGGCCEEEEESSCCCCC--SS----CCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCCCCh-hhHHH-HHHhCCCCCEEeCcCCCCCCh--hh----hccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 5789999999999981 01543 368899999999999999876 33 8999999999999999997678888889
Q ss_pred CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~~~~~~ 177 (184)
++|+.|++++|.++ .++. ..+..+++|++|++++|++++.++. ...+..+++|+.++++.|.+.
T Consensus 95 ~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999998 5542 3789999999999999999876541 124556777777777777664
No 58
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=9.3e-15 Score=109.32 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=109.4
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
+.++.+++.+.. +|... .++|++|++++|.+.+..+.. |..+++|+.|++++|.+....+..+..+++|+
T Consensus 22 ~~v~c~~~~l~~---ip~~~---~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 22 TTVDCRSKRHAS---VPAGI---PTNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEeEccCCCcCc---cCCCC---CCCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 568999999987 77644 388999999999999988877 89999999999999999855556788999999
Q ss_pred EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
.|++++|.++ .++...+..+++|+.|++++|+++..+.. +..+++|..+++++|.+...
T Consensus 92 ~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 92 VLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRG---IERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTT---GGGCTTCSEEECCSSCCCCC
T ss_pred EEECCCCcCC-ccChhHhCcchhhCeEeccCCcccccCcc---cccCCCCCEEECCCCcCCcc
Confidence 9999999998 67665688999999999999999965433 35678888888999988754
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.7e-15 Score=108.35 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=110.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++ .+..+++|++|++++|.+... + . +..+++|++|++++|.+++..+..+..+
T Consensus 43 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n~~~~~-~-~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 43 MNSLTYITLANINVTD---LT--GIEYAHNIKDLTINNIHATNY-N-P----ISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHTCCEEEEESSCCSC---CT--TGGGCTTCSEEEEESCCCSCC-G-G----GTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred cCCccEEeccCCCccC---hH--HHhcCCCCCEEEccCCCCCcc-h-h----hhcCCCCCEEEeECCccCcccChhhcCC
Confidence 4678999999999986 55 368899999999999977643 2 3 8899999999999999997788889999
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-CCccccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|+.|++++|.+++..+. .+..+++|++|++++|+ +... + .+..+++|+.+++++|.+.++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-~---~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-M---PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-G---GGGGCSSCCEEECTTBCCCCC
T ss_pred CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-H---hhcCCCCCCEEECCCCCCcCh
Confidence 9999999999999854554 79999999999999998 7654 3 356678888888899988764
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=9.6e-15 Score=118.88 Aligned_cols=137 Identities=21% Similarity=0.256 Sum_probs=79.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.++...+.. |..+++|+.|++++|.+....+..+..+
T Consensus 87 l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp CSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhhhC
Confidence 4567777777777775 66666677777777777777777655544 6667777777777777664444445555
Q ss_pred CCCcEEeCCCccccCcccHhhhcCC----------------------CCCcEEECCCCCCCccccCccccccccceeecc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSL----------------------RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK 170 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~----------------------~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~ 170 (184)
++|+.|++++|...+.++...+..+ ++|+.|++++|++++.++ ..+..+++|+.++
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh--hhhccCccCCEEE
Confidence 5555555555322223333334444 445555555555554433 2334455555555
Q ss_pred ccccceee
Q 038485 171 LAGFFAIW 178 (184)
Q Consensus 171 l~~~~~~~ 178 (184)
+++|.+..
T Consensus 238 L~~n~l~~ 245 (440)
T 3zyj_A 238 MIQSQIQV 245 (440)
T ss_dssp CTTCCCCE
T ss_pred CCCCceeE
Confidence 55555543
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=6.7e-15 Score=123.86 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
...++++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|++|++++|.+....+..++.
T Consensus 54 ~l~~L~~L~Ls~n~l~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIET---IEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp TCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCCCCTTS----STTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred CCccCcEEeCCCCcccc---cCHHHhhchhhcCEeECCCCcccccChhh----cCCcccCCEEEccCCccccccccccCC
Confidence 36789999999999987 87888899999999999999999887877 899999999999999998666678999
Q ss_pred CCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccC-ccccccccc-eeeccccccceee
Q 038485 112 LSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKN-ANLYKLAGFFAIW 178 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~-L~~~~l~~~~~~~ 178 (184)
+++|++|++++|.+++ .+|. .++.+++|++|++++|++++.++. ...+..++. +..+++++|.+..
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred CCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence 9999999999999974 4676 899999999999999999987663 222333322 2356666666543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=1.3e-14 Score=118.57 Aligned_cols=113 Identities=20% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.+....+.. |..+++|++|++++|.+....+..+..+
T Consensus 98 l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCccCC---cChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 5678888888888876 66677777888888888888887666655 6777788888888877774444455555
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
++|+.|++++|...+.++...+..+++|+.|++++|.+++
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 5555555555322224443344445555555555554443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=113.68 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=78.0
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc--hhhhhhhh--cCCCCCcEEECCCCCCCc--hhH-
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV--ENEGIERL--SRLNNLKMLNLSGNSFNN--SIL- 106 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~~~--~~l~~L~~L~l~~n~~~~--~~p- 106 (184)
.++++|++++|.+.. +++..|..+++|++|++++|.+.+.. +.. + ..+++|++|++++|.+++ ..+
T Consensus 149 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISA----LCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCC---CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH----SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCcEEEeeCCCCcc---chHHHhccCCCCCEEECCCCCcCcchHHHHH----HHhccCCCCCEEECCCCcCcchHHHHH
Confidence 566666666666665 55556667777777777777665431 222 3 566777777777777762 112
Q ss_pred HhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 107 ~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
..+..+++|+.|++++|.+++..+...+..+++|++|++++|.++..+.... ++|+.+++++|++++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-----AKLSVLDLSYNRLDR 288 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-----SEEEEEECCSSCCCS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-----CCceEEECCCCCCCC
Confidence 2334566777777777777644432244556667777777777664322111 455566666666654
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=121.38 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=76.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +.+..|..+++|++|++++|.+....+.. |..+++|++|++++|.+....+..+..+
T Consensus 55 l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 55 FPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcccc
Confidence 4566777777776665 55555666666666666666666554443 5566666666666666665555556666
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
++|+.|++++|.++ .++...+..+++|++|++++|.+.+.++ ..+..+++|+.+++++|.+
T Consensus 128 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp TTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCC
T ss_pred ccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcC
Confidence 66666666666665 3332245555666666666665554332 2223334444444444443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=9e-15 Score=120.78 Aligned_cols=143 Identities=21% Similarity=0.154 Sum_probs=101.7
Q ss_pred CCCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc-CCCCCcEEECCC
Q 038485 20 DCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS-RLNNLKMLNLSG 98 (184)
Q Consensus 20 ~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~-~l~~L~~L~l~~ 98 (184)
..|.+.++.+.. .+.++.|++++|.+.. +.+..+..+++|++|++++|.+++..|.. +. .+++|+.|++++
T Consensus 107 ~~N~l~~~~~~~-l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 107 ANNNISRVSCSR-GQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQY 178 (487)
T ss_dssp CSSCCCCEEECC-CSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTT
T ss_pred cCCcCCCCCccc-cCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCC
Confidence 344556666654 5677888888888776 55556677788888888888888766665 54 678888888888
Q ss_pred CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
|.+++. | ....+++|+.|++++|.++ .+|. .+..+++|+.|++++|.+++.++. +..+++|..+++++|.+.
T Consensus 179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~---l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCEECTT---CCCCTTCCEEECTTCCBC
T ss_pred Cccccc-c-ccccCCCCCEEECCCCCCC-CCCH-hHcCCCCccEEEecCCcCcccchh---hccCCCCCEEEcCCCCCc
Confidence 888744 2 2345778888888888887 5665 577788888888888888875443 344666677777777765
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=2.3e-14 Score=114.68 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=99.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+..+
T Consensus 68 l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence 4679999999999987 78778899999999999999999887776 8899999999999999994434446889
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
++|++|++++|.++ .++...+..+++|++|++++|++++.
T Consensus 141 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999999999998 55554799999999999999999875
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=9.1e-15 Score=122.91 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=106.6
Q ss_pred ecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEe
Q 038485 40 DLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119 (184)
Q Consensus 40 ~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 119 (184)
+=++..+++ +|... -..+++|++++|.++...+.. |..+++|++|++++|.++...+..|..+++|++|+
T Consensus 37 ~c~~~~l~~---vP~~l---p~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 37 QCMELNFYK---IPDNL---PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp ECTTSCCSS---CCSSS---CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ECCCCCcCc---cCCCC---CcCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 444445555 66443 247999999999999887777 99999999999999999976677899999999999
Q ss_pred CCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 120 l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
+++|+++ .++.+.|..+++|++|++++|++++.++ ..+..+++|+.+++++|.+..+
T Consensus 107 Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 107 LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp CTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccC
Confidence 9999998 7877689999999999999999998665 4466788899999999988654
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=6.2e-15 Score=115.90 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=69.1
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.++++|++++|.+.. ++.. +..+++|++|++++|.+.+. |.. +..+++|+.|++++|.+.+..|..++.++
T Consensus 183 ~~L~~L~L~~n~l~~---lp~~-l~~l~~L~~L~L~~N~l~~l-~~~----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS---LPAS-IANLQNLKSLKIRNSPLSAL-GPA----IHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp TTCCEEEEEEECCCC---CCGG-GGGCTTCCEEEEESSCCCCC-CGG----GGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred CCCCEEECcCCCcCc---chHh-hcCCCCCCEEEccCCCCCcC-chh----hccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 445555555555543 3322 35555666666666655543 222 55556666666666555555555555566
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
+|+.|++++|.+.+.+|. .+..+++|++|++++|++.+.+| ..+..+++|..+++..+
T Consensus 254 ~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCHH
Confidence 666666666555545554 45556666666666665555555 22334444444444443
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2.6e-14 Score=120.56 Aligned_cols=114 Identities=19% Similarity=0.243 Sum_probs=100.1
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|+.|++++|.+....+..|+.+
T Consensus 74 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 74 FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 4689999999999987 77778899999999999999999888776 8899999999999999995545557899
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
++|++|++++|.+++ ++...+..+++|++|++++|.+.+..
T Consensus 147 ~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 147 PKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC
Confidence 999999999999984 54447999999999999999998753
No 70
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.5e-14 Score=103.45 Aligned_cols=109 Identities=24% Similarity=0.247 Sum_probs=92.8
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
+++++++|.+.. ++... ..++++|++++|.+++..|.. |..+++|+.|++++|.+++..+..|..+++|+
T Consensus 12 ~~l~~s~n~l~~---ip~~~---~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 12 TTVDCSGKSLAS---VPTGI---PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEeCCCCcCc---cCccC---CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 467788888886 66554 378999999999999888877 89999999999999999966666788999999
Q ss_pred EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccC
Q 038485 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS 156 (184)
Q Consensus 117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~ 156 (184)
+|++++|.++ .++...+..+++|+.|++++|++....+.
T Consensus 82 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 82 QLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred EEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9999999998 67665689999999999999999876543
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.9e-14 Score=110.32 Aligned_cols=104 Identities=29% Similarity=0.401 Sum_probs=48.8
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++ +..+++|++|++++|.+.+. + . +..+++|+.|++++|.+.+. +.+..+
T Consensus 67 l~~L~~L~L~~n~l~~---~~~--l~~l~~L~~L~l~~n~l~~~-~-~----l~~l~~L~~L~L~~n~i~~~--~~l~~l 133 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDL-S-S----LKDLKKLKSLSLEHNGISDI--NGLVHL 133 (291)
T ss_dssp CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCG-G-G----GTTCTTCCEEECTTSCCCCC--GGGGGC
T ss_pred CCCCCEEEccCCccCC---Ccc--cccCCCCCEEECCCCcCCCC-h-h----hccCCCCCEEECCCCcCCCC--hhhcCC
Confidence 3455566666665554 332 34555555555555555431 1 1 44455555555555554421 234444
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
++|+.|++++|.++ .++ .+..+++|++|++++|++.+
T Consensus 134 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 134 PQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp TTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCC
T ss_pred CCCCEEEccCCcCC-cch--hhccCCCCCEEEccCCcccc
Confidence 44444444444444 221 34444444444444444444
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=2.5e-14 Score=111.72 Aligned_cols=140 Identities=21% Similarity=0.167 Sum_probs=101.0
Q ss_pred CceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh-cCCCCCcEEECCCCCC
Q 038485 23 QWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSF 101 (184)
Q Consensus 23 ~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~-~~l~~L~~L~l~~n~~ 101 (184)
...++.+.. ...+++|++++|.+.. +++..+..+++|++|++++|.+.+..+.. + ..+++|+.|++++|.+
T Consensus 110 ~l~~~~~~~-~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 110 NISRVSCSR-GQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSEEEECC-CSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCC
T ss_pred ccCCcCccc-cCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcC
Confidence 344444443 4567888888888776 66666677888888888888888766654 4 3678888888888888
Q ss_pred CchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 102 NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 102 ~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+.. + ....+++|+.|++++|.++ .++. .+..+++|+.|++++|++++.+.. +..+++|+.+++++|.+.
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~~l~~~---~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 182 YDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCEECTT---CCCCTTCCEEECTTCCCB
T ss_pred ccc-c-cccccccCCEEECCCCcCC-cchh-hhcccCcccEEECcCCcccchhhH---hhcCCCCCEEEccCCCcc
Confidence 743 2 3335788888888888887 6666 577888888888888888865432 345677777788888775
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=5.2e-14 Score=109.68 Aligned_cols=103 Identities=27% Similarity=0.383 Sum_probs=43.3
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.+++.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 85 ~~L~~L~L~~n~l~~---~~--~~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~ 151 (308)
T 1h6u_A 85 TKITELELSGNPLKN---VS--AIAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLT 151 (308)
T ss_dssp CSCCEEECCSCCCSC---CG--GGTTCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred CCCCEEEccCCcCCC---ch--hhcCCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCC
Confidence 344444444444443 21 23444444444444444443211 3444444444444444442211 34444
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
+|+.|++++|.++ .++. +..+++|+.|++++|.+++
T Consensus 152 ~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 152 NLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCc
Confidence 4444444444444 2221 3444444444444444443
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=119.83 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=113.9
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
...++++|++++|.+.. +++..|..+++|++|++++|.+....+.. |..+++|++|++++|.+....+..++.
T Consensus 50 ~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 122 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH 122 (570)
T ss_dssp TCSSCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred CCCCceEEECCCCcCCc---cCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccc
Confidence 36789999999999987 88888899999999999999998877776 899999999999999998554446889
Q ss_pred CCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccce----eeccccccceeeE
Q 038485 112 LSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA----NLYKLAGFFAIWF 179 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L----~~~~l~~~~~~~~ 179 (184)
+++|++|++++|.+++ .+|. .+..+++|++|++++|.+.+.++ ..+..+++| ..+++++|.+...
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecH--HHccchhccchhhhhcccCCCCceec
Confidence 9999999999999974 3566 79999999999999999988655 333445555 5667777776543
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.5e-14 Score=103.88 Aligned_cols=133 Identities=21% Similarity=0.155 Sum_probs=104.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++ ......++|++|++++|.+.+. +. +..+++|++|++++|.+++..+..+..+
T Consensus 18 ~~~L~~L~l~~n~l~~---i~-~~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCceEEEeeCCCCch---hH-HhhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhhcC
Confidence 5689999999999986 43 2323344999999999999875 33 8999999999999999995444555889
Q ss_pred CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC-ccccccccceeeccccccce
Q 038485 113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~~~~~ 176 (184)
++|+.|++++|.++ .++. ..+..+++|+.|++++|++...+.. ...+..+.+|+.++++.|.+
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999999997 6663 3588899999999999999865432 11345667777777777654
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=113.33 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCC-----CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch--h
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPF-----QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS--I 105 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~--~ 105 (184)
..++++|++++|.+.. . +..+..+ ++|++|++++|.+.+..+.. +..+++|++|++++|.+.+. .
T Consensus 120 l~~L~~L~Ls~N~l~~---~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 120 GPDLNILNLRNVSWAT---R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SCCCSEEEEESCBCSS---S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHHH
T ss_pred CCCccEEEccCCCCcc---h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchHH
Confidence 4567777777777765 3 2333333 67777777777777766665 78888889999988887754 3
Q ss_pred HHhh--ccCCCCcEEeCCCccccC--cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 106 LSSL--THLSSLRSLNLFWNRLEG--SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 106 p~~~--~~l~~L~~L~l~~n~~~~--~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
|..+ ..+++|+.|++++|.+++ .++...+..+++|+.|++++|++.+.+| ...+..+++|+.+++++|.++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhhcCCCCEEECCCCccC
Confidence 4455 778889999999988872 2223345577889999999999888653 223345677888888888876
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=114.82 Aligned_cols=134 Identities=24% Similarity=0.314 Sum_probs=106.1
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHH--hh
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--SL 109 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~~ 109 (184)
...++++|++++|.+.. +++..|..+++|++|++++|.++...+.. +..+++|++|++++|.+. .+|. .+
T Consensus 74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~~ 145 (353)
T 2z80_A 74 RCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYK-TLGETSLF 145 (353)
T ss_dssp TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred cCCCCCEEECCCCccCc---cCHhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCc-ccCchhhh
Confidence 36789999999999987 77777899999999999999999877665 788999999999999998 4444 68
Q ss_pred ccCCCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 110 THLSSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
..+++|+.|++++|. +. .++...+..+++|++|++++|.+.+..|. .+..+++|+.+++++|.+
T Consensus 146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK--SLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSCS
T ss_pred ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH--HHhccccCCeecCCCCcc
Confidence 889999999999984 65 56554788899999999999999887552 333444555555554443
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=1.7e-14 Score=122.69 Aligned_cols=149 Identities=11% Similarity=0.143 Sum_probs=121.4
Q ss_pred CCCceeEEe-cCCCCceEEEecCCCCCCcc-----cc---------ccCccCC--CCCCCCEEeCCCCcCCCcchhhhhh
Q 038485 21 CCQWERVEC-SNTMSRVIALDLSDTYGGEY-----WY---------LNASLFT--PFQQLESLDLTDNKIASCVENEGIE 83 (184)
Q Consensus 21 ~c~~~gv~c-~~~~~~l~~L~l~~n~l~~~-----~~---------~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~~~~ 83 (184)
.+...|+.- .....++++|++++|.+.+. |. ..+..+. .+++|++|++++|.+.+..|..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~--- 268 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--- 268 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT---
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH---
Confidence 445666332 22367899999999998861 00 0334456 8999999999999999999987
Q ss_pred hhcCCCCCcEEECCCCC-CCc-hhHHhhccC------CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccc
Q 038485 84 RLSRLNNLKMLNLSGNS-FNN-SILSSLTHL------SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 84 ~~~~l~~L~~L~l~~n~-~~~-~~p~~~~~l------~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
+..+++|+.|++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|. +.++.+++|++|++++|.+.|.+
T Consensus 269 -l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 269 -LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp -TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred -HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9999999999999998 998 889988876 99999999999998 7874 36999999999999999999777
Q ss_pred cCccccccccceeecccccccee
Q 038485 155 VSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 155 ~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
| .+..+++|+.+++++|.+.
T Consensus 347 p---~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 347 P---AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp C---CCEEEEEESEEECCSSEEE
T ss_pred h---hhCCCCCCCEEECCCCccc
Confidence 7 4556777888888888876
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=5.8e-14 Score=109.39 Aligned_cols=126 Identities=21% Similarity=0.358 Sum_probs=102.5
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++ +..+++|++|++++|.+.+. + . +..+++|+.|++++|.+.+ .+ .+..+
T Consensus 62 l~~L~~L~L~~n~i~~---~~~--~~~l~~L~~L~L~~n~l~~~-~-~----~~~l~~L~~L~l~~n~l~~-~~-~l~~l 128 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNV-S-A----IAGLQSIKTLDLTSTQITD-VT-PLAGL 128 (308)
T ss_dssp CTTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCC-G-G----GTTCTTCCEEECTTSCCCC-CG-GGTTC
T ss_pred cCCCCEEEccCCcCCC---Chh--HccCCCCCEEEccCCcCCCc-h-h----hcCCCCCCEEECCCCCCCC-ch-hhcCC
Confidence 6789999999999886 554 68899999999999998864 3 3 8899999999999999985 34 38889
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|+.|++++|.++ .++. +..+++|+.|++++|.+++.++ +..+++|+.+++++|.+..
T Consensus 129 ~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 129 SNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCc
Confidence 99999999999998 5653 8889999999999999987554 4456666777777776654
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=1.1e-14 Score=124.14 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=100.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +.+..|..+++|++|++++|.+....+.. |..+++|++|++++|.+.+..|..++.+
T Consensus 48 l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GTTCSEEECCSSCCCC---CCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CCcCcEEECCCCccCc---cCHHHHhcccCcCEEECCCCccCccChhh----hccCCCCCEEECCCCccCccChhHcccc
Confidence 4678888888888876 66666777888888888888887665555 7788888888888888876556677888
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|++|++++|.+++..+. .+..+++|++|++++|.+++.++.......+++|+.+++++|.+..
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp TTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 8888888888888744443 6777888888888888887765533222234667777777776654
No 81
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.6e-14 Score=101.93 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=94.4
Q ss_pred EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485 37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116 (184)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 116 (184)
+.++++++.+.. +|... ..+|++|++++|.+.+..|.. |..+++|+.|++++|.+++..+..|..+++|+
T Consensus 15 ~~l~~~~n~l~~---iP~~~---~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLAS---VPAGI---PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCCCCc---cCCCc---CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 578999999987 77654 278999999999999888877 89999999999999999965555678999999
Q ss_pred EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc
Q 038485 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157 (184)
Q Consensus 117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 157 (184)
.|++++|.++ .++...+..+++|++|++++|++.......
T Consensus 85 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 85 QLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred EEECCCCccc-eeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 9999999998 677656999999999999999998765433
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=1.4e-14 Score=120.42 Aligned_cols=118 Identities=25% Similarity=0.357 Sum_probs=103.8
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLT 110 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~ 110 (184)
...++++|++++|.+.. +++..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+ ..|..++
T Consensus 48 ~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 48 ACANLQVLILKSSRINT---IEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp SCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred cCCcccEEECCCCCcCc---cChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhh
Confidence 46789999999999997 78788899999999999999999888877 8999999999999999985 3467788
Q ss_pred cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccC
Q 038485 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS 156 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~ 156 (184)
.+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|.
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 9999999999999854577755799999999999999999986653
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=4.5e-14 Score=116.84 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=92.0
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.++++|++++|.+.. +++..|..+++|++|++++|.+.+..|.. |..+++|++|++++|.++ .+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISE---LWTSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCC---CCHHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--CCC
T ss_pred ccccEEECCCCcccc---cChhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--ccC
Confidence 577888888888776 66566677888888888888887766666 778888888888888887 45554 677
Q ss_pred CCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccce--eeccccccce
Q 038485 114 SLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA--NLYKLAGFFA 176 (184)
Q Consensus 114 ~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L--~~~~l~~~~~ 176 (184)
+|++|++++|.+++ .+|. .++.+++|++|++++|.+.+. .+..+++| +.+++++|.+
T Consensus 91 ~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred CccEEeccCCccccccchh-hhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence 88888888888774 2444 677888888888888887762 23334444 6677777665
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=1.1e-13 Score=116.47 Aligned_cols=136 Identities=24% Similarity=0.293 Sum_probs=92.2
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
.++.|++++|.+.. +++..|..+++|++|++++|.+.. .|.. +..+++|++|++++|.+.+..|..+..+++
T Consensus 255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~-lp~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLSE-LPSG----LVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCSC-CCSS----CCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccCC-CChh----hcccccCCEEECccCCcCcCchhhhhccCc
Confidence 67788888887776 666667777888888888887773 4444 677778888888888777666667777777
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
|+++++++|.+.+.++...+..+++|++|++++|.+.+.......+..+++|+.+++++|.+..
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 7777777777665565545667777777777777776654222334445555555555555543
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.1e-13 Score=105.60 Aligned_cols=126 Identities=29% Similarity=0.380 Sum_probs=96.2
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|++++|.+.. +++ +..+++|++|++++|.+.+..+ +.. ++|+.|++++|.+++ . +.+..+
T Consensus 62 l~~L~~L~L~~N~i~~---~~~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~-~-~~l~~l 127 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD---LSP--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRD-T-DSLIHL 127 (263)
T ss_dssp CTTCCEEECCSSCCCC---CGG--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSB-S-GGGTTC
T ss_pred CCCCCEEECCCCccCC---Chh--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCC-C-hhhcCc
Confidence 5678888888888876 444 6778888888888888876432 334 788888888888874 3 357888
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|+.|++++|+++ .++ .+..+++|+.|++++|++++. ..+..+++|+.+++++|.+...
T Consensus 128 ~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 128 KNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 88999999999887 554 578888999999999998875 3445677777888888877643
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=5e-14 Score=110.38 Aligned_cols=133 Identities=24% Similarity=0.191 Sum_probs=105.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|++++|.+.. ++...+ ++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 170 l~~L~~L~l~~n~l~~---l~~~~~---~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 170 MKKLSYIRIADTNITT---IPQGLP---PSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTCCEEECCSSCCCS---CCSSCC---TTCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred CCCcCEEECCCCcccc---CCcccc---ccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeChhhccCC
Confidence 5678999999998886 655442 78999999999998776766 8889999999999999987667778888
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccc----ccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTT----NTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~----~~l~~L~~~~l~~~~~~ 177 (184)
++|+.|++++|.++ .+|. .+..+++|+.|++++|++++.++....- .....+..+++.+|.+.
T Consensus 240 ~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCEEECCCCcCc-cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 99999999999998 7876 6888899999999999998765533211 12355667777788774
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.53 E-value=1e-13 Score=109.08 Aligned_cols=127 Identities=26% Similarity=0.353 Sum_probs=99.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++ +..+++|++|++++|.+... + . +..+++|+.+++++|.+.+. +.+..+
T Consensus 220 ~~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD---LSP--LANLSQLTWLEIGTNQISDI-N-A----VKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCC-G-G----GTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred CCcCCEEEccCCccCC---Ccc--hhcCCCCCEEECCCCccCCC-h-h----HhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 5678888888888876 443 67888899999999888764 2 2 78889999999999988853 457788
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
++|+.|++++|.+++ .+...+..+++|+.|++++|++++.+| +..+++|+.+++++|.++
T Consensus 287 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 999999999999884 444478889999999999999988765 456777888888888774
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=1.4e-13 Score=106.52 Aligned_cols=129 Identities=24% Similarity=0.308 Sum_probs=108.8
Q ss_pred cCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485 30 SNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109 (184)
Q Consensus 30 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 109 (184)
.....+++.|++++|.+.. ++. +..+++|++|++++|.+.+. + . +..+++|+.|++++|.+++. ..+
T Consensus 86 l~~l~~L~~L~l~~n~l~~---~~~--l~~l~~L~~L~L~~n~i~~~-~-~----l~~l~~L~~L~l~~n~l~~~--~~l 152 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD---LSS--LKDLKKLKSLSLEHNGISDI-N-G----LVHLPQLESLYLGNNKITDI--TVL 152 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC---GGG--GTTCTTCCEEECTTSCCCCC-G-G----GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred cccCCCCCEEECCCCcCCC---Chh--hccCCCCCEEECCCCcCCCC-h-h----hcCCCCCCEEEccCCcCCcc--hhh
Confidence 3347889999999999986 443 68899999999999999875 3 3 78999999999999999854 678
Q ss_pred ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
..+++|+.|++++|.++ .++. +..+++|+.|++++|.+++.+ .+..+++|+.+++++|.+..
T Consensus 153 ~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~L~~N~i~~l~----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEEccCCccc-cchh--hcCCCccCEEECCCCcCCCCh----hhccCCCCCEEECcCCcccC
Confidence 89999999999999998 5553 889999999999999998752 25667888888888888764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=110.95 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc--chhhhhhhhcCCCCCcEEECCCCCCCchhHH---
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC--VENEGIERLSRLNNLKMLNLSGNSFNNSILS--- 107 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--- 107 (184)
..++++|++++|.+.. +++..|..+++|++|++++|.+.+. .+.. ..+..+++|++|++++|.++ ..+.
T Consensus 144 ~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA---FSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCA 217 (310)
T ss_dssp CSCCCEEEEECCSSCC---CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHH
T ss_pred ccCCCEEEeeCCCcch---hhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHH
Confidence 4577778888887765 6666677788888888888876542 1111 00246677777777777776 2222
Q ss_pred -hhccCCCCcEEeCCCccccCcccHhhhcCC---CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 108 -SLTHLSSLRSLNLFWNRLEGSIDVKELDSL---RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 108 -~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~---~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
.+..+++|++|++++|.+++..|. .+..+ ++|++|++++|+++..+... + ++|+.+++++|++++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~---~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGL--P---AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCC--C---SCCSCEECCSCCCCS
T ss_pred HHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhhhh--c---CCCCEEECCCCcCCC
Confidence 245667777777777777744444 44444 57777777777777443211 1 455666666666654
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=5.4e-14 Score=110.33 Aligned_cols=107 Identities=28% Similarity=0.312 Sum_probs=53.1
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
+++.|++++|.+.. ++...+ ++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++
T Consensus 173 ~L~~L~l~~n~l~~---l~~~~~---~~L~~L~l~~n~i~~~~~~~----l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 173 KLNYLRISEAKLTG---IPKDLP---ETLNELHLDHNKIQAIELED----LLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp CCSCCBCCSSBCSS---CCSSSC---SSCSCCBCCSSCCCCCCTTS----STTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred ccCEEECcCCCCCc---cCcccc---CCCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 44555555555554 333221 34555555555555444333 445555555555555555443444555555
Q ss_pred CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
|+.|++++|.++ .+|. .+..+++|+.|++++|++++.
T Consensus 243 L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBC
T ss_pred CCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCcc
Confidence 555555555554 4444 345555555555555555543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.1e-14 Score=109.20 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCceEEEecCCCC-CCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc
Q 038485 33 MSRVIALDLSDTY-GGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110 (184)
Q Consensus 33 ~~~l~~L~l~~n~-l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 110 (184)
..++++|++++|. +.. +++..|..+++|++|++++ |.+....+.. |..+++|+.+++++|.+++ +|. +.
T Consensus 54 l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~~ 124 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-LT 124 (239)
T ss_dssp CTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-CT
T ss_pred CCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-cc
Confidence 4567777777775 665 6666667777777777776 7776555444 6666677777776666653 343 44
Q ss_pred cCCCCc---EEeCCCc-cccCcccHhhhcCCCCCc-EEECCCCCCCc
Q 038485 111 HLSSLR---SLNLFWN-RLEGSIDVKELDSLRDLE-ELDIGGNKIDK 152 (184)
Q Consensus 111 ~l~~L~---~L~l~~n-~~~~~l~~~~~~~~~~L~-~L~ls~N~l~~ 152 (184)
.+++|+ .+++++| .++ .++...+..+++|+ .+++++|+++.
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred cccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcc
Confidence 555555 5555555 554 44443455555555 55555555553
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.51 E-value=6.3e-14 Score=117.25 Aligned_cols=130 Identities=24% Similarity=0.261 Sum_probs=97.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
+.++++|++++|.+.. +++..|..+++|++|++++|.+++..|.. |..+++|++|++++|.++ .+|.. .+
T Consensus 51 ~~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CTTCCEEECCSSCCCC---CCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCcCEEECCCCCccc---cChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 3578888888888886 77677788888888888888888777766 788888888888888888 55655 77
Q ss_pred CCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 113 SSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
++|++|++++|.++ .++ ...++.+++|++|++++|.+.+. ....+..+ +|+.+++++|.+
T Consensus 121 ~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 121 ASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp TTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTS-CEEEEEEEESSC
T ss_pred ccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC--chhhhhhc-eeeEEEeecccc
Confidence 88888888888887 443 12788888888888888888762 22333344 347777777666
No 93
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=5.5e-14 Score=118.11 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=101.9
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 114 (184)
.++.|++++|.+.. ++. +..+++|+.|++++|.+. ..|.. +..+++|+.|++++|.+++ +| .++.+++
T Consensus 442 ~L~~L~Ls~n~l~~---lp~--~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTV---LCH--LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSS---CCC--GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred CceEEEecCCCCCC---CcC--ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCCCC
Confidence 57889999999997 654 788999999999999998 55666 8999999999999999995 67 8999999
Q ss_pred CcEEeCCCccccCcc-cHhhhcCCCCCcEEECCCCCCCccccCccc-cccccceeecc
Q 038485 115 LRSLNLFWNRLEGSI-DVKELDSLRDLEELDIGGNKIDKFVVSKGT-TNTIKNANLYK 170 (184)
Q Consensus 115 L~~L~l~~n~~~~~l-~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~-~~~l~~L~~~~ 170 (184)
|+.|++++|.+++.. |. .+..+++|+.|++++|++++.++.... ...+.+|+.++
T Consensus 510 L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999999998443 65 899999999999999999988765433 22345555443
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=2.5e-14 Score=123.33 Aligned_cols=115 Identities=24% Similarity=0.249 Sum_probs=87.2
Q ss_pred cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485 53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK 132 (184)
Q Consensus 53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~ 132 (184)
++..|..+..|+.|++++|.+.. .|.. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.++ .+|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~- 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISAN----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA- 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGG----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS-
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChh----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh-
Confidence 34556778888888888888874 4444 568888888888888888 77888888888888888888888 7876
Q ss_pred hhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 133 ELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 133 ~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
.++.+++|+.|++++|.+...+.. +..+++|..+++++|.+++
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPWE---FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCSS---TTSCTTCCCEECTTSCCCS
T ss_pred hhcCCCCCCEEECCCCCCCccChh---hhcCCCccEEeCCCCccCC
Confidence 688888888888888888754332 5667788888888888764
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=1e-13 Score=114.71 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCC--cchhhhhhhhcCCCCCcEEECCCCCCCchhHHh-h
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIAS--CVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-L 109 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~ 109 (184)
..++++|++++|.+.+ ..+..+..+++|++|++++|.+.+ ..|.. +..+++|+.|++++|.+.+.+|.. +
T Consensus 323 l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred CCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccchh
Confidence 4556666666666654 333444555666666666665554 22222 455555555555555555323322 2
Q ss_pred ccC----------------------CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485 110 THL----------------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167 (184)
Q Consensus 110 ~~l----------------------~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~ 167 (184)
..+ ++|+.|++++|+++ .+|. .+..+++|++|++++|++++.++. .+..+++|.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCCccCHH--HhccCCccc
Confidence 222 45666666666665 5665 455677777777777777754332 345566666
Q ss_pred ecccccccee
Q 038485 168 LYKLAGFFAI 177 (184)
Q Consensus 168 ~~~l~~~~~~ 177 (184)
.+++++|.+.
T Consensus 472 ~L~l~~N~~~ 481 (520)
T 2z7x_B 472 KIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCBC
T ss_pred EEECcCCCCc
Confidence 7777777664
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.5e-13 Score=104.85 Aligned_cols=126 Identities=25% Similarity=0.298 Sum_probs=106.3
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..+++.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ +|. +..
T Consensus 40 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~-~~~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS---LA--GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNG-IPS- 105 (263)
T ss_dssp HTTCSEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTT-CCC-
T ss_pred cCcCcEEECcCCCccc---ch--HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCc-ccc-
Confidence 6789999999999986 55 46789999999999999987554 7899999999999999984 443 333
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|+.|++++|.++ .++ .+..+++|+.|++++|++++.+ .+..+++|+.+++++|.+.+.
T Consensus 106 ~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC
T ss_pred CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch
Confidence 89999999999998 565 5899999999999999999853 356688888899999988754
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.2e-13 Score=116.90 Aligned_cols=106 Identities=26% Similarity=0.355 Sum_probs=50.3
Q ss_pred CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485 58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137 (184)
Q Consensus 58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~ 137 (184)
..+++|+.|++++|.+... + . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++ .++. +..+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l-~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l 174 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI-N-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--LAGL 174 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC-G-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG--GTTC
T ss_pred ccCCCCCEEEecCCCCCCC-c-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh--hccC
Confidence 4444444444444444432 1 1 44445555555555554432 33444555555555555554 2221 4455
Q ss_pred CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|+.|++++|++++. + .+..+++|..+++++|.+..
T Consensus 175 ~~L~~L~Ls~N~i~~l-~---~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCCEEECCSSCCCBC-G---GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCCCCCC-h---HHccCCCCCEEEccCCcCcC
Confidence 5555555555555542 1 23345555555556655543
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=6.1e-15 Score=127.21 Aligned_cols=113 Identities=27% Similarity=0.368 Sum_probs=101.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
...++.|+|++|.+.. ++...+ .+++|++|++++|.++ ..|.. +..+++|+.|++++|.++ .+|..++.+
T Consensus 223 l~~L~~L~Ls~n~l~~---l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN---ISANIF-KYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp CCCCCEEECTTSCCSC---CCGGGG-GCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred CCCCcEEECCCCCCCC---CChhhc-CCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 5778999999999986 776664 7999999999999999 56666 899999999999999999 789999999
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 157 (184)
++|++|++++|.++ .+|. .++.+++|+.|++++|++++.+|..
T Consensus 293 ~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChHH
Confidence 99999999999998 8987 6999999999999999999877643
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=6.7e-14 Score=122.40 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=110.8
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHh--h
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS--L 109 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~ 109 (184)
...+++.|++++|.... .+++..|..+++|++|++++|.+.+..|.. |..+++|++|++++|.+.+..|.. +
T Consensus 46 ~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence 46789999999996543 377788899999999999999999888877 999999999999999998766665 8
Q ss_pred ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccc--cceeeccccccceee
Q 038485 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTI--KNANLYKLAGFFAIW 178 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l--~~L~~~~l~~~~~~~ 178 (184)
..+++|++|++++|.+++..+...++.+++|++|++++|.+.+..+. .+..+ ++|+.++++.|.+..
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~--~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH--ELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG--GGHHHHHCSSCCCEECCSBSCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH--HcccccCCccceEECCCCcccc
Confidence 89999999999999998544433789999999999999999876553 22233 455555555555543
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=8.7e-14 Score=114.89 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=91.3
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc-cCCCCcEEeCCCccccCcccHhhhcCC
Q 038485 59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLFWNRLEGSIDVKELDSL 137 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~l~~~~~~~~ 137 (184)
.+++|+.|++++|.+++..|.. +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++ .++ ....+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~--~~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK--GQVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE--CCCCC
T ss_pred ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccc--ccccC
Confidence 3578899999999998877766 78889999999999999987787776 7899999999999998 454 34568
Q ss_pred CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|+.|++++|.+++.++. +..+.+|..+++++|.+++
T Consensus 191 ~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCcc
Confidence 8999999999999987664 4567788888889998875
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=2.2e-13 Score=113.94 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=110.2
Q ss_pred eEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485 36 VIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115 (184)
Q Consensus 36 l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 115 (184)
.+.++++++.++. +|...+ ++++.|++++|.+.+..+.. |..+++|+.|++++|.+++..|..|..+++|
T Consensus 33 ~~~l~ls~~~L~~---ip~~~~---~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 33 ESMVDYSNRNLTH---VPKDLP---PRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CCEEECTTSCCCS---CCTTSC---TTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CcEEEcCCCCCcc---CCCCCC---CCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 3789999999997 776543 79999999999999888777 9999999999999999998778999999999
Q ss_pred cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
++|++++|.++ .+|. . .+++|++|++++|++.+.+. ...+..+++|+.+++++|.+.
T Consensus 103 ~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCC
T ss_pred CEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccc
Confidence 99999999998 8886 3 89999999999999987431 145567888888888888875
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=4.8e-13 Score=113.18 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=108.4
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 111 (184)
.+.+++.|+|++|.+.. +++ +..+++|+.|++++|.+.+. + . +..+++|+.|++++|.+.+ + +.+..
T Consensus 63 ~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l-~-~----l~~l~~L~~L~Ls~N~l~~-l-~~l~~ 129 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDL-S-S----LKDLKKLKSLSLEHNGISD-I-NGLVH 129 (605)
T ss_dssp GCTTCCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCC-T-T----STTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred cCCCCCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCC-h-h----hccCCCCCEEEecCCCCCC-C-ccccC
Confidence 46789999999999987 554 68899999999999999863 3 3 8899999999999999985 3 46888
Q ss_pred CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
+++|+.|++++|.++ .++ .+..+++|+.|++++|.+.+.+| +..+.+|..+++++|.++..
T Consensus 130 l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 130 LPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC
T ss_pred CCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC
Confidence 999999999999998 553 68999999999999999998766 55678888888888888754
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.7e-13 Score=120.05 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred CCCceeEEe-cCCCCceEEEecCCCCCCccc---------------cccCcc-CCCCCCCCEEeCCCCcCCCcchhhhhh
Q 038485 21 CCQWERVEC-SNTMSRVIALDLSDTYGGEYW---------------YLNASL-FTPFQQLESLDLTDNKIASCVENEGIE 83 (184)
Q Consensus 21 ~c~~~gv~c-~~~~~~l~~L~l~~n~l~~~~---------------~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~ 83 (184)
.+...++.. .....+++.|+|++|.+.... .+|... |..+++|++|++++|.+.+..|..
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~--- 510 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF--- 510 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG---
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH---
Confidence 345555432 223678999999999988510 134333 338999999999999999988887
Q ss_pred hhcCCCCCcEEECCCCC-CCc-hhHHhhccCC-------CCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCcc
Q 038485 84 RLSRLNNLKMLNLSGNS-FNN-SILSSLTHLS-------SLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 84 ~~~~l~~L~~L~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+..+++|+.|++++|. +++ .+|..++.+. +|+.|++++|.++ .+|. ..+..+++|+.|++++|.+. .
T Consensus 511 -l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 511 -LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp -GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred -HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 8999999999999998 887 7888776655 9999999999998 7874 36889999999999999998 4
Q ss_pred ccCccccccccceeecccccccee
Q 038485 154 VVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 154 ~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+| .+..+++|+.+++++|.+.
T Consensus 588 lp---~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 588 LE---AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CC---CCCTTSEESEEECCSSCCS
T ss_pred ch---hhcCCCcceEEECcCCccc
Confidence 44 4556777777788887775
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=1.9e-13 Score=106.77 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=97.8
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc-cCC
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLS 113 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~ 113 (184)
.+++|++++|.+.. ++. ..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+. .++
T Consensus 100 ~L~~L~l~~n~l~~---~~~---~~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 100 SIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp TCCEEECCSSCCSE---EEE---CCCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred CcCEEECCCCccCC---cCc---cccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 44444444444443 332 23577899999999998776655 78889999999999999977676664 689
Q ss_pred CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+|+.|++++|.++ .++. ...+++|++|++++|++++.++. +..+++|+.+++++|.+..
T Consensus 170 ~L~~L~L~~N~l~-~~~~--~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 170 TLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp TCCEEECTTSCCC-EEEC--CCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCE
T ss_pred cCCEEECCCCcCc-cccc--ccccccCCEEECCCCcCCcchhh---hcccCcccEEECcCCcccc
Confidence 9999999999998 5553 44688999999999999987654 5567888888999998874
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.6e-13 Score=108.77 Aligned_cols=126 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. +++ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+
T Consensus 264 l~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 264 LTKLTELKLGANQISN---ISP--LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp CTTCSEEECCSSCCCC---CGG--GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred CCCCCEEECCCCccCc---ccc--ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 4455566666665554 332 4566677777777776665433 5667777777777777775544 6677
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
++|+.|++++|.++ .++ .+..+++|+.|++++|++++.+| +..+++|..+++++|.++.
T Consensus 331 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVS-DVS--SLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccC-Cch--hhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCCcccC
Confidence 78888888888877 443 57788888888888888887665 3456667777777777765
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=6.5e-14 Score=109.02 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch--hHHh--hccCCCCcEEeCCCccccCcccHh--
Q 038485 59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS--ILSS--LTHLSSLRSLNLFWNRLEGSIDVK-- 132 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~--~p~~--~~~l~~L~~L~l~~n~~~~~l~~~-- 132 (184)
.+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+. .+.. ++.+++|++|++++|.++ .++..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH
Confidence 4566677777777666655554 66777777788777776532 2211 256677788888888776 44331
Q ss_pred -hhcCCCCCcEEECCCCCCCcccc-Cccccccccceeecccccccee
Q 038485 133 -ELDSLRDLEELDIGGNKIDKFVV-SKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 133 -~~~~~~~L~~L~ls~N~l~~~~~-~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
.+..+++|++|++++|++.+..| ....+..+++|+.+++++|.++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 24567888888888888888743 3344444467778888888876
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.7e-13 Score=95.62 Aligned_cols=113 Identities=26% Similarity=0.299 Sum_probs=96.9
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhcc
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTH 111 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~ 111 (184)
..++++|++++|.+.. + ..+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+++. .+..+..
T Consensus 48 l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 48 FVNLEFLSLINVGLIS---V--SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLKK 118 (168)
T ss_dssp GGGCCEEEEESSCCCC---C--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred CCCCCEEeCcCCCCCC---h--hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHhc
Confidence 5789999999999987 4 56788999999999999999876665 66799999999999999853 2378899
Q ss_pred CCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECCCCCCCcccc
Q 038485 112 LSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
+++|+.|++++|.++ .++. ..+..+++|+.|++++|.+...+.
T Consensus 119 l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 119 LECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999999999998 5553 478899999999999999876543
No 108
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.5e-13 Score=95.28 Aligned_cols=104 Identities=24% Similarity=0.353 Sum_probs=89.9
Q ss_pred CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485 18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88 (184)
Q Consensus 18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l 88 (184)
..+.|+|..+.|... ...++.|++++|.+.. +++..|..+++|++|++++|.+++..+.. |..+
T Consensus 5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l 77 (170)
T 3g39_A 5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK---LEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKL 77 (170)
T ss_dssp -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc---cChhhhcCcccCCEEECCCCCcCccChhh----ccCC
Confidence 456678999998652 4678999999999998 88888899999999999999999877766 7899
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCc
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGS 128 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 128 (184)
++|+.|++++|.++...+..+..+++|+.|++++|.+...
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999999966666799999999999999998743
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=8.2e-13 Score=103.88 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcC
Q 038485 57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS 136 (184)
Q Consensus 57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~ 136 (184)
+..+++|++|++++|.+....+ +..+++|+++++++|.+... +.+..+++|+.+++++|.++ .++ .+..
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~~~ 285 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VLNN 285 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGG
T ss_pred hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hhcC
Confidence 4556677777777777665433 56777777777777777642 45667777888888877776 453 4777
Q ss_pred CCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 137 LRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 137 ~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
+++|+.|++++|++.+.++ ..+..+++|+.+++++|.++..
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM--EVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH--HHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCCCEEECcCCcCCCcCh--hHhhccccCCEEEccCCccccc
Confidence 7788888888888776555 4445677777777788877654
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.1e-12 Score=91.40 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=90.6
Q ss_pred CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhc
Q 038485 32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLT 110 (184)
Q Consensus 32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~ 110 (184)
...+++.|++++|.+.. + ..+..+++|++|++++|.+.+..|.. +..+++|+.+++++|.+++. .+..+.
T Consensus 40 ~l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 40 EFEELEFLSTINVGLTS---I--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp TCTTCCEEECTTSCCCC---C--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred hcCCCcEEECcCCCCCC---c--hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 36789999999999987 4 56788999999999999999877765 67799999999999999963 358899
Q ss_pred cCCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECC
Q 038485 111 HLSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIG 146 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls 146 (184)
.+++|+.+++++|.++ .++. ..+..+++|+.|+++
T Consensus 111 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 9999999999999998 4543 468899999999876
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=2.9e-13 Score=107.14 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCC
Q 038485 20 DCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN 90 (184)
Q Consensus 20 ~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 90 (184)
+.|++..|.|... +.++++|+|++|.++. ++...|.++++|++|++++|.+.+..|.. +|..+++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~ 80 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK 80 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence 5688999999651 3578999999999997 88889999999999999999987665542 1778888
Q ss_pred CcE-EECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC-CCCCc
Q 038485 91 LKM-LNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG-NKIDK 152 (184)
Q Consensus 91 L~~-L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~-N~l~~ 152 (184)
+.. +.+..|.+....|..|..+++|+++++++|.++ .++...+.....+..+++.. +.+..
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcccccccc
Confidence 765 556678888666788889999999999999887 44432344444455555533 33443
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=2.5e-12 Score=105.35 Aligned_cols=107 Identities=23% Similarity=0.327 Sum_probs=58.0
Q ss_pred CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485 58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137 (184)
Q Consensus 58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~ 137 (184)
..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++ ++. +..+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l 330 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-ISP--VSSL 330 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CGG--GGGC
T ss_pred hcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-chh--hccC
Confidence 444555555555555543322 4455555555555555553222 4555666666666666652 221 4556
Q ss_pred CCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485 138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179 (184)
Q Consensus 138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~ 179 (184)
++|+.|++++|++.+. ..+..+++|+.+++++|.+.+.
T Consensus 331 ~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp TTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCBC
T ss_pred ccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCccCcc
Confidence 6666666666666553 2334566666667777766544
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2e-12 Score=92.72 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=88.9
Q ss_pred CCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcE
Q 038485 63 LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEE 142 (184)
Q Consensus 63 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~ 142 (184)
-+.+++++|.+.. .|.. + .+.|+.|++++|.+++..|..+..+++|+.|++++|+++ .++...+..+++|+.
T Consensus 14 ~~~l~~~~n~l~~-iP~~----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAG----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCc-cCCC----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence 4789999999975 4543 3 388999999999999777888999999999999999998 677656789999999
Q ss_pred EECCCCCCCccccCccccccccceeecccccccee
Q 038485 143 LDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 143 L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
|++++|++++.++ ..+..+++|..+++++|.+.
T Consensus 86 L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLKSIPR--GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCccceeCH--HHhccccCCCEEEeCCCCcc
Confidence 9999999998765 44567888888899998764
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=4e-12 Score=100.14 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCceeEEecCCCCceEEEecCCC-CCCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485 21 CCQWERVECSNTMSRVIALDLSDT-YGGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIERLSRLNNLKMLNLSG 98 (184)
Q Consensus 21 ~c~~~gv~c~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~~~~l~~L~~L~l~~ 98 (184)
.|.|..+.|. ++ .+.. +|. +..+.+|+.|++++ |.+.+..+.. |..+++|+.|++++
T Consensus 7 ~C~~~~v~~~------------~~n~l~~---ip~--l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS---LHH--LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVK 65 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT---TTT--SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCS
T ss_pred cccCCEEEcC------------CCCCCCc---cCC--CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCC
Confidence 5777777665 33 5554 555 67888999999996 9998877776 88999999999999
Q ss_pred CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485 99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~ 153 (184)
|.+++..|..|..+++|+.|+|++|+++ .+|...+..++ |+.|++.+|++...
T Consensus 66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999877888899999999999999998 67664555555 99999999998753
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.7e-12 Score=93.00 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=93.2
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHH--hhcc
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--SLTH 111 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~~~~ 111 (184)
++++.|++++|.+.. + ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+. ..|. .+..
T Consensus 42 ~~L~~L~Ls~N~l~~---~--~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~-~~~~~~~l~~ 111 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRK---L--DGFPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLV-ELGDLDPLAS 111 (176)
T ss_dssp TCCSEEECCSSCCCE---E--CCCCCCSSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCC-CGGGGGGGGG
T ss_pred CCCCEEECCCCCCCc---c--cccccCCCCCEEECCCCcccccCcch----hhcCCCCCEEECCCCcCC-cchhhHhhhc
Confidence 489999999999997 5 45788999999999999999765554 588999999999999997 5565 7889
Q ss_pred CCCCcEEeCCCccccCcccHh---hhcCCCCCcEEECCCCCCCcc
Q 038485 112 LSSLRSLNLFWNRLEGSIDVK---ELDSLRDLEELDIGGNKIDKF 153 (184)
Q Consensus 112 l~~L~~L~l~~n~~~~~l~~~---~~~~~~~L~~L~ls~N~l~~~ 153 (184)
+++|+.+++++|.++ .++.. .+..+++|+.++++.|.....
T Consensus 112 l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999999998 67652 388999999999999887543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1.7e-12 Score=109.00 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=68.8
Q ss_pred cCCCCCCCCCCC-----CceeE-EecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhh
Q 038485 11 DRKNGEGATDCC-----QWERV-ECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIER 84 (184)
Q Consensus 11 ~~~~~~~~~~~c-----~~~gv-~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 84 (184)
+..|.. +...| .|.++ .|. ..+++.|++++|.+.. ++...+ ++|++|++++|.++. .| .
T Consensus 33 l~~W~~-~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~---lp~~l~---~~L~~L~Ls~N~l~~-ip-~---- 97 (571)
T 3cvr_A 33 WDKWEK-QALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS---LPDNLP---PQITVLEITQNALIS-LP-E---- 97 (571)
T ss_dssp HHHHHT-TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC---CCSCCC---TTCSEEECCSSCCSC-CC-C----
T ss_pred HHHHhc-cCCccccccchhhhccccc--cCCccEEEeCCCCCCc---cCHhHc---CCCCEEECcCCCCcc-cc-c----
Confidence 345643 56667 68888 675 3578888888888776 555442 567777777777763 33 2
Q ss_pred hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
.+++|+.|++++|.+++ +|. +.. +|+.|++++|.++ .+|. .+++|+.|++++|.+++
T Consensus 98 --~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 98 --LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM 154 (571)
T ss_dssp --CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred --ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc
Confidence 24566666666666663 444 332 5566666666555 3442 34455555555555554
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=2.1e-12 Score=102.54 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=69.2
Q ss_pred ceEEEecCCCCCCccccccCccCCC-----CCCCCEEeCCCCcCCCcchhhhhhhhcCC-CCCcEEECCCCCCCchhHHh
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTP-----FQQLESLDLTDNKIASCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSS 108 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~-----l~~L~~L~ls~n~l~~~~p~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~ 108 (184)
++++|++++|.+.. .....+.. .++|++|++++|.+.+..+......+..+ ++|+.|++++|.+++..+..
T Consensus 52 ~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGF---KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGG---SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEECcCCCCCH---HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 55566666665543 22211222 15566666666666555544433334444 56666666666665444433
Q ss_pred hc----c-CCCCcEEeCCCccccCc----ccHhhhcCCC-CCcEEECCCCCCCccccCc--cccccc-cceeeccccccc
Q 038485 109 LT----H-LSSLRSLNLFWNRLEGS----IDVKELDSLR-DLEELDIGGNKIDKFVVSK--GTTNTI-KNANLYKLAGFF 175 (184)
Q Consensus 109 ~~----~-l~~L~~L~l~~n~~~~~----l~~~~~~~~~-~L~~L~ls~N~l~~~~~~~--~~~~~l-~~L~~~~l~~~~ 175 (184)
+. . ..+|++|++++|.+++. ++. .+...+ +|++|++++|++.+..+.. ..+... ++|+.+++++|.
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 32 2 24566666666666521 111 233333 6666666666665533211 112223 466666667776
Q ss_pred eee
Q 038485 176 AIW 178 (184)
Q Consensus 176 ~~~ 178 (184)
+..
T Consensus 208 i~~ 210 (362)
T 3goz_A 208 LGL 210 (362)
T ss_dssp GGG
T ss_pred CCh
Confidence 654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1e-11 Score=104.37 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=94.4
Q ss_pred CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485 62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141 (184)
Q Consensus 62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~ 141 (184)
.|+.|++++|.+++. |. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+| .++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCC
T ss_pred CceEEEecCCCCCCC-cC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc--ccCCCCCCc
Confidence 588999999999874 43 789999999999999999 78999999999999999999999 577 699999999
Q ss_pred EEECCCCCCCccc-cCccccccccceeeccccccceeeEE
Q 038485 142 ELDIGGNKIDKFV-VSKGTTNTIKNANLYKLAGFFAIWFI 180 (184)
Q Consensus 142 ~L~ls~N~l~~~~-~~~~~~~~l~~L~~~~l~~~~~~~~~ 180 (184)
.|++++|++++.+ | ..+..+++|..+++++|.+++..
T Consensus 512 ~L~Ls~N~l~~~~~p--~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 512 ELLLCNNRLQQSAAI--QPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp EEECCSSCCCSSSTT--GGGGGCTTCCEEECTTSGGGGSS
T ss_pred EEECCCCCCCCCCCc--HHHhcCCCCCEEEecCCcCCCCc
Confidence 9999999999875 5 44567888999999999987653
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=2.1e-11 Score=99.92 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=32.4
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.++++|++++|.+.. ++ +..+++|++|++++|.+.+. + +..+++|++|++++|.+++ +| ++.++
T Consensus 64 ~~L~~L~Ls~n~l~~---~~---~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITT---LD---LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQNP 127 (457)
T ss_dssp TTCSEEECCSSCCSC---CC---CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTCT
T ss_pred CCCCEEEccCCcCCe---Ec---cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCCC
Confidence 344444444444443 21 33444444444444444432 1 3344444444444444442 11 33444
Q ss_pred CCcEEeCCCcccc
Q 038485 114 SLRSLNLFWNRLE 126 (184)
Q Consensus 114 ~L~~L~l~~n~~~ 126 (184)
+|+.|++++|.++
T Consensus 128 ~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 128 LLTYLNCARNTLT 140 (457)
T ss_dssp TCCEEECTTSCCS
T ss_pred cCCEEECCCCccc
Confidence 4444444444443
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=4.4e-12 Score=99.22 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCCCCCCEEeCCCC-cCCCc-chhhhhhhhcCCCCCcEEECCCC-CCCch-hHHhhccCC-CCcEEeCCCcc--cc-Ccc
Q 038485 58 TPFQQLESLDLTDN-KIASC-VENEGIERLSRLNNLKMLNLSGN-SFNNS-ILSSLTHLS-SLRSLNLFWNR--LE-GSI 129 (184)
Q Consensus 58 ~~l~~L~~L~ls~n-~l~~~-~p~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~~~l~-~L~~L~l~~n~--~~-~~l 129 (184)
..+++|++|++++| .+++. .+.. +..+++|+.|++++| .+++. .+..+..++ +|++|++++|. ++ +.+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 34455555555555 33321 1221 344555555555555 55432 344444555 55555555552 22 123
Q ss_pred cHhhhcCCCCCcEEECCCCC-CCccccCccccccccceeecccccc
Q 038485 130 DVKELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIKNANLYKLAGF 174 (184)
Q Consensus 130 ~~~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~~L~~~~l~~~ 174 (184)
+. .+..+++|++|++++|. +++..+ ..+..+++|+.+++++|
T Consensus 215 ~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 215 ST-LVRRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HH-HHHHCTTCSEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTC
T ss_pred HH-HHhhCCCCCEEeCCCCCcCCHHHH--HHHhCCCCCCEeeCCCC
Confidence 32 34455566666666655 443222 12233444555555554
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=3e-12 Score=102.32 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=77.4
Q ss_pred CceEEEecCCCCCCccccccC--ccCCCCCCCCEEeCCCCcCCCcchhhhhh-hhcCCCCCcEEECCCCCCC----chhH
Q 038485 34 SRVIALDLSDTYGGEYWYLNA--SLFTPFQQLESLDLTDNKIASCVENEGIE-RLSRLNNLKMLNLSGNSFN----NSIL 106 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~~~~l~~L~~L~l~~n~~~----~~~p 106 (184)
+++++|++++|.+.... ++. ..+..+++|++|++++|.+....-....+ .+..+++|+.|++++|.++ ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGS-MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGG-HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHH-HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 45555555555554200 110 12344566667777766665211111111 2566677777777777764 3456
Q ss_pred HhhccCCCCcEEeCCCccccCc----ccHhhh--cCCCCCcEEECCCCCCCcc----ccCccccccccceeeccccccce
Q 038485 107 SSLTHLSSLRSLNLFWNRLEGS----IDVKEL--DSLRDLEELDIGGNKIDKF----VVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 107 ~~~~~l~~L~~L~l~~n~~~~~----l~~~~~--~~~~~L~~L~ls~N~l~~~----~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
..+..+++|+.|++++|.+++. ++. .+ +.+++|++|++++|.+.+. ++. .....+++|..+++++|.+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBS
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcC
Confidence 6666777777777777777532 222 34 2367777777777777661 221 1112356666667777766
Q ss_pred ee
Q 038485 177 IW 178 (184)
Q Consensus 177 ~~ 178 (184)
++
T Consensus 316 ~~ 317 (386)
T 2ca6_A 316 SE 317 (386)
T ss_dssp CT
T ss_pred Cc
Confidence 53
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.27 E-value=5.8e-11 Score=97.27 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=18.1
Q ss_pred hcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 134 LDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 134 ~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+..+++|+.|++++|++++. | +..+++|+.+++++|.+++
T Consensus 208 l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC
T ss_pred cccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCC
Confidence 33444455555555555442 1 2234444445555555443
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=2.3e-12 Score=102.27 Aligned_cols=143 Identities=22% Similarity=0.181 Sum_probs=84.1
Q ss_pred CceEEEecCCCCCCccccccCc----cCCCC-CCCCEEeCCCCcCCCcchhhhhhhhcCC-CCCcEEECCCCCCCchh--
Q 038485 34 SRVIALDLSDTYGGEYWYLNAS----LFTPF-QQLESLDLTDNKIASCVENEGIERLSRL-NNLKMLNLSGNSFNNSI-- 105 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~----~~~~l-~~L~~L~ls~n~l~~~~p~~~~~~~~~l-~~L~~L~l~~n~~~~~~-- 105 (184)
.++++|++++|.+.. .... .+..+ ++|++|++++|.+....+.....++..+ ++|++|++++|.+++..
T Consensus 80 ~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNFLSY---KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSCGGG---SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCccEEECcCCcCCh---HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 567778888777764 2222 12333 6777888888777766655544444443 57778888877776433
Q ss_pred --HHhhccCC-CCcEEeCCCccccCcccH---hhhcCC-CCCcEEECCCCCCCccccC--cccccc-ccceeeccccccc
Q 038485 106 --LSSLTHLS-SLRSLNLFWNRLEGSIDV---KELDSL-RDLEELDIGGNKIDKFVVS--KGTTNT-IKNANLYKLAGFF 175 (184)
Q Consensus 106 --p~~~~~l~-~L~~L~l~~n~~~~~l~~---~~~~~~-~~L~~L~ls~N~l~~~~~~--~~~~~~-l~~L~~~~l~~~~ 175 (184)
+..+..++ +|+.|++++|.+++..+. ..+..+ ++|++|++++|.+.+.... ...+.. .++|+.+++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 33444444 777888887777633321 123344 4778888887777652211 012222 2466777777777
Q ss_pred eeeE
Q 038485 176 AIWF 179 (184)
Q Consensus 176 ~~~~ 179 (184)
+.+.
T Consensus 237 l~~~ 240 (362)
T 3goz_A 237 LHGP 240 (362)
T ss_dssp CCCC
T ss_pred CCcH
Confidence 7543
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=7.2e-12 Score=97.99 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=59.8
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc-chhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC-VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++.|++++|.+.. ..+. +..+++|++|++++|.+... .+.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 70 ~~l~~L~l~~n~l~~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECS---CCCS-CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred ccceEEEcCCccccc---cchh-hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 445555555555543 2222 23456666666666665433 3333 5556666666666666665555556666
Q ss_pred CCCcEEeCCCc-cccCc-ccHhhhcCCCCCcEEECCCC-CCCc
Q 038485 113 SSLRSLNLFWN-RLEGS-IDVKELDSLRDLEELDIGGN-KIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n-~~~~~-l~~~~~~~~~~L~~L~ls~N-~l~~ 152 (184)
++|++|++++| .+++. ++. .+..+++|++|++++| .+++
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH
T ss_pred CCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcCh
Confidence 66666666666 44421 322 3555566666666666 5553
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=2.9e-12 Score=102.42 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=58.3
Q ss_pred CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-----hHHhhccCCCCcEEeCCCcccc----CcccH
Q 038485 61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-----ILSSLTHLSSLRSLNLFWNRLE----GSIDV 131 (184)
Q Consensus 61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-----~p~~~~~l~~L~~L~l~~n~~~----~~l~~ 131 (184)
++|++|++++|.+...........+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555544221111112244555666666666665521 1224555666666666666663 23444
Q ss_pred hhhcCCCCCcEEECCCCCCCccccC--cccc--ccccceeeccccccceee
Q 038485 132 KELDSLRDLEELDIGGNKIDKFVVS--KGTT--NTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~--~~l~~L~~~~l~~~~~~~ 178 (184)
.+..+++|++|++++|.+.+.... ...+ ..+++|..+++++|.++.
T Consensus 239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp -HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred -HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 455666666666666666553110 0111 125556666666666653
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=7.4e-14 Score=102.01 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=90.4
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++ .+..+++|++|++++|.+.. .|.. +..+++|+.|++++|.+++ +| .+..+
T Consensus 47 l~~L~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n~l~~-l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKK-IENL----DAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp TTTCSEEECSEEEESC---CC--CHHHHTTCCEEEEEEEEECS-CSSH----HHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred CCCCCEEECCCCCCcc---cc--ccccCCCCCEEECCCCCccc-ccch----hhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 5688999999998886 55 56788999999999999884 4444 5667889999999999985 45 67888
Q ss_pred CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC
Q 038485 113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS 156 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~ 156 (184)
++|+.|++++|.++ .++. ..+..+++|+++++++|++.+.+|.
T Consensus 115 ~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 115 VNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999998 4443 3688899999999999999877654
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=7.4e-11 Score=99.14 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=45.2
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCC-------cEEECCCCCCCccccCcccc
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL-------EELDIGGNKIDKFVVSKGTT 160 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L-------~~L~ls~N~l~~~~~~~~~~ 160 (184)
+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|+++..+...
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l--- 226 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENI--- 226 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCCCCCGGG---
T ss_pred CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcceecCHHH---
Confidence 3456666666666653 444 33 56666666666666 5553 222 45 77777777776543322
Q ss_pred ccccceeeccccccceee
Q 038485 161 NTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 161 ~~l~~L~~~~l~~~~~~~ 178 (184)
..+++|..+++++|.+++
T Consensus 227 ~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GGSCTTEEEECCSSSCCH
T ss_pred hcCCCCCEEEeeCCcCCC
Confidence 236666777777777754
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.7e-10 Score=90.75 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=84.2
Q ss_pred CEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCC-CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485 64 ESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141 (184)
Q Consensus 64 ~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~ 141 (184)
..++.+++ .+.. .|. +..+++|+.|++++ |.+++..+..|..+++|+.|+|++|.++ .++...|..+++|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCC
Confidence 45688887 7875 443 68889999999996 9999777788999999999999999999 55555899999999
Q ss_pred EEECCCCCCCccccCccccccccceeecccccccee
Q 038485 142 ELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 142 ~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~ 177 (184)
.|+|++|++++.++... ..+. |..+++.+|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTV--QGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTT--CSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHc--ccCC-ceEEEeeCCCcc
Confidence 99999999998776433 3333 777777887764
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.15 E-value=3.3e-10 Score=92.71 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=40.0
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 113 (184)
.++++|++++|.+.. ++ .|..+++|++|++++|.+.+ .|. ..++|++|++++|.+++ .| .++.++
T Consensus 131 ~~L~~L~L~~n~l~~---lp--~~~~l~~L~~L~l~~N~l~~-lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK---LP--ELQNSSFLKIIDVDNNSLKK-LPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCCCEEECcCCCCCC---Cc--ccCCCCCCCEEECCCCcCcc-cCC-------CcccccEEECcCCcCCc-Cc-cccCCC
Confidence 355666666665554 43 25666666666666666654 222 12345555555555543 23 344445
Q ss_pred CCcEEeCCCcccc
Q 038485 114 SLRSLNLFWNRLE 126 (184)
Q Consensus 114 ~L~~L~l~~n~~~ 126 (184)
+|+.+++++|.++
T Consensus 196 ~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 196 FLTAIYADNNSLK 208 (454)
T ss_dssp TCCEEECCSSCCS
T ss_pred CCCEEECCCCcCC
Confidence 5555555544444
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=5.7e-14 Score=102.63 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=102.3
Q ss_pred CceEEEecCCCCCCcc----ccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485 34 SRVIALDLSDTYGGEY----WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~----~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 109 (184)
..++.++++++.+... ..++. .+..+++|++|++++|.+.+ .| . +..+++|+.|++++|.+. .+|..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred ccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchh
Confidence 3445555555555430 01222 46789999999999999987 44 4 888999999999999998 677777
Q ss_pred ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
..+++|+.|++++|.++ .++ .+..+++|++|++++|++.+.++ ...+..+++|+.+++++|.+.+
T Consensus 90 ~~~~~L~~L~L~~N~l~-~l~--~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 90 AVADTLEELWISYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHCSEEEEEEEECC-CHH--HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHH
T ss_pred hcCCcCCEEECcCCcCC-cCC--ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCcccc
Confidence 77899999999999998 565 58889999999999999987532 2345667888888889888754
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.12 E-value=5e-10 Score=91.63 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 112 (184)
..++++|++++|.+.. ++.. ..+|++|++++|.+.+. | . +..+++|+.+++++|.+.+ +|.. .
T Consensus 152 l~~L~~L~l~~N~l~~---lp~~----~~~L~~L~L~~n~l~~l-~-~----~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK---LPDL----PPSLEFIAAGNNQLEEL-P-E----LQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CTTCCEEECCSSCCSC---CCCC----CTTCCEEECCSSCCSSC-C-C----CTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred CCCCCEEECCCCcCcc---cCCC----cccccEEECcCCcCCcC-c-c----ccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 4566777777776664 3321 23566666666666542 2 2 5555555555555555542 2211 1
Q ss_pred CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
.+|+.+++++|.++ .+| .++.+++|++|++++|++++
T Consensus 215 ~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSS
T ss_pred CcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCc
Confidence 34455555555444 444 24444445555554444443
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=3e-10 Score=96.35 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=36.8
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCC
Q 038485 60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD 139 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~ 139 (184)
+++|++|++++|.++.. | ..+++|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++
T Consensus 80 l~~L~~L~Ls~N~l~~l-p-------~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSL-P-------VLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSCC-C-------CCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred CCCCCEEEcCCCcCCcC-C-------CCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCC
Confidence 34555555555555432 1 133455555555555542 222 2344555555555554 3432 1255
Q ss_pred CcEEECCCCCCCcc
Q 038485 140 LEELDIGGNKIDKF 153 (184)
Q Consensus 140 L~~L~ls~N~l~~~ 153 (184)
|++|++++|++++.
T Consensus 143 L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 143 LQELSVSDNQLASL 156 (622)
T ss_dssp CCEEECCSSCCSCC
T ss_pred CCEEECcCCcCCCc
Confidence 56666666655543
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.11 E-value=1.2e-11 Score=100.55 Aligned_cols=85 Identities=21% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCcEEECCCCCCCch----hHHhhccCCCCcEEeCCCccccCcccHhhhc----C-CCCCcEEECCCCCCCc----cccC
Q 038485 90 NLKMLNLSGNSFNNS----ILSSLTHLSSLRSLNLFWNRLEGSIDVKELD----S-LRDLEELDIGGNKIDK----FVVS 156 (184)
Q Consensus 90 ~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~----~-~~~L~~L~ls~N~l~~----~~~~ 156 (184)
+|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+. .+. . .++|++|++++|.+++ .++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~- 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA- 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH-
Confidence 444444444444432 233344445555555555555422111 111 1 4455666666555553 222
Q ss_pred ccccccccceeecccccccee
Q 038485 157 KGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 157 ~~~~~~l~~L~~~~l~~~~~~ 177 (184)
..+..+++|+.+++++|.++
T Consensus 392 -~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 392 -ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp -HHHHHCCCCCEEECCSSSCC
T ss_pred -HHHHhCCCccEEECCCCCCC
Confidence 22233455555555665554
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.10 E-value=4.5e-10 Score=95.29 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485 89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168 (184)
Q Consensus 89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~ 168 (184)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++.. | ..+..+++|..
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~l-p--~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRL-P--ESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCSC-C--GGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCcC-C--HHHhhccccCE
Confidence 567777777777773 44 45577888888888887 6664 567788888888888854 3 23556777888
Q ss_pred ccccccceee
Q 038485 169 YKLAGFFAIW 178 (184)
Q Consensus 169 ~~l~~~~~~~ 178 (184)
+++++|.+++
T Consensus 289 L~L~~N~l~~ 298 (622)
T 3g06_A 289 VNLEGNPLSE 298 (622)
T ss_dssp EECCSCCCCH
T ss_pred EEecCCCCCC
Confidence 8888888764
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.10 E-value=2.9e-11 Score=98.34 Aligned_cols=117 Identities=21% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc-----CCCCcEEeCCCccccCc----cc
Q 038485 60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-----LSSLRSLNLFWNRLEGS----ID 130 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~L~l~~n~~~~~----l~ 130 (184)
+++|++|++++|.++.......+..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4445555555554443211111112344455555555555554333322221 13555555555555422 22
Q ss_pred HhhhcCCCCCcEEECCCCCCCccccCc--cccc-cccceeecccccccee
Q 038485 131 VKELDSLRDLEELDIGGNKIDKFVVSK--GTTN-TIKNANLYKLAGFFAI 177 (184)
Q Consensus 131 ~~~~~~~~~L~~L~ls~N~l~~~~~~~--~~~~-~l~~L~~~~l~~~~~~ 177 (184)
. .+..+++|++|++++|.+.+..+.. ..+. ..++|+.+++++|.++
T Consensus 335 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 335 S-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp H-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred H-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 2 3444566666666666655432210 0011 1345556666666654
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=4.2e-11 Score=95.73 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=86.6
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh-cCCCCCcEEECCCCCCCch----hHHh
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS 108 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~-~~l~~L~~L~l~~n~~~~~----~p~~ 108 (184)
..+++|+|++|.+.... .......+.+|+.|++++|.+.......+...+ ...+.|+.|++++|.++.. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~--~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG--LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHH--HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHH--HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 57778888888776411 111112345677888888877654444422223 2467788888888887643 2334
Q ss_pred hccCCCCcEEeCCCccccCc----ccHhhhcCCCCCcEEECCCCCCCccccC--ccccccccceeeccccccceee
Q 038485 109 LTHLSSLRSLNLFWNRLEGS----IDVKELDSLRDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAIW 178 (184)
Q Consensus 109 ~~~l~~L~~L~l~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~~ 178 (184)
+..+++|++|++++|.+++. +.. .+...++|+.|++++|.+++.... ...+...++|..+++++|.|++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 46677788888888887621 122 455667788888888887653221 1223344667777778877753
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=2.4e-10 Score=90.24 Aligned_cols=128 Identities=18% Similarity=0.110 Sum_probs=79.5
Q ss_pred EEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhh---------------------hhhhcCCC-CCcEEE
Q 038485 38 ALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG---------------------IERLSRLN-NLKMLN 95 (184)
Q Consensus 38 ~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---------------------~~~~~~l~-~L~~L~ 95 (184)
.+.+.+|.+.. +++..|..+++|++|++++|.+....+... ..+|..+. .++.|+
T Consensus 84 ~l~~~~N~l~~---l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 84 IRIEKANNLLY---INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp EEEEEETTCCE---ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhcccCCcccc---cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 34555566665 556666666666666666666654332210 01133333 467788
Q ss_pred CCCCCCCchhHHhhccCCCCcEEeCCC-ccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccc
Q 038485 96 LSGNSFNNSILSSLTHLSSLRSLNLFW-NRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLA 172 (184)
Q Consensus 96 l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~ 172 (184)
+++|.++ .+|.......+++.+++.+ |.++ .+|.+.|..+++|+.|++++|+++..++ ..+..|++|..+++.
T Consensus 161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTY 234 (350)
T ss_dssp CCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCT
T ss_pred ccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCC
Confidence 8888887 4444444556788888865 5565 7776667888888888888888887654 335566666655543
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=87.50 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=89.6
Q ss_pred CceEEEecCCCCCCcccc--ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HH
Q 038485 34 SRVIALDLSDTYGGEYWY--LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LS 107 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~ 107 (184)
.++++|+|++|.++.... +........+.|++|++++|.++......+..++...++|++|++++|.+++.. +.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 468999999999975211 111111356889999999999876544444444688999999999999998643 55
Q ss_pred hhccCCCCcEEeCCCccccCc----ccHhhhcCCCCCcEEECCCCCCCccc
Q 038485 108 SLTHLSSLRSLNLFWNRLEGS----IDVKELDSLRDLEELDIGGNKIDKFV 154 (184)
Q Consensus 108 ~~~~l~~L~~L~l~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~~~~ 154 (184)
.+...++|+.|++++|.+++. +.. .+...++|++|++++|++.+..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHHH
Confidence 667788999999999999732 222 3556789999999999998743
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.1e-08 Score=79.96 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc-EEECCCCCCCccccCccccccccce
Q 038485 88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE-ELDIGGNKIDKFVVSKGTTNTIKNA 166 (184)
Q Consensus 88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~-~L~ls~N~l~~~~~~~~~~~~l~~L 166 (184)
+++|+.+++++|.+.......|..+.+|+.+++.+| ++ .++...|..+++|+ .+++.. .+....+ .+|..+.+|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~--~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEF--GAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECT--TTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEch--hhhhCCccC
Confidence 567788888887777555566778888888888777 65 67766788888887 888776 5655333 556677777
Q ss_pred eecccccccee
Q 038485 167 NLYKLAGFFAI 177 (184)
Q Consensus 167 ~~~~l~~~~~~ 177 (184)
+.+++..+.+.
T Consensus 300 ~~l~l~~n~i~ 310 (329)
T 3sb4_A 300 RYVLATGDKIT 310 (329)
T ss_dssp EEEEECSSCCC
T ss_pred CEEEeCCCccC
Confidence 77777666664
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.6e-08 Score=79.06 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc-EEeCCCccccCcccHhhhcCCC
Q 038485 60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR-SLNLFWNRLEGSIDVKELDSLR 138 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~l~~~~~~~~~ 138 (184)
+++|+.+++++|.+....+.. |..+++|+.+++..| +....+..|..+.+|+ .+++.+ .++ .++...|..|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence 445555555555555443333 555555555555554 4433344455555555 555554 443 44444555555
Q ss_pred CCcEEECCCCCCCcc
Q 038485 139 DLEELDIGGNKIDKF 153 (184)
Q Consensus 139 ~L~~L~ls~N~l~~~ 153 (184)
+|+.++++.|.+...
T Consensus 298 ~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 298 NLRYVLATGDKITTL 312 (329)
T ss_dssp TEEEEEECSSCCCEE
T ss_pred cCCEEEeCCCccCcc
Confidence 555555555555543
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=7.2e-09 Score=74.78 Aligned_cols=118 Identities=17% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCceEEEecCCC-CCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----H
Q 038485 33 MSRVIALDLSDT-YGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----L 106 (184)
Q Consensus 33 ~~~l~~L~l~~n-~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p 106 (184)
...+++|+|++| .+...+. .-...+...++|++|++++|.+.......+.+++...++|++|++++|.+.+.. .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 345666666666 5543110 011122345566666666666654333333333445556666666666665432 3
Q ss_pred HhhccCCCCcEEeC--CCccccCc----ccHhhhcCCCCCcEEECCCCCCC
Q 038485 107 SSLTHLSSLRSLNL--FWNRLEGS----IDVKELDSLRDLEELDIGGNKID 151 (184)
Q Consensus 107 ~~~~~l~~L~~L~l--~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~ 151 (184)
..+...++|+.|++ ++|.+... +.. .+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 33444555666666 55655421 111 3344456666666666553
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=1.3e-08 Score=73.39 Aligned_cols=121 Identities=20% Similarity=0.140 Sum_probs=91.5
Q ss_pred cCCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HHhhccCCCCcEEeCCCccccCc--
Q 038485 56 LFTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLFWNRLEGS-- 128 (184)
Q Consensus 56 ~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l~~n~~~~~-- 128 (184)
.+...+.|++|++++| .+.......+.+++...++|++|++++|.+.+.. ...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567899999999999 8876555555566788899999999999998654 34455668999999999999732
Q ss_pred --ccHhhhcCCCCCcEEEC--CCCCCCccccC--ccccccccceeecccccccee
Q 038485 129 --IDVKELDSLRDLEELDI--GGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 129 --l~~~~~~~~~~L~~L~l--s~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~ 177 (184)
+.. .+...++|++|++ ++|.+...... ...+...++|..+++++|.+.
T Consensus 111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233 5677889999999 88999764221 123345567888888888874
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=2.7e-09 Score=81.44 Aligned_cols=67 Identities=33% Similarity=0.404 Sum_probs=54.0
Q ss_pred cCCCCCcEEECCCCCCCc--hhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC--CCcEEECCCCCCCcccc
Q 038485 86 SRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR--DLEELDIGGNKIDKFVV 155 (184)
Q Consensus 86 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~--~L~~L~ls~N~l~~~~~ 155 (184)
..++.|+.|++++|.+++ .+|..+..+++|+.|+|++|.+++ +. .+..+. +|+.|++++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCccccC
Confidence 457899999999999996 445667789999999999999984 32 344444 89999999999987655
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.58 E-value=8.8e-09 Score=86.14 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=40.7
Q ss_pred CCCCCcEEECCCCC--CCchhHHhhcc-CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccc
Q 038485 87 RLNNLKMLNLSGNS--FNNSILSSLTH-LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTI 163 (184)
Q Consensus 87 ~l~~L~~L~l~~n~--~~~~~p~~~~~-l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l 163 (184)
.+++|+.|+++.+. +++..+..+.. +++|+.|++++|.+++......+..+++|+.|++++|++++.... .....+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~l 512 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA-AAVTKL 512 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH-HHHHHC
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH-HHHHhc
Confidence 34555555554322 44333333332 455666666655554211111344555666666666665432111 111234
Q ss_pred cceeecccccccee
Q 038485 164 KNANLYKLAGFFAI 177 (184)
Q Consensus 164 ~~L~~~~l~~~~~~ 177 (184)
++|+.+++++|.++
T Consensus 513 ~~L~~L~ls~n~it 526 (592)
T 3ogk_B 513 PSLRYLWVQGYRAS 526 (592)
T ss_dssp SSCCEEEEESCBCC
T ss_pred CccCeeECcCCcCC
Confidence 44555555555544
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.43 E-value=2.7e-07 Score=77.09 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=62.8
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC----chhHHhhc
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN----NSILSSLT 110 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~----~~~p~~~~ 110 (184)
++++|+++++.......+ ......+++|++|++++|.+.+.........+..+++|+.|++++|.++ ...+..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 478888877652110001 1112356778888888777655422111111455677777777777775 23445556
Q ss_pred cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG 146 (184)
Q Consensus 111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls 146 (184)
.+++|+.|++++|.+. .++. .+..+++|++++++
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVG-FFKAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHH-HHHHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHH-HHHH-HHhhhhHHHhhccc
Confidence 6777777777777765 3443 55556666666655
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.34 E-value=5.2e-08 Score=81.40 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCCCCCEEeCC--C----CcCCCcchh-hhhhhhcCCCCCcEEECCCCCCCchhHHhhcc-CCCCcEEeCCCccccCccc
Q 038485 59 PFQQLESLDLT--D----NKIASCVEN-EGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-LSSLRSLNLFWNRLEGSID 130 (184)
Q Consensus 59 ~l~~L~~L~ls--~----n~l~~~~p~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~~n~~~~~l~ 130 (184)
.+++|+.|+++ + +.++....+ .....+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 35667777766 2 344322111 1111134556777777766 555555555544 6777777777777753322
Q ss_pred HhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485 131 VKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 131 ~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~ 176 (184)
......+++|+.|++++|++++.... .....+++|+.++++++.+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALL-ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence 21225577777777777777443221 1122345556666666655
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.2e-06 Score=66.70 Aligned_cols=81 Identities=30% Similarity=0.353 Sum_probs=62.8
Q ss_pred CCCCCCEEeCCCCcCCCcc--hhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhccCCCCcEEeCCCccccCcccH----
Q 038485 59 PFQQLESLDLTDNKIASCV--ENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTHLSSLRSLNLFWNRLEGSIDV---- 131 (184)
Q Consensus 59 ~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~l~~---- 131 (184)
.+++|+.|++++|.+++.. +.. +..+++|+.|++++|.+.+. ....+..+ +|+.|++++|.+.+.++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 4789999999999999843 343 66899999999999999854 12233334 899999999999865541
Q ss_pred --hhhcCCCCCcEEE
Q 038485 132 --KELDSLRDLEELD 144 (184)
Q Consensus 132 --~~~~~~~~L~~L~ 144 (184)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 2467889999886
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.22 E-value=2.9e-07 Score=76.89 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=80.7
Q ss_pred CCceEEEecC--C----CCCCcccccc-----CccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC-CCCCcEEECCCCC
Q 038485 33 MSRVIALDLS--D----TYGGEYWYLN-----ASLFTPFQQLESLDLTDNKIASCVENEGIERLSR-LNNLKMLNLSGNS 100 (184)
Q Consensus 33 ~~~l~~L~l~--~----n~l~~~~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~-l~~L~~L~l~~n~ 100 (184)
.++++.|+++ + +.++. .+ ...+..+++|+.|++++ .++...... +.. +++|+.|++++|.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTL---EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTC---CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCC
T ss_pred CCCcceeEeecccCCCcccccC---CchhhHHHHHHhhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCC
Confidence 4578888888 3 44442 11 11245678999999987 565544443 544 8899999999999
Q ss_pred CCchhHHhh-ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485 101 FNNSILSSL-THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 101 ~~~~~p~~~-~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~ 152 (184)
+++..+..+ ..+++|+.|++++|.+++.........+++|+.|++++|+++.
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 987666665 6789999999999999633332234568899999999999854
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=1e-06 Score=70.04 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc--CCCCCcEEECCC--CCCCc-----
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS--RLNNLKMLNLSG--NSFNN----- 103 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~--~l~~L~~L~l~~--n~~~~----- 103 (184)
.+.+++|.++++.-.. +++ +. +++|+.|++..+.+....... +. .+++|+.|++.. +...+
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~--~~-~~~L~~L~L~~~~l~~~~l~~----l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGK--KP-RPNLKSLEIISGGLPDSVVED----ILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCS--CB-CTTCSEEEEECSBCCHHHHHH----HHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred CCCCcEEEEeCCCCce---ecc--cc-CCCCcEEEEecCCCChHHHHH----HHHccCCCCcEEEEeccccccccchhHH
Confidence 4678888887763111 322 22 678888888877765332222 33 688899888753 21111
Q ss_pred hhHHhh--ccCCCCcEEeCCCccccCcccHhhh--cCCCCCcEEECCCCCCCccccC--ccccccccceeecccccccee
Q 038485 104 SILSSL--THLSSLRSLNLFWNRLEGSIDVKEL--DSLRDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAI 177 (184)
Q Consensus 104 ~~p~~~--~~l~~L~~L~l~~n~~~~~l~~~~~--~~~~~L~~L~ls~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~ 177 (184)
.+...+ ..+++|++|++.+|.+.+..+.... ..+++|++|+++.|.+.+.... ...+..+++|+.++++.|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111122 2468899999988888643322112 2567899999999988774221 112235667777777888775
Q ss_pred e
Q 038485 178 W 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=3e-06 Score=60.52 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=50.1
Q ss_pred CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhccC----CCCcEEeCCCcc-ccCcccHhhh
Q 038485 61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL----SSLRSLNLFWNR-LEGSIDVKEL 134 (184)
Q Consensus 61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~l~~~~~ 134 (184)
-.|+.||++++.++...-.. +..+++|+.|++++|. +++.....+..+ ++|++|++++|. +++. ....+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHG
T ss_pred ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHH
Confidence 35666677766665443333 5666777777777764 665555555543 357777777764 5522 12245
Q ss_pred cCCCCCcEEECCCCC
Q 038485 135 DSLRDLEELDIGGNK 149 (184)
Q Consensus 135 ~~~~~L~~L~ls~N~ 149 (184)
..+++|++|++++++
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 567777777777654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.05 E-value=1.3e-05 Score=64.50 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=27.3
Q ss_pred hcCCCCCcEEECCCCCCC-----chhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEEC
Q 038485 85 LSRLNNLKMLNLSGNSFN-----NSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDI 145 (184)
Q Consensus 85 ~~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~l 145 (184)
|..+++|+.+.+.++.+. ...+..|..+.+|+.+.+.. .++ .++...|..|++|+.+.+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEE
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEE
Confidence 444455555555444332 12233444555555555542 233 344444555555555555
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.04 E-value=1.3e-05 Score=64.40 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=82.6
Q ss_pred ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCC-----CcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485 35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIA-----SCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109 (184)
Q Consensus 35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 109 (184)
.++.+.+. +.+.. +....|.++.+|+.+.+.++.+. ...+.. |..+++|+.+.+.. .+.......|
T Consensus 249 ~L~~i~lp-~~i~~---I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 249 GITTVKLP-NGVTN---IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp CCSEEEEE-TTCCE---ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCT-TCCEECTTTT
T ss_pred CccEEEeC-CCccE---EChhHhhCCCCCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCC-ceEEEhhhhh
Confidence 34555552 33443 77788999999999999887664 233444 88999999999994 4765567789
Q ss_pred ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV 155 (184)
Q Consensus 110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~ 155 (184)
..+.+|+.+.+..+ ++ .++...|..+ +|+.+++.+|.+.....
T Consensus 320 ~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred cCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 99999999999665 65 6777689999 99999999998766443
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=6.4e-06 Score=58.80 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=66.5
Q ss_pred CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCC----CCCcEEECCCCC-CCchhHH
Q 038485 34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRL----NNLKMLNLSGNS-FNNSILS 107 (184)
Q Consensus 34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l----~~L~~L~l~~n~-~~~~~p~ 107 (184)
-++++||++++.++. .....+..+++|+.|++++|. ++...-.. +..+ ++|+.|++++|. +++....
T Consensus 61 ~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 368999999999876 333345789999999999985 55433222 5654 379999999975 8887788
Q ss_pred hhccCCCCcEEeCCCcc-cc
Q 038485 108 SLTHLSSLRSLNLFWNR-LE 126 (184)
Q Consensus 108 ~~~~l~~L~~L~l~~n~-~~ 126 (184)
.+..+++|++|+++++. ++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 88899999999999985 54
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=5.3e-05 Score=54.98 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=18.6
Q ss_pred CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485 60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN 102 (184)
Q Consensus 60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~ 102 (184)
.+.|+.|++++|.+.......+.+++..-++|+.|++++|.+.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444444554444443332222233334444444444444444
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=1.2e-05 Score=63.76 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=74.5
Q ss_pred CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCC--CcCCCcc-hhhhhhhhc--CCCCCcEEECCCCCCCchhHH
Q 038485 33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD--NKIASCV-ENEGIERLS--RLNNLKMLNLSGNSFNNSILS 107 (184)
Q Consensus 33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~--n~l~~~~-p~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~ 107 (184)
.++++.|++..+.+.... +..-....+++|+.|+++. +...+.. ...+.+.+. .+++|+.|++.+|.+.+..+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 467899999888776411 1000013578899998753 2211110 101011132 478999999999998765544
Q ss_pred hhc---cCCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECCCCCCCc
Q 038485 108 SLT---HLSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGGNKIDK 152 (184)
Q Consensus 108 ~~~---~l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~N~l~~ 152 (184)
.+. .++.|++|+++.|.+.+.-.. ..+..+++|+.|++++|.+++
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 443 468899999999988742111 023456899999999998875
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=0.00014 Score=52.72 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=81.4
Q ss_pred CCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----HhhccCCCCcEEeCCCccccCc---
Q 038485 57 FTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----SSLTHLSSLRSLNLFWNRLEGS--- 128 (184)
Q Consensus 57 ~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~~~~~--- 128 (184)
...-+.|+.|+++++ .+.......+.+++..-++|+.|++++|.+.+... +.+..-..|++|+|+.|.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456788999999985 77655555556668888999999999999986544 4455668999999999999732
Q ss_pred -ccHhhhcCCCCCcEEECCCC---CCCcccc--Cccccccccceeeccccccce
Q 038485 129 -IDVKELDSLRDLEELDIGGN---KIDKFVV--SKGTTNTIKNANLYKLAGFFA 176 (184)
Q Consensus 129 -l~~~~~~~~~~L~~L~ls~N---~l~~~~~--~~~~~~~l~~L~~~~l~~~~~ 176 (184)
+.. .+...+.|+.|++++| .+..... -...+..-+.|..++++.+.+
T Consensus 117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 222 4556778999999865 3332110 012333445566666665543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.32 E-value=0.00097 Score=53.06 Aligned_cols=90 Identities=11% Similarity=0.269 Sum_probs=50.8
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~ 131 (184)
+....|.++..|+.+.+.. .+....... |....+|+.+.+..+ ++......|.++.+|+.+.+..+ ++ .+..
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~ 350 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESV----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE 350 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred ecCcccccccccccccCCC-cccccCcee----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence 4445555666666666643 233333333 666666776666543 33233455666667777766543 44 5555
Q ss_pred hhhcCCCCCcEEECCCCC
Q 038485 132 KELDSLRDLEELDIGGNK 149 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls~N~ 149 (184)
.+|..|++|+.+++.++.
T Consensus 351 ~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECCce
Confidence 566777777777666553
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.99 E-value=0.0021 Score=50.66 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~ 131 (184)
+....|..+..|+.+.+..+ +....... |..+++|+.+.+..+.+.......|..+.+|+.+.+..+ ++ .+..
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 326 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLL----CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQV 326 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTT----TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred eCccccceeehhcccccccc-ceeccccc----cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHH
Confidence 33444455555555555432 22222222 555556666666555554333445555666666666433 33 4444
Q ss_pred hhhcCCCCCcEEECC
Q 038485 132 KELDSLRDLEELDIG 146 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls 146 (184)
.+|..|++|+.+.+.
T Consensus 327 ~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 327 YAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCCCCCC
T ss_pred HHhhCCCCCCEEEEC
Confidence 455566666655553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.92 E-value=0.0063 Score=47.87 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=76.0
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~ 131 (184)
+....|..+..|+.+.+..+ +....... |.....|+.+.+..+ +.......|..+.+|+.+.+.++.++ .++.
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~ 303 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEP 303 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceeccccccccccccccccccccccc-eehh
Confidence 55566777888888888765 44444444 777888888888654 44344567888999999999988887 7777
Q ss_pred hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485 132 KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL 171 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l 171 (184)
..|..|.+|+.+.+..+ ++.... .+|...++|+.+.+
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~i 340 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCCCCC
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEE
Confidence 78999999999999644 544322 34444444444433
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.87 E-value=0.0061 Score=48.40 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=35.8
Q ss_pred hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCC
Q 038485 85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148 (184)
Q Consensus 85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N 148 (184)
|....+|+.+.+..+ +.......|..+.+|+.+++..+ ++ .+....|..|++|+.+.+..+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 455566666666543 33233455666677777776543 44 555556667777777766544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.66 E-value=0.012 Score=46.70 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=80.5
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~ 131 (184)
+....|..+..|+.+.+..+.. ...... |...+.|+.+.+.. .+.......|..+.+|+.+.+..+ ++ .+..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~a----F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~ 327 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGA----FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD 327 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTT----TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred cccceeeecccccEEecccccc-eecCcc----cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence 4456788899999999876543 233343 78889999999864 455344667889999999999765 55 6666
Q ss_pred hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485 132 KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF 175 (184)
Q Consensus 132 ~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~ 175 (184)
..|..|.+|+.+.+..+ ++... ..+|...++|+.+.+.++.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCce
Confidence 68999999999998643 55432 3556666666666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0058 Score=41.07 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=38.0
Q ss_pred EEecCCCCCC--ccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485 38 ALDLSDTYGG--EYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN 102 (184)
Q Consensus 38 ~L~l~~n~l~--~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~ 102 (184)
.++-+++.++ . +|... -.+++.|++++|.++...+.. |..+++|+.+++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~---vP~~l---p~~l~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWAS---LPTAF---PVDTTELVLTGNNLTALPPGL----LDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTT---SCSCC---CTTCSEEECTTSCCSSCCTTT----GGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCcccc---CCCCC---CcCCCEEECCCCcCCccChhh----hhhccccCEEEecCCCee
Confidence 5666677666 4 55332 245788888888888766655 777778888888877764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0028 Score=42.62 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=34.2
Q ss_pred EEeCCCCcCC-CcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCcccc
Q 038485 65 SLDLTDNKIA-SCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLE 126 (184)
Q Consensus 65 ~L~ls~n~l~-~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 126 (184)
.++.+++.++ ...|. .-.++++.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~------~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT------AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS------CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC------CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 12332 12335777777777777444555666777777777777653
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.40 E-value=0.0055 Score=48.63 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=67.3
Q ss_pred cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485 53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK 132 (184)
Q Consensus 53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~ 132 (184)
+...|..+.+|+.+.+..+ +....... |....+|+.+++..+ ++......|.++.+|+.+.+..+ ++ .+...
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~ 360 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEA----FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGAN 360 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTT----TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred ccccccccccccccccccc-cceechhh----hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHH
Confidence 3455677788888888664 54444444 888999999999754 55455678999999999999876 65 67777
Q ss_pred hhcCCCCCcEEECCCC
Q 038485 133 ELDSLRDLEELDIGGN 148 (184)
Q Consensus 133 ~~~~~~~L~~L~ls~N 148 (184)
+|..|++|+.+++..+
T Consensus 361 aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR 376 (394)
T ss_dssp TBTTCTTCCEEEEEGG
T ss_pred HhhCCCCCCEEEECCC
Confidence 8999999999998643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.72 E-value=23 Score=22.01 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=26.5
Q ss_pred ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC
Q 038485 52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN 99 (184)
Q Consensus 52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n 99 (184)
+....|.++..|+.+.+-.+ ++...... |....+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~a----F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGM----FSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTS----STTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHH----HhccCCccEEEEcCC
Confidence 66677777777777777654 34343433 666666666665543
Done!