Query 038487
Match_columns 472
No_of_seqs 141 out of 756
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 9E-137 2E-141 1086.2 48.1 470 1-472 1-476 (497)
2 PLN02596 hexokinase-like 100.0 8E-136 2E-140 1076.1 49.9 469 1-472 2-471 (490)
3 PLN02362 hexokinase 100.0 1E-134 3E-139 1072.4 47.1 469 1-472 1-485 (509)
4 PLN02914 hexokinase 100.0 2E-131 5E-136 1042.5 41.5 435 35-472 34-474 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 1E-121 3E-126 954.3 39.3 434 28-472 17-454 (474)
6 PTZ00107 hexokinase; Provision 100.0 5E-119 1E-123 946.8 43.4 412 39-472 8-447 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 7E-104 2E-108 801.6 36.6 429 34-472 13-446 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 7.3E-64 1.6E-68 491.0 18.9 223 245-472 1-228 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 4.3E-61 9.2E-66 459.8 18.7 202 37-243 2-206 (206)
10 TIGR00744 ROK_glcA_fam ROK fam 98.9 5.6E-07 1.2E-11 91.2 25.8 289 100-470 1-293 (318)
11 PRK09698 D-allose kinase; Prov 98.8 1.4E-06 3E-11 87.9 23.1 271 96-470 3-279 (302)
12 PRK13310 N-acetyl-D-glucosamin 98.7 1E-05 2.3E-10 81.6 24.4 279 99-470 2-285 (303)
13 PRK09557 fructokinase; Reviewe 98.6 4.4E-05 9.6E-10 77.0 26.7 259 99-457 2-272 (301)
14 PRK12408 glucokinase; Provisio 98.5 6.6E-06 1.4E-10 84.8 18.9 270 92-455 10-302 (336)
15 PRK05082 N-acetylmannosamine k 98.5 6.9E-05 1.5E-09 75.2 25.6 255 99-456 3-260 (291)
16 COG1940 NagC Transcriptional r 98.3 5.5E-05 1.2E-09 76.7 19.9 269 95-458 4-278 (314)
17 PRK13311 N-acetyl-D-glucosamin 98.0 0.00016 3.5E-09 71.5 15.9 136 99-263 2-141 (256)
18 PRK14101 bifunctional glucokin 98.0 0.00037 8E-09 77.9 18.9 248 97-441 18-282 (638)
19 PF00480 ROK: ROK family; Int 97.9 0.00016 3.5E-09 66.9 12.1 129 101-263 1-136 (179)
20 PTZ00288 glucokinase 1; Provis 97.8 0.00088 1.9E-08 70.9 17.4 222 60-330 5-271 (405)
21 PRK00292 glk glucokinase; Prov 97.8 0.0025 5.5E-08 64.8 19.5 246 98-440 3-266 (316)
22 PF01869 BcrAD_BadFG: BadF/Bad 97.7 0.00096 2.1E-08 66.3 15.5 245 100-458 1-249 (271)
23 TIGR00749 glk glucokinase, pro 97.5 0.012 2.7E-07 59.9 19.4 182 100-331 1-202 (316)
24 KOG1794 N-Acetylglucosamine ki 96.9 0.11 2.5E-06 52.3 19.1 282 96-454 2-289 (336)
25 smart00732 YqgFc Likely ribonu 96.9 0.0051 1.1E-07 51.3 8.1 48 98-155 2-49 (99)
26 PF02685 Glucokinase: Glucokin 96.5 0.006 1.3E-07 62.6 7.0 184 100-330 1-201 (316)
27 COG2971 Predicted N-acetylgluc 96.0 2.1 4.5E-05 43.6 22.6 255 98-453 6-273 (301)
28 PF00370 FGGY_N: FGGY family o 95.2 0.085 1.8E-06 51.5 8.6 59 99-160 2-63 (245)
29 TIGR01315 5C_CHO_kinase FGGY-f 92.4 0.46 1E-05 52.2 8.5 60 99-161 2-64 (541)
30 PRK10939 autoinducer-2 (AI-2) 92.1 0.69 1.5E-05 50.5 9.4 61 98-161 4-69 (520)
31 TIGR01314 gntK_FGGY gluconate 90.5 0.67 1.5E-05 50.4 7.3 59 99-160 2-63 (505)
32 TIGR01311 glycerol_kin glycero 90.3 0.63 1.4E-05 50.4 6.8 60 99-161 3-65 (493)
33 PRK13318 pantothenate kinase; 89.9 4.5 9.8E-05 40.0 12.0 95 234-337 113-210 (258)
34 TIGR01234 L-ribulokinase L-rib 89.6 1.1 2.3E-05 49.3 8.0 60 99-161 3-77 (536)
35 PRK00047 glpK glycerol kinase; 89.5 0.76 1.6E-05 49.9 6.6 61 98-161 6-69 (498)
36 PRK15027 xylulokinase; Provisi 89.2 0.96 2.1E-05 48.9 7.1 60 98-160 1-63 (484)
37 TIGR01312 XylB D-xylulose kina 88.2 0.99 2.1E-05 48.4 6.4 59 100-161 1-62 (481)
38 PTZ00294 glycerol kinase-like 88.0 1.3 2.9E-05 48.1 7.3 61 98-161 3-66 (504)
39 PRK10331 L-fuculokinase; Provi 87.5 1.8 3.9E-05 46.6 7.9 60 98-160 3-67 (470)
40 COG1070 XylB Sugar (pentulose 87.4 1.1 2.3E-05 48.9 6.2 61 98-160 5-68 (502)
41 PLN02295 glycerol kinase 86.7 1.8 3.9E-05 47.3 7.4 60 99-161 2-64 (512)
42 TIGR02628 fuculo_kin_coli L-fu 85.7 2.4 5.2E-05 45.6 7.6 58 99-159 3-65 (465)
43 COG0837 Glk Glucokinase [Carbo 84.5 17 0.00036 37.3 12.3 185 98-333 7-208 (320)
44 PRK04123 ribulokinase; Provisi 82.7 4.1 8.9E-05 44.8 8.0 61 98-161 4-74 (548)
45 TIGR02627 rhamnulo_kin rhamnul 81.1 3.4 7.4E-05 44.3 6.5 59 100-158 1-63 (454)
46 PRK13321 pantothenate kinase; 80.1 3.5 7.6E-05 40.8 5.7 47 99-154 2-48 (256)
47 TIGR01174 ftsA cell division p 73.3 83 0.0018 32.7 14.0 129 99-239 2-188 (371)
48 TIGR01175 pilM type IV pilus a 72.3 27 0.00057 35.7 9.9 102 98-219 4-107 (348)
49 PRK13410 molecular chaperone D 70.5 10 0.00022 43.0 6.9 19 97-115 2-20 (668)
50 CHL00094 dnaK heat shock prote 66.1 13 0.00027 41.8 6.4 18 98-115 3-20 (621)
51 PTZ00186 heat shock 70 kDa pre 64.6 22 0.00047 40.4 7.9 20 96-115 26-45 (657)
52 TIGR02707 butyr_kinase butyrat 62.6 2E+02 0.0044 30.0 25.3 54 400-457 268-321 (351)
53 PTZ00400 DnaK-type molecular c 60.7 21 0.00045 40.5 6.9 19 97-115 41-59 (663)
54 PRK05183 hscA chaperone protei 59.5 14 0.00031 41.4 5.4 19 97-115 19-37 (616)
55 COG5146 PanK Pantothenate kina 59.2 28 0.00061 34.6 6.5 173 99-306 20-200 (342)
56 PRK00290 dnaK molecular chaper 56.8 16 0.00035 41.0 5.2 18 98-115 3-20 (627)
57 PLN02669 xylulokinase 55.4 34 0.00073 38.0 7.3 64 89-158 3-82 (556)
58 PRK13324 pantothenate kinase; 55.4 57 0.0012 32.6 8.3 103 99-245 2-104 (258)
59 PTZ00009 heat shock 70 kDa pro 55.4 29 0.00062 39.3 6.9 19 97-115 4-22 (653)
60 PRK15080 ethanolamine utilizat 52.7 90 0.0019 31.1 9.2 114 91-238 18-131 (267)
61 KOG2517 Ribulose kinase and re 52.4 1.2E+02 0.0026 33.5 10.6 95 96-202 5-103 (516)
62 COG1069 AraB Ribulose kinase [ 51.7 56 0.0012 36.1 7.9 97 98-200 4-103 (544)
63 COG0554 GlpK Glycerol kinase [ 51.7 34 0.00074 37.2 6.2 105 97-215 5-119 (499)
64 PLN03184 chloroplast Hsp70; Pr 49.9 37 0.0008 38.6 6.7 18 98-115 40-57 (673)
65 COG4972 PilM Tfp pilus assembl 47.1 43 0.00093 34.8 5.9 127 98-226 11-168 (354)
66 PRK13411 molecular chaperone D 44.2 68 0.0015 36.3 7.6 19 97-115 2-20 (653)
67 TIGR00241 CoA_E_activ CoA-subs 44.1 48 0.001 32.5 5.7 47 394-453 181-227 (248)
68 TIGR02350 prok_dnaK chaperone 44.0 31 0.00068 38.4 4.9 17 99-115 2-18 (595)
69 PRK03657 hypothetical protein; 40.7 98 0.0021 29.1 6.9 69 48-119 70-146 (170)
70 COG3894 Uncharacterized metal- 38.5 61 0.0013 35.6 5.7 154 90-266 157-348 (614)
71 PF00012 HSP70: Hsp70 protein; 37.1 59 0.0013 35.8 5.7 25 95-119 186-210 (602)
72 TIGR01991 HscA Fe-S protein as 37.1 80 0.0017 35.3 6.7 16 100-115 2-17 (599)
73 PF11215 DUF3010: Protein of u 36.9 93 0.002 28.3 5.8 59 99-161 3-61 (138)
74 COG4619 ABC-type uncharacteriz 36.8 3.8E+02 0.0082 25.8 9.9 128 306-459 53-182 (223)
75 PRK13411 molecular chaperone D 35.1 69 0.0015 36.3 5.8 24 96-119 185-208 (653)
76 TIGR02350 prok_dnaK chaperone 34.0 78 0.0017 35.2 6.0 24 96-119 182-205 (595)
77 PF02419 PsbL: PsbL protein; 33.9 40 0.00087 23.5 2.3 29 307-335 2-30 (37)
78 PF05402 PqqD: Coenzyme PQQ sy 33.0 1E+02 0.0022 23.6 4.8 34 36-69 30-63 (68)
79 COG4071 Uncharacterized protei 32.7 57 0.0012 31.8 4.0 59 206-265 143-204 (278)
80 KOG3127 Deoxycytidylate deamin 31.1 26 0.00057 34.2 1.4 23 233-255 73-95 (230)
81 CHL00094 dnaK heat shock prote 30.5 92 0.002 35.0 5.9 23 97-119 187-209 (621)
82 PRK00753 psbL photosystem II r 29.7 62 0.0013 22.8 2.6 29 307-335 4-32 (39)
83 PRK00290 dnaK molecular chaper 29.7 86 0.0019 35.2 5.4 23 97-119 185-207 (627)
84 PTZ00186 heat shock 70 kDa pre 28.7 98 0.0021 35.2 5.7 23 97-119 212-234 (657)
85 PRK13410 molecular chaperone D 28.6 1.1E+02 0.0023 35.0 5.9 24 96-119 186-209 (668)
86 PTZ00009 heat shock 70 kDa pro 28.1 96 0.0021 35.1 5.5 24 96-119 193-216 (653)
87 COG1546 CinA Uncharacterized p 28.0 1E+02 0.0022 28.8 4.6 68 49-119 65-140 (162)
88 COG3734 DgoK 2-keto-3-deoxy-ga 28.0 49 0.0011 33.7 2.7 23 96-118 4-26 (306)
89 PRK10753 transcriptional regul 27.5 1.4E+02 0.0031 24.7 5.1 35 40-74 5-39 (90)
90 KOG3232 Vacuolar assembly/sort 27.3 3.6E+02 0.0077 25.6 8.0 18 33-50 109-126 (203)
91 PF14574 DUF4445: Domain of un 27.3 1.1E+02 0.0023 33.0 5.3 19 100-118 4-22 (412)
92 TIGR00987 himA integration hos 26.0 1.5E+02 0.0033 24.6 5.1 36 39-74 5-40 (96)
93 PLN03184 chloroplast Hsp70; Pr 25.9 1.1E+02 0.0024 34.8 5.5 24 96-119 223-246 (673)
94 PRK01433 hscA chaperone protei 25.5 1.4E+02 0.003 33.6 6.1 149 90-255 12-201 (595)
95 PRK13928 rod shape-determining 25.5 4.7E+02 0.01 26.6 9.6 45 206-252 108-152 (336)
96 CHL00038 psbL photosystem II p 25.0 72 0.0016 22.4 2.3 30 307-336 3-32 (38)
97 PRK05183 hscA chaperone protei 24.8 1E+02 0.0022 34.7 4.9 24 96-119 200-223 (616)
98 smart00411 BHL bacterial (prok 24.8 1.7E+02 0.0037 23.6 5.1 36 39-74 4-39 (90)
99 TIGR03123 one_C_unchar_1 proba 24.5 52 0.0011 34.0 2.3 49 376-425 231-279 (318)
100 PRK10854 exopolyphosphatase; P 24.4 2.7E+02 0.0058 30.6 8.0 61 98-158 12-74 (513)
101 PRK00285 ihfA integration host 24.1 1.7E+02 0.0037 24.4 5.1 36 39-74 6-41 (99)
102 PF11104 PilM_2: Type IV pilus 23.9 1.3E+02 0.0028 30.9 5.2 59 101-161 1-59 (340)
103 smart00842 FtsA Cell division 23.8 2.1E+02 0.0046 26.5 6.2 57 99-160 1-59 (187)
104 TIGR02518 EutH_ACDH acetaldehy 23.0 40 0.00087 36.8 1.2 80 173-258 108-198 (488)
105 PF00216 Bac_DNA_binding: Bact 22.9 1.8E+02 0.0039 23.4 4.9 35 40-74 5-39 (90)
106 TIGR00199 cinA_cterm competenc 22.8 1.4E+02 0.0031 27.2 4.6 67 49-117 53-127 (146)
107 PTZ00400 DnaK-type molecular c 22.5 1.2E+02 0.0027 34.3 5.1 22 98-119 227-248 (663)
108 PRK03661 hypothetical protein; 22.1 1.5E+02 0.0032 27.6 4.7 69 48-118 64-140 (164)
109 PLN02544 phosphoribosylaminoim 22.0 2.6E+02 0.0057 29.6 6.9 94 313-413 154-252 (370)
110 PF13941 MutL: MutL protein 22.0 1E+02 0.0023 33.5 4.1 29 98-126 1-29 (457)
111 PRK10664 transcriptional regul 21.5 2.2E+02 0.0047 23.6 5.1 35 40-74 5-39 (90)
112 TIGR03706 exo_poly_only exopol 21.4 2.7E+02 0.0059 28.1 6.8 61 99-159 2-64 (300)
113 PF14588 YjgF_endoribonc: YjgF 20.4 3.1E+02 0.0067 25.3 6.2 58 404-461 59-122 (148)
114 PHA02436 hypothetical protein 20.2 95 0.0021 22.8 2.2 31 196-226 7-39 (52)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=9.1e-137 Score=1086.15 Aligned_cols=470 Identities=51% Similarity=0.871 Sum_probs=441.4
Q ss_pred CCcceeeeeehhhHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 038487 1 MRKEVVVVAAVSTAATIAAVAALVRQRRRRKEQRWKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTDL 80 (472)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~l 80 (472)
|+| +++.++.++++++|++++.++.+++++..+|.++.+++++|+++|++|.++|++|+++|.+||++||+++++| ++
T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s-~l 78 (497)
T PLN02405 1 MGK-VAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGS-KL 78 (497)
T ss_pred CCc-eeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCC-Cc
Confidence 788 6677777788888888888888888888888999999999999999999999999999999999999987566 89
Q ss_pred ccccccCccCCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcC
Q 038487 81 NMLLSYLASLPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 81 ~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
+||||||+++|+|+|+|+|||||||||||||++|+|+|++..+..+.+++|+||+++|.+++++||||||+||++|++++
T Consensus 79 ~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 79 KMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred ceeccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988766667777789999999999999999999999999999987
Q ss_pred CCCCCCCccccccceeEEeeeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc
Q 038487 161 PDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG 239 (472)
Q Consensus 161 ~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~ 239 (472)
+.......++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++||+|++++|+|+||||||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~ 238 (497)
T PLN02405 159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG 238 (497)
T ss_pred ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence 65433234567999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeec
Q 038487 240 RFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLV 319 (472)
Q Consensus 240 ~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmi 319 (472)
+|.+++|.||+|+|||||+||+|++++||||++..+..+.||||||||+|+++++|+|+||+++|++|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (497)
T PLN02405 239 RYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKII 318 (497)
T ss_pred hcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHH
Confidence 99999999999999999999999999999998765667889999999999988899999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038487 320 SGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEV 399 (472)
Q Consensus 320 SG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I 399 (472)
||||||||+|+||++|++++.||++..|++|.+||+|+|++||.|+.|++++++.+.++|++.|+++..+.+|+++||+|
T Consensus 319 SG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i 398 (497)
T PLN02405 319 SGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVEL 398 (497)
T ss_pred hhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987888999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccC-----ccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIE-----LKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~-----~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
|++|.+|||||+||+|+||++|+++.. .++++||||||+|+|||.|++++++++++|+|++.+++|++.+++|
T Consensus 399 ~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~D 476 (497)
T PLN02405 399 CNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSND 476 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecC
Confidence 999999999999999999999998742 1469999999999999999999999999999988778999999998
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=8.2e-136 Score=1076.07 Aligned_cols=469 Identities=73% Similarity=1.128 Sum_probs=439.3
Q ss_pred CCcceeeeeehhhHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 038487 1 MRKEVVVVAAVSTAATIAAVAALVRQRRR-RKEQRWKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTD 79 (472)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~ 79 (472)
|+| +++.+++++++++|++| .++++|. +++.+|+++++++++|+++|++|.++|++|+++|.+||++||+.+.+| +
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s-~ 78 (490)
T PLN02596 2 MRK-EVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETT-T 78 (490)
T ss_pred Ccc-eeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCC-C
Confidence 788 77888788888888888 6777776 778899999999999999999999999999999999999999986556 8
Q ss_pred cccccccCccCCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhc
Q 038487 80 LNMLLSYLASLPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNA 159 (472)
Q Consensus 80 l~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (472)
++||||||+++|+|+|+|+|||||||||||||++|+|.|++..+..+..++|+||+++|.+++++||||||+||++|+++
T Consensus 79 l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 79 LNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred CceecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998875555666677899999999999999999999999999998
Q ss_pred CCCCCCCCccccccceeEEeeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc
Q 038487 160 HPDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG 239 (472)
Q Consensus 160 ~~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~ 239 (472)
++.......++.+||||||||||+|+++++|+|++||||++++++|+||+++|++|++|+|++|+|+||+|||||||+|+
T Consensus 159 ~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ 238 (490)
T PLN02596 159 HPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGG 238 (490)
T ss_pred hccccccCcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhh
Confidence 76443222346799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeec
Q 038487 240 RFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLV 319 (472)
Q Consensus 240 ~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmi 319 (472)
+|.+++|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+...+|+|+||+++|++|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMi 318 (490)
T PLN02596 239 RYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLT 318 (490)
T ss_pred hcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHH
Confidence 99999999999999999999999999999998765667899999999999877899999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038487 320 SGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEV 399 (472)
Q Consensus 320 SG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I 399 (472)
||||||||+|+||++|++++.||++..|++|.++|+|+|++||.|+.|+++++..+.++|.+.|+++.++.+|+++||+|
T Consensus 319 SG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i 398 (490)
T PLN02596 319 SGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEV 398 (490)
T ss_pred hhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
|++|.+|||||+||+|+||++|+++...++++||||||+|+|||.|+++|++++++++|++.+.+|++.+++|
T Consensus 399 ~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~D 471 (490)
T PLN02596 399 CDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHG 471 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccC
Confidence 9999999999999999999999987544679999999999999999999999999999988888999999998
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=1.3e-134 Score=1072.36 Aligned_cols=469 Identities=45% Similarity=0.761 Sum_probs=436.6
Q ss_pred CCcceeeeeehhhHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 038487 1 MRKEVVVVAAVSTAATIAAVAALVRQRRRRKEQRWKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTDL 80 (472)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~l 80 (472)
|+| +++.++.++++++|++++.++++++++.++|.++++++++|+++|++|.++|++|+++|.+||++||+++++| ++
T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s-~l 78 (509)
T PLN02362 1 MGK-VAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGS-KL 78 (509)
T ss_pred CCc-eeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCC-CC
Confidence 788 6666677777777888888888888888888899999999999999999999999999999999999986556 89
Q ss_pred ccccccCccCCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcC
Q 038487 81 NMLLSYLASLPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 81 ~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
+||||||+++|+|+|+|+|||||||||||||++|+|.|++..+..++.++|+||+++|.+++++||||||+||++|++++
T Consensus 79 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~ 158 (509)
T PLN02362 79 KMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKE 158 (509)
T ss_pred ceecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988766565556678999999999999999999999999999987
Q ss_pred CCCCCCCccccccceeEEeeeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc
Q 038487 161 PDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG 239 (472)
Q Consensus 161 ~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~ 239 (472)
+...+.+.++++||||||||||+|+++++|+|++| |||++++++|+||+++|++||+|++++|+|+||||||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~ 238 (509)
T PLN02362 159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG 238 (509)
T ss_pred CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence 64432223467999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeec
Q 038487 240 RFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLV 319 (472)
Q Consensus 240 ~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmi 319 (472)
+|.+++|.||+|+|||||+||+|+.++|+|+++..+..+.|+||||||+|+++++|+|+||.++|++|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (509)
T PLN02362 239 HYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 318 (509)
T ss_pred hcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHH
Confidence 99999999999999999999999999999998765667789999999999988899999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038487 320 SGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEV 399 (472)
Q Consensus 320 SG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I 399 (472)
||||||||+|+||++|++++.||++ .|++|.+||+|+|++||.|+.|+++++..+..+|++.++++.++.+|+++||+|
T Consensus 319 SG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i 397 (509)
T PLN02362 319 SGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKI 397 (509)
T ss_pred hhccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999984 788899999999999999999999999999999999999987899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccC---------------ccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCc
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIE---------------LKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDN 464 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~---------------~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~ 464 (472)
|++|.+|||||+||+|+||++|+++.. .++++||||||+|+|||.|++++++++++++|++.+++
T Consensus 398 ~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~ 477 (509)
T PLN02362 398 CDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQH 477 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCce
Confidence 999999999999999999999998421 13689999999999999999999999999999888889
Q ss_pred EEEEecCC
Q 038487 465 VIVEPSHG 472 (472)
Q Consensus 465 i~~~~~~D 472 (472)
|.+++++|
T Consensus 478 v~i~~a~D 485 (509)
T PLN02362 478 VILKATED 485 (509)
T ss_pred EEEEEccC
Confidence 99999998
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=2.1e-131 Score=1042.53 Aligned_cols=435 Identities=47% Similarity=0.802 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCccccccccCccCCCCcccccEEEEEeCCCeeEEEEE
Q 038487 35 WKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTDLNMLLSYLASLPNGEEKGLYYGINLRATDFLILCA 114 (472)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V 114 (472)
..++.+++++|+++|++|.++|++|+++|.+||++||+++++| +++||||||.++|+|+|+|+|||||||||||||++|
T Consensus 34 ~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s-~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V 112 (490)
T PLN02914 34 AVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGG-DLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRV 112 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCC-CcceeccccCCCCCCCeeeEEEEEecCCceEEEEEE
Confidence 3478899999999999999999999999999999999986556 899999999999999999999999999999999999
Q ss_pred EeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEeeeeecccCCCcEEee
Q 038487 115 RLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIK 194 (472)
Q Consensus 115 ~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~ 194 (472)
+|.|++..+..+.+++|+||+++|.+++++||||||+||++|+++++..++.+.++.+||||||||||+|+++++|+|++
T Consensus 113 ~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~ 192 (490)
T PLN02914 113 QLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMK 192 (490)
T ss_pred EecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEE
Confidence 99887655666677899999999999999999999999999999876443333346799999999999999999999999
Q ss_pred e-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCCCCceEEEEeCCccceeeecccCCCCCCCCC
Q 038487 195 W-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQGP 273 (472)
Q Consensus 195 w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~ 273 (472)
| |||++++++|+||+++|++||+|++++|+|+||||||||||++++|.+++|.||+|+|||||+||+|++++|||+++.
T Consensus 193 WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~ 272 (490)
T PLN02914 193 WTKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQ 272 (490)
T ss_pred eccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhccCCCCCCCCCCcCCC
Q 038487 274 SPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMP 353 (472)
Q Consensus 274 ~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~ 353 (472)
.+..+.|+||||||+|+ +.+|+|+||+++|++|.|||+|+|||||||||||||+|+||++|++++.||++..|++|.++
T Consensus 273 ~~~~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~ 351 (490)
T PLN02914 273 KSSSGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTP 351 (490)
T ss_pred CCCCceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCC
Confidence 55677899999999996 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc-----Ccc
Q 038487 354 YLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGIVGIIKKLGRI-----ELK 428 (472)
Q Consensus 354 ~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~iaail~~~~~~-----~~~ 428 (472)
|+|+|++||+|+.|+++++..+..+|++.+++. ++.+|+++||+||++|.+|||||+||+|+||++|+++. ..+
T Consensus 352 ~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~ 430 (490)
T PLN02914 352 FALRTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGK 430 (490)
T ss_pred CccccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 999999999999999999999999999999995 89999999999999999999999999999999999874 124
Q ss_pred ceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 429 KSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 429 ~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
+++||||||+|+|||.|++++++++++++|++.+++|++++++|
T Consensus 431 ~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~D 474 (490)
T PLN02914 431 RTVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKD 474 (490)
T ss_pred eEEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccC
Confidence 69999999999999999999999999999988888999999998
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-121 Score=954.34 Aligned_cols=434 Identities=35% Similarity=0.606 Sum_probs=402.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCccccccccCccCCCCcccccEEEEEeCCC
Q 038487 28 RRRKEQRWKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTDLNMLLSYLASLPNGEEKGLYYGINLRAT 107 (472)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G~E~G~fLAlDlGGT 107 (472)
+...+.+++.+...++++++.|.+|.++|++++++|.+||++||+.+.++..++||||||.++|+|+|+|.|||||||||
T Consensus 17 ~~~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGT 96 (474)
T KOG1369|consen 17 VTAVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGT 96 (474)
T ss_pred hhhhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCC
Confidence 33344668889999999999999999999999999999999999965543149999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEeeeeecccC
Q 038487 108 DFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSHSVDQVTT 187 (472)
Q Consensus 108 nlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l 187 (472)
||||++|+|+|++. ...+.++.|+||+++|.+++++|||||++|+++|+++++.. + ..++||||||||||+|+++
T Consensus 97 n~Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~-~---~~~l~lgFTFSfP~~Q~si 171 (474)
T KOG1369|consen 97 NFRVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLK-G---ASKLPLGFTFSFPCRQTSI 171 (474)
T ss_pred ceEEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccc-c---ccccccceEEeeeeeeccc
Confidence 99999999988765 55667779999999999999999999999999999988754 1 2229999999999999999
Q ss_pred CCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCC-ceEEEEEecchhhhhccccCCCCceEEEEeCCccceeeecccC
Q 038487 188 LSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLN-MRVYALVDDTIGSLAGGRFYNRDCVAAVTLGTGTNAAYVESSQ 265 (472)
Q Consensus 188 ~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~-v~v~aivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~ 265 (472)
++|+|++| |||++++++|+||+++|++||+|++++ ++|+||+|||||||++|+|.+++|.||+|+|||||+||+|+.+
T Consensus 172 ~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 172 DKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred ccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeecc
Confidence 99999999 999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEeeccCCCCC--CCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhccCCCC
Q 038487 266 AVPKWQGPSPKSGEIVISTEWGNFSS--SSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRMAKEADLFG 343 (472)
Q Consensus 266 ~i~k~~~~~~~~~~miINtEwG~fg~--~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~~~~~~lf~ 343 (472)
+|+|+++..... .||||||||+||+ ..+|+|+||..+|++|+|||+|.||||+||||||||||++|+++.+++.||+
T Consensus 252 ~i~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~ 330 (474)
T KOG1369|consen 252 NIEKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFG 330 (474)
T ss_pred chhhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhc
Confidence 999999864333 7999999999994 5689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 038487 344 DTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGIVGIIKKLG 423 (472)
Q Consensus 344 ~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~iaail~~~~ 423 (472)
+.. +++ +|+.|.|+++|+|++|.++++..+.. +.+.||++..+.+|+..|+++|+.|++|||||+||+|+||+++++
T Consensus 331 ~~~-~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~ 407 (474)
T KOG1369|consen 331 GQS-TKL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTG 407 (474)
T ss_pred ccc-ccc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 887 667 99999999999999999999999999 777799998999999999999999999999999999999999999
Q ss_pred ccCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 424 RIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 424 ~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
+....+++||+|||+|++||.|+++|++++++|+| ...+|.+.+++|
T Consensus 408 ~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg--~~~~v~i~~s~d 454 (474)
T KOG1369|consen 408 ELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLG--PSIHVKLVLSED 454 (474)
T ss_pred ccccCceEEEeccchhHcCchHHHHHHHHHHHHhC--CCceEEEEECCC
Confidence 65557899999999999999999999999999999 346899999998
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=5.2e-119 Score=946.84 Aligned_cols=412 Identities=27% Similarity=0.479 Sum_probs=375.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC---------CCCCccccccccCccCCCCcccccEEEEEeCCCee
Q 038487 39 QTILRKFARECATPVPRLWQVANALVSEMQASLASN---------ETTTDLNMLLSYLASLPNGEEKGLYYGINLRATDF 109 (472)
Q Consensus 39 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~---------~~s~~l~MlPS~v~~lP~G~E~G~fLAlDlGGTnl 109 (472)
...++++.++|.++.++|++|+++|++||++||+++ +.| +++||||||+++|+|+|+|+|||||||||||
T Consensus 8 ~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s-~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 8 RVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNEC-SFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCC-CccccccccCCCCCCCccceEEEEecCCceE
Confidence 455677777788999999999999999999999976 245 8999999999999999999999999999999
Q ss_pred EEEEEEeCCCCccceeeeeeeeccCCccccc---------ChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEee
Q 038487 110 LILCARLGGKNEPISDLHREEISIPSDVMCC---------TSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSH 180 (472)
Q Consensus 110 RV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~---------~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSF 180 (472)
||++|+|.|++. .....++|+||+++|.+ ++++||||||+||.+|++++..... ..+.+||||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~~--~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPED--LNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhcccccc--ccccccceeEEee
Confidence 999999987643 33344689999999999 9999999999999999998762111 2357999999999
Q ss_pred eeecccCCCcEEeee-ccccc-----CCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCC----CCceEEE
Q 038487 181 SVDQVTTLSPSAIKW-KNFAA-----NDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYN----RDCVAAV 250 (472)
Q Consensus 181 P~~Qt~l~~g~Li~w-KgF~~-----~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~----~~~~iGl 250 (472)
||+|+++++|+|++| |||++ ++++|+||+++|++||+|++++|+|+||||||||||+|++|.+ ++|.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999999 99999 8999999999999999999999999999999999999999999 9999999
Q ss_pred EeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHH
Q 038487 251 TLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRR 330 (472)
Q Consensus 251 IlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRl 330 (472)
|+|||||+||+|+.... +..+.|+||||||+||+ .+|+|+||+++|+.|.|||+|+|||||||||||||+|+
T Consensus 243 IlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~~-~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rl 314 (464)
T PTZ00107 243 IIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFDS-KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRR 314 (464)
T ss_pred EEeccccceeeehhhcc-------CCCCcEEEEeeccccCC-CCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHH
Confidence 99999999999964332 23457999999999974 59999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHH
Q 038487 331 VLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARL 410 (472)
Q Consensus 331 il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L 410 (472)
||++|++++ .|+.+.++++|+|+++|+|++|+++++..+..+|.+.+++. ++.+|++++|+||++|++|||+|
T Consensus 315 vl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L 387 (464)
T PTZ00107 315 LIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQL 387 (464)
T ss_pred HHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998764 47789999999999999999999999999999999999996 88899999999999999999999
Q ss_pred HHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 411 AAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 411 ~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
+||+|+||++|+++. .++++||||||+|+|||.|+++++++++++++++ +.+|++.+++|
T Consensus 388 ~Aa~iaail~k~~~~-~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~D 447 (464)
T PTZ00107 388 AAAFIAAPAKKTRTV-QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHhCCC-CCceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccC
Confidence 999999999999873 2579999999999999999999999999999887 56999999998
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-104 Score=801.55 Aligned_cols=429 Identities=28% Similarity=0.510 Sum_probs=398.3
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCCccccccccCccCCCCcccccEEEEEeCCCeeEEEE
Q 038487 34 RWKQTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTTDLNMLLSYLASLPNGEEKGLYYGINLRATDFLILC 113 (472)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~ 113 (472)
-|+.+++.+.++++.|.+|.|+|.++.+.|.+||++||+.+++. .++|+|+||.+.|+|+|.|.|||||+||||||||+
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~-~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~ 91 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGD-FLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCL 91 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCC-ccccccccccCCCCCCCCCCEEEEecCCceEEEEE
Confidence 47788999999999999999999999999999999999944333 49999999999999999999999999999999999
Q ss_pred EEeCCCCccceeeeeeeeccCCccccc-ChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEeeeeecccCCCcEE
Q 038487 114 ARLGGKNEPISDLHREEISIPSDVMCC-TSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSA 192 (472)
Q Consensus 114 V~L~g~~~~~~~~~~~~~~Ip~~~~~~-~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~L 192 (472)
|+|+|++...+++ + ++.+|.+..+. +.++||+|||++++.|+++++... ..+++++|||||||+.|+++++|.|
T Consensus 92 V~l~g~gt~~~~~-s-ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l 166 (466)
T COG5026 92 VVLGGDGTFDIEQ-S-KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQL 166 (466)
T ss_pred EEeCCCCCccccc-C-cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceee
Confidence 9998876554443 3 34499999876 889999999999999999987543 2568999999999999999999999
Q ss_pred eee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCCCCceEEEEeCCccceeeecccCCCCCCC
Q 038487 193 IKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQ 271 (472)
Q Consensus 193 i~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~ 271 (472)
++| |||++++++|+||+++|+++|++|+++|+|+||+|||||||||+.|.++++.||+|+|||||+||+|+.+.|||++
T Consensus 167 ~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~ 246 (466)
T COG5026 167 IRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLP 246 (466)
T ss_pred EeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCcEEEeeccCCCCCCC--CCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhccCCCCCCCCC
Q 038487 272 GP-SPKSGEIVISTEWGNFSSSS--FPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRMAKEADLFGDTVPP 348 (472)
Q Consensus 272 ~~-~~~~~~miINtEwG~fg~~~--lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~~~~~~lf~~~~~~ 348 (472)
.+ .+..+.|+||+|||+|++.. ||+|+||..+|++|++||.|.||||+||+|||||+|++|+++..+|.+|.+..|+
T Consensus 247 ~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~ 326 (466)
T COG5026 247 RDDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPE 326 (466)
T ss_pred cccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchh
Confidence 43 35667899999999998654 9999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCcc
Q 038487 349 KLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGIVGIIKKLGRIELK 428 (472)
Q Consensus 349 ~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~iaail~~~~~~~~~ 428 (472)
++..|+.++|+.+|.|+.|++..++.+...+.+.|+++ .+.++++.|+++|++|.+|||||+|+.|+|++.++|.. +
T Consensus 327 ~~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~--k 403 (466)
T COG5026 327 KLTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY--K 403 (466)
T ss_pred hcccceeeecchhhhhccccccccchhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC--c
Confidence 99999999999999999999999999999999999996 88999999999999999999999999999999999952 5
Q ss_pred ceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 429 KSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 429 ~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
+..|+.|||+|++||.|++++.+++++++|++.. +|.++.++|
T Consensus 404 ~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~d 446 (466)
T COG5026 404 AYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAED 446 (466)
T ss_pred cceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEeccc
Confidence 5679999999999999999999999999996655 999999887
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=7.3e-64 Score=490.98 Aligned_cols=223 Identities=43% Similarity=0.724 Sum_probs=200.5
Q ss_pred CceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCC--CCCCCccchhhhccCCCCCcceeeeecccc
Q 038487 245 DCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSS--SFPVTEFDASLDAESLNPGSMIFEKLVSGM 322 (472)
Q Consensus 245 ~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~--~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~ 322 (472)
+|.||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999997 56789999999999653 379999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038487 323 YLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDI 402 (472)
Q Consensus 323 YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~ 402 (472)
|||||+|++|+++++++.||++..|+.|.++++|+|++||.|++|+++++..++.+|.+.++++ ++.+|++++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996 899999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhcc---cCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEecCC
Q 038487 403 VTERAARLAAAGIVGIIKKLGR---IELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPSHG 472 (472)
Q Consensus 403 V~~RaA~L~Aa~iaail~~~~~---~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~~D 472 (472)
|++|||+|+||+|+||++|+++ .+.++++||||||+|+|||.|++++++++++|+++. +.+|++.+++|
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~d 228 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSED 228 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecC
Confidence 9999999999999999999753 223589999999999999999999999999999876 56899999987
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=4.3e-61 Score=459.75 Aligned_cols=202 Identities=30% Similarity=0.564 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCCCCC-ccccccccCccCCCCcccccEEEEEeCCCeeEEEEEE
Q 038487 37 QTQTILRKFARECATPVPRLWQVANALVSEMQASLASNETTT-DLNMLLSYLASLPNGEEKGLYYGINLRATDFLILCAR 115 (472)
Q Consensus 37 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~~~s~-~l~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V~ 115 (472)
+..+.++++.++|.+|.++|++|+++|++||+.||++++++. .++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 466788888999999999999999999999999999875321 4999999999999999999999999999999999999
Q ss_pred eCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEeeeeecccCCCcEEeee
Q 038487 116 LGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIKW 195 (472)
Q Consensus 116 L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~w 195 (472)
|.|++. .+...++|+||++++.+++++||||||+||++|+++++.. +.++++||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 987752 3334568999999999999999999999999999988642 13678999999999999999999999999
Q ss_pred -cccccCCCCCchHHHHHHHHHHhcCCC-ceEEEEEecchhhhhccccCC
Q 038487 196 -KNFAANDTVEETLVTNINQALAKHDLN-MRVYALVDDTIGSLAGGRFYN 243 (472)
Q Consensus 196 -KgF~~~~v~G~dv~~lL~~al~r~~l~-v~v~aivNDTVaTlla~~y~~ 243 (472)
|||++++++|+|++++|++||+|++++ |+|+||+|||||||||++|.|
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 999999999999999999999999987 999999999999999999975
No 10
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.93 E-value=5.6e-07 Score=91.22 Aligned_cols=289 Identities=15% Similarity=0.128 Sum_probs=161.7
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEe
Q 038487 100 YGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWS 179 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (472)
+++|+|||++|++++.+.|. +.... .++.+ .+.+++++.|.+.|.+|+++.+.. ..-.+|+.++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~------~~~i~gIgva 64 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV------GHEIVAIGIG 64 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC------ccceEEEEEe
Confidence 57999999999999998653 33222 33333 245889999999999999876421 1235777788
Q ss_pred eeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc----CCCCceEEEEeCCc
Q 038487 180 HSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF----YNRDCVAAVTLGTG 255 (472)
Q Consensus 180 FP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y----~~~~~~iGlIlGTG 255 (472)
.|=.- +.++|.+...-.+... +.|+.+.|++.+ +++ +.+.||+.+..++-.+ .+.+..+.+.+|||
T Consensus 65 ~pG~v-d~~~g~~~~~~~~~w~---~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtG 134 (318)
T TIGR00744 65 APGPV-NRQRGTVYFAVNLDWK---QEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITLGTG 134 (318)
T ss_pred ccccc-cCCCCEEEecCCCCCC---CCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCc
Confidence 87321 1234554332333333 457777777655 444 4699999987665433 35678899999999
Q ss_pred cceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHH
Q 038487 256 TNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRM 335 (472)
Q Consensus 256 tNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~ 335 (472)
..++++.+-.-+.-..+....-+.|.++- |-. ..-.--....+|.+.|+.-|-+..+. +
T Consensus 135 iG~giv~~G~~~~G~~g~agEiGh~~v~~---------------~g~--~~C~cG~~gclE~~~s~~al~~~~~~----~ 193 (318)
T TIGR00744 135 LGGGIIINGEIRHGHNGVGAEIGHIRMVP---------------DGR--LLCNCGKQGCIETYASATGLVRYAKR----A 193 (318)
T ss_pred cEEEEEECCEEeecCCCCCcccCceEeCC---------------CCC--cccCCCCcchHHHHhCHHHHHHHHHH----H
Confidence 99999864211111000000111222211 000 00000123567888887765332222 1
Q ss_pred HhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 038487 336 AKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGI 415 (472)
Q Consensus 336 ~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~i 415 (472)
. ....++. .+......+......+....++ -+ ..|..+.+++++..+.+|
T Consensus 194 ~------~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~~------gD--------~~a~~i~~~~~~~L~~~i 243 (318)
T TIGR00744 194 N------AKPERAE----------VLLALGDGDGISAKHVFVAARQ------GD--------PVAVDSYREVARWAGAGL 243 (318)
T ss_pred h------ccccccc----------hhhcccccCCCCHHHHHHHHHC------CC--------HHHHHHHHHHHHHHHHHH
Confidence 1 0000100 0000000000111222222111 11 345678899999999999
Q ss_pred HHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEec
Q 038487 416 VGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPS 470 (472)
Q Consensus 416 aail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~ 470 (472)
+.++...+. -.|-+.|++.+..+.|.+.+++.+++..-+.....+.+..+
T Consensus 244 ~~~~~~~dP-----~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s 293 (318)
T TIGR00744 244 ADLASLFNP-----SAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAA 293 (318)
T ss_pred HHHHHHhCC-----CEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEc
Confidence 999886643 24788999998889999999999987643222223444443
No 11
>PRK09698 D-allose kinase; Provisional
Probab=98.79 E-value=1.4e-06 Score=87.89 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=153.3
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccce
Q 038487 96 KGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLG 175 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG 175 (472)
.+.++++|+|||++|++++.+.|. +... ..++.|.. .+.+ .++.+++.|.+++++.. . -.+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~--~i~g 64 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------A--RCHG 64 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcC-------C--CeeE
Confidence 456899999999999999999663 3322 23444432 2223 49999999999998753 1 2345
Q ss_pred eEEeee--eecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc---CCCCceEEE
Q 038487 176 YTWSHS--VDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF---YNRDCVAAV 250 (472)
Q Consensus 176 fTFSFP--~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y---~~~~~~iGl 250 (472)
+.+++| ++. +.+.++....+..++..+.++.+.|++.+ ++| +.+.||..+..++-.+ ...+..+.+
T Consensus 65 igia~pG~vd~---~~g~i~~~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v 135 (302)
T PRK09698 65 IVMGFPALVSK---DRRTVISTPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGA 135 (302)
T ss_pred EEEeCCcceeC---CCCEEEecCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEE
Confidence 555555 542 34444433444333445678888888765 444 4699999986665332 244678999
Q ss_pred EeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHH
Q 038487 251 TLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRR 330 (472)
Q Consensus 251 IlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRl 330 (472)
-+|||.-++++.+=.-+.-..+...+-+.|.++-.. ....--..-.+|.++|+.-|-+..+.
T Consensus 136 ~lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~------------------~~C~CG~~gclE~~~S~~al~~~~~~ 197 (302)
T PRK09698 136 YLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMT------------------QHCGCGNPGCLETNCSGMALRRWYEQ 197 (302)
T ss_pred EecCceEEEEEECCEEeeCCCCCccccCceEeeCCC------------------cccCCCCccchHhhcCHHHHHHHHHH
Confidence 999999999987422111111111111223332100 00000113468888988654222110
Q ss_pred HHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHH
Q 038487 331 VLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARL 410 (472)
Q Consensus 331 il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L 410 (472)
. + ++ .+ ...+++. .+ + + .+.++.++.
T Consensus 198 -------~---~----~~-------~~-----------------~~~l~~~-~~----~-~----------~~~~~~~~~ 223 (302)
T PRK09698 198 -------Q---P----RD-------YP-----------------LSDLFVH-AG----D-H----------PFIQSLLEN 223 (302)
T ss_pred -------h---c----CC-------CC-----------------HHHHHHH-cC----C-H----------HHHHHHHHH
Confidence 0 0 00 00 0111111 11 0 0 133556667
Q ss_pred HHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhC-CCCCCcEEEEec
Q 038487 411 AAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLG-NELSDNVIVEPS 470 (472)
Q Consensus 411 ~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~-~~~~~~i~~~~~ 470 (472)
.|.+|+.++..++. -.|-+.|++.+..+.|.+.+++.+++.+- +.....+.|..+
T Consensus 224 la~~l~~li~~ldP-----~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 279 (302)
T PRK09698 224 LARAIATSINLFDP-----DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYA 279 (302)
T ss_pred HHHHHHHHHHHhCC-----CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEEC
Confidence 88888888776653 35777898888777888999999988653 212234555544
No 12
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.65 E-value=1e-05 Score=81.62 Aligned_cols=279 Identities=13% Similarity=0.108 Sum_probs=155.0
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTW 178 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (472)
++++|+|||++|++++.+.+. +.... .++.|. .+.+++.+.|++.+.++....+ ...-+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEeC
Confidence 689999999999999999653 33222 344442 2467888999998888865432 112245555
Q ss_pred eeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccC----CCCceEEEEeCC
Q 038487 179 SHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFY----NRDCVAAVTLGT 254 (472)
Q Consensus 179 SFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~----~~~~~iGlIlGT 254 (472)
.=|++. +.|++.... .++-.+-++.+.|++.+ ++| +.+-||.-+-.++-.+. +.+..+.+.+||
T Consensus 65 pG~vd~---~~g~~~~~~---~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gt 132 (303)
T PRK13310 65 PGMPET---EDGTLYAAN---VPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILGT 132 (303)
T ss_pred CCcccC---CCCEEeccC---cccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEecC
Confidence 445642 345443211 11123456667777665 454 45999998766554442 467889999999
Q ss_pred ccceeeecccCCCCCCCCCCCCCCcEEEeec-cCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHH
Q 038487 255 GTNAAYVESSQAVPKWQGPSPKSGEIVISTE-WGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLL 333 (472)
Q Consensus 255 GtNacY~e~~~~i~k~~~~~~~~~~miINtE-wG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~ 333 (472)
|.-++++.+-.-+.-..+...+-+.|.|+-. ...+|.+. |. ..-.-...-.+|...||.-+-+.+|.
T Consensus 133 GiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~-~~--------~~C~CG~~gclE~~~S~~al~~~~~~--- 200 (303)
T PRK13310 133 GVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDA-PL--------RRCGCGQKGCIENYLSGRGFEWLYQH--- 200 (303)
T ss_pred ceEEEEEECCEEeeCCCCccccccceeecccccccccccC-CC--------ccCCCCCcchHHHhhcHHHHHHHHHH---
Confidence 9999998752211111111111233433211 00000000 00 00011124678999998765433321
Q ss_pred HHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHH
Q 038487 334 RMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAA 413 (472)
Q Consensus 334 ~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa 413 (472)
+ . + . .++ ...+.+..++ -+ ..|..+.+|+++..|.
T Consensus 201 -~------~-~--~-------~~~--------------~~~l~~~~~~------gd--------~~a~~~~~~~~~~la~ 235 (303)
T PRK13310 201 -Y------Y-G--E-------PLQ--------------APEIIALYYQ------GD--------EQAVAHVERYLDLLAI 235 (303)
T ss_pred -h------c-c--C-------CCC--------------HHHHHHHHHc------CC--------HHHHHHHHHHHHHHHH
Confidence 0 0 0 0 011 1111111111 00 3455678899999999
Q ss_pred HHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhCCCCCCcEEEEec
Q 038487 414 GIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGNELSDNVIVEPS 470 (472)
Q Consensus 414 ~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~~~~~~i~~~~~ 470 (472)
+|+.++..++. + .|-+.|++.+ .+.|.+.+++.+++..-+.. ..+.|+.+
T Consensus 236 ~l~n~~~~ldP---~--~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s 285 (303)
T PRK13310 236 CLGNILTIVDP---H--LVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKA 285 (303)
T ss_pred HHHHHHHHcCC---C--EEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEc
Confidence 99999998764 2 4666788777 68888999999987543221 24555543
No 13
>PRK09557 fructokinase; Reviewed
Probab=98.58 E-value=4.4e-05 Score=77.04 Aligned_cols=259 Identities=18% Similarity=0.195 Sum_probs=149.3
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTW 178 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (472)
+|++|+|||++|++++.+.|. +... ..++.|. .+.+++.+.|++.+.++..+.. ...|+..
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgi 62 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATG----------QRGTVGV 62 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcC----------CceEEEe
Confidence 689999999999999998653 3322 2344442 2456788888888888765432 1245666
Q ss_pred eee--eecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc----CCCCceEEEE
Q 038487 179 SHS--VDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF----YNRDCVAAVT 251 (472)
Q Consensus 179 SFP--~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y----~~~~~~iGlI 251 (472)
+.| ++. ++|++... ..| ..+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+-+.
T Consensus 63 ~~pG~vd~---~~g~i~~~~~~~----~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ 129 (301)
T PRK09557 63 GIPGSISP---YTGLVKNANSTW----LNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVI 129 (301)
T ss_pred cCcccCcC---CCCeEEecCCcc----ccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEE
Confidence 665 432 34554443 322 12456777777776 344 3588999987766533 3457788999
Q ss_pred eCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccch-hh---hccCCCC-CcceeeeeccccchHH
Q 038487 252 LGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDA-SL---DAESLNP-GSMIFEKLVSGMYLGE 326 (472)
Q Consensus 252 lGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~-~l---D~~S~nP-g~q~~EKmiSG~YLGE 326 (472)
+|||.-++.+.+-.-+. + ..-.-.|.|. ++....|. .. +...-.- ..-.+|..+|+..|-+
T Consensus 130 igtGiG~giv~~G~l~~---G------~~g~aGEiGH-----~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~S~~al~~ 195 (301)
T PRK09557 130 IGTGCGAGVAINGRVHI---G------GNGIAGEWGH-----NPLPWMDEDELRYRNEVPCYCGKQGCIETFISGTGFAT 195 (301)
T ss_pred EccceEEEEEECCEEEe---c------CCCCCcccCc-----eecccccccccccCCCCcCCCCCCCEEeEEEcHHHHHH
Confidence 99999999987411111 1 1111123332 22111000 00 1000000 1356999999887644
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 038487 327 IVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTER 406 (472)
Q Consensus 327 ivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~R 406 (472)
.++.. + . . .++.+.+ .+..++ - ...+..+.++
T Consensus 196 ~~~~~-------~----~--~-------~~~~~~l--------------~~~~~~------g--------d~~a~~~l~~ 227 (301)
T PRK09557 196 DYRRL-------S----G--K-------ALKGSEI--------------IRLVEE------G--------DPVAELAFRR 227 (301)
T ss_pred HHHHh-------c----c--C-------CCCHHHH--------------HHHHHc------C--------CHHHHHHHHH
Confidence 33311 0 0 0 0111111 111111 0 0345568899
Q ss_pred hhHHHHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHh
Q 038487 407 AARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEML 457 (472)
Q Consensus 407 aA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~ 457 (472)
+++..|.+|+.++..++. + .|-+.|++... +.|.+.+++.+++.+
T Consensus 228 ~~~~La~~l~~l~~~ldP---~--~IvlgG~~~~~-~~~~~~l~~~~~~~~ 272 (301)
T PRK09557 228 YEDRLAKSLAHVINILDP---D--VIVLGGGMSNV-DRLYPTLPALLKQYV 272 (301)
T ss_pred HHHHHHHHHHHHHHHhCC---C--EEEEcCcccch-HHHHHHHHHHHHHHh
Confidence 999999999999887754 2 46677887774 778788888888754
No 14
>PRK12408 glucokinase; Provisional
Probab=98.52 E-value=6.6e-06 Score=84.82 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=146.7
Q ss_pred CCccccc-EEEEEeCCCeeEEEEEEeCCCC---ccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCC
Q 038487 92 NGEEKGL-YYGINLRATDFLILCARLGGKN---EPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDT 167 (472)
Q Consensus 92 ~G~E~G~-fLAlDlGGTnlRV~~V~L~g~~---~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~ 167 (472)
++-|++. ||++|+||||.|+++|.-.+.. ..+.. .+.++-+ .-+.|.+. |.+|+++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~--~~~~~t~------~~~~~~~~----i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLD--YRTYRCA------DYPSLAAI----LADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccc--eeEecCC------CccCHHHH----HHHHHhc-C------
Confidence 4556664 9999999999999999754431 11111 1222211 11223333 5566554 1
Q ss_pred ccccccceeEEeeeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccC----
Q 038487 168 SAKEKKLGYTWSHSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFY---- 242 (472)
Q Consensus 168 ~~~~l~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~---- 242 (472)
. -+.|..+++|=- ..++|++..- -.|. .+.+.|++. +.+..+.+.||.-+--++-.+.
T Consensus 71 -~--~~~~igIg~pG~--~~~~g~v~~~nl~w~-------~~~~~l~~~-----~~~~~V~l~ND~naaa~gE~~~~~~~ 133 (336)
T PRK12408 71 -A--PVRRGVIASAGY--ALDDGRVITANLPWT-------LSPEQIRAQ-----LGLQAVHLVNDFEAVAYAAPYMEGNQ 133 (336)
T ss_pred -C--CcCEEEEEecCC--ceECCEEEecCCCCc-------cCHHHHHHH-----cCCCeEEEeecHHHHHcccccCCHhH
Confidence 1 135666777654 1356776632 2232 112444433 3454467999999998887655
Q ss_pred ---------CC-CceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhh-hccCCCCC
Q 038487 243 ---------NR-DCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASL-DAESLNPG 311 (472)
Q Consensus 243 ---------~~-~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~l-D~~S~nPg 311 (472)
.. ...+.+.+|||..++.+.+-. .+....=.|+|... ..|.+.....+ .......+
T Consensus 134 ~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~--~~~~~~~~~~l~~~~~~~~~ 200 (336)
T PRK12408 134 VLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAA--LAAASELEMQLLQHLLRTRT 200 (336)
T ss_pred eeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcccccc--CCCCCHHHHHHHHHHHhhCC
Confidence 22 467888899999999986421 23345567777652 11222111111 11112223
Q ss_pred cceeeeeccccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHH
Q 038487 312 SMIFEKLVSGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPK 391 (472)
Q Consensus 312 ~q~~EKmiSG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~ 391 (472)
.-.+|...||.-|..+.|...... + . + ...+++..+.+ ...+ + .+
T Consensus 201 ~~~~E~~~Sg~gL~~~~~~~~~~~---~-----~-~-----~~~~~~~~v~~--------------~a~~--g---gD-- 245 (336)
T PRK12408 201 HVPIEHVLSGPGLLNLYRALCALR---G-----A-T-----PVHASPAAITA--------------AALA--G---DD-- 245 (336)
T ss_pred ceeHhheecHHHHHHHHHHHHhhc---C-----C-C-----cccCCHHHHHH--------------HHHh--C---CC--
Confidence 346899999999988777542110 0 0 0 00112222111 1000 0 01
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceeee-cHhHHHH--HHHHHHH
Q 038487 392 AREAVVEVCDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEH-YRIFRNY--LHSSVWE 455 (472)
Q Consensus 392 d~~~vr~I~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~-~p~y~~~--l~~~l~~ 455 (472)
.+|..+.++.++..|.+++-+...++. ..-|-+-|++-.. .+.+.+. +++.+++
T Consensus 246 ------~~A~~~~~~~~~~La~~i~nl~~~ldP----e~GIvIGGGIs~~~~~~l~~~~f~~~~~~~ 302 (336)
T PRK12408 246 ------ALAHEALQVFCGFLGSVVGDMALAYGA----RGGVYLAGGILPQIADFLARSDFVERFLNK 302 (336)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHCC----CceEEEECchhHhHHhhhcCHHHHHHHhcc
Confidence 345567788888899999998887764 2226677888654 3444443 5555554
No 15
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=98.51 E-value=6.9e-05 Score=75.22 Aligned_cols=255 Identities=13% Similarity=0.102 Sum_probs=147.1
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTW 178 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (472)
++++|+|||++|+.++.+.|. +... ..++.|.. .+.+++.+.|++.+.++..+ ...+|+.+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~--~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQR--RQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEE--EEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999763 3322 23455432 34567888888888877531 13366666
Q ss_pred eeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc---CCCCceEEEEeCCc
Q 038487 179 SHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF---YNRDCVAAVTLGTG 255 (472)
Q Consensus 179 SFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y---~~~~~~iGlIlGTG 255 (472)
.-|++ ++....+......+..+.|+.+.|++.+ ++| +.+.||..+..++-.+ .+.+..+-+-+|||
T Consensus 64 pG~vd-----~~~~~~~~~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G 132 (291)
T PRK05082 64 TGIIN-----DGILTALNPHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG 132 (291)
T ss_pred ccccc-----CCeeEEecCCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC
Confidence 66664 2222211111122234567777777654 444 4599999987766543 35567899999999
Q ss_pred cceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHH
Q 038487 256 TNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRM 335 (472)
Q Consensus 256 tNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~ 335 (472)
.-++++-.-.-..-. |-..|-+| +++. |.. .....--..-.+|.++|+..| .|.
T Consensus 133 iG~giv~~G~~~~G~------------~g~AGEiG--h~~v---~~~-g~~c~CG~~GclE~~~S~~al---~~~----- 186 (291)
T PRK05082 133 VGGGIVLNGKLLTGP------------GGLAGHIG--HTLA---DPH-GPVCGCGRRGCVEAIASGRAI---AAA----- 186 (291)
T ss_pred cceEEEECCEEeeCC------------CCcccccc--ceEe---cCC-CCCCCCCCcCchhhhcCHHHH---HHH-----
Confidence 999998742111111 11122222 1111 110 000011123488999998766 232
Q ss_pred HhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 038487 336 AKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGI 415 (472)
Q Consensus 336 ~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~i 415 (472)
.+. ++ + ..+ ...+.+...+ -+ ..|..+.+++++..|.+|
T Consensus 187 ~~~--~~----~-------~~~--------------~~~i~~~~~~------gd--------~~a~~~~~~~~~~la~~l 225 (291)
T PRK05082 187 AQG--WL----A-------GCD--------------AKTIFERAGQ------GD--------EQAQALINRSAQAIARLI 225 (291)
T ss_pred HHH--hh----c-------CCC--------------HHHHHHHHHc------CC--------HHHHHHHHHHHHHHHHHH
Confidence 111 00 0 001 1111111111 11 235567889999999999
Q ss_pred HHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHH
Q 038487 416 VGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEM 456 (472)
Q Consensus 416 aail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l 456 (472)
+.++..++. + .|-+.|++.. .+.|.+.+++++++.
T Consensus 226 ~~l~~~~dp---e--~IvlgG~~~~-~~~~~~~i~~~l~~~ 260 (291)
T PRK05082 226 ADLKATLDC---Q--CVVLGGSVGL-AEGYLELVQAYLAQE 260 (291)
T ss_pred HHHHHHhCC---C--EEEEcCcccc-HHHHHHHHHHHHHhc
Confidence 999988764 2 4666787654 577888999999885
No 16
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.33 E-value=5.5e-05 Score=76.70 Aligned_cols=269 Identities=19% Similarity=0.207 Sum_probs=159.4
Q ss_pred ccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccc
Q 038487 95 EKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKL 174 (472)
Q Consensus 95 E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~l 174 (472)
+...+++||+|||+++++++.+.|+ +.. .+..+.|.... .+++.+-|++.+.++++... . ..-.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~--~~~~~~~~~~~---~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILL--RERIPTPTPDP---EEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEE--EEEEecCCCCc---hhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 3457899999999999999999764 222 12344444322 15788999999999988753 1 12457
Q ss_pred eeEEeeeeecccCCCcE-EeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccC----CCCceEE
Q 038487 175 GYTWSHSVDQVTTLSPS-AIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFY----NRDCVAA 249 (472)
Q Consensus 175 GfTFSFP~~Qt~l~~g~-Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~----~~~~~iG 249 (472)
|+-++-|..-.. +. +..+-.+.. ..+-|+.+.|++.+. +|| .|-||+.+.-++-++. +.+..+-
T Consensus 69 GIgi~~pg~~~~---~~~~~~~~~~~~--~~~~~l~~~L~~~~~---~Pv---~veNDan~aalaE~~~g~~~~~~~~~~ 137 (314)
T COG1940 69 GIGIPGPGDVDN---GTVIVPAPNLGW--WNGVDLAEELEARLG---LPV---FVENDANAAALAEAWFGAGRGIDDVVY 137 (314)
T ss_pred EEEeccceeccC---CcEEeecCCCCc--cccccHHHHHHHHHC---CCE---EEecHHHHHHHHHHHhCCCCCCCCEEE
Confidence 777777766333 22 222222211 123556677776663 444 6889999999888875 3578999
Q ss_pred EEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHH
Q 038487 250 VTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVR 329 (472)
Q Consensus 250 lIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivR 329 (472)
+.+|||.-++++..-.-..-..+....-+.|+++-.+. ..-+..-.+|...|+..+-+-.
T Consensus 138 i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~-------------------c~cG~~GclE~~as~~al~~~~- 197 (314)
T COG1940 138 ITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE-------------------CGCGRRGCLETYASGRAILRRA- 197 (314)
T ss_pred EEEccceeEEEEECCEEeecCCCccccccceEECCCCc-------------------cCCCCCCchHHhccHHHHHHHH-
Confidence 99999999999875221111111111122344433322 1122345678888887664432
Q ss_pred HHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhH
Q 038487 330 RVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAAR 409 (472)
Q Consensus 330 lil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~ 409 (472)
.+. .+..... .+.+ .+++. ..- -+ ..+..+.++.+.
T Consensus 198 ------~~~-------~~~~~~~---~~~~-----------------~i~~~-a~~--gd--------~~a~~~~~~~~~ 233 (314)
T COG1940 198 ------AEA-------LESEAGE---LTAK-----------------DIFEL-AAA--GD--------PLAKEVIERAAD 233 (314)
T ss_pred ------Hhh-------ccccccC---cCHH-----------------HHHHH-HHc--CC--------HHHHHHHHHHHH
Confidence 100 0000000 1111 11111 100 00 345568899999
Q ss_pred HHHHHHHHHHHHhcccCccceEEEEec-ceeeecHhHHHHHHHHHHHHhC
Q 038487 410 LAAAGIVGIIKKLGRIELKKSVVNVEG-GLYEHYRIFRNYLHSSVWEMLG 458 (472)
Q Consensus 410 L~Aa~iaail~~~~~~~~~~~~V~vdG-S~~~~~p~y~~~l~~~l~~l~~ 458 (472)
..|.+|+.++.-.+. -.|-+.| ++-...+.+.+.++..+.....
T Consensus 234 ~la~~ianl~~~~~P-----~~IvigG~g~~~~~~~~~~~l~~~~~~~~~ 278 (314)
T COG1940 234 YLARGLANLINLLDP-----EVIVIGGGGVSALGDLLLPRLRKLLAKYLF 278 (314)
T ss_pred HHHHHHHHHHHhcCC-----CeEEEECcccccchhHHHHHHHHHHHHhhc
Confidence 999999999887754 2455677 7777778888888888776554
No 17
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.04 E-value=0.00016 Score=71.47 Aligned_cols=136 Identities=10% Similarity=0.059 Sum_probs=90.7
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTW 178 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (472)
|+++|+|||++|++++.+.++ +... +.++.|. .+.+++.+.+.+.+.++..... ...|..+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgv 62 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG----------VQGSVGI 62 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC----------CCceEEE
Confidence 799999999999999998663 3322 2455553 2346788888888877743321 2347777
Q ss_pred eeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccC----CCCceEEEEeCC
Q 038487 179 SHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFY----NRDCVAAVTLGT 254 (472)
Q Consensus 179 SFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~----~~~~~iGlIlGT 254 (472)
|.|=-- +.+.|++ .+.. .++-.+.++.+.|++.+ ++| +.+-||+-+.-++-.+. +.+..+.+.+||
T Consensus 63 ~~pG~v-d~~~g~i-~~~~--~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgt 132 (256)
T PRK13311 63 GIPGLP-NADDGTV-FTAN--VPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILGT 132 (256)
T ss_pred EecCcE-ECCCCEE-EccC--CCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECc
Confidence 787421 1234553 3321 12223568888888776 344 46999988776665443 457889999999
Q ss_pred ccceeeecc
Q 038487 255 GTNAAYVES 263 (472)
Q Consensus 255 GtNacY~e~ 263 (472)
|.-++.+-.
T Consensus 133 GiG~giv~~ 141 (256)
T PRK13311 133 GVGGGLIVN 141 (256)
T ss_pred CeEEEEEEC
Confidence 999999875
No 18
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.97 E-value=0.00037 Score=77.88 Aligned_cols=248 Identities=14% Similarity=0.133 Sum_probs=129.1
Q ss_pred ccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCcccccccee
Q 038487 97 GLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGY 176 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (472)
|-+|++|+||||.|++++.-+| .+... +.++-+. |+.+.+.|.+|+++.+. . -+-|.
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g---~i~~~--~~~~t~~----------~~~~~~~i~~~l~~~~~------~--~~~~i 74 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPG---EITQI--RVYPGAD----------YPTLTDAIRKYLKDVKI------G--RVNHA 74 (638)
T ss_pred CCEEEEEcCchhheeeeecCCC---cccce--eEEecCC----------CCCHHHHHHHHHHhcCC------C--CcceE
Confidence 4599999999999999984322 22221 2232211 35566777777765431 1 23455
Q ss_pred EEeee--eecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc---------ccC---
Q 038487 177 TWSHS--VDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG---------RFY--- 242 (472)
Q Consensus 177 TFSFP--~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~---------~y~--- 242 (472)
.++.| ++...+... =+.|+ | ++ +.|++. +.+.++.+.||.-+.-++- .+.
T Consensus 75 gig~pGpVd~~~~~~~-nl~w~-~--------~~-~~l~~~-----~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 75 AIAIANPVDGDQVRMT-NHDWS-F--------SI-EATRRA-----LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEEecCccCCeeeec-CCCcE-e--------cH-HHHHHH-----cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 55555 552211100 01231 1 22 444443 3555678999999988873 111
Q ss_pred CCCceEEEEeCC--ccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhh-hccCCCCCcceeeeec
Q 038487 243 NRDCVAAVTLGT--GTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASL-DAESLNPGSMIFEKLV 319 (472)
Q Consensus 243 ~~~~~iGlIlGT--GtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~l-D~~S~nPg~q~~EKmi 319 (472)
..+..+.+++|| |...|.+-.. ..+.++.-+|+|...- .|.++-...+ .....+.|.-.+|...
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~-----------~g~~~~~g~E~GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E~~~ 205 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPA-----------DDRWIALGSEGGHASF--APQDEREDLVLQYARKKYPHVSFERVC 205 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEec-----------CCeeEECCCCccccCC--CCCCHHHHHHHHHHHHhcCcceeeeec
Confidence 223457788754 5665433211 1122444568887631 2333211111 0011123445699999
Q ss_pred cccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038487 320 SGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEV 399 (472)
Q Consensus 320 SG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I 399 (472)
||.-|..+.|...... +. + .+-.++... +++. .. .-+ .+
T Consensus 206 Sg~gL~~~~~~~~~~~---~~------~----~~~~~~~~~-----------------i~~~-a~--~gd--------~~ 244 (638)
T PRK14101 206 AGPGMEIIYRALAARD---KK------R----VAANVDTAE-----------------IVER-AH--AGD--------AL 244 (638)
T ss_pred chhhHHHHHHHHHhhc---CC------C----CcCcCCHHH-----------------HHHH-HH--CCC--------HH
Confidence 9999998887643210 00 0 000111111 2111 00 011 45
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceeee
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEH 441 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~ 441 (472)
|..+.++.+++.|.+++-+....+.. . .|-+-|++-.+
T Consensus 245 A~~~~~~~~~~lg~~~~nl~~~~~~p--~--~vvigGGIs~~ 282 (638)
T PRK14101 245 ALEAVECFCAILGTFAGNLALTLGAL--G--GIYIGGGVVPK 282 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--C--cEEEeCcHHHH
Confidence 66788888899999999888877520 2 35577888644
No 19
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.89 E-value=0.00016 Score=66.94 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=93.1
Q ss_pred EEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEee
Q 038487 101 GINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSH 180 (472)
Q Consensus 101 AlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSF 180 (472)
+||+|+|++|++++.+.|+ ++.+. .+++| .+.+++.+.+.+.+.+++.+.+ .. |+.+|+
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~--------~~---gIgi~~ 59 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYG--------RS---GIGISV 59 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHT--------CE---EEEEEE
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhcc--------cc---cEEEec
Confidence 5899999999999999763 34332 45555 4568899999999999988753 11 667777
Q ss_pred e--eecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc----CCCCceEEEEeC
Q 038487 181 S--VDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF----YNRDCVAAVTLG 253 (472)
Q Consensus 181 P--~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y----~~~~~~iGlIlG 253 (472)
| ++. +++.++.. . . +..+.++.+.|++.+ + + .+.+.||..+..++-.+ .+.+..+-+-+|
T Consensus 60 pG~v~~---~~g~i~~~~~-~---~~~~~~l~~~l~~~~---~--~-pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig 126 (179)
T PF00480_consen 60 PGIVDS---EKGRIISSPN-P---GWENIPLKEELEERF---G--V-PVIIENDANAAALAEYWFGAAKDCDNFLYLYIG 126 (179)
T ss_dssp SSEEET---TTTEEEECSS-G---TGTTCEHHHHHHHHH---T--S-EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEES
T ss_pred cccCcC---CCCeEEecCC-C---CcccCCHHHHhhccc---c--e-EEEEecCCCcceeehhhcCccCCcceEEEEEee
Confidence 6 553 23566655 4 2 334588899999887 2 3 44699999987666544 245688889999
Q ss_pred Cccceeeecc
Q 038487 254 TGTNAAYVES 263 (472)
Q Consensus 254 TGtNacY~e~ 263 (472)
||.-++++..
T Consensus 127 ~GiG~~ii~~ 136 (179)
T PF00480_consen 127 TGIGAGIIIN 136 (179)
T ss_dssp SSEEEEEEET
T ss_pred cCCCcceecc
Confidence 9999999864
No 20
>PTZ00288 glucokinase 1; Provisional
Probab=97.81 E-value=0.00088 Score=70.89 Aligned_cols=222 Identities=17% Similarity=0.129 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhhccCCCCCccccccccCccCCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccc
Q 038487 60 ANALVSEMQASLASNETTTDLNMLLSYLASLPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMC 139 (472)
Q Consensus 60 ~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~ 139 (472)
...|++++.+.++++. +|-. . +.+++.|+||||.|+++.++...+....... .+++| +..
T Consensus 5 ~~~~~~~~~~~~~~~~---------~~~~-~------~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~ 64 (405)
T PTZ00288 5 DEIFLEQLAEELKTDA---------SWSS-G------PIFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTK 64 (405)
T ss_pred hHHHHHHHHHHhccCc---------cccc-C------CeEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--ccc
Confidence 3456677777776642 2221 1 2589999999999999999842211112111 23333 223
Q ss_pred cChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEeeeeecccC-CCcEEeee-cccccCCCCCchHHHHHHHHHH
Q 038487 140 CTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWSHSVDQVTT-LSPSAIKW-KNFAANDTVEETLVTNINQALA 217 (472)
Q Consensus 140 ~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l-~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~ 217 (472)
.+..++.+++++.+....+.... -+....+ +|+.|---+.- -.|...+| --+.+++. .-.+
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a-~iAvAGPV~~~~~~~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 65 TDIRELLEFFDEVLQKLKKNLSF------IQRVAAG-AISVPGPVTGGQLAGPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcc------ccCcCeE-EEEEeCceeCCEeeccccccccccccCCC-Cchh---------
Confidence 44567788888877666553210 0123334 77776321111 12344888 44555552 1111
Q ss_pred hcCCCceEEEEEecchhhhhccccCC--------------------------------CCceEEEEeCCccceeeecccC
Q 038487 218 KHDLNMRVYALVDDTIGSLAGGRFYN--------------------------------RDCVAAVTLGTGTNAAYVESSQ 265 (472)
Q Consensus 218 r~~l~v~v~aivNDTVaTlla~~y~~--------------------------------~~~~iGlIlGTGtNacY~e~~~ 265 (472)
++.+-+.++||=.|.=.+....+ ....+-+-.|||..+|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 56666789999877654433211 1234788999999999997532
Q ss_pred CCCCCCCCCCCCCcEEEeeccCCCCCCCCCCC--ccchhhhccCCCCC---------cceeeeeccccchHHHHHH
Q 038487 266 AVPKWQGPSPKSGEIVISTEWGNFSSSSFPVT--EFDASLDAESLNPG---------SMIFEKLVSGMYLGEIVRR 330 (472)
Q Consensus 266 ~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T--~~D~~lD~~S~nPg---------~q~~EKmiSG~YLGEivRl 330 (472)
.+ .+...+=+|.|.-.-+.-|.+ ++...+=+.-...+ .-.+|.++||+=|..+.|.
T Consensus 205 l~---------~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~ 271 (405)
T PTZ00288 205 VS---------DQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAY 271 (405)
T ss_pred ec---------CCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHH
Confidence 11 234567777776532111333 22122111100111 2379999999999887775
No 21
>PRK00292 glk glucokinase; Provisional
Probab=97.77 E-value=0.0025 Score=64.83 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=129.6
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhc-CCCCCCCCcccccccee
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNA-HPDNGNDTSAKEKKLGY 176 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~-~~~~~~~~~~~~l~lGf 176 (472)
.+|++|+||||+|+.++.+.++ .+.. .+.++.+. ++.+.+.+.+++++ .. . -..|.
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~----------~~~~~~~l~~~l~~~~~-------~--~~~gi 59 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD----------YPSLEDAIRAYLADEHG-------V--QVRSA 59 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceee--eEEEecCC----------CCCHHHHHHHHHHhccC-------C--CCceE
Confidence 3799999999999999997443 2222 12344331 22244555566654 21 1 23567
Q ss_pred EEeee--eecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcccc------------C
Q 038487 177 TWSHS--VDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRF------------Y 242 (472)
Q Consensus 177 TFSFP--~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y------------~ 242 (472)
.++.| ++. ++ +..-+.... . + .+.|++.+ ++..+.|.||.-+.-++-.+ .
T Consensus 60 gIg~pG~vd~-----~~-i~~~n~~w~---~-~-~~~l~~~~-----~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 60 CFAIAGPVDG-----DE-VRMTNHHWA---F-S-IAAMKQEL-----GLDHLLLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEEEeCcccC-----CE-EEecCCCcc---c-C-HHHHHHHh-----CCCeEEEEecHHHHHcccccCCHhheeEeCCCC
Confidence 77776 542 12 111111111 1 1 24444433 45435799999998888543 1
Q ss_pred C--CCceEEEEeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhh-ccCCCCCcceeeeec
Q 038487 243 N--RDCVAAVTLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLD-AESLNPGSMIFEKLV 319 (472)
Q Consensus 243 ~--~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD-~~S~nPg~q~~EKmi 319 (472)
. .+..+.+-+|||..++.+..- + .+....-.|+|... ..|.++-...+- .....-|.-.+|..+
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~GH~~--~~~~~~~~~~~~~~~c~~~~~gclE~~~ 190 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEGGHVD--FAPRSEEEAQILQYLRAEFGHVSAERVL 190 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCccccc--CCCCChHHHHHHHHHHHhcCCceeEeee
Confidence 1 256788999999999998642 1 22344566777542 112111100000 001112345799999
Q ss_pred cccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038487 320 SGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEV 399 (472)
Q Consensus 320 SG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I 399 (472)
||.=|.++.|..... .+ . ++. .++.+.+ .+...+ -+ | .+
T Consensus 191 Sg~~L~~~~~~~~~~---~~-----~-~~~-----~~~~~~i--------------~~~a~~------gd--d-----~~ 229 (316)
T PRK00292 191 SGPGLVNLYRAICKA---DG-----R-EPE-----LLTPADI--------------TERALA------GS--C-----PL 229 (316)
T ss_pred cHHhHHHHHHHHHhh---cC-----C-Ccc-----cCCHHHH--------------HHHHHh------CC--C-----hH
Confidence 999886655432110 00 0 000 0111111 111111 00 0 34
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceee
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYE 440 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~ 440 (472)
|..+.++++++.|.+|+.++...+. +. .|-+-|++-.
T Consensus 230 A~~~~~~~~~~lg~~i~~l~~~~~P---~~-~vvi~Gg~~~ 266 (316)
T PRK00292 230 CRRTLSLFCVILGRVAGNLALTLGA---RG-GVYIAGGIVP 266 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---Cc-eEEEeCchHH
Confidence 6678899999999999999987764 21 2445666653
No 22
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.74 E-value=0.00096 Score=66.32 Aligned_cols=245 Identities=20% Similarity=0.214 Sum_probs=130.0
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccce-eEE
Q 038487 100 YGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLG-YTW 178 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG-fTF 178 (472)
|.||-|||..|++++...|+ +..+ ...-|........++...-|.+-+.+.+++.+... ..+. ++|
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP-------DDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST-------TCCCEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc-------cccceeee
Confidence 67999999999999987553 2322 22234333323345666777777788777644211 1111 111
Q ss_pred eeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCCCCceEEEEeCCccce
Q 038487 179 SHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYNRDCVAAVTLGTGTNA 258 (472)
Q Consensus 179 SFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~~~~~iGlIlGTGtNa 258 (472)
.. =|+...+...+-..+++++ -+.+.||++..+.++.- ..-|-+|-|||+++
T Consensus 68 g~---------------aG~~~~~~~~~~~~~~~~~----------~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 68 GA---------------AGYGRAGDEQEFQEEIVRS----------EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EE---------------EEEEETTTTTHHHHHHHHH----------EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eE---------------eeecCcccccchhhcceEE----------EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 11 1222222221122222222 34589999887777644 36688999999999
Q ss_pred eeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHHHHHHHhc
Q 038487 259 AYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRVLLRMAKE 338 (472)
Q Consensus 259 cY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRlil~~~~~~ 338 (472)
..+.+ ++++.-.--||.+-. |.- ||.+ |.|..|....++
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~~g------------D~G-------------Sg~~---ig~~~L~~~~~~ 158 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHCLG------------DEG-------------SGYW---IGRRALRAVLRE 158 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTTTT------------TTT-------------SHHH---HHHHHHHHHHHH
T ss_pred EEEEc-------------CCcEEEeCCCCCCcC------------CCC-------------cHHH---HHHHHHhHHHHH
Confidence 99763 345665566776521 211 2233 333444444332
Q ss_pred cCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHHHHHhhHHHHHHH
Q 038487 339 ADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAV---VEVCDIVTERAARLAAAGI 415 (472)
Q Consensus 339 ~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~v---r~I~~~V~~RaA~L~Aa~i 415 (472)
-. +..++....+ ......++. ....+.+.. -.++..|..+++...+-.+
T Consensus 159 ~d---~~~~~~~~~~-~~~~~~~A~------------------------fa~~v~~~a~~gd~~a~~Il~~a~~~la~~i 210 (271)
T PF01869_consen 159 LD---GRAEPTPYAK-PASNARIAV------------------------FAPTVFEAAQQGDEVARDILAEAADELAELI 210 (271)
T ss_dssp HT---TSSTTSHHHH-TT-HHHHHC------------------------THHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hc---CccccCcccC-CCChhheeh------------------------hhHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 11 1111111000 001111111 111111111 1456678899999999999
Q ss_pred HHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhC
Q 038487 416 VGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLG 458 (472)
Q Consensus 416 aail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~ 458 (472)
.+++++..... ..|.+-||++++.+ |.+.+++.|++-++
T Consensus 211 ~~~~~~~~~~~---~~v~l~GGv~~~~~-~~~~l~~~l~~~~~ 249 (271)
T PF01869_consen 211 KAVLKRLGPEK---EPVVLSGGVFKNSP-LVKALRDALKEKLP 249 (271)
T ss_dssp HHHHHTCTCCC---CSEEEESGGGGCHH-HHHHHGGGS-HHHH
T ss_pred HHHHHhcCCCC---CeEEEECCccCchH-HHHHHHHHHHHhcC
Confidence 99998876532 12999999998855 55556666666554
No 23
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=97.46 E-value=0.012 Score=59.94 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=95.2
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEe
Q 038487 100 YGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWS 179 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (472)
|++|+||||.|+++|.-.+. +.... +. +. + +.|+-+.+.|.+|+++..... .....-.|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~~-~~---~~---~----~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQA-KT---YS---G----LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceeee-EE---Ee---c----CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999975432 12111 11 11 0 114555666666666532110 011123677777
Q ss_pred eeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc--------ccC----CCCc
Q 038487 180 HSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG--------RFY----NRDC 246 (472)
Q Consensus 180 FP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~--------~y~----~~~~ 246 (472)
-|++. +.+..- -.|. .++. .|++. +.+..+.|.||.-+.-++- .+. ..+.
T Consensus 64 Gpv~~-----~~v~~~nl~w~------~~~~-~l~~~-----~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITG-----DWVAMTNHTWA------FSIA-ELKQN-----LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccC-----CEEEecCCCCe------eCHH-HHHHh-----cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 77642 222211 1121 2332 34432 3444467999999888874 222 2345
Q ss_pred eEEEEe--CCccceeeecccCCCCCCCCCCCCCCcE-EEeeccCCCCCCCCCCCccchh----hhccCCCCCcceeeeec
Q 038487 247 VAAVTL--GTGTNAAYVESSQAVPKWQGPSPKSGEI-VISTEWGNFSSSSFPVTEFDAS----LDAESLNPGSMIFEKLV 319 (472)
Q Consensus 247 ~iGlIl--GTGtNacY~e~~~~i~k~~~~~~~~~~m-iINtEwG~fg~~~lp~T~~D~~----lD~~S~nPg~q~~EKmi 319 (472)
.+.+++ |||...+.+.+.. ++++ ..-.|+|... .-|.+.-+.. +.... +.-.+|...
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~-----------~g~l~~~agE~GH~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~ 190 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV-----------DGRWVVLPGEGGHVD--FAPNSELEAIILEYLRAKI---GHVSAERVL 190 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC-----------CCCEEECCCCccccc--CCCCCHHHHHHHHHHHHhc---CCceeeeee
Confidence 678999 6666666554210 1222 3345666441 1122321111 11222 345799999
Q ss_pred cccchHHHHHHH
Q 038487 320 SGMYLGEIVRRV 331 (472)
Q Consensus 320 SG~YLGEivRli 331 (472)
||.-|..+.|..
T Consensus 191 Sg~gl~~~~~~~ 202 (316)
T TIGR00749 191 SGPGLVNIYEAL 202 (316)
T ss_pred cHHHHHHHHHHH
Confidence 999999888865
No 24
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.11 Score=52.26 Aligned_cols=282 Identities=15% Similarity=0.160 Sum_probs=139.3
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCCCccceee-eeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccc-ccc
Q 038487 96 KGLYYGINLRATDFLILCARLGGKNEPISDL-HREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAK-EKK 173 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~-~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~-~l~ 173 (472)
.|-|..+|=|+|.-|+..|.=.+........ -..-|.||. +-+|+.|++.+.+.....+..+.. -..
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~lr~ 70 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGPLRS 70 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCccce
Confidence 4678899999999999988743321110000 011244442 234555555544432111110111 123
Q ss_pred ceeEEeeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCC-ceEEEEEecchhhhhccccCCCCceEEEEe
Q 038487 174 LGYTWSHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLN-MRVYALVDDTIGSLAGGRFYNRDCVAAVTL 252 (472)
Q Consensus 174 lGfTFSFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~-v~v~aivNDTVaTlla~~y~~~~~~iGlIl 252 (472)
||.-|| ++.-.|-++-|.+-|+.+-.. .+=..|.||++++|.|+ +....-=|-||-
T Consensus 71 lgL~lS----------------------g~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiVLia 127 (336)
T KOG1794|consen 71 LGLGLS----------------------GTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIVLIA 127 (336)
T ss_pred eeeecc----------------------cCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEEEEe
Confidence 444333 455566666666666544332 35468999999999986 554455678999
Q ss_pred CCccceeeecccCCCCCCCCCCCCCCcEEEeeccC-CCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHHHHHH
Q 038487 253 GTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWG-NFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEIVRRV 331 (472)
Q Consensus 253 GTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG-~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEivRli 331 (472)
|||+||=-..+-....+..+ .+.|+= .|| +|+ +-+|-+-.-+|.+- +-+.|+ --...+...+
T Consensus 128 GTgs~crl~~~DGs~~~~gg----wg~~iG--d~GSayw---ia~~Avq~vfda~d-g~e~~~-------~~i~~v~~ti 190 (336)
T KOG1794|consen 128 GTGSNCRLVNPDGSEKGAGG----WGHMIG--DGGSAYW---IARQAVQMVFDAED-GFENMM-------DKIKDVKQTI 190 (336)
T ss_pred cCCceeEEECCCCCccCCCC----CCCccC--CCcchhh---hhhhhhhheeehhc-Cccccc-------chHHHHHHHH
Confidence 99999765554333222221 223331 122 222 33443333333321 111221 1122222333
Q ss_pred HHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHH
Q 038487 332 LLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVVEVCDIVTERAARLA 411 (472)
Q Consensus 332 l~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~ 411 (472)
+.++. +++++ ..+....++ .+.........+ + .+..++=-.+.+-|.++|+--.
T Consensus 191 f~~~~---------l~d~l--------~ml~~~Ys~--f~k~riA~f~~k-l------a~~ae~Gd~~~~~ifr~Ag~~L 244 (336)
T KOG1794|consen 191 FKHFN---------LRDRL--------QMLEHLYSD--FDKHRIALFTEK-L------AEHAEIGDPLSAEIFRNAGETL 244 (336)
T ss_pred HHHcC---------CCCHH--------HHHHHHHhc--chHHHHHHHHHH-H------HhhhhccCHHHHHHHHHHHHHH
Confidence 33221 12111 011111111 112222222111 1 0111111356677889999999
Q ss_pred HHHHHHHHHHhcccCc--cceEEEEecceeeecHhHHHHHHHHHH
Q 038487 412 AAGIVGIIKKLGRIEL--KKSVVNVEGGLYEHYRIFRNYLHSSVW 454 (472)
Q Consensus 412 Aa~iaail~~~~~~~~--~~~~V~vdGS~~~~~p~y~~~l~~~l~ 454 (472)
|-.+.||+..++.... ...-|-..|++|.-+....+-....++
T Consensus 245 g~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls 289 (336)
T KOG1794|consen 245 GRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLS 289 (336)
T ss_pred HHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhh
Confidence 9999999998876432 356789999999876555444444433
No 25
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.89 E-value=0.0051 Score=51.30 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=30.1
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHH
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAK 155 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~ 155 (472)
.+|+||+|||+.+++++.-.|. +... +.+|.. .+.+++++.+.+.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~----~~~~~~---~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADP----LEVIPR---TNKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecC----EEEEEe---cCcchHHHHHHHHHHH
Confidence 4899999999999999865432 2221 112211 1345677777776655
No 26
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.50 E-value=0.006 Score=62.63 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=102.5
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEEe
Q 038487 100 YGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTWS 179 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFS 179 (472)
|+-|+||||-|+++++..+...... ..+.|+ +.+...|.+.+.+.+.+. . ....-|-.-+|+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~--~~~~~~------~~~~~s~~~~l~~~l~~~----~------~~~~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLI--DIRRYP------SADFPSFEDALADYLAEL----D------AGGPEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEE--EEEEEE------GCCCCHHHHHHHHHHHHT----C------HHHTCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcCCCCcccc--ccEEEe------cCCcCCHHHHHHHHHHhc----c------cCCCccceEEEE
Confidence 6789999999999999966531112 111232 223344555555554432 1 011234556777
Q ss_pred ee--eecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccC-------------CC
Q 038487 180 HS--VDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFY-------------NR 244 (472)
Q Consensus 180 FP--~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~-------------~~ 244 (472)
.+ +.. ++.++..|+ |.++ .+.|.++ +.++-+.+|||=.|.-.+.-.. ++
T Consensus 63 vAGPV~~---~~~~lTN~~-W~i~-----------~~~l~~~-lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~ 126 (316)
T PF02685_consen 63 VAGPVRD---GKVRLTNLP-WTID-----------ADELAQR-LGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDP 126 (316)
T ss_dssp ESS-EET---TCEE-SSSC-CEEE-----------HHHCHCC-CT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESST
T ss_pred EecCccC---CEEEecCCC-cccc-----------HHHHHHH-hCCceEEEEcccchheeccCCCCHHHeeeccCCCCCC
Confidence 65 542 455565552 3443 2455443 3343557999987765443221 12
Q ss_pred CceEEEE-eCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhc-cCCCCCcceeeeecccc
Q 038487 245 DCVAAVT-LGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDA-ESLNPGSMIFEKLVSGM 322 (472)
Q Consensus 245 ~~~iGlI-lGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~-~S~nPg~q~~EKmiSG~ 322 (472)
...+.+| .|||.+.|++.+. ..+..++-+|.|.-+ .-|+++.+.++=+ -...-+.=.+|..+||+
T Consensus 127 ~~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~ 193 (316)
T PF02685_consen 127 GGPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSGR 193 (316)
T ss_dssp TS-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSHH
T ss_pred CCcEEEEEcCCCcEEEEEEec-----------CCceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecchh
Confidence 3333333 6999999999863 234579999999763 3577876655421 11111455789999998
Q ss_pred chHHHHHH
Q 038487 323 YLGEIVRR 330 (472)
Q Consensus 323 YLGEivRl 330 (472)
=|..|.+-
T Consensus 194 GL~~ly~~ 201 (316)
T PF02685_consen 194 GLENLYRF 201 (316)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88776654
No 27
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.02 E-value=2.1 Score=43.62 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=143.8
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeE
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYT 177 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfT 177 (472)
-||.||=|||..|..+-..++ ++.-+ -..=|..+.+...++=+.-|.+-|.+.+++.+.. |-.+-
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g---~vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~---------~~~i~ 70 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDG---NVLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLK---------PDEIA 70 (301)
T ss_pred EEEEEccCCcceEEEEEcCCC---cEEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCC---------HHHhC
Confidence 589999999999998877543 23322 2234666666666788889999999998776532 22233
Q ss_pred EeeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCce-EEEEEecchhhhhccccCCCCceEEEEeCCcc
Q 038487 178 WSHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMR-VYALVDDTIGSLAGGRFYNRDCVAAVTLGTGT 256 (472)
Q Consensus 178 FSFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~-v~aivNDTVaTlla~~y~~~~~~iGlIlGTGt 256 (472)
++++-- +..|.+.....+ .+ .+.+++- -+-|.||....|.++-..+.-+ =+|+|||+
T Consensus 71 ~~~agl------------------a~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTGS 128 (301)
T COG2971 71 AIVAGL------------------ALAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDGI--IVIAGTGS 128 (301)
T ss_pred ceeeee------------------eccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCCE--EEEecCCe
Confidence 333322 224444433322 22 3445543 5569999999999875544332 36788884
Q ss_pred ceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCcceeeeeccccchHHH-HHHHHHHH
Q 038487 257 NAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGSMIFEKLVSGMYLGEI-VRRVLLRM 335 (472)
Q Consensus 257 NacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~q~~EKmiSG~YLGEi-vRlil~~~ 335 (472)
+|+-. ..++...-=-||.+ + -|+ -||.|||.- ++.+|+.
T Consensus 129 --i~~~~------------~gg~~~r~GG~Gf~------I------gDe-------------gSga~ig~~~L~~~lra- 168 (301)
T COG2971 129 --IGYGR------------KGGRRERVGGWGFP------I------GDE-------------GSGAWIGREALQEALRA- 168 (301)
T ss_pred --EEEEE------------eCCeeEEecCcCcc------c------ccc-------------chHHHHHHHHHHHHHHH-
Confidence 44433 12334444456654 1 122 368888843 3333332
Q ss_pred HhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHHHH
Q 038487 336 AKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGITDSTPKAREAVV-----------EVCDIVT 404 (472)
Q Consensus 336 ~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~vr-----------~I~~~V~ 404 (472)
|.+..+ .-.|..+.+..+-. |.+.+..+..+. .++..+...+- .++..|.
T Consensus 169 ------~DG~~~-----~t~L~d~v~~~f~~----d~edlv~~~y~a----~~~~~~ia~lap~V~~~A~~GD~~A~~Il 229 (301)
T COG2971 169 ------FDGRRE-----ATPLTDAVMAEFNL----DPEDLVAFIYKA----GPGDKKIAALAPAVFEAARKGDPVAIRIL 229 (301)
T ss_pred ------hcCCcc-----CChHHHHHHHHhCC----CHHHHHHHHHhc----CCchHHHHHhhHHHHHHHHcCCHHHHHHH
Confidence 222222 12244555554432 344444444431 12222221111 2344567
Q ss_pred HHhhHHHHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHH
Q 038487 405 ERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSV 453 (472)
Q Consensus 405 ~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l 453 (472)
+.||..+++.+-++..+. ....+-+-|++++.+|.|.+.+++.+
T Consensus 230 ~~aa~~i~~~~~~l~~~~-----g~~~l~l~GG~~~~~~~~~~~~~~~l 273 (301)
T COG2971 230 KEAAAYIATLLEALSIFN-----GSEKLSLLGGLAPSYPYYLSLFRRAL 273 (301)
T ss_pred HHHHHHHHHHHHHHhccc-----CCceEEEeccccccchhhHHHHHHHh
Confidence 777766665555553222 23568899999999999999988765
No 28
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.21 E-value=0.085 Score=51.46 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=42.2
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--C-CcccccChhHHHHHHHHHHHHHHhcC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISI--P-SDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
||+||+|.||.|++++.-.| +++...+..++. | +.....+.+++++.+.+++.+.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d~~g---~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG---KIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS---CEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCC---CEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999433 244433333332 2 22335578999999999999999876
No 29
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.41 E-value=0.46 Score=52.21 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=43.2
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--C-CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISI--P-SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
+|+||+|+|+.|++++...|+ ++...+..++. | +.....+.+++++-+.+++.+.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999986543 34333333332 2 223455778999999999999998754
No 30
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.09 E-value=0.69 Score=50.50 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=43.5
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccC-----CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIP-----SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip-----~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
-+|+||+|.|+.|++++...|+ ++...+..|+.+ +.....+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999987653 343333344321 233345678999999999999987643
No 31
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=90.53 E-value=0.67 Score=50.39 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeec--cC-CcccccChhHHHHHHHHHHHHHHhcC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEIS--IP-SDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~--Ip-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
+|+||+|+|+.|++++...| +++...+.+|+ .| +.....+.+++++-+.+++.+.+++.
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENG---KIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred EEEEeccccceEEEEEcCCC---CEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999998644 34444433333 22 22334567889999999999998764
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=90.29 E-value=0.63 Score=50.43 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=41.9
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--CC-cccccChhHHHHHHHHHHHHHHhcCC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISI--PS-DVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p~-~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
+|+||+|+|+.|++++...|+ ++...+..++. |. .....+.+++|+-+.+++.+.+++.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999986543 33333333332 22 11233678899999999999988754
No 33
>PRK13318 pantothenate kinase; Reviewed
Probab=89.91 E-value=4.5 Score=40.04 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=46.1
Q ss_pred hhhhccccCCCCceEEEEeCCccceeeecccCCCCCCCCC-CCCCCcEEEeeccCCCCCCCCCCCccchhhhccCCCCCc
Q 038487 234 GSLAGGRFYNRDCVAAVTLGTGTNAAYVESSQAVPKWQGP-SPKSGEIVISTEWGNFSSSSFPVTEFDASLDAESLNPGS 312 (472)
Q Consensus 234 aTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~-~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPg~ 312 (472)
+.+++++...+...+-+-+||++-..++.+-.. +.|. .-+.-.+-.|+=... ...||..+.+. ....||.
T Consensus 113 a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~---~~GG~I~PG~~l~~~aL~~~--ta~Lp~~~~~~----~~~~~g~ 183 (258)
T PRK13318 113 VNAVAAYELYGGPLIVVDFGTATTFDVVSAKGE---YLGGVIAPGINISADALFQR--AAKLPRVEITK----PDSVIGK 183 (258)
T ss_pred HHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCc---EEEEEECccHHHHHHHHHhh--hhcCCCCcCCC----CCccCCC
Confidence 444444433445678888999999888854221 1110 000001111111110 01355443222 2344788
Q ss_pred ceeeeeccccchHHH--HHHHHHHHHh
Q 038487 313 MIFEKLVSGMYLGEI--VRRVLLRMAK 337 (472)
Q Consensus 313 q~~EKmiSG~YLGEi--vRlil~~~~~ 337 (472)
..-|-|-||.|.|-+ +..++.++.+
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~ 210 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKE 210 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999776643 3334444443
No 34
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=89.62 E-value=1.1 Score=49.26 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=44.7
Q ss_pred EEEEEeCCCeeEEEEEE-eCCCCccceeeeeeeec-------cC-------CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 99 YYGINLRATDFLILCAR-LGGKNEPISDLHREEIS-------IP-------SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~-L~g~~~~~~~~~~~~~~-------Ip-------~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
+|+||+|.|+.|++++. ..|+ ++...+..|+ .| +.....+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999 7664 3333333444 23 345566789999999999999988753
No 35
>PRK00047 glpK glycerol kinase; Provisional
Probab=89.50 E-value=0.76 Score=49.89 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=42.7
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeec--cCC-cccccChhHHHHHHHHHHHHHHhcCC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEIS--IPS-DVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~--Ip~-~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
-+|+||+|+|+.|++++...|+ ++...+.+|+ .|. .....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999987553 3333333443 232 12234678999999999999987644
No 36
>PRK15027 xylulokinase; Provisional
Probab=89.16 E-value=0.96 Score=48.91 Aligned_cols=60 Identities=13% Similarity=0.281 Sum_probs=44.4
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--C-CcccccChhHHHHHHHHHHHHHHhcC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISI--P-SDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
.||+||+|.|+.|++++...| +++...+..|++ | +.....+.+++++.+.+++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G---~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQG---EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCC---CEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 389999999999999998654 345444445543 2 23345567899999999999998764
No 37
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=88.22 E-value=0.99 Score=48.41 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=42.0
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc---CCcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 100 YGINLRATDFLILCARLGGKNEPISDLHREEISI---PSDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I---p~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
|+||+|.|++|++++.+.|+ ++...+..++. ++.....+.+++++-+.+++.+++++.+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~ 62 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQAS 62 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999998653 34333333331 1222345678899999999999998765
No 38
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=87.96 E-value=1.3 Score=48.06 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=43.2
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--C-CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISI--P-SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
-+|+||+|.|+.|++++...| .++...+..+++ | +.....+.+++|+-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G---~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKG---NVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCC---CEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 378999999999999998755 334333334432 2 233345678899999999999987643
No 39
>PRK10331 L-fuculokinase; Provisional
Probab=87.47 E-value=1.8 Score=46.60 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=42.2
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeec--c--C-CcccccChhHHHHHHHHHHHHHHhcC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEIS--I--P-SDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~--I--p-~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
-+|+||+|.|+.|++++...|+ ++...+..++ + | +.....+.+++++-+.+++.+.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999987653 3433333332 1 1 12334567889999999999998753
No 40
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=87.44 E-value=1.1 Score=48.89 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=44.6
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccC---CcccccChhHHHHHHHHHHHHHHhcC
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIP---SDVMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip---~~~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
-||+||+|.|+.|+.++..++ ..++......+.+. +.....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999975 23343333333322 22345678999999999999998875
No 41
>PLN02295 glycerol kinase
Probab=86.74 E-value=1.8 Score=47.26 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=43.7
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeec--cC-CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEIS--IP-SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~--Ip-~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
+|+||+|.|+.|++++...|+ ++...+..|+ .| +.....+.+++|+-+.++|.+.+++..
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999986553 3433333443 23 234456789999999999999988754
No 42
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=85.73 E-value=2.4 Score=45.65 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=41.7
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeec----cC-CcccccChhHHHHHHHHHHHHHHhc
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEIS----IP-SDVMCCTSQELFDYIAGEFAKFVNA 159 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~----Ip-~~~~~~~~~~lFd~IA~~i~~fl~~ 159 (472)
+|+||+|.|+.|++++...|+ ++.+.+.+++ .| +.....+.+++|+-+.+++.+.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999997553 3433333333 12 2333457789999999999999864
No 43
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=84.52 E-value=17 Score=37.26 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=106.5
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeE
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYT 177 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfT 177 (472)
-.|+=|+||||-|+++|.....+. . +.+.|+ ..+ |.-+-+-|.+|+.++.. ......-|.
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~~~--~--~~~~~~------~~d----ypsle~av~~yl~~~~~------~~~~~a~~A 66 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPAEP--L--QAETYA------CAD----YPSLEEAVQDYLSEHTA------VAPRSACFA 66 (320)
T ss_pred ceEEEecCCcceEEEEeccCCCCc--c--ccceec------ccC----cCCHHHHHHHHHHHhhc------cCccceEEE
Confidence 467779999999999999854321 1 101121 111 23344455555555411 111222222
Q ss_pred EeeeeecccCCCcEEeee--cccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCC------------
Q 038487 178 WSHSVDQVTTLSPSAIKW--KNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYN------------ 243 (472)
Q Consensus 178 FSFP~~Qt~l~~g~Li~w--KgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~------------ 243 (472)
--=|+. .. -+++ -.|.++. +.+ |+.+.++=+.|+||-+|.=++-....
T Consensus 67 iAgPv~-----gd-~v~lTN~~W~~s~-----------~~~-r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~ 128 (320)
T COG0837 67 IAGPID-----GD-EVRLTNHDWVFSI-----------ARM-RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKP 128 (320)
T ss_pred EecCcc-----CC-EEeeecCcccccH-----------HHH-HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCC
Confidence 222332 22 2333 4555552 333 33455555679999999887766652
Q ss_pred -CCceEEEE-eCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhcc-CCCCCcceeeeecc
Q 038487 244 -RDCVAAVT-LGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAE-SLNPGSMIFEKLVS 320 (472)
Q Consensus 244 -~~~~iGlI-lGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~-S~nPg~q~~EKmiS 320 (472)
++..+++| =|||--.|++.+.. .+-..+-+|=|-- +.-|+|+-|..+-+. ..+-|.-.-|..+|
T Consensus 129 ~~~a~~avlGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~LS 195 (320)
T COG0837 129 EPNAPRAVLGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVLS 195 (320)
T ss_pred CCCCceEEEcCCCCcceEEEEecC-----------CeeEeccCCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhcc
Confidence 23333332 36777788887532 2357788888865 356899988887543 33456777899999
Q ss_pred ccchHHHHHHHHH
Q 038487 321 GMYLGEIVRRVLL 333 (472)
Q Consensus 321 G~YLGEivRlil~ 333 (472)
|+=|=-|.|-+-.
T Consensus 196 G~GL~~iY~al~~ 208 (320)
T COG0837 196 GPGLVNLYRALCA 208 (320)
T ss_pred cccHHHHHHHHHH
Confidence 9998777775443
No 44
>PRK04123 ribulokinase; Provisional
Probab=82.74 E-value=4.1 Score=44.78 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=41.3
Q ss_pred cEEEEEeCCCeeEEEEEEe-CCCCccceeeeeeeecc--------C-CcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 98 LYYGINLRATDFLILCARL-GGKNEPISDLHREEISI--------P-SDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L-~g~~~~~~~~~~~~~~I--------p-~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
.||+||+|.|+.|++++.. +|+ ++...+..|+. | +.....+.+++++-+.++|.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999995 553 33333333431 2 122344567889999999999886543
No 45
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=81.14 E-value=3.4 Score=44.25 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=38.6
Q ss_pred EEEEeCCCeeEEEEEEeCCCCccce-eeeeeeecc--CCc-ccccChhHHHHHHHHHHHHHHh
Q 038487 100 YGINLRATDFLILCARLGGKNEPIS-DLHREEISI--PSD-VMCCTSQELFDYIAGEFAKFVN 158 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g~~~~~~-~~~~~~~~I--p~~-~~~~~~~~lFd~IA~~i~~fl~ 158 (472)
||||+|.|+.|++++...+...++. ...++.++. |.. ...-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999975423333 222222221 111 1234567899999999999865
No 46
>PRK13321 pantothenate kinase; Reviewed
Probab=80.09 E-value=3.5 Score=40.85 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHH
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFA 154 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~ 154 (472)
+|+||+|||++|+++++ ++ ++.. .+.+|-... .+.+++++.+.+.+.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~----~~~~~T~~~-~~~~~~~~~l~~l~~ 48 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLR----SFRLPTDKS-RTSDELGILLLSLFR 48 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEE----EEEEecCCC-CCHHHHHHHHHHHHH
Confidence 68999999999999987 32 2222 234443221 233556655555443
No 47
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=73.33 E-value=83 Score=32.66 Aligned_cols=129 Identities=12% Similarity=0.162 Sum_probs=71.4
Q ss_pred EEEEEeCCCeeEEEEEEeCCCC-ccceeeeeeeeccCC-cccccChhHHHHHHHHHHHHHHhc----CCCCCCCCccccc
Q 038487 99 YYGINLRATDFLILCARLGGKN-EPISDLHREEISIPS-DVMCCTSQELFDYIAGEFAKFVNA----HPDNGNDTSAKEK 172 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~-~~~~~~~~~~~~Ip~-~~~~~~~~~lFd~IA~~i~~fl~~----~~~~~~~~~~~~l 172 (472)
+++||+|-+++|++..+..+++ ..+.... ..|. .+..|.-.+ .+-+++.|.+.+++ .+.. -+..
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~----~~~~~gi~~G~I~d-~~~~~~~i~~al~~~e~~~~~~-----i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVG----THPSRGIKKGVIND-IEAAVGSIQRAIEAAELMAGCE-----IRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEc-HHHHHHHHHHHHHHHHHHhCCc-----ccEE
Confidence 6899999999999999886543 3333221 2342 333443222 34456666666654 2211 1122
Q ss_pred ccee------------EEeee---ee-------------cccCCCcEEeee--cccccCCC-------------------
Q 038487 173 KLGY------------TWSHS---VD-------------QVTTLSPSAIKW--KNFAANDT------------------- 203 (472)
Q Consensus 173 ~lGf------------TFSFP---~~-------------Qt~l~~g~Li~w--KgF~~~~v------------------- 203 (472)
-+++ +.++| +. +.--.+-.++++ .+|.+.+.
T Consensus 72 ~~~v~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~ 151 (371)
T TIGR01174 72 IVSISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVH 151 (371)
T ss_pred EEEEcccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEE
Confidence 2332 33444 11 111133456666 78865441
Q ss_pred ---CCchHHHHHHHHHHhcCCCceEEEEEecchhhhhcc
Q 038487 204 ---VEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGG 239 (472)
Q Consensus 204 ---~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~ 239 (472)
.-++.+.-+.++++.-|++ +..++++.+|...+.
T Consensus 152 lva~~~~~v~~~~~~~~~aGl~--~~~i~~~~~A~a~a~ 188 (371)
T TIGR01174 152 IITGSSTILRNLVKCVERCGLE--VDNIVLSGLASAIAV 188 (371)
T ss_pred EEEEEHHHHHHHHHHHHHcCCC--eeeEEEhhhhhhhhh
Confidence 2355667777777766654 566788988887754
No 48
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=72.28 E-value=27 Score=35.75 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=59.4
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccc-cChhHHHHHHHHHHHHHHhcCCCCCCCCcccccccee
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMC-CTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGY 176 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~-~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (472)
.+++||+|.+++|++.++-.+++..+. .....++|.+... |.-.+ .+-+++.|.+.+++.+.. . --.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~-----~----k~v 71 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGIN-----T----KKA 71 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCC-----c----ceE
Confidence 589999999999999888655443333 3335577766543 22111 245667777777665421 1 134
Q ss_pred EEeeeeecccCCCcEEeeecccccCC-CCCchHHHHHHHHHHhc
Q 038487 177 TWSHSVDQVTTLSPSAIKWKNFAAND-TVEETLVTNINQALAKH 219 (472)
Q Consensus 177 TFSFP~~Qt~l~~g~Li~wKgF~~~~-v~G~dv~~lL~~al~r~ 219 (472)
.+++|-.+ .++ |-+.++. +-.+++.+.+.-..+++
T Consensus 72 ~~alp~~~------~~~--r~~~~p~~i~~~el~~~i~~e~~~~ 107 (348)
T TIGR01175 72 ATAVPGSA------VIT--KVIPVPAGLDERELEFAVYIEASHY 107 (348)
T ss_pred EEEecCCe------eEE--EEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 66666653 122 3334454 56677777776555543
No 49
>PRK13410 molecular chaperone DnaK; Provisional
Probab=70.51 E-value=10 Score=43.01 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.0
Q ss_pred ccEEEEEeCCCeeEEEEEE
Q 038487 97 GLYYGINLRATDFLILCAR 115 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~ 115 (472)
|..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 4689999999999999886
No 50
>CHL00094 dnaK heat shock protein 70
Probab=66.12 E-value=13 Score=41.81 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.3
Q ss_pred cEEEEEeCCCeeEEEEEE
Q 038487 98 LYYGINLRATDFLILCAR 115 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~ 115 (472)
.+++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999885
No 51
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=64.61 E-value=22 Score=40.35 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.3
Q ss_pred cccEEEEEeCCCeeEEEEEE
Q 038487 96 KGLYYGINLRATDFLILCAR 115 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~ 115 (472)
.+.+++||||.||..|+.++
T Consensus 26 ~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred cceEEEEEeCcCeEEEEEEe
Confidence 35799999999999999875
No 52
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=62.60 E-value=2e+02 Score=30.02 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHh
Q 038487 400 CDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEML 457 (472)
Q Consensus 400 ~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~ 457 (472)
|..+...-++.+|-+|++++..++.+ +=.|.+.|++-+. +.+++.+.+.++.+.
T Consensus 268 A~~a~d~~~~~la~~Ia~l~~~l~g~---pD~IV~gGGI~e~-~~l~~~I~~~l~~~a 321 (351)
T TIGR02707 268 AKLILDAMAYQIAKEIGKMAVVLKGK---VDAIVLTGGLAYS-KYFVSEIIKRVSFIA 321 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEcchhhcC-HHHHHHHHHHHHhhC
Confidence 34455556666677777777777432 1247788888765 678899999988764
No 53
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=60.70 E-value=21 Score=40.49 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.7
Q ss_pred ccEEEEEeCCCeeEEEEEE
Q 038487 97 GLYYGINLRATDFLILCAR 115 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~ 115 (472)
|..++||||.||..|+.++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 3589999999999999875
No 54
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=59.50 E-value=14 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.7
Q ss_pred ccEEEEEeCCCeeEEEEEE
Q 038487 97 GLYYGINLRATDFLILCAR 115 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~ 115 (472)
...++||||.||-.|+.++
T Consensus 19 ~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CeEEEEEeccccEEEEEEE
Confidence 3589999999999999874
No 55
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=59.19 E-value=28 Score=34.65 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=94.6
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCcccccc-ceeE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKK-LGYT 177 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~-lGfT 177 (472)
-+|||.|||=-+|..-....+ .-.|.+-+ +.+-+++.+|++.-|.+..+...... .-+. =|=.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~sn--------rl~F~t~e---T~kId~~ve~l~~li~~h~k~C~~~~-----~liatGGga 83 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQSN--------RLTFKTEE---TKKIDQVVEWLNNLIQQHEKLCLTKI-----TLIATGGGA 83 (342)
T ss_pred EEEEecCceeeeeeeCccccc--------ceeeehHh---hhhHHHHHHHHHHHHHHHHhhhhhee-----eEEecCCcc
Confidence 489999999888865111100 01222222 23346777787776655433211000 0000 0111
Q ss_pred EeeeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhc--CCCceEEEEEecchhh----hhccccCCCCceEEE
Q 038487 178 WSHSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKH--DLNMRVYALVDDTIGS----LAGGRFYNRDCVAAV 250 (472)
Q Consensus 178 FSFP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~--~l~v~v~aivNDTVaT----lla~~y~~~~~~iGl 250 (472)
|-| -=++ |.|+++ +...+-.+.|...|+=- ++|-+|- +.||..+- ++...+.+-...+=+
T Consensus 84 ~kf-----------yd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~evF-v~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 84 YKF-----------YDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAEVF-VEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hhh-----------HHHHhhhccce-eeecchHHHHHhcccceeeeccHHHe-eeeccccchhhhhhhhccccccceeeE
Confidence 111 2356 888777 66666666666555432 3454553 77776543 445556555677788
Q ss_pred EeCCccceeeecccCCCCCCCCCCCCCCcEEEeeccCCCCCCCCCCCccchhhhcc
Q 038487 251 TLGTGTNAAYVESSQAVPKWQGPSPKSGEIVISTEWGNFSSSSFPVTEFDASLDAE 306 (472)
Q Consensus 251 IlGTGtNacY~e~~~~i~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~ 306 (472)
=+|+|+-.-|+..-++.....+.. -.+. |=||... ---+.|.||..+|..
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGss-lGGG----tlwGLls-Llt~a~~ydqmld~a 200 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSS-LGGG----TLWGLLS-LLTQATDYDQMLDMA 200 (342)
T ss_pred eccCCeEEEEecCcchhccccccc-cCcc----hHHHHHH-HHcccccHHHHHHHH
Confidence 899999888877655554444321 1222 3477651 113789999998853
No 56
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=56.81 E-value=16 Score=40.99 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=16.3
Q ss_pred cEEEEEeCCCeeEEEEEE
Q 038487 98 LYYGINLRATDFLILCAR 115 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~ 115 (472)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 479999999999999886
No 57
>PLN02669 xylulokinase
Probab=55.44 E-value=34 Score=37.96 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=38.9
Q ss_pred cCCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeecc--CCcc----cccChh----------HHHHHHHHH
Q 038487 89 SLPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISI--PSDV----MCCTSQ----------ELFDYIAGE 152 (472)
Q Consensus 89 ~lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~I--p~~~----~~~~~~----------~lFd~IA~~ 152 (472)
+||.+. -||+||+|.|++|.+++...|+ ++...+..|++ |+.- ...+.+ .+++-+..+
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 356543 4899999999999999986553 33333333331 2110 111222 455888888
Q ss_pred HHHHHh
Q 038487 153 FAKFVN 158 (472)
Q Consensus 153 i~~fl~ 158 (472)
+.+.++
T Consensus 77 l~~l~~ 82 (556)
T PLN02669 77 LQKLAK 82 (556)
T ss_pred HHHHHH
Confidence 888763
No 58
>PRK13324 pantothenate kinase; Reviewed
Probab=55.41 E-value=57 Score=32.60 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=54.8
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccceeEE
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGYTW 178 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTF 178 (472)
.|+||.|=||.++++.+ ++ +.. ..++++..-...+.++++-++.. ++........ -+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~----~~~r~~t~~~~~t~de~~~~l~~----~~~~~~~~~~------~i----- 58 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIV----SQIRYATSSVDSTSDQMGVFLRQ----ALRENSVDLG------KI----- 58 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEE----EEEEEecCccccchHHHHHHHHH----HHHhcCCCcc------CC-----
Confidence 58999999999999887 22 122 13566642223455666655555 4433221100 00
Q ss_pred eeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCCCC
Q 038487 179 SHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYNRD 245 (472)
Q Consensus 179 SFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~~~ 245 (472)
++.-++.|+ -.+...|.+++.+. ++.++.-+-.+. +-+...|.+|+
T Consensus 59 -----------------~~viisSVv-P~l~~~l~~~~~~~-~~~~~~~v~~~~--~~l~~~y~~p~ 104 (258)
T PRK13324 59 -----------------DGCGISSVV-PHLNYSLGSAVIKY-FNIKPFFISMDT--TDLDMSAVEAH 104 (258)
T ss_pred -----------------CeEEEEeCc-chhHHHHHHHHHHH-hCCCeEEEecCC--ccceeecCChh
Confidence 112223444 56667776676665 555554443444 44666676653
No 59
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=55.39 E-value=29 Score=39.31 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=16.5
Q ss_pred ccEEEEEeCCCeeEEEEEE
Q 038487 97 GLYYGINLRATDFLILCAR 115 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~ 115 (472)
+..++||||.||..|+.++
T Consensus 4 ~~~iGIDlGTt~s~va~~~ 22 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWK 22 (653)
T ss_pred ccEEEEEeCcccEEEEEEe
Confidence 3579999999999999875
No 60
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=52.70 E-value=90 Score=31.07 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 038487 91 PNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAK 170 (472)
Q Consensus 91 P~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~ 170 (472)
|.-+..+.+++||+|-|+.|+...+..+. .... .......++.|.-.+ ++-....|..+++.-.... +.
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~----g~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKL----GR 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHh----CC
Confidence 33345678999999999999887665332 1111 111122233332222 5666666777765321000 11
Q ss_pred cccceeEEeeeeecccCCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecchhhhhc
Q 038487 171 EKKLGYTWSHSVDQVTTLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDTIGSLAG 238 (472)
Q Consensus 171 ~l~lGfTFSFP~~Qt~l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla 238 (472)
..+--.+ +.|..++. .+ ...+.+++++-|++ +..++++..|...+
T Consensus 87 ~i~~v~~-~vp~~~~~-------------------~~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~ 131 (267)
T PRK15080 87 ELTHAAT-AIPPGTSE-------------------GD-PRAIINVVESAGLE--VTHVLDEPTAAAAV 131 (267)
T ss_pred CcCeEEE-EeCCCCCc-------------------hh-HHHHHHHHHHcCCc--eEEEechHHHHHHH
Confidence 1221222 55655321 11 12244777777766 45689999987765
No 61
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=52.39 E-value=1.2e+02 Score=33.51 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=57.9
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCCCccceeeeee--eeccC-CcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccc
Q 038487 96 KGLYYGINLRATDFLILCARLGGKNEPISDLHRE--EISIP-SDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEK 172 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~--~~~Ip-~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l 172 (472)
...+++||.|-|.-|+++++-..++ ......+ ...-| +..+..+..+++.-+.+||+...++-... ..-
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e--~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE--LLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc--cceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------ccc
Confidence 3568999999999999999843221 1111111 11122 33456778999999999999887764321 122
Q ss_pred cceeEEeeeeecccCCCcEEeee-cccccCC
Q 038487 173 KLGYTWSHSVDQVTTLSPSAIKW-KNFAAND 202 (472)
Q Consensus 173 ~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~ 202 (472)
..|.|=|==+.| ....+-| |+..-+.
T Consensus 77 ~~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 77 VVGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred ccccEEEEEEec----CCceEEeecCCCCcc
Confidence 344444444443 3366778 7776654
No 62
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=51.68 E-value=56 Score=36.07 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=62.9
Q ss_pred cEEEEEeCCCeeEEEEEEeC-CCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCcccccccee
Q 038487 98 LYYGINLRATDFLILCARLG-GKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLGY 176 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~-g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGf 176 (472)
-+++||+|--.-|++++... |..-.........+.++......++++.+.-+..+|.+.+++.+.. ..--.|+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~------~~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVD------PADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCC------hhHeeEE
Confidence 37899999999999999996 4321111111122344555556778999999999999999987642 2345777
Q ss_pred EEeeeeecccCCCc-EEeee-ccccc
Q 038487 177 TWSHSVDQVTTLSP-SAIKW-KNFAA 200 (472)
Q Consensus 177 TFSFP~~Qt~l~~g-~Li~w-KgF~~ 200 (472)
.|+|-|.---+++. .-+.. ..|.-
T Consensus 78 GvDaTcSlvv~d~~g~pl~v~~~~~~ 103 (544)
T COG1069 78 GVDATCSLVVIDRDGNPLAVLPEFPN 103 (544)
T ss_pred EEcceeeeEEECCCCCeeccCCCCCC
Confidence 77776665544433 44444 44443
No 63
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=51.66 E-value=34 Score=37.22 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=68.4
Q ss_pred ccEEEEEeCCCeeEEEEEEeCCCCccceeeee-eeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCccccccce
Q 038487 97 GLYYGINLRATDFLILCARLGGKNEPISDLHR-EEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSAKEKKLG 175 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~-~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG 175 (472)
.-.+|||-|-|+-|..++.-.|+-..+.+... +-||-| ..+..++.+++.-...++.+.+.+.+.. +.+.--+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~-GWVEhDp~eIw~~~~~~l~~a~~~~~i~----~~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQP-GWVEHDPLEIWASVRSVLKEALAKAGIK----PGEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCC-CccccCHHHHHHHHHHHHHHHHHHcCCC----ccceEEEE
Confidence 45789999999999998876554322222121 234434 3556788999999999999998886532 34456688
Q ss_pred eEEeeeeecccCCCcEEeee-c--ccccCC------CCCchHHHHHHHH
Q 038487 176 YTWSHSVDQVTTLSPSAIKW-K--NFAAND------TVEETLVTNINQA 215 (472)
Q Consensus 176 fTFSFP~~Qt~l~~g~Li~w-K--gF~~~~------v~G~dv~~lL~~a 215 (472)
+|= -+-+.+-| | |=-+.+ --+.++++-|++.
T Consensus 80 ITN---------QRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 80 ITN---------QRETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred eec---------cceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 872 56788889 8 433322 2345566655544
No 64
>PLN03184 chloroplast Hsp70; Provisional
Probab=49.90 E-value=37 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=16.2
Q ss_pred cEEEEEeCCCeeEEEEEE
Q 038487 98 LYYGINLRATDFLILCAR 115 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~ 115 (472)
..++||||.||..|+.++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 479999999999999875
No 65
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.09 E-value=43 Score=34.82 Aligned_cols=127 Identities=10% Similarity=0.088 Sum_probs=84.3
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCC------------
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGN------------ 165 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~------------ 165 (472)
.-+.||+|-+..+++-.+-.|+.++.. +...-++|+..+......=.+-+++.|++.+.+++...+
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe--~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLE--KYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeee--eeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 367899999999987766444444333 334568999888554444478899999999988765432
Q ss_pred ------CC--cccc------ccceeEEeeeeecccCCCcEEeee-cccccCC----CCCchHHHHHHHHHHhcCCCceEE
Q 038487 166 ------DT--SAKE------KKLGYTWSHSVDQVTTLSPSAIKW-KNFAAND----TVEETLVTNINQALAKHDLNMRVY 226 (472)
Q Consensus 166 ------~~--~~~~------l~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~----v~G~dv~~lL~~al~r~~l~v~v~ 226 (472)
++ .++. -..+.-++||++.-++|==+|=.. -+=..-+ .--+++++...+|++.-|+...|+
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 00 0011 246778999999888876555554 3311101 145899999999999999765554
No 66
>PRK13411 molecular chaperone DnaK; Provisional
Probab=44.17 E-value=68 Score=36.34 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6
Q ss_pred ccEEEEEeCCCeeEEEEEE
Q 038487 97 GLYYGINLRATDFLILCAR 115 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~ 115 (472)
+..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 67
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=44.12 E-value=48 Score=32.48 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHH
Q 038487 394 EAVVEVCDIVTERAARLAAAGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSV 453 (472)
Q Consensus 394 ~~vr~I~~~V~~RaA~L~Aa~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l 453 (472)
++++.+++.+..+-++++ .+.+. + -.|.+.|++.+ .|.+.+.+.+.+
T Consensus 181 di~~~~~~~va~~i~~~~--------~~~~~---~-~~Vvl~GGva~-n~~l~~~l~~~l 227 (248)
T TIGR00241 181 DILAGVYESIAERVAEML--------QRLKI---E-APIVFTGGVSK-NKGLVKALEKKL 227 (248)
T ss_pred HHHHHHHHHHHHHHHHHH--------hhcCC---C-CCEEEECcccc-CHHHHHHHHHHh
Confidence 567777777777666532 32221 1 14889999886 577777777766
No 68
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=44.03 E-value=31 Score=38.37 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEEEEeCCCeeEEEEEE
Q 038487 99 YYGINLRATDFLILCAR 115 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~ 115 (472)
.++||||.||..|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999875
No 69
>PRK03657 hypothetical protein; Validated
Probab=40.67 E-value=98 Score=29.06 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=45.3
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCccccccccCccCCCC----cccc-cEEEEEeCCCeeEEEEEEeCCC
Q 038487 48 ECATPVPRLWQ---VANALVSEMQASLASNETTTDLNMLLSYLASLPNG----EEKG-LYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 48 ~~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G----~E~G-~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.++.+.|++ ++..-..+|-+|.....++ ++..--|-+.. |+| ++.| .|++|...+. ...-..++.|+
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~a-Diala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g~ 146 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADA-DISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAGD 146 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCCC
Confidence 45678888877 7778888888887765555 66666666654 664 4556 5899987654 44545555443
No 70
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=38.47 E-value=61 Score=35.57 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeee-eeeeccCC-ccccc----------ChhHHHHHHHHHHHHHH
Q 038487 90 LPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLH-REEISIPS-DVMCC----------TSQELFDYIAGEFAKFV 157 (472)
Q Consensus 90 lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~-~~~~~Ip~-~~~~~----------~~~~lFd~IA~~i~~fl 157 (472)
.|-+.+.--=+|+|+|.|.+|.-+|.|..++ ++.+. ....+||. +.|.. ..+-|---..+.|...+
T Consensus 157 ~pg~~~~~YGvAvDlGTS~i~aqlVDL~sge--vv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~~~i 234 (614)
T COG3894 157 WPGLKNEAYGVAVDLGTSGIRAQLVDLKSGE--VVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAINQLI 234 (614)
T ss_pred ccCccceeeeeEEecccceeeeEEEeccCCc--EEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHHHHH
Confidence 4555544444899999999999999996543 33322 12344552 22210 12333333444454444
Q ss_pred hcCCCCCCCCccccccceeEEeeeeecccCCCcEEeee-cccccCC--CCCchHHHHHHHHHHhc------------CC-
Q 038487 158 NAHPDNGNDTSAKEKKLGYTWSHSVDQVTTLSPSAIKW-KNFAAND--TVEETLVTNINQALAKH------------DL- 221 (472)
Q Consensus 158 ~~~~~~~~~~~~~~l~lGfTFSFP~~Qt~l~~g~Li~w-KgF~~~~--v~G~dv~~lL~~al~r~------------~l- 221 (472)
++...+.. +. .+-++... -|-.+-+ -.|+|.-+++...+.++ |+
T Consensus 235 d~~~~e~~----------------V~----~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~ 294 (614)
T COG3894 235 DKLCEEGE----------------VC----GNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLE 294 (614)
T ss_pred hhhchhcc----------------cc----ccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchh
Confidence 44321110 00 11222333 4444444 36666666665544332 11
Q ss_pred ---CceEE-------EEEecchhhhhccccCCCCceEEEEeCCccceeeecccCC
Q 038487 222 ---NMRVY-------ALVDDTIGSLAGGRFYNRDCVAAVTLGTGTNAAYVESSQA 266 (472)
Q Consensus 222 ---~v~v~-------aivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~ 266 (472)
+-++. -|=-|.+|.+++..+.+ +..|.++..-|||+=-..+...
T Consensus 295 ~n~n~el~vlP~Ia~~VGADAla~il~tg~~~-sdevslvtD~GTNaEivlg~~~ 348 (614)
T COG3894 295 VNRNCELFVLPAIAHEVGADALAMILSTGIHD-SDEVSLVTDYGTNAEIVLGNRD 348 (614)
T ss_pred hcCCCEEEecchhccccchHHHHHHHhccCcc-ccceEEEEeecccceEEeccCC
Confidence 11111 02249999999887766 5779999999999977666543
No 71
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=37.14 E-value=59 Score=35.78 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=21.7
Q ss_pred ccccEEEEEeCCCeeEEEEEEeCCC
Q 038487 95 EKGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 95 E~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
..+.+|.+|+||+++-|.+++...+
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cccceeccccccceEeeeehhcccc
Confidence 4568999999999999999999644
No 72
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=37.11 E-value=80 Score=35.35 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.7
Q ss_pred EEEEeCCCeeEEEEEE
Q 038487 100 YGINLRATDFLILCAR 115 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~ 115 (472)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 6899999999999876
No 73
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.92 E-value=93 Score=28.29 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=43.7
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
..+++|=|+..++|++.+.++...++.....++.+++.- +.+++=+|-.+ ++.|+++++
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq~~-f~kl~~dy~ 61 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQFT-FAKLMEDYK 61 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHHHH-HHHHHHHcC
Confidence 467899999999999999877777777777788888754 34555555444 667777665
No 74
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.76 E-value=3.8e+02 Score=25.81 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=83.3
Q ss_pred cCCCCCcceeeeeccccchHHHHHHHHHHHHhccCCCCCCCCCCcCCCCcCCchhhhhhccCCCcChHHHHHHHHHHhCC
Q 038487 306 ESLNPGSMIFEKLVSGMYLGEIVRRVLLRMAKEADLFGDTVPPKLMMPYLLRPPDMATMHQDTSEDHELVREKLEEVFGI 385 (472)
Q Consensus 306 ~S~nPg~q~~EKmiSG~YLGEivRlil~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~ 385 (472)
-|+.-|.-.||-=.=..|-+|.+|.=+-++.+.-.||++.+-+.|.-||- +..+ .+|-......|.. +++
T Consensus 53 isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~--------~r~r-r~dr~aa~~llar-~~l 122 (223)
T COG4619 53 ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ--------IRNR-RPDRAAALDLLAR-FAL 122 (223)
T ss_pred cCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH--------Hhcc-CCChHHHHHHHHH-cCC
Confidence 46667888888777778999999999999999999999988877777774 3333 3455556666665 776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHhcccCccceEEEEecceeeecHhHHHHHHHHHHHHhCC
Q 038487 386 TDSTPKAREAVVEVCDIVTERAARLAA--AGIVGIIKKLGRIELKKSVVNVEGGLYEHYRIFRNYLHSSVWEMLGN 459 (472)
Q Consensus 386 ~~~~~~d~~~vr~I~~~V~~RaA~L~A--a~iaail~~~~~~~~~~~~V~vdGS~~~~~p~y~~~l~~~l~~l~~~ 459 (472)
++ ..+.+|+..|++ .-.+|+++.+.-.+ -..-.|-++-...+.=++.+++-+..++.+
T Consensus 123 ~~-------------~~L~k~it~lSGGE~QriAliR~Lq~~P---~ILLLDE~TsALD~~nkr~ie~mi~~~v~~ 182 (223)
T COG4619 123 PD-------------SILTKNITELSGGEKQRIALIRNLQFMP---KILLLDEITSALDESNKRNIEEMIHRYVRE 182 (223)
T ss_pred ch-------------hhhcchhhhccchHHHHHHHHHHhhcCC---ceEEecCchhhcChhhHHHHHHHHHHHhhh
Confidence 52 245566666665 34556666443322 123444444444455666666666666643
No 75
>PRK13411 molecular chaperone DnaK; Provisional
Probab=35.12 E-value=69 Score=36.30 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.+|++||||.+|-|.++++.++
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeCC
Confidence 457999999999999999999654
No 76
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=34.03 E-value=78 Score=35.24 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
...++.+|+||.++-|.++++.++
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCC
Confidence 457999999999999999999654
No 77
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=33.90 E-value=40 Score=23.52 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=17.8
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHH
Q 038487 307 SLNPGSMIFEKLVSGMYLGEIVRRVLLRM 335 (472)
Q Consensus 307 S~nPg~q~~EKmiSG~YLGEivRlil~~~ 335 (472)
++||.+|+-|-=-...|+|-++=.++--+
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHH
Confidence 57999999999999999999887766544
No 78
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=33.01 E-value=1e+02 Score=23.55 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 038487 36 KQTQTILRKFARECATPVPRLWQVANALVSEMQA 69 (472)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 69 (472)
..++++++.+.+.|..+.++++.=+..|..++.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999998875
No 79
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.67 E-value=57 Score=31.83 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEecchhhh--hccccC-CCCceEEEEeCCccceeeecccC
Q 038487 206 ETLVTNINQALAKHDLNMRVYALVDDTIGSL--AGGRFY-NRDCVAAVTLGTGTNAAYVESSQ 265 (472)
Q Consensus 206 ~dv~~lL~~al~r~~l~v~v~aivNDTVaTl--la~~y~-~~~~~iGlIlGTGtNacY~e~~~ 265 (472)
+-+...|...++|+ +-++|+.++-||=+|+ +...|+ -|...=|+|-|||.-.--.-+.+
T Consensus 143 ~~vA~el~~Ei~rr-~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl~ 204 (278)
T COG4071 143 KKVAEELYKEIKRR-LGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRLA 204 (278)
T ss_pred HHHHHHHHHHHHHH-hCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHHhh
Confidence 34667788888765 4455666888998887 332222 24444589999997654444433
No 80
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=31.10 E-value=26 Score=34.21 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=17.5
Q ss_pred hhhhhccccCCCCceEEEEeCCc
Q 038487 233 IGSLAGGRFYNRDCVAAVTLGTG 255 (472)
Q Consensus 233 VaTlla~~y~~~~~~iGlIlGTG 255 (472)
+|.|.|-+-.||++.||..++++
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~ 95 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDR 95 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcC
Confidence 78888888889999999433333
No 81
>CHL00094 dnaK heat shock protein 70
Probab=30.48 E-value=92 Score=34.99 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.2
Q ss_pred ccEEEEEeCCCeeEEEEEEeCCC
Q 038487 97 GLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
+.++++||||.+|-|.++++++.
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~ 209 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDG 209 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCC
Confidence 46899999999999999999653
No 82
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=29.74 E-value=62 Score=22.77 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHH
Q 038487 307 SLNPGSMIFEKLVSGMYLGEIVRRVLLRM 335 (472)
Q Consensus 307 S~nPg~q~~EKmiSG~YLGEivRlil~~~ 335 (472)
.+||.+|+-|-=-...|+|-++=.++--+
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHH
Confidence 57999999999999999999887766554
No 83
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.70 E-value=86 Score=35.23 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCeeEEEEEEeCCC
Q 038487 97 GLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
..+|.+|+||.++-|.++++.++
T Consensus 185 ~~vlV~D~GggT~dvsv~~~~~~ 207 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEIGDG 207 (627)
T ss_pred CEEEEEECCCCeEEEEEEEEeCC
Confidence 56999999999999999999653
No 84
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=28.67 E-value=98 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCeeEEEEEEeCCC
Q 038487 97 GLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 97 G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
+.++++||||.+|=|.++++.++
T Consensus 212 ~~vlV~DlGGGT~DvSil~~~~g 234 (657)
T PTZ00186 212 SLIAVYDLGGGTFDISVLEIAGG 234 (657)
T ss_pred CEEEEEECCCCeEEEEEEEEeCC
Confidence 57999999999999999999654
No 85
>PRK13410 molecular chaperone DnaK; Provisional
Probab=28.55 E-value=1.1e+02 Score=34.96 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.8
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.+|.+||||.+|-|.++++.++
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~g 209 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGNG 209 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcCC
Confidence 357999999999999999999654
No 86
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=28.08 E-value=96 Score=35.12 Aligned_cols=24 Identities=8% Similarity=-0.009 Sum_probs=20.8
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.++.+|+||.+|-|.++++.++
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 357999999999999999999654
No 87
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=27.96 E-value=1e+02 Score=28.82 Aligned_cols=68 Identities=19% Similarity=0.429 Sum_probs=46.5
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhccCCCCCccccccccCccCCCC----cccc-cEEEEEeCCCeeEEEEEEeCCC
Q 038487 49 CATPVPRLWQ---VANALVSEMQASLASNETTTDLNMLLSYLASLPNG----EEKG-LYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 49 ~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G----~E~G-~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
+.++.+.|.+ +++.-..||-.|.....++ ++..=-|-|.. |+| ++.| .|+++.. |...-+..++++|+
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~a-d~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~-~~~~~~~~~~~~g~ 140 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGA-DIAIAITGIAG-PDGGSEGKPVGTVYIGLAI-GGEAITIRVNFGGD 140 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCC-CEEEEEEEeeC-CCCCCCCCCceEEEEEEEc-CCceEEEEEEcCCC
Confidence 4467666654 6777788888888776555 66666677765 884 3566 5888999 44444556777665
No 88
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=27.95 E-value=49 Score=33.75 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.0
Q ss_pred cccEEEEEeCCCeeEEEEEEeCC
Q 038487 96 KGLYYGINLRATDFLILCARLGG 118 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g 118 (472)
...|+++|-|.||||+-+++=+|
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 35799999999999998876544
No 89
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=27.46 E-value=1.4e+02 Score=24.68 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 40 TILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 40 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
++++.+.+...++..+...+.+.|.+.|...|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666666777999999999999999999999865
No 90
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.31 E-value=3.6e+02 Score=25.63 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHcC
Q 038487 33 QRWKQTQTILRKFARECA 50 (472)
Q Consensus 33 ~~~~~~~~~l~~~~~~~~ 50 (472)
-..+++.+++..|+++|+
T Consensus 109 mNLekis~~MDkFE~qFe 126 (203)
T KOG3232|consen 109 MNLEKISQLMDKFEKQFE 126 (203)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 345567777777777773
No 91
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=27.30 E-value=1.1e+02 Score=32.96 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=16.6
Q ss_pred EEEEeCCCeeEEEEEEeCC
Q 038487 100 YGINLRATDFLILCARLGG 118 (472)
Q Consensus 100 LAlDlGGTnlRV~~V~L~g 118 (472)
+|+|+|-|+++..+|.|..
T Consensus 4 iAvDiGTTti~~~L~dl~~ 22 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLET 22 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT
T ss_pred EEEEcchhheeeEEEECCC
Confidence 7999999999999999954
No 92
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=26.05 E-value=1.5e+02 Score=24.65 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 39 QTILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 39 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
.++++.+.+...++..+...+.+.|.++|...|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356667777778999999999999999999999764
No 93
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.90 E-value=1.1e+02 Score=34.82 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.7
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.++++|+||.+|-|.++++.++
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~ 246 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDG 246 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCC
Confidence 346999999999999999999653
No 94
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=25.54 E-value=1.4e+02 Score=33.57 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCcccccEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 038487 90 LPNGEEKGLYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHPDNGNDTSA 169 (472)
Q Consensus 90 lP~G~E~G~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~~~~~ 169 (472)
.+...+....++||||.||-.|+.. .++...++.....+..+|.-+.-...+-++..-| .+.++
T Consensus 12 ~~~~~~~~~viGIDlGTT~S~va~~--~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A-ti~~~------------- 75 (595)
T PRK01433 12 ADFKQERQIAVGIDFGTTNSLIAIA--TNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK-GLRSI------------- 75 (595)
T ss_pred CCccccCceEEEEEcCcccEEEEEE--eCCeeEEEECCCCCeecCeEEEEcCCCEEECchh-hHHHH-------------
Q ss_pred ccccceeEEe------------eeeecccCCCcEEeee-cccccCCCCCchHHHHHHHHHHhcCCC--------------
Q 038487 170 KEKKLGYTWS------------HSVDQVTTLSPSAIKW-KNFAANDTVEETLVTNINQALAKHDLN-------------- 222 (472)
Q Consensus 170 ~~l~lGfTFS------------FP~~Qt~l~~g~Li~w-KgF~~~~v~G~dv~~lL~~al~r~~l~-------------- 222 (472)
+..+|-.|+ .+..+..-....+..- +.|...++...=+..+-+.|-...|-+
T Consensus 76 -KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~ 154 (595)
T PRK01433 76 -KRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFND 154 (595)
T ss_pred -HHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Q ss_pred --------------ceEEEEEecchhhhhccccCCCCceEEEEeCCc
Q 038487 223 --------------MRVYALVDDTIGSLAGGRFYNRDCVAAVTLGTG 255 (472)
Q Consensus 223 --------------v~v~aivNDTVaTlla~~y~~~~~~iGlIlGTG 255 (472)
+++..++|..+|.-++..........-+|+.=|
T Consensus 155 ~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlG 201 (595)
T PRK01433 155 AARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLG 201 (595)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECC
No 95
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=25.49 E-value=4.7e+02 Score=26.59 Aligned_cols=45 Identities=7% Similarity=0.124 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEecchhhhhccccCCCCceEEEEe
Q 038487 206 ETLVTNINQALAKHDLNMRVYALVDDTIGSLAGGRFYNRDCVAAVTL 252 (472)
Q Consensus 206 ~dv~~lL~~al~r~~l~v~v~aivNDTVaTlla~~y~~~~~~iGlIl 252 (472)
..-.+.+++++++-|+ +++.++|..+|..++.........-++|+
T Consensus 108 ~~~r~~~~~a~~~ag~--~~~~li~ep~Aaa~~~g~~~~~~~~~lVv 152 (336)
T PRK13928 108 SVEKRAVREAAEQAGA--KKVYLIEEPLAAAIGAGLDISQPSGNMVV 152 (336)
T ss_pred HHHHHHHHHHHHHcCC--CceEecccHHHHHHHcCCcccCCCeEEEE
Confidence 3345667777776655 55789999999998865543322224444
No 96
>CHL00038 psbL photosystem II protein L
Probab=24.97 E-value=72 Score=22.37 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=25.3
Q ss_pred CCCCCcceeeeeccccchHHHHHHHHHHHH
Q 038487 307 SLNPGSMIFEKLVSGMYLGEIVRRVLLRMA 336 (472)
Q Consensus 307 S~nPg~q~~EKmiSG~YLGEivRlil~~~~ 336 (472)
.+||.+|+-|-=-...|+|-++=.++.-+.
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 479999999999999999998877766553
No 97
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=24.82 E-value=1e+02 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.8
Q ss_pred cccEEEEEeCCCeeEEEEEEeCCC
Q 038487 96 KGLYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 96 ~G~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+.++.+|+||.+|-|.++++.++
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCC
Confidence 457999999999999999999654
No 98
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=24.77 E-value=1.7e+02 Score=23.59 Aligned_cols=36 Identities=8% Similarity=0.154 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 39 QTILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 39 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
.++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 356677777778999999999999999999999874
No 99
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=24.48 E-value=52 Score=33.99 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Q 038487 376 REKLEEVFGITDSTPKAREAVVEVCDIVTERAARLAAAGIVGIIKKLGRI 425 (472)
Q Consensus 376 ~~il~~~~~~~~~~~~d~~~vr~I~~~V~~RaA~L~Aa~iaail~~~~~~ 425 (472)
...|.+.+|++ ...-.-..+.+++..|.+.+....+.+|--+..+.+.+
T Consensus 231 ~~rlAr~lg~d-~~e~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~D 279 (318)
T TIGR03123 231 MRRLARMVCAD-LEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLK 279 (318)
T ss_pred HHHHHHHhCCC-hhHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33466667763 22212245678888888888888888888777765553
No 100
>PRK10854 exopolyphosphatase; Provisional
Probab=24.42 E-value=2.7e+02 Score=30.57 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=40.9
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccc-cC-hhHHHHHHHHHHHHHHh
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMC-CT-SQELFDYIAGEFAKFVN 158 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~-~~-~~~lFd~IA~~i~~fl~ 158 (472)
.|=+||+|-.++|..+++..++...++....+...+-+.+.. |. .++=.+-..+++..|..
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~ 74 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAE 74 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 477999999999999999965544555444445666555432 21 24666777777777744
No 101
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=24.10 E-value=1.7e+02 Score=24.39 Aligned_cols=36 Identities=6% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 39 QTILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 39 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
.++++.+.+...++..+...+.+.|.++|...|...
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999864
No 102
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=23.91 E-value=1.3e+02 Score=30.86 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=33.9
Q ss_pred EEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCcccccChhHHHHHHHHHHHHHHhcCC
Q 038487 101 GINLRATDFLILCARLGGKNEPISDLHREEISIPSDVMCCTSQELFDYIAGEFAKFVNAHP 161 (472)
Q Consensus 101 AlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~i~~fl~~~~ 161 (472)
.||+|-.++|++.++-.+++..+. ..-..++|+.........=.+.+++.|.+.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~--~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~ 59 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLE--AFASIPLPPGAISDGEIVDPEALAEALKELLKENK 59 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEE--EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT
T ss_pred CeecCCCeEEEEEEEEcCCccEEE--EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcC
Confidence 489999999998888755544333 33356788876532211224566777777777654
No 103
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=23.81 E-value=2.1e+02 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=34.2
Q ss_pred EEEEEeCCCeeEEEEEEeCCCC-ccceeeeeeeeccCCc-ccccChhHHHHHHHHHHHHHHhcC
Q 038487 99 YYGINLRATDFLILCARLGGKN-EPISDLHREEISIPSD-VMCCTSQELFDYIAGEFAKFVNAH 160 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~-~~~~~~~~~~~~Ip~~-~~~~~~~~lFd~IA~~i~~fl~~~ 160 (472)
|.+||+|-|+++++..+..+++ ..+.... ..|.. +..|.-.+ .+-++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 5799999999999999986432 3333221 12433 44443222 455566666666643
No 104
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=22.96 E-value=40 Score=36.77 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=46.9
Q ss_pred cceeE-Eeeeeeccc------CCCcEEeeecccccCCCCCchHHHHHHHHHHhcCCCceEEEEEecc----hhhhhcccc
Q 038487 173 KLGYT-WSHSVDQVT------TLSPSAIKWKNFAANDTVEETLVTNINQALAKHDLNMRVYALVDDT----IGSLAGGRF 241 (472)
Q Consensus 173 ~lGfT-FSFP~~Qt~------l~~g~Li~wKgF~~~~v~G~dv~~lL~~al~r~~l~v~v~aivNDT----VaTlla~~y 241 (472)
-++++ |+||+.... |..|--+-||+=.-+.....-++++|++++.+.|+|-.++.++..+ +..|+.
T Consensus 108 V~~I~P~n~P~~~~~~k~~~AL~aGNaVIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv~~v~g~~~e~~~~L~~--- 184 (488)
T TIGR02518 108 VAGLIPSTNPTSTAIYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGCITVPTIEGTNELMK--- 184 (488)
T ss_pred EEEEcccCChHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHHHHHHHHHHcCcCcccEEEEcCCCHHHHHHHHh---
Confidence 34456 777764332 2333333333322222345667888999999999999888888742 223333
Q ss_pred CCCCceEEEEeCCccce
Q 038487 242 YNRDCVAAVTLGTGTNA 258 (472)
Q Consensus 242 ~~~~~~iGlIlGTGtNa 258 (472)
+++ |.+|+=||...
T Consensus 185 -~~~--vd~V~fTGs~~ 198 (488)
T TIGR02518 185 -NKD--TSLILATGGEA 198 (488)
T ss_pred -CCC--cCEEEEeCCHH
Confidence 222 66777777654
No 105
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=22.94 E-value=1.8e+02 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 40 TILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 40 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
++++.+.+...++..+...+.+.|.+.|...|...
T Consensus 5 eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 5 ELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666667777999999999999999999999764
No 106
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=22.82 E-value=1.4e+02 Score=27.17 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=39.8
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhccCCCCCccccccccCccCCCC----cccc-cEEEEEeCCCeeEEEEEEeC
Q 038487 49 CATPVPRLWQ---VANALVSEMQASLASNETTTDLNMLLSYLASLPNG----EEKG-LYYGINLRATDFLILCARLG 117 (472)
Q Consensus 49 ~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G----~E~G-~fLAlDlGGTnlRV~~V~L~ 117 (472)
+.+|.+.|++ ++.....+|-+|.....++ ++.---|-+.. |+| .+.| .|++|-..+....+-..++.
T Consensus 53 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~a-di~ia~TG~AG-P~~~~~~~pvGtv~ial~~~~~~~~~~~~~~~ 127 (146)
T TIGR00199 53 LGVSQETLARFGAVSEECAAEMALGVKERFGA-DVGIAISGIAG-PDGGEEEKPGGTVWFIWIIAKGQAYTAEMHFA 127 (146)
T ss_pred hCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CEEEEeeccCC-CCCCCCCCCCeEEEEEEEeCCCcEEEEEEecC
Confidence 4577777766 7777777887777665445 55555555543 553 4566 57888763333334344443
No 107
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=22.46 E-value=1.2e+02 Score=34.33 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=19.7
Q ss_pred cEEEEEeCCCeeEEEEEEeCCC
Q 038487 98 LYYGINLRATDFLILCARLGGK 119 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~ 119 (472)
.+|.+||||.+|-|.++++.++
T Consensus 227 ~vlV~DlGgGT~DvSv~~~~~g 248 (663)
T PTZ00400 227 TIAVYDLGGGTFDISILEILGG 248 (663)
T ss_pred EEEEEeCCCCeEEEEEEEecCC
Confidence 6899999999999999999654
No 108
>PRK03661 hypothetical protein; Validated
Probab=22.12 E-value=1.5e+02 Score=27.58 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=42.8
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhccCCCCCccccccccCccCCCC----cccc-cEEEEEeCCCeeEEEEEEeCC
Q 038487 48 ECATPVPRLWQ---VANALVSEMQASLASNETTTDLNMLLSYLASLPNG----EEKG-LYYGINLRATDFLILCARLGG 118 (472)
Q Consensus 48 ~~~~~~~~L~~---i~~~f~~em~~GL~~~~~s~~l~MlPS~v~~lP~G----~E~G-~fLAlDlGGTnlRV~~V~L~g 118 (472)
.+.+|.+.|++ ++..-..+|-.|....-++ ++..--|-+.. |+| +..| .|++|...+....+-..++.|
T Consensus 64 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~a-d~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~~~~~~~~~~~~~g 140 (164)
T PRK03661 64 MIGVREETLAQHGAVSEPVVVEMAIGALKAARA-DYAVSISGIAG-PDGGSEEKPVGTVWFGFASASGEGITRRECFSG 140 (164)
T ss_pred HcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CEEEEecccCC-CCCCCCCCCceEEEEEEEeCCCcEEEEEEecCC
Confidence 34577777776 7777777787777665445 56555566654 654 4567 588887644334444444543
No 109
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=22.03 E-value=2.6e+02 Score=29.56 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=56.9
Q ss_pred ceeeeeccccchHHHHHHHHHHHHhcc-CCCCCCCCCCcCCCCcCCchhhhhh----ccCCCcChHHHHHHHHHHhCCCC
Q 038487 313 MIFEKLVSGMYLGEIVRRVLLRMAKEA-DLFGDTVPPKLMMPYLLRPPDMATM----HQDTSEDHELVREKLEEVFGITD 387 (472)
Q Consensus 313 q~~EKmiSG~YLGEivRlil~~~~~~~-~lf~~~~~~~l~~~~~~~t~~ls~i----~~d~~~~~~~~~~il~~~~~~~~ 387 (472)
-|+|-.+-|.--|-++|....+|.+.+ .+-+-.+|+.+..-..|+...+.-- +.|+.-+.+ +++. +|+
T Consensus 154 iPlEvVvR~y~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~---~i~~--~g~-- 226 (370)
T PLN02544 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPE---EIVE--EGL-- 226 (370)
T ss_pred eeEEEEEEeeeeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHH---HHHH--hcC--
Confidence 488999999888999998888887632 2222234443332222222211100 234332222 2221 565
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHH
Q 038487 388 STPKAREAVVEVCDIVTERAARLAAA 413 (472)
Q Consensus 388 ~~~~d~~~vr~I~~~V~~RaA~L~Aa 413 (472)
.+.++.+.+++++..|..+++.+++.
T Consensus 227 ~~~ee~~~i~~~alki~~~l~~~~~~ 252 (370)
T PLN02544 227 MTQEDFDEVSSKALALFAFGQEVAAE 252 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988877653
No 110
>PF13941 MutL: MutL protein
Probab=21.99 E-value=1e+02 Score=33.46 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=23.1
Q ss_pred cEEEEEeCCCeeEEEEEEeCCCCccceee
Q 038487 98 LYYGINLRATDFLILCARLGGKNEPISDL 126 (472)
Q Consensus 98 ~fLAlDlGGTnlRV~~V~L~g~~~~~~~~ 126 (472)
.||++|+|.|.-|+..|.+..+..+++-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~ 29 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ 29 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE
Confidence 48999999999999999976555555543
No 111
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=21.54 E-value=2.2e+02 Score=23.61 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccC
Q 038487 40 TILRKFARECATPVPRLWQVANALVSEMQASLASN 74 (472)
Q Consensus 40 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~GL~~~ 74 (472)
++++.+.+...++..+...+.+.|.+.|...|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~ 39 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 45666666677999999999999999999999875
No 112
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=21.41 E-value=2.7e+02 Score=28.06 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=39.3
Q ss_pred EEEEEeCCCeeEEEEEEeCCCCccceeeeeeeeccCCccc-ccC-hhHHHHHHHHHHHHHHhc
Q 038487 99 YYGINLRATDFLILCARLGGKNEPISDLHREEISIPSDVM-CCT-SQELFDYIAGEFAKFVNA 159 (472)
Q Consensus 99 fLAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~~~-~~~lFd~IA~~i~~fl~~ 159 (472)
|=+||+|-.++|...+++.++...+........++.+.+- ++. .++=.+-+.+++.+|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4589999999999999986443333333334456665542 222 245566777788888654
No 113
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=20.43 E-value=3.1e+02 Score=25.27 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=35.4
Q ss_pred HHHhhHHHHHHHHHHHHH-hcccCccceEEEEec-----ceeeecHhHHHHHHHHHHHHhCCCC
Q 038487 404 TERAARLAAAGIVGIIKK-LGRIELKKSVVNVEG-----GLYEHYRIFRNYLHSSVWEMLGNEL 461 (472)
Q Consensus 404 ~~RaA~L~Aa~iaail~~-~~~~~~~~~~V~vdG-----S~~~~~p~y~~~l~~~l~~l~~~~~ 461 (472)
.++|||+|+..+.|.++. +|..+.-+-.|=+.| .-|..||.-.+-..+-+.+++|+.+
T Consensus 59 g~~AAr~~~Ln~La~lk~~~G~LdrV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~G 122 (148)
T PF14588_consen 59 GYEAARLCALNALAALKAALGDLDRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEAG 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSGGGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcCC
Confidence 467999999888888874 444322111222222 2356667777778888888888653
No 114
>PHA02436 hypothetical protein
Probab=20.15 E-value=95 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=25.1
Q ss_pred cccccCCCCC-chHHHHHHHHHHhc-CCCceEE
Q 038487 196 KNFAANDTVE-ETLVTNINQALAKH-DLNMRVY 226 (472)
Q Consensus 196 KgF~~~~v~G-~dv~~lL~~al~r~-~l~v~v~ 226 (472)
|||.++++-| +.+-+.++++..+. |+.|+|.
T Consensus 7 ~gfiiKE~yGeRkIEEVFeE~YE~~YG~~vKV~ 39 (52)
T PHA02436 7 KGFIIKETYGERNIEEVFKEAYESFYGVEVKVV 39 (52)
T ss_pred ccEEeehhhchhhHHHHHHHHHHHhcCeEEEEE
Confidence 9999999766 46778888888774 8888875
Done!